Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CELSR2	0	genome.wustl.edu	37	1	109795285	109795285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	109795285	109795285	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.2584	p.G862S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				94	0	0	101	29	22.3077
AMIGO1	0	genome.wustl.edu	37	1	110050335	110050335	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	110050335	110050335	G	T	SNP	AMIGO1	ENST00000369862	human	ensembl	74_37	-1	known	nonsense	c.1200	p.C400*	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	AMIGO1	HGNC	ENSG00000181754				81	0	0	73	17	18.8889
C1orf127	0	genome.wustl.edu	37	1	11008529	11008529	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	11008529	11008529	T	C	SNP	C1orf127	ENST00000377004	human	ensembl	74_37	-1	known	missense	c.1663	p.K555E	0.012	NULL	superfamily_DNA-bd_dom_put	-	no_errors	C1orf127	HGNC	ENSG00000175262				83	0	0	60	16	21.0526
KCNC4	0	genome.wustl.edu	37	1	110754491	110754491	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	110754491	110754491	C	T	SNP	KCNC4	ENST00000369787	human	ensembl	74_37	+1	known	missense	c.370	p.P124S	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_K_chnl_volt-dep_Kv3_ID,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.4,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC4	HGNC	ENSG00000116396				80	0	0	77	8	9.41176
KCNA3	0	genome.wustl.edu	37	1	111216088	111216088	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	111216088	111216088	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	silent	c.1344	p.G448	0.359	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				85	0	0	84	15	15.1515
KCNA3	0	genome.wustl.edu	37	1	111216663	111216663	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	111216663	111216663	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	missense	c.769	p.P257S	1.000	prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				99	0	0	101	27	21.0938
KCNA3	0	genome.wustl.edu	37	1	111217063	111217063	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	111217063	111217063	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	silent	c.369	p.C123	0.996	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1.3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				128	0	0	147	28	16
ENSG00000226849	0	genome.wustl.edu	37	1	11132286	11132286	+	RNA	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	11132286	11132286	T	C	SNP	ENSG00000226849	ENST00000452378	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-635E18.7	Clone_based_vega_gene	ENSG00000226849				40	0	0	25	10	28.5714
EXOSC10	0	genome.wustl.edu	37	1	11137673	11137673	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	11137673	11137673	C	T	SNP	EXOSC10	ENST00000376936	human	ensembl	74_37	-1	known	silent	c.1785	p.P595	0.002	superfamily_HRDC-like	pfam_3'-5'_exonuclease_dom,pfam_Exosome-assoc_fac_Rrp6_N,pfam_HRDC_dom,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_HRDC_dom,pfscan_HRDC_dom	-	no_errors	EXOSC10	HGNC	ENSG00000171824				81	0	0	80	21	20.7921
MTOR	0	genome.wustl.edu	37	1	11181356	11181356	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	11181356	11181356	T	C	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.6880	p.T2294A	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				83	0	0	86	13	13.1313
FAM19A3	0	genome.wustl.edu	37	1	113265709	113265709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	113265709	113265709	C	T	SNP	FAM19A3	ENST00000369630	human	ensembl	74_37	+1	known	missense	c.187	p.R63C	1.000	pfam_Chemokine-like_FAM19A2	pfam_Chemokine-like_FAM19A2	-	no_errors	FAM19A3	HGNC	ENSG00000184599				36	0	0	42	8	16
MAGI3	0	genome.wustl.edu	37	1	114226109	114226109	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	114226109	114226109	A	C	SNP	MAGI3	ENST00000307546	human	ensembl	74_37	+1	novel	missense	c.3919	p.K1307Q	0.058	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI3	HGNC	ENSG00000081026				128	0	0	126	37	22.6994
SYCP1	0	genome.wustl.edu	37	1	115488986	115488986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	115488986	115488986	C	T	SNP	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	missense	c.2231	p.S744L	0.187	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				31	0	0	58	15	20.5479
PTCHD2	0	genome.wustl.edu	37	1	11579431	11579431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	11579431	11579431	C	T	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.1909	p.R637W	0.331	pfam_Patched	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				255	0	0	251	44	14.9153
WARS2	0	genome.wustl.edu	37	1	119619170	119619170	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	119619170	119619170	T	C	SNP	WARS2	ENST00000235521	human	ensembl	74_37	-1	known	missense	c.151	p.N51D	1.000	pfam_aa-tRNA-synth_Ic,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	pfam_aa-tRNA-synth_Ic,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS2	HGNC	ENSG00000116874				210	0	0	293	51	14.8256
PHGDH	0	genome.wustl.edu	37	1	120263849	120263849	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	120263849	120263849	C	T	SNP	PHGDH	ENST00000369409	human	ensembl	74_37	+1	known	silent	c.195	p.N65	0.042	pfam_D-isomer_2_OHA_DH_cat_dom,tigrfam_D-3-Phosphoglycerate_DH	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,tigrfam_D-3-Phosphoglycerate_DH	-	no_errors	PHGDH	HGNC	ENSG00000092621				156	1	0.636943	208	39	15.7895
MXRA8	0	genome.wustl.edu	37	1	1290109	1290109	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	1290109	1290109	C	T	SNP	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	missense	c.902	p.R301Q	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				33	0	0	23	7	23.3333
POLR3GL	0	genome.wustl.edu	37	1	145457969	145457969	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	145457969	145457969	T	C	SNP	POLR3GL	ENST00000369314	human	ensembl	74_37	-1	known	silent	c.291	p.S97	0.620	pfam_RNA_pol_III_Rpc31	pfam_RNA_pol_III_Rpc31	-	no_errors	POLR3GL	HGNC	ENSG00000121851				75	0	0	86	20	18.8679
PIAS3	0	genome.wustl.edu	37	1	145578465	145578465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	145578465	145578465	G	A	SNP	PIAS3	ENST00000393045	human	ensembl	74_37	+1	known	missense	c.428	p.R143Q	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS3	HGNC	ENSG00000131788				145	0	0	130	32	19.7531
FCGR1A	0	genome.wustl.edu	37	1	149760090	149760090	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	149760090	149760090	A	G	SNP	FCGR1A	ENST00000369168	human	ensembl	74_37	+1	known	missense	c.476	p.N159S	0.835	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCGR1A	HGNC	ENSG00000150337				77	0	0	103	20	16.2602
CGN	0	genome.wustl.edu	37	1	151503053	151503053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	151503053	151503053	G	A	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	missense	c.2402	p.R801H	0.447	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				55	0	0	37	12	24.4898
TCHH	0	genome.wustl.edu	37	1	152083414	152083414	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	152083414	152083414	T	C	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.2279	p.E760G	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				227	0	0	215	52	19.4757
TCHH	0	genome.wustl.edu	37	1	152083994	152083994	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	152083994	152083994	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	silent	c.1699	p.L567	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				171	0	0	205	44	17.6707
FLG	0	genome.wustl.edu	37	1	152276300	152276300	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	152276300	152276300	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.11062	p.H3688Y	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				254	1	0.392157	217	47	17.803
LCE1E	0	genome.wustl.edu	37	1	152760047	152760047	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	152760047	152760047	A	G	SNP	LCE1E	ENST00000368770	human	ensembl	74_37	+1	known	missense	c.272	p.Q91R	0.008	NULL	NULL	-	no_errors	LCE1E	HGNC	ENSG00000186226				124	0	0	108	14	11.4754
LCE1D	0	genome.wustl.edu	37	1	152770530	152770530	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	152770530	152770530	A	G	SNP	LCE1D	ENST00000326233	human	ensembl	74_37	+1	known	missense	c.260	p.Q87R	0.674	NULL	NULL	-	no_errors	LCE1D	HGNC	ENSG00000172155				91	0	0	81	9	10
LOR	0	genome.wustl.edu	37	1	153234308	153234308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	153234308	153234308	G	A	SNP	LOR	ENST00000368742	human	ensembl	74_37	+1	known	missense	c.883	p.V295I	1.000	NULL	NULL	-	no_errors	LOR	HGNC	ENSG00000203782				30	0	0	28	9	24.3243
S100A13	0	genome.wustl.edu	37	1	153591342	153591342	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	153591342	153591342	C	T	SNP	S100A13	ENST00000476133	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	S100A13	HGNC	ENSG00000189171				147	0	0	157	36	18.6528
DENND4B	0	genome.wustl.edu	37	1	153906294	153906294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	153906294	153906294	C	T	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	missense	c.2995	p.D999N	0.955	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				37	0	0	32	3	8.57143
MIB2	0	genome.wustl.edu	37	1	1562227	1562227	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	1562227	1562227	G	A	SNP	MIB2	ENST00000505820	human	ensembl	74_37	+1	known	missense	c.1433	p.R478H	0.274	NULL	pfam_Mib_Herc2,pfam_Ankyrin_rpt,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ,prints_Ankyrin_rpt	-	no_errors	MIB2	HGNC	ENSG00000197530				39	0	0	28	4	12.5
SMG5	0	genome.wustl.edu	37	1	156228860	156228860	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	156228860	156228860	A	G	SNP	SMG5	ENST00000361813	human	ensembl	74_37	-1	known	missense	c.2378	p.F793S	1.000	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG5	HGNC	ENSG00000198952				70	0	0	71	18	20.2247
HAPLN2	0	genome.wustl.edu	37	1	156594421	156594421	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	156594421	156594421	C	T	SNP	HAPLN2	ENST00000255039	human	ensembl	74_37	+1	known	silent	c.585	p.N195	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN2	HGNC	ENSG00000132702				39	0	0	47	10	17.5439
NES	0	genome.wustl.edu	37	1	156641212	156641212	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	156641212	156641212	A	G	SNP	NES	ENST00000368223	human	ensembl	74_37	-1	known	missense	c.2768	p.L923P	0.000	NULL	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				164	0	0	189	29	13.3028
NTRK1	0	genome.wustl.edu	37	1	156836706	156836706	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	156836706	156836706	C	A	SNP	NTRK1	ENST00000524377	human	ensembl	74_37	+1	known	missense	c.364	p.L122I	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400				100	0	0	130	15	10.3448
ARHGEF11	0	genome.wustl.edu	37	1	156909362	156909362	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	156909362	156909362	T	C	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	silent	c.4074	p.G1358	0.868	NULL	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				105	0	0	155	36	18.8482
CELA2B	0	genome.wustl.edu	37	1	15808798	15808798	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	15808798	15808798	A	G	SNP	CELA2B	ENST00000375910	human	ensembl	74_37	+1	known	missense	c.266	p.N89S	0.969	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CELA2B	HGNC	ENSG00000215704				89	0	0	122	24	16.4384
CD1A	0	genome.wustl.edu	37	1	158225973	158225973	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	158225973	158225973	C	T	SNP	CD1A	ENST00000289429	human	ensembl	74_37	+1	known	nonsense	c.505	p.Q169*	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1A	HGNC	ENSG00000158477				80	0	0	116	18	13.4328
SPTA1	0	genome.wustl.edu	37	1	158609667	158609667	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	158609667	158609667	A	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.4868	p.L1623P	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				137	0	0	164	33	16.7513
SPTA1	0	genome.wustl.edu	37	1	158641957	158641957	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	158641957	158641957	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	silent	c.1380	p.A460	0.741	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				59	0	0	64	9	12.3288
IFI16	0	genome.wustl.edu	37	1	159019381	159019381	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	159019381	159019381	T	G	SNP	IFI16	ENST00000295809	human	ensembl	74_37	+1	known	missense	c.1657	p.L553V	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565				153	0	0	157	27	14.6739
OR10J5	0	genome.wustl.edu	37	1	159505639	159505639	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	159505639	159505639	A	G	SNP	OR10J5	ENST00000334857	human	ensembl	74_37	-1	known	silent	c.159	p.H53	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10J5	HGNC	ENSG00000184155				172	0	0	188	38	16.8142
COPA	0	genome.wustl.edu	37	1	160269047	160269047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	160269047	160269047	C	T	SNP	COPA	ENST00000368069	human	ensembl	74_37	-1	known	missense	c.1702	p.G568R	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				59	0	0	87	6	6.45161
VANGL2	0	genome.wustl.edu	37	1	160385899	160385899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	160385899	160385899	G	A	SNP	VANGL2	ENST00000368061	human	ensembl	74_37	+1	known	missense	c.119	p.G40E	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738				119	0	0	112	20	15.1515
SPEN	0	genome.wustl.edu	37	1	16258881	16258881	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	16258881	16258881	G	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.6146	p.G2049D	0.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				99	0	0	89	18	16.8224
SPEN	0	genome.wustl.edu	37	1	16261125	16261125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	16261125	16261125	C	T	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.8390	p.P2797L	0.759	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				72	0	0	68	9	11.6883
FAM78B	0	genome.wustl.edu	37	1	166039513	166039513	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	166039513	166039513	G	A	SNP	FAM78B	ENST00000338353	human	ensembl	74_37	-1	known	missense	c.751	p.R251W	1.000	NULL	NULL	-	no_errors	FAM78B	HGNC	ENSG00000188859				196	0	0	176	34	16.1905
RABGAP1L	0	genome.wustl.edu	37	1	174652732	174652732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	174652732	174652732	C	T	SNP	RABGAP1L	ENST00000251507	human	ensembl	74_37	+1	known	missense	c.1897	p.H633Y	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1L	HGNC	ENSG00000152061				68	0	0	88	13	12.8713
TNR	0	genome.wustl.edu	37	1	175306814	175306814	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	175306814	175306814	T	C	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	silent	c.3384	p.G1128	0.997	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				52	0	0	32	7	17.9487
BRINP2	0	genome.wustl.edu	37	1	177245458	177245458	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	177245458	177245458	C	T	SNP	BRINP2	ENST00000361539	human	ensembl	74_37	+1	known	silent	c.900	p.S300	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP2	HGNC	ENSG00000198797				67	0	0	51	12	19.0476
RALGPS2	0	genome.wustl.edu	37	1	178854298	178854298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	178854298	178854298	G	A	SNP	RALGPS2	ENST00000367635	human	ensembl	74_37	+1	known	missense	c.992	p.R331Q	1.000	NULL	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	-	no_errors	RALGPS2	HGNC	ENSG00000116191				60	0	0	88	13	12.8713
KIAA1614	0	genome.wustl.edu	37	1	180897619	180897619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	180897619	180897619	C	T	SNP	KIAA1614	ENST00000367588	human	ensembl	74_37	+1	known	missense	c.1115	p.T372M	0.968	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835				217	0	0	195	34	14.8472
LAMC1	0	genome.wustl.edu	37	1	183086469	183086469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	183086469	183086469	C	T	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	missense	c.1579	p.R527C	0.972	pfscan_Laminin_B_type_IV	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				54	0	0	65	10	13.3333
HMCN1	0	genome.wustl.edu	37	1	186022123	186022123	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	186022123	186022123	T	G	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.6617	p.L2206R	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				71	0	0	90	21	18.9189
KLHDC7A	0	genome.wustl.edu	37	1	18809260	18809260	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	18809260	18809260	C	T	SNP	KLHDC7A	ENST00000400664	human	ensembl	74_37	+1	known	silent	c.1785	p.G595	0.996	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7A	HGNC	ENSG00000179023				26	0	0	26	5	16.129
BRINP3	0	genome.wustl.edu	37	1	190129952	190129952	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	190129952	190129952	A	G	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	silent	c.1030	p.L344	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				90	0	0	145	38	20.765
EMC1	0	genome.wustl.edu	37	1	19565789	19565789	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	19565789	19565789	A	G	SNP	EMC1	ENST00000477853	human	ensembl	74_37	-1	known	missense	c.962	p.L321P	0.972	NULL	pfam_DUF1620,superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	EMC1	HGNC	ENSG00000127463				100	0	0	95	15	13.6364
LHX9	0	genome.wustl.edu	37	1	197890647	197890647	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	197890647	197890647	G	A	SNP	LHX9	ENST00000367387	human	ensembl	74_37	+1	known	silent	c.591	p.P197	0.921	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX9	HGNC	ENSG00000143355				72	0	0	73	7	8.75
RPS10P7	0	genome.wustl.edu	37	1	201489303	201489303	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	201489303	201489303	G	A	SNP	RPS10P7	ENST00000441932	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPS10P7	HGNC	ENSG00000223396				28	0	0	34	4	10.5263
PPP1R12B	0	genome.wustl.edu	37	1	202532034	202532034	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	202532034	202532034	A	G	SNP	PPP1R12B	ENST00000336894	human	ensembl	74_37	+1	known	missense	c.2636	p.N879S	0.997	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				105	0	0	172	34	16.5049
ATP2B4	0	genome.wustl.edu	37	1	203668687	203668687	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	203668687	203668687	T	A	SNP	ATP2B4	ENST00000357681	human	ensembl	74_37	+1	known	nonsense	c.491	p.L164*	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668				163	0	0	186	31	14.2857
ZC3H11A	0	genome.wustl.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	203821508	203821508	C	G	SNP	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	nonsense	c.2414	p.S805*	0.993	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673				40	0	0	77	7	8.33333
PRKCZ	0	genome.wustl.edu	37	1	2066734	2066734	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	2066734	2066734	G	T	SNP	PRKCZ	ENST00000378567	human	ensembl	74_37	+1	known	missense	c.368	p.R123M	1.000	pirsf_PKC_zeta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCZ	HGNC	ENSG00000067606				52	0	0	57	5	8.06452
CR1L	0	genome.wustl.edu	37	1	207851614	207851614	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	207851614	207851614	T	A	SNP	CR1L	ENST00000508064	human	ensembl	74_37	+1	known	missense	c.349	p.S117T	0.594	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1L	HGNC	ENSG00000197721				65	0	0	113	13	10.3175
SYT14	0	genome.wustl.edu	37	1	210273768	210273768	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	210273768	210273768	T	C	SNP	SYT14	ENST00000422431	human	ensembl	74_37	+1	known	missense	c.1261	p.S421P	1.000	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT14	HGNC	ENSG00000143469				45	0	0	63	15	19.2308
EPRS	0	genome.wustl.edu	37	1	220205738	220205738	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	220205738	220205738	T	G	SNP	EPRS	ENST00000366923	human	ensembl	74_37	-1	known	missense	c.519	p.K173N	0.102	tigrfam_Glu-tRNA-synth_arc/euk	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_ligase_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_ligase_II_C,prints_Glu/Gln-tRNA-synth,prints_Pro-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-ligase_IIa_arc-type,tigrfam_Glu-tRNA-synth_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628				58	0	0	79	18	18.5567
BPNT1	0	genome.wustl.edu	37	1	220253146	220253146	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	220253146	220253146	C	T	SNP	BPNT1	ENST00000322067	human	ensembl	74_37	-1	known	missense	c.43	p.A15T	0.987	pfam_Inositol_monophosphatase	pfam_Inositol_monophosphatase	-	no_errors	BPNT1	HGNC	ENSG00000162813				71	0	0	91	14	13.3333
MARC2	0	genome.wustl.edu	37	1	220953492	220953492	+	RNA	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	220953492	220953492	T	G	SNP	MARC2	ENST00000472447	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MARC2	HGNC	ENSG00000117791				228	0	0	256	48	15.7895
DUSP10	0	genome.wustl.edu	37	1	221912436	221912436	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	221912436	221912436	G	T	SNP	DUSP10	ENST00000366899	human	ensembl	74_37	-1	known	silent	c.651	p.S217	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507				67	0	0	88	17	16.1905
TAF1A	0	genome.wustl.edu	37	1	222732052	222732052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	222732052	222732052	G	A	SNP	TAF1A	ENST00000350027	human	ensembl	74_37	-1	known	missense	c.1303	p.R435W	0.930	pirsf_RNA_pol_I_TAF1A/TAFI48	pirsf_RNA_pol_I_TAF1A/TAFI48	-	no_errors	TAF1A	HGNC	ENSG00000143498				39	0	0	72	13	15.2941
C1orf65	0	genome.wustl.edu	37	1	223568232	223568232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	223568232	223568232	G	A	SNP	C1orf65	ENST00000366875	human	ensembl	74_37	+1	known	missense	c.1415	p.R472H	0.001	NULL	NULL	-	no_errors	C1orf65	HGNC	ENSG00000178395				64	0	0	58	15	20.5479
LEFTY2	0	genome.wustl.edu	37	1	226125159	226125159	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	226125159	226125159	T	C	SNP	LEFTY2	ENST00000366820	human	ensembl	74_37	-1	known	silent	c.1083	p.P361	0.000	pirsf_LRDF	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,pirsf_LRDF,prints_LRDF	-	no_errors	LEFTY2	HGNC	ENSG00000143768				102	0	0	150	23	13.2948
GUK1	0	genome.wustl.edu	37	1	228334618	228334618	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	228334618	228334618	C	T	SNP	GUK1	ENST00000366722	human	ensembl	74_37	+1	known	missense	c.230	p.S77L	0.998	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like,tigrfam_Guanylate_kinase	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like,tigrfam_Guanylate_kinase	-	no_errors	GUK1	HGNC	ENSG00000143774				123	0	0	122	17	12.2302
OBSCN	0	genome.wustl.edu	37	1	228528510	228528510	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	228528510	228528510	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.17618	p.R5873H	0.998	superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				21	0	0	18	3	14.2857
URB2	0	genome.wustl.edu	37	1	229772442	229772442	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	229772442	229772442	A	G	SNP	URB2	ENST00000258243	human	ensembl	74_37	+1	known	silent	c.2082	p.E694	0.042	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763				211	0	0	331	50	13.1234
EPHB2	0	genome.wustl.edu	37	1	23189542	23189542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	23189542	23189542	G	A	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	missense	c.824	p.G275E	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				158	0	0	163	35	17.6768
DISC1	0	genome.wustl.edu	37	1	231954090	231954090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	231954090	231954090	C	T	SNP	DISC1	ENST00000439617	human	ensembl	74_37	+1	known	missense	c.1808	p.T603M	0.749	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946				112	0	0	129	32	19.8758
LYST	0	genome.wustl.edu	37	1	235884191	235884191	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	235884191	235884191	T	C	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	silent	c.9330	p.V3110	0.978	superfamily_BEACH_dom,superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				88	0	0	127	28	18.0645
MTR	0	genome.wustl.edu	37	1	237026853	237026853	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	237026853	237026853	C	T	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	nonsense	c.2404	p.R802*	1.000	pfam_Cobalamin-bd,superfamily_Cobalamin-bd,pirsf_MetH,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				39	0	0	46	8	14.8148
RYR2	0	genome.wustl.edu	37	1	237540729	237540729	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	237540729	237540729	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	silent	c.564	p.R188	1.000	pfam_Ins145_P3_rcpt,superfamily_MIR_motif,smart_MIR_motif,prints_Ryan_recept	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				39	0	0	46	12	20.6897
RYR2	0	genome.wustl.edu	37	1	237957207	237957207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	237957207	237957207	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.13841	p.R4614Q	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				32	0	0	50	13	20.6349
FMN2	0	genome.wustl.edu	37	1	240370469	240370469	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	240370469	240370469	C	A	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.2357	p.S786Y	1.000	NULL	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				97	0	0	102	18	15
FMN2	0	genome.wustl.edu	37	1	240371913	240371913	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	240371913	240371913	G	A	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	silent	c.3801	p.L1267	0.901	pfam_Formin_homology_1,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				51	0	0	65	17	20.7317
GALE	0	genome.wustl.edu	37	1	24124675	24124675	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	24124675	24124675	C	A	SNP	GALE	ENST00000374497	human	ensembl	74_37	-1	known	missense	c.283	p.G95C	1.000	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_Male_sterile_NAD-bd,pfam_PKS_KR,tigrfam_GalE	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_Male_sterile_NAD-bd,pfam_PKS_KR,prints_Nuc_sugar_epim,tigrfam_GalE	-	no_errors	GALE	HGNC	ENSG00000117308				102	0	0	91	16	14.9533
FH	0	genome.wustl.edu	37	1	241667467	241667467	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	241667467	241667467	A	G	SNP	FH	ENST00000366560	human	ensembl	74_37	-1	known	missense	c.983	p.M328T	1.000	pfam_Fumarate_lyase_N,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Fum_hydII	pfam_Fumarate_lyase_N,pfam_Fumarase_C_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Fum_hydII	-	no_errors	FH	HGNC	ENSG00000091483				70	0	0	88	15	14.5631
CEP170	0	genome.wustl.edu	37	1	243327673	243327673	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	243327673	243327673	A	T	SNP	CEP170	ENST00000366542	human	ensembl	74_37	-1	known	missense	c.3589	p.F1197I	0.998	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702				23	0	0	28	6	17.6471
SDCCAG8	0	genome.wustl.edu	37	1	243542116	243542116	+	Silent	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	243542116	243542116	A	C	SNP	SDCCAG8	ENST00000366541	human	ensembl	74_37	+1	known	silent	c.1567	p.R523	0.999	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282				85	0	0	102	17	14.2857
CNST	0	genome.wustl.edu	37	1	246811064	246811064	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	246811064	246811064	A	G	SNP	CNST	ENST00000366513	human	ensembl	74_37	+1	known	missense	c.1561	p.I521V	0.000	NULL	NULL	-	no_errors	CNST	HGNC	ENSG00000162852				116	0	0	152	34	18.2796
AHCTF1	0	genome.wustl.edu	37	1	247062790	247062790	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	247062790	247062790	C	T	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	missense	c.1484	p.G495E	1.000	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				48	0	0	80	14	14.8936
ZNF669	0	genome.wustl.edu	37	1	247263916	247263916	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	247263916	247263916	G	A	SNP	ZNF669	ENST00000343381	human	ensembl	74_37	-1	known	silent	c.1155	p.T385	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF669	HGNC	ENSG00000188295				118	0	0	164	23	12.2995
OR2G2	0	genome.wustl.edu	37	1	247751729	247751729	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	247751729	247751729	A	G	SNP	OR2G2	ENST00000320065	human	ensembl	74_37	+1	known	missense	c.68	p.Y23C	0.006	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489				89	0	0	134	28	17.284
OR2G2	0	genome.wustl.edu	37	1	247752185	247752185	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	247752185	247752185	G	A	SNP	OR2G2	ENST00000320065	human	ensembl	74_37	+1	known	missense	c.524	p.R175H	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489				163	0	0	134	29	17.7914
OR14A16	0	genome.wustl.edu	37	1	247978944	247978944	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	247978944	247978944	A	G	SNP	OR14A16	ENST00000357627	human	ensembl	74_37	-1	known	silent	c.88	p.L30	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14A16	HGNC	ENSG00000196772				74	0	0	89	17	16.0377
OR2L2	0	genome.wustl.edu	37	1	248202164	248202164	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	248202164	248202164	T	G	SNP	OR2L2	ENST00000366479	human	ensembl	74_37	+1	known	missense	c.595	p.F199V	0.005	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L2	HGNC	ENSG00000203663				241	0	0	279	54	16.2162
OR2T4	0	genome.wustl.edu	37	1	248525492	248525492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	248525492	248525492	C	T	SNP	OR2T4	ENST00000366475	human	ensembl	74_37	+1	known	missense	c.610	p.R204W	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944				223	0	0	254	46	15.3333
OR2T1	0	genome.wustl.edu	37	1	248569368	248569368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	248569368	248569368	C	T	SNP	OR2T1	ENST00000366474	human	ensembl	74_37	+1	known	missense	c.73	p.H25Y	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143				77	0	0	122	23	15.8621
EXTL1	0	genome.wustl.edu	37	1	26349763	26349763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	26349763	26349763	G	A	SNP	EXTL1	ENST00000374280	human	ensembl	74_37	+1	known	missense	c.626	p.G209D	0.999	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL1	HGNC	ENSG00000158008				34	0	0	29	11	27.5
TMEM200B	0	genome.wustl.edu	37	1	29447764	29447764	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	29447764	29447764	G	T	SNP	TMEM200B	ENST00000420504	human	ensembl	74_37	-1	known	missense	c.577	p.P193T	1.000	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200B	HGNC	ENSG00000253304				30	0	0	30	7	18.9189
PUM1	0	genome.wustl.edu	37	1	31425154	31425154	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	31425154	31425154	T	C	SNP	PUM1	ENST00000426105	human	ensembl	74_37	-1	known	missense	c.2648	p.N883S	1.000	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644				71	0	0	85	12	12.3711
RNF19B	0	genome.wustl.edu	37	1	33402512	33402512	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	33402512	33402512	G	T	SNP	RNF19B	ENST00000373456	human	ensembl	74_37	-1	known	silent	c.2094	p.T698	0.995	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19B	HGNC	ENSG00000116514				153	0	0	169	42	19.9052
TRIM62	0	genome.wustl.edu	37	1	33612805	33612805	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	33612805	33612805	C	T	SNP	TRIM62	ENST00000291416	human	ensembl	74_37	-1	known	silent	c.1401	p.P467	0.012	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM62	HGNC	ENSG00000116525				131	0	0	111	17	13.2812
ZSCAN20	0	genome.wustl.edu	37	1	33957049	33957049	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	33957049	33957049	T	C	SNP	ZSCAN20	ENST00000361328	human	ensembl	74_37	+1	known	silent	c.1191	p.G397	0.995	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903				148	0	0	123	32	20.6452
CSMD2	0	genome.wustl.edu	37	1	34164385	34164385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	34164385	34164385	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.3893	p.R1298Q	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				149	0	0	126	30	19.2308
DLGAP3	0	genome.wustl.edu	37	1	35369944	35369944	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	35369944	35369944	G	A	SNP	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	silent	c.1041	p.A347	0.511	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544				111	0	0	111	29	20.7143
SFPQ	0	genome.wustl.edu	37	1	35658417	35658417	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	35658417	35658417	C	T	SNP	SFPQ	ENST00000357214	human	ensembl	74_37	-1	known	silent	c.234	p.P78	0.025	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SFPQ	HGNC	ENSG00000116560				16	0	0	10	3	23.0769
MACF1	0	genome.wustl.edu	37	1	39910383	39910383	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	39910383	39910383	T	C	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.13304	p.L4435P	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				73	0	0	69	11	13.75
PABPC4	0	genome.wustl.edu	37	1	40030385	40030385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	40030385	40030385	G	A	SNP	PABPC4	ENST00000372858	human	ensembl	74_37	-1	known	missense	c.1306	p.R436C	1.000	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4	HGNC	ENSG00000090621				95	0	0	116	25	17.7305
HPCAL4	0	genome.wustl.edu	37	1	40149648	40149648	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	40149648	40149648	G	A	SNP	HPCAL4	ENST00000372844	human	ensembl	74_37	-1	known	silent	c.339	p.D113	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	HPCAL4	HGNC	ENSG00000116983				75	0	0	68	15	18.0723
OXCT2	0	genome.wustl.edu	37	1	40236206	40236206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	40236206	40236206	G	A	SNP	OXCT2	ENST00000327582	human	ensembl	74_37	-1	known	missense	c.722	p.T241M	0.021	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT2	HGNC	ENSG00000198754				165	1	0.60241	149	22	12.8655
SLC6A9	0	genome.wustl.edu	37	1	44468043	44468043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	44468043	44468043	C	T	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	missense	c.1123	p.A375T	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517				120	1	0.826446	119	19	13.7681
SLC6A9	0	genome.wustl.edu	37	1	44468551	44468551	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	44468551	44468551	T	C	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	missense	c.916	p.I306V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517				256	0	0	260	61	19.0031
OSBPL9	0	genome.wustl.edu	37	1	52226377	52226377	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	52226377	52226377	G	A	SNP	OSBPL9	ENST00000371710	human	ensembl	74_37	+1	known	missense	c.652	p.V218I	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859				62	0	0	90	16	15.0943
USP24	0	genome.wustl.edu	37	1	55562631	55562631	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	55562631	55562631	T	C	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	missense	c.5450	p.D1817G	1.000	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				23	0	0	23	4	14.8148
NPHP4	0	genome.wustl.edu	37	1	5924015	5924015	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	5924015	5924015	G	A	SNP	NPHP4	ENST00000378156	human	ensembl	74_37	-1	known	missense	c.4075	p.R1359W	0.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697				59	0	0	43	11	20.3704
CHD5	0	genome.wustl.edu	37	1	6209393	6209393	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	6209393	6209393	G	A	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	silent	c.1074	p.C358	0.902	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				50	0	0	52	9	14.7541
FOXD3	0	genome.wustl.edu	37	1	63789108	63789108	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	63789108	63789108	G	A	SNP	FOXD3	ENST00000371116	human	ensembl	74_37	+1	known	missense	c.379	p.A127T	0.465	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXD3	HGNC	ENSG00000187140				57	0	0	46	14	23.3333
ZBTB48	0	genome.wustl.edu	37	1	6648463	6648463	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	6648463	6648463	C	T	SNP	ZBTB48	ENST00000377674	human	ensembl	74_37	+1	known	missense	c.1642	p.R548W	0.993	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB48	HGNC	ENSG00000204859				41	0	0	20	4	16.6667
KLHL21	0	genome.wustl.edu	37	1	6662470	6662470	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	6662470	6662470	G	A	SNP	KLHL21	ENST00000377658	human	ensembl	74_37	-1	known	silent	c.408	p.A136	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL21	HGNC	ENSG00000162413				14	0	0	12	4	25
SRSF11	0	genome.wustl.edu	37	1	70698020	70698020	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	70698020	70698020	C	A	SNP	SRSF11	ENST00000370950	human	ensembl	74_37	+1	known	missense	c.407	p.P136H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF11	HGNC	ENSG00000116754				118	0	0	111	16	12.5984
CTBS	0	genome.wustl.edu	37	1	85029068	85029068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	85029068	85029068	G	A	SNP	CTBS	ENST00000370630	human	ensembl	74_37	-1	known	missense	c.829	p.R277W	0.997	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CTBS	HGNC	ENSG00000117151				50	0	0	57	11	16.1765
CLCA4	0	genome.wustl.edu	37	1	87040313	87040313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	87040313	87040313	C	T	SNP	CLCA4	ENST00000370563	human	ensembl	74_37	+1	known	missense	c.1558	p.L520F	0.992	pfam_DUF1973,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602				76	0	0	91	26	22.2222
BARHL2	0	genome.wustl.edu	37	1	91180162	91180162	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	91180162	91180162	C	T	SNP	BARHL2	ENST00000370445	human	ensembl	74_37	-1	known	silent	c.777	p.V259	0.996	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	BARHL2	HGNC	ENSG00000143032				172	0	0	187	32	14.6119
CLSTN1	0	genome.wustl.edu	37	1	9804579	9804579	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	9804579	9804579	C	T	SNP	CLSTN1	ENST00000377298	human	ensembl	74_37	-1	known	missense	c.1108	p.A370T	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603				74	0	0	64	15	18.9873
HPS1	0	genome.wustl.edu	37	10	100180013	100180013	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	100180013	100180013	C	T	SNP	HPS1	ENST00000462743	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HPS1	HGNC	ENSG00000107521				34	0	0	16	5	23.8095
CHUK	0	genome.wustl.edu	37	10	101950684	101950684	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	101950684	101950684	A	C	SNP	CHUK	ENST00000370397	human	ensembl	74_37	-1	known	missense	c.2150	p.L717R	1.000	pfam_IKKbetaNEMObind	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	CHUK	HGNC	ENSG00000213341				134	0	0	202	36	15.1261
PPRC1	0	genome.wustl.edu	37	10	103899446	103899446	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	103899446	103899446	T	C	SNP	PPRC1	ENST00000278070	human	ensembl	74_37	+1	known	missense	c.1181	p.L394P	0.016	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840				242	0	0	248	52	17.3333
PSD	0	genome.wustl.edu	37	10	104170668	104170668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	104170668	104170668	C	T	SNP	PSD	ENST00000020673	human	ensembl	74_37	-1	known	missense	c.2038	p.G680R	0.983	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915				141	0	0	156	27	14.7541
MXI1	0	genome.wustl.edu	37	10	112039826	112039826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	112039826	112039826	G	A	SNP	MXI1	ENST00000332674	human	ensembl	74_37	+1	known	missense	c.707	p.R236H	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXI1	HGNC	ENSG00000119950				48	0	0	84	15	15.1515
SMC3	0	genome.wustl.edu	37	10	112356237	112356237	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	112356237	112356237	T	C	SNP	SMC3	ENST00000361804	human	ensembl	74_37	+1	known	missense	c.2045	p.V682A	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_SMC_hinge	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055				94	0	0	136	33	19.5266
VTI1A	0	genome.wustl.edu	37	10	114428721	114428721	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	114428721	114428721	G	A	SNP	VTI1A	ENST00000393077	human	ensembl	74_37	+1	known	missense	c.524	p.G175E	1.000	smart_T_SNARE_dom	pfam_Vesicle_trsprt_v-SNARE_N,superfamily_t-SNARE,smart_T_SNARE_dom	-	no_errors	VTI1A	HGNC	ENSG00000151532				120	0	0	196	33	14.4105
CASP7	0	genome.wustl.edu	37	10	115489196	115489196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	115489196	115489196	C	T	SNP	CASP7	ENST00000369321	human	ensembl	74_37	+1	known	missense	c.908	p.A303V	1.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP7	HGNC	ENSG00000165806				115	0	0	140	12	7.89474
EIF3A	0	genome.wustl.edu	37	10	120810113	120810113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	120810113	120810113	C	T	SNP	EIF3A	ENST00000369144	human	ensembl	74_37	-1	known	missense	c.2393	p.R798H	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581				245	0	0	316	80	20.202
INPP5F	0	genome.wustl.edu	37	10	121551118	121551118	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	121551118	121551118	G	A	SNP	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	silent	c.405	p.T135	0.506	pfam_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				79	0	0	136	14	9.33333
TACC2	0	genome.wustl.edu	37	10	123845448	123845448	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	123845448	123845448	C	T	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	nonsense	c.3433	p.Q1145*	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				78	0	0	58	10	14.7059
PLEKHA1	0	genome.wustl.edu	37	10	124159891	124159891	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	124159891	124159891	G	A	SNP	PLEKHA1	ENST00000368990	human	ensembl	74_37	+1	known	silent	c.231	p.A77	0.997	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA1	HGNC	ENSG00000107679				94	0	0	173	29	14.3564
CPXM2	0	genome.wustl.edu	37	10	125539757	125539757	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	125539757	125539757	A	G	SNP	CPXM2	ENST00000241305	human	ensembl	74_37	-1	known	missense	c.904	p.Y302H	1.000	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898				77	0	0	120	29	19.4631
CLRN3	0	genome.wustl.edu	37	10	129676547	129676547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	129676547	129676547	G	A	SNP	CLRN3	ENST00000368671	human	ensembl	74_37	-1	known	missense	c.547	p.L183F	1.000	NULL	NULL	-	no_errors	CLRN3	HGNC	ENSG00000180745				173	0	0	234	38	13.9706
UCMA	0	genome.wustl.edu	37	10	13276240	13276240	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	13276240	13276240	C	T	SNP	UCMA	ENST00000378681	human	ensembl	74_37	-1	known	missense	c.19	p.V7I	0.001	NULL	NULL	-	no_errors	UCMA	HGNC	ENSG00000165623				43	0	0	51	12	19.0476
KNDC1	0	genome.wustl.edu	37	10	135015099	135015099	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	135015099	135015099	A	G	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	silent	c.3090	p.G1030	0.018	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				131	0	0	131	18	12.0805
ACBD7	0	genome.wustl.edu	37	10	15120960	15120960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	15120960	15120960	C	T	SNP	ACBD7	ENST00000356189	human	ensembl	74_37	-1	known	missense	c.92	p.G31E	1.000	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,prints_Acyl-CoA-binding_protein	pfam_Acyl-CoA-binding_protein,superfamily_Acyl-CoA-binding_protein,prints_Acyl-CoA-binding_protein	-	no_errors	ACBD7	HGNC	ENSG00000176244				107	0	0	184	41	18.2222
KIAA1217	0	genome.wustl.edu	37	10	24833185	24833185	+	Silent	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	24833185	24833185	C	A	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	silent	c.4986	p.T1662	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				109	0	0	108	19	14.9606
LYZL2	0	genome.wustl.edu	37	10	30900913	30900913	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	30900913	30900913	C	T	SNP	LYZL2	ENST00000375318	human	ensembl	74_37	-1	known	missense	c.556	p.D186N	0.242	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22_lys	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL2	HGNC	ENSG00000151033				318	0	0	460	72	13.5338
ARHGAP12	0	genome.wustl.edu	37	10	32150382	32150382	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	32150382	32150382	G	A	SNP	ARHGAP12	ENST00000344936	human	ensembl	74_37	-1	known	missense	c.889	p.R297C	1.000	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_SH3_domain,smart_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP12	HGNC	ENSG00000165322				49	0	0	92	15	14.0187
ENSG00000264248	0	genome.wustl.edu	37	10	323168	323168	+	RNA	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	323168	323168	T	G	SNP	ENSG00000264248	ENST00000579524	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.863	-	-	-	no_errors	AL603831.1	Clone_based_ensembl_gene	ENSG00000264248				35	0	0	34	3	8.10811
KIF5B	0	genome.wustl.edu	37	10	32329381	32329381	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	32329381	32329381	T	C	SNP	KIF5B	ENST00000302418	human	ensembl	74_37	-1	known	silent	c.219	p.V73	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759				40	0	0	43	11	20.3704
C10orf68	0	genome.wustl.edu	37	10	33094009	33094009	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	33094009	33094009	A	G	SNP	C10orf68	ENST00000375025	human	ensembl	74_37	+1	known	missense	c.1001	p.Q334R	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076				115	0	0	170	33	16.2562
ITGB1	0	genome.wustl.edu	37	10	33208930	33208930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	33208930	33208930	G	A	SNP	ITGB1	ENST00000374956	human	ensembl	74_37	-1	known	missense	c.1352	p.T451M	0.994	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093				146	0	0	211	37	14.9194
ZNF33B	0	genome.wustl.edu	37	10	43088290	43088290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	43088290	43088290	C	T	SNP	ZNF33B	ENST00000359467	human	ensembl	74_37	-1	known	missense	c.2108	p.S703N	0.791	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33B	HGNC	ENSG00000196693				106	0	0	143	25	14.881
ZNF33B	0	genome.wustl.edu	37	10	43089580	43089580	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	43089580	43089580	C	T	SNP	ZNF33B	ENST00000359467	human	ensembl	74_37	-1	known	missense	c.818	p.S273N	0.996	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33B	HGNC	ENSG00000196693				82	0	0	114	28	19.7183
ENSG00000234864	0	genome.wustl.edu	37	10	43199722	43199722	+	RNA	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	43199722	43199722	T	C	SNP	ENSG00000234864	ENST00000439913	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AL022344.5	Clone_based_vega_gene	ENSG00000234864				28	0	0	16	8	33.3333
C10orf10	0	genome.wustl.edu	37	10	45472929	45472929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	45472929	45472929	C	T	SNP	C10orf10	ENST00000298295	human	ensembl	74_37	-1	known	missense	c.550	p.A184T	0.000	NULL	NULL	-	no_errors	C10orf10	HGNC	ENSG00000165507				149	1	0.666667	106	21	16.5354
GDF2	0	genome.wustl.edu	37	10	48414152	48414152	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	48414152	48414152	G	A	SNP	GDF2	ENST00000249598	human	ensembl	74_37	-1	known	missense	c.716	p.T239M	0.112	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802				102	0	0	84	19	18.4466
PCDH15	0	genome.wustl.edu	37	10	55996585	55996585	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	55996585	55996585	A	T	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.983	p.V328D	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				113	0	0	146	27	15.6069
ZWINT	0	genome.wustl.edu	37	10	58118436	58118436	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	58118436	58118436	A	T	SNP	ZWINT	ENST00000373944	human	ensembl	74_37	-1	known	missense	c.673	p.F225I	0.000	NULL	NULL	-	no_errors	ZWINT	HGNC	ENSG00000122952				94	0	0	79	14	15.0538
ZWINT	0	genome.wustl.edu	37	10	58118660	58118660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	58118660	58118660	G	A	SNP	ZWINT	ENST00000373944	human	ensembl	74_37	-1	known	missense	c.529	p.R177C	0.004	NULL	NULL	-	no_errors	ZWINT	HGNC	ENSG00000122952				112	0	0	158	16	9.1954
ANK3	0	genome.wustl.edu	37	10	61846455	61846455	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	61846455	61846455	C	T	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.3728	p.R1243H	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				68	0	0	102	18	15
PFKFB3	0	genome.wustl.edu	37	10	6270174	6270174	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	6270174	6270174	G	T	SNP	PFKFB3	ENST00000379782	human	ensembl	74_37	+1	known	missense	c.1531	p.A511S	1.000	NULL	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB3	HGNC	ENSG00000170525				60	0	0	87	23	20.9091
EGR2	0	genome.wustl.edu	37	10	64573145	64573145	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	64573145	64573145	T	G	SNP	EGR2	ENST00000242480	human	ensembl	74_37	-1	known	missense	c.1253	p.K418T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR2	HGNC	ENSG00000122877				142	0	0	122	25	17.0068
PALD1	0	genome.wustl.edu	37	10	72298102	72298102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	72298102	72298102	C	T	SNP	PALD1	ENST00000263563	human	ensembl	74_37	+1	known	missense	c.1390	p.P464S	1.000	NULL	smart_Tyr_Pase_cat	-	no_errors	PALD1	HGNC	ENSG00000107719				66	0	0	58	11	15.942
OIT3	0	genome.wustl.edu	37	10	74684343	74684343	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	74684343	74684343	C	T	SNP	OIT3	ENST00000334011	human	ensembl	74_37	+1	known	silent	c.1308	p.C436	1.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	pfam_ZP_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	OIT3	HGNC	ENSG00000138315				59	0	0	80	8	9.09091
TTC18	0	genome.wustl.edu	37	10	75051761	75051761	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	75051761	75051761	A	G	SNP	TTC18	ENST00000310715	human	ensembl	74_37	-1	known	silent	c.1992	p.R664	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC18	HGNC	ENSG00000156042				132	0	0	135	41	23.2955
MYOZ1	0	genome.wustl.edu	37	10	75394400	75394400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	75394400	75394400	C	T	SNP	MYOZ1	ENST00000359322	human	ensembl	74_37	-1	known	missense	c.344	p.G115D	0.010	pfam_Calsarcin-bd	pfam_Calsarcin-bd	-	no_errors	MYOZ1	HGNC	ENSG00000177791				121	0	0	86	14	14
KCNMA1	0	genome.wustl.edu	37	10	78651329	78651329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	78651329	78651329	C	T	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.3308	p.R1103H	0.997	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				64	0	0	59	12	16.9014
KCNMA1	0	genome.wustl.edu	37	10	78846314	78846314	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	78846314	78846314	G	A	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	nonsense	c.1372	p.R458*	1.000	pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				54	0	0	61	10	14.0845
ZMIZ1	0	genome.wustl.edu	37	10	81056357	81056357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	81056357	81056357	C	T	SNP	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	missense	c.1360	p.P454S	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				135	0	0	160	10	5.88235
WAPAL	0	genome.wustl.edu	37	10	88260130	88260130	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	88260130	88260130	T	C	SNP	WAPAL	ENST00000298767	human	ensembl	74_37	-1	known	silent	c.870	p.P290	1.000	NULL	pfam_WAPL_prot,superfamily_ARM-type_fold	-	no_errors	WAPAL	HGNC	ENSG00000062650				129	0	0	192	35	15.4185
ANKRD22	0	genome.wustl.edu	37	10	90582744	90582744	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	90582744	90582744	C	T	SNP	ANKRD22	ENST00000371930	human	ensembl	74_37	-1	known	missense	c.530	p.R177K	0.999	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD22	HGNC	ENSG00000152766				89	0	0	163	37	18.5
IFIT1	0	genome.wustl.edu	37	10	91162182	91162182	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	91162182	91162182	C	G	SNP	IFIT1	ENST00000371804	human	ensembl	74_37	+1	known	nonsense	c.150	p.Y50*	0.504	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1	HGNC	ENSG00000185745				73	0	0	108	22	16.9231
KIF20B	0	genome.wustl.edu	37	10	91477457	91477457	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	91477457	91477457	T	C	SNP	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	silent	c.1249	p.L417	0.938	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				77	0	0	158	25	13.6612
TNKS2	0	genome.wustl.edu	37	10	93608141	93608141	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	93608141	93608141	C	T	SNP	TNKS2	ENST00000371627	human	ensembl	74_37	+1	known	missense	c.2360	p.A787V	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854				75	0	0	114	20	14.9254
PLCE1	0	genome.wustl.edu	37	10	96066371	96066371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	96066371	96066371	G	A	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	missense	c.5810	p.R1937H	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				103	1	0.961538	89	21	19.0909
SORBS1	0	genome.wustl.edu	37	10	97174285	97174285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	97174285	97174285	G	A	SNP	SORBS1	ENST00000361941	human	ensembl	74_37	-1	known	missense	c.776	p.S259L	0.943	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637				81	0	0	91	26	22.2222
MMP8	0	genome.wustl.edu	37	11	102593283	102593283	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	102593283	102593283	G	A	SNP	MMP8	ENST00000236826	human	ensembl	74_37	-1	known	missense	c.224	p.T75M	1.000	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP8	HGNC	ENSG00000118113				119	0	0	168	31	15.5779
DYNC2H1	0	genome.wustl.edu	37	11	102988484	102988484	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	102988484	102988484	C	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	silent	c.891	p.V297	0.817	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				53	0	0	97	21	17.7966
DYNC2H1	0	genome.wustl.edu	37	11	103041695	103041695	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	103041695	103041695	T	C	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	silent	c.5232	p.N1744	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				41	0	0	39	3	7.14286
DYNC2H1	0	genome.wustl.edu	37	11	103194690	103194690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	103194690	103194690	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.12032	p.R4011H	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				30	0	0	47	15	24.1935
DYNC2H1	0	genome.wustl.edu	37	11	103270461	103270461	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	103270461	103270461	T	C	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.12248	p.I4083T	0.992	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				39	0	0	49	16	24.6154
PDGFD	0	genome.wustl.edu	37	11	103797725	103797725	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	103797725	103797725	C	T	SNP	PDGFD	ENST00000393158	human	ensembl	74_37	-1	known	missense	c.902	p.R301H	1.000	pfam_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	pfam_CUB_dom,pfam_PDGF/VEGF_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFD	HGNC	ENSG00000170962				52	0	0	60	10	14.2857
NXPE1	0	genome.wustl.edu	37	11	114400914	114400914	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	114400914	114400914	T	A	SNP	NXPE1	ENST00000424269	human	ensembl	74_37	-1	known	missense	c.816	p.E272D	0.221	NULL	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE1	HGNC	ENSG00000095110				76	0	0	86	21	19.6262
CADM1	0	genome.wustl.edu	37	11	115088664	115088664	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	115088664	115088664	T	G	SNP	CADM1	ENST00000452722	human	ensembl	74_37	-1	known	missense	c.769	p.T257P	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM1	HGNC	ENSG00000182985				54	0	0	72	13	15.2941
SCN2B	0	genome.wustl.edu	37	11	118047107	118047107	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	118047107	118047107	G	T	SNP	SCN2B	ENST00000278947	human	ensembl	74_37	-1	known	missense	c.40	p.L14I	0.999	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom,prints_Myelin_P0	-	no_errors	SCN2B	HGNC	ENSG00000149575				130	0	0	152	20	11.6279
MICAL2	0	genome.wustl.edu	37	11	12281433	12281433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	12281433	12281433	G	A	SNP	MICAL2	ENST00000256194	human	ensembl	74_37	+1	known	missense	c.3323	p.G1108D	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL2	HGNC	ENSG00000133816				60	0	0	53	10	15.873
OR10G7	0	genome.wustl.edu	37	11	123909037	123909037	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	123909037	123909037	G	A	SNP	OR10G7	ENST00000330487	human	ensembl	74_37	-1	known	silent	c.672	p.I224	0.075	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G7	HGNC	ENSG00000182634				174	0	0	137	27	16.4634
VWA5A	0	genome.wustl.edu	37	11	124007944	124007944	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	124007944	124007944	T	C	SNP	VWA5A	ENST00000392748	human	ensembl	74_37	+1	known	silent	c.1848	p.A616	0.023	NULL	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002				75	0	0	93	17	15.4545
ROBO4	0	genome.wustl.edu	37	11	124765380	124765380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	124765380	124765380	C	T	SNP	ROBO4	ENST00000306534	human	ensembl	74_37	-1	known	missense	c.1009	p.V337M	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO4	HGNC	ENSG00000154133				141	0	0	135	27	16.6667
CCDC15	0	genome.wustl.edu	37	11	124908371	124908371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	124908371	124908371	G	A	SNP	CCDC15	ENST00000344762	human	ensembl	74_37	+1	known	missense	c.2456	p.R819K	1.000	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548				12	0	0	12	3	20
FEZ1	0	genome.wustl.edu	37	11	125359542	125359542	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	125359542	125359542	G	A	SNP	FEZ1	ENST00000278919	human	ensembl	74_37	-1	known	silent	c.132	p.S44	0.322	NULL	pfam_FEZ	-	no_errors	FEZ1	HGNC	ENSG00000149557				109	0	0	116	18	13.4328
CDON	0	genome.wustl.edu	37	11	125889551	125889551	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	125889551	125889551	G	A	SNP	CDON	ENST00000392693	human	ensembl	74_37	-1	known	silent	c.459	p.R153	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CDON	HGNC	ENSG00000064309				192	0	0	254	57	18.328
SRPR	0	genome.wustl.edu	37	11	126133915	126133915	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	126133915	126133915	A	G	SNP	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	missense	c.1813	p.Y605H	1.000	pfam_SRP54_GTPase_dom,superfamily_P-loop_NTPase,smart_SRP54_GTPase_dom	pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	-	no_errors	SRPR	HGNC	ENSG00000182934				132	0	0	101	21	17.2131
MUC5B	0	genome.wustl.edu	37	11	1263956	1263956	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	1263956	1263956	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.5855	p.T1952I	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				333	0	0	229	17	6.91057
MUC5B	0	genome.wustl.edu	37	11	1263965	1263965	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	1263965	1263965	A	G	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.5864	p.K1955R	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				359	0	0	237	14	5.57769
TOLLIP	0	genome.wustl.edu	37	11	1311572	1311572	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	1311572	1311572	G	A	SNP	TOLLIP	ENST00000317204	human	ensembl	74_37	-1	known	missense	c.251	p.A84V	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_CUE,pfam_C2_dom,superfamily_C2_dom,superfamily_UBA-like,smart_C2_dom,smart_CUE,pfscan_CUE	-	no_errors	TOLLIP	HGNC	ENSG00000078902				72	0	0	61	4	6.15385
NTM	0	genome.wustl.edu	37	11	132184590	132184590	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	132184590	132184590	G	C	SNP	NTM	ENST00000539799	human	ensembl	74_37	+1	known	missense	c.927	p.M309I	0.902	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NTM	HGNC	ENSG00000182667				58	0	0	70	15	17.6471
SPATA19	0	genome.wustl.edu	37	11	133714492	133714492	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	133714492	133714492	A	G	SNP	SPATA19	ENST00000299140	human	ensembl	74_37	-1	known	missense	c.179	p.I60T	0.000	NULL	NULL	-	no_errors	SPATA19	HGNC	ENSG00000166118				90	0	0	100	11	9.90991
ACAD8	0	genome.wustl.edu	37	11	134126459	134126459	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	134126459	134126459	G	A	SNP	ACAD8	ENST00000281182	human	ensembl	74_37	+1	known	missense	c.127	p.E43K	1.000	pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD8	HGNC	ENSG00000151498				60	0	0	65	11	14.4737
NAV2	0	genome.wustl.edu	37	11	19955107	19955107	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	19955107	19955107	C	T	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	silent	c.1386	p.S462	0.018	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				91	0	0	117	22	15.8273
TSSC4	0	genome.wustl.edu	37	11	2424091	2424091	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	2424091	2424091	G	A	SNP	TSSC4	ENST00000333256	human	ensembl	74_37	+1	known	silent	c.228	p.T76	0.000	NULL	NULL	-	no_errors	TSSC4	HGNC	ENSG00000184281				16	0	0	15	10	40
BBOX1	0	genome.wustl.edu	37	11	27114773	27114773	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	27114773	27114773	A	G	SNP	BBOX1	ENST00000263182	human	ensembl	74_37	+1	known	silent	c.393	p.L131	0.856	pfam_Taurine_dOase,tigrfam_2-oxoglut_dOase	pfam_Taurine_dOase,pfam_DUF971,tigrfam_2-oxoglut_dOase	-	no_errors	BBOX1	HGNC	ENSG00000129151				82	0	0	110	17	13.3858
QSER1	0	genome.wustl.edu	37	11	32953671	32953671	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	32953671	32953671	G	A	SNP	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	silent	c.480	p.Q160	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				144	0	0	178	37	17.2093
CAPRIN1	0	genome.wustl.edu	37	11	34093453	34093453	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	34093453	34093453	C	T	SNP	CAPRIN1	ENST00000341394	human	ensembl	74_37	+1	known	silent	c.285	p.A95	0.002	NULL	pfam_Caprin-1_C	-	no_errors	CAPRIN1	HGNC	ENSG00000135387				36	0	0	77	9	10.4651
TSSC2	0	genome.wustl.edu	37	11	3423918	3423918	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	3423918	3423918	G	A	SNP	TSSC2	ENST00000529482	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TSSC2	HGNC	ENSG00000223756				40	0	0	45	8	15.0943
CAT	0	genome.wustl.edu	37	11	34478308	34478308	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	34478308	34478308	T	G	SNP	CAT	ENST00000241052	human	ensembl	74_37	+1	known	missense	c.1000	p.F334V	1.000	pfam_Catalase_core,superfamily_Catalase-like_dom,prints_Catalase	pfam_Catalase_core,pfam_Catalase_immune_responsive,superfamily_Catalase-like_dom,prints_Catalase	-	no_errors	CAT	HGNC	ENSG00000121691				75	0	0	77	21	21.4286
SLC1A2	0	genome.wustl.edu	37	11	35336618	35336618	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	35336618	35336618	T	C	SNP	SLC1A2	ENST00000278379	human	ensembl	74_37	-1	known	missense	c.262	p.M88V	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A2	HGNC	ENSG00000110436				72	0	0	117	15	11.3636
NUP98	0	genome.wustl.edu	37	11	3697439	3697439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	3697439	3697439	G	A	SNP	NUP98	ENST00000324932	human	ensembl	74_37	-1	known	missense	c.5353	p.R1785C	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713				73	0	0	97	16	14.1593
OR52M1	0	genome.wustl.edu	37	11	4566596	4566596	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	4566596	4566596	A	C	SNP	OR52M1	ENST00000360213	human	ensembl	74_37	+1	known	missense	c.176	p.Q59P	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52M1	HGNC	ENSG00000197790				92	0	0	88	24	21.4286
CHST1	0	genome.wustl.edu	37	11	45672299	45672299	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	45672299	45672299	G	A	SNP	CHST1	ENST00000308064	human	ensembl	74_37	-1	known	missense	c.175	p.R59C	0.816	superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264				125	0	0	121	19	13.5714
F2	0	genome.wustl.edu	37	11	46741326	46741326	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	46741326	46741326	C	T	SNP	F2	ENST00000311907	human	ensembl	74_37	+1	known	missense	c.154	p.R52C	0.073	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pirsf_Prothrombin/thrombin,pfscan_GLA_domain,prints_GLA_domain	pfam_Peptidase_S1,pfam_Kringle,pfam_Thrombin_light_chain,pfam_GLA_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,superfamily_GLA_domain,smart_GLA_domain,smart_Kringle,smart_Peptidase_S1,pirsf_Prothrombin/thrombin,pfscan_GLA_domain,pfscan_Kringle,pfscan_Peptidase_S1,prints_Prothrombin/thrombin,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F2	HGNC	ENSG00000180210				15	0	0	15	6	28.5714
OR52R1	0	genome.wustl.edu	37	11	4825712	4825712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	4825712	4825712	C	T	SNP	OR52R1	ENST00000380382	human	ensembl	74_37	-1	known	missense	c.136	p.V46I	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937				93	0	0	135	21	13.4615
OR51G1	0	genome.wustl.edu	37	11	4945416	4945416	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	4945416	4945416	A	G	SNP	OR51G1	ENST00000321961	human	ensembl	74_37	-1	known	missense	c.154	p.C52R	0.047	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G1	HGNC	ENSG00000176879				60	0	0	76	7	8.43373
MMP26	0	genome.wustl.edu	37	11	5011865	5011865	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	5011865	5011865	G	C	SNP	MMP26	ENST00000300762	human	ensembl	74_37	+1	known	missense	c.358	p.V120L	0.143	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pfam_Pept_M10_metallopeptidase,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,prints_Pept_M10A	-	no_errors	MMP26	HGNC	ENSG00000167346				73	0	0	103	18	14.876
OR52D1	0	genome.wustl.edu	37	11	5510494	5510494	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	5510494	5510494	C	T	SNP	OR52D1	ENST00000322641	human	ensembl	74_37	+1	known	silent	c.558	p.G186	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52D1	HGNC	ENSG00000181609				224	0	0	266	58	17.9012
OR5W2	0	genome.wustl.edu	37	11	55681486	55681486	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	55681486	55681486	A	G	SNP	OR5W2	ENST00000344514	human	ensembl	74_37	-1	known	silent	c.573	p.D191	0.105	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612				78	0	0	116	21	15.3285
OR5F1	0	genome.wustl.edu	37	11	55761559	55761559	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	55761559	55761559	A	G	SNP	OR5F1	ENST00000278409	human	ensembl	74_37	-1	known	silent	c.543	p.S181	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5F1	HGNC	ENSG00000149133				94	0	0	112	24	17.6471
SLC43A3	0	genome.wustl.edu	37	11	57182520	57182520	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	57182520	57182520	G	A	SNP	SLC43A3	ENST00000352187	human	ensembl	74_37	-1	known	missense	c.829	p.R277W	0.035	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A3	HGNC	ENSG00000134802				130	0	0	156	16	9.30233
CTNND1	0	genome.wustl.edu	37	11	57563079	57563079	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	57563079	57563079	C	A	SNP	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	missense	c.298	p.P100T	0.998	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561				21	0	0	37	9	19.5652
OR5B12	0	genome.wustl.edu	37	11	58206945	58206945	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	58206945	58206945	C	T	SNP	OR5B12	ENST00000302572	human	ensembl	74_37	-1	known	missense	c.680	p.R227H	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5B12	HGNC	ENSG00000172362				68	0	0	87	13	13
OR52E8	0	genome.wustl.edu	37	11	5878343	5878343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	5878343	5878343	C	T	SNP	OR52E8	ENST00000537935	human	ensembl	74_37	-1	known	missense	c.590	p.S197N	0.979	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E8	HGNC	ENSG00000183269				131	0	0	102	12	10.5263
FAM111B	0	genome.wustl.edu	37	11	58891683	58891683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	58891683	58891683	C	T	SNP	FAM111B	ENST00000343597	human	ensembl	74_37	+1	known	missense	c.113	p.T38I	0.056	NULL	superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111B	HGNC	ENSG00000189057				89	0	0	121	15	11.0294
OR5A2	0	genome.wustl.edu	37	11	59190023	59190023	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	59190023	59190023	A	T	SNP	OR5A2	ENST00000302040	human	ensembl	74_37	-1	known	missense	c.404	p.V135D	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5A2	HGNC	ENSG00000172324				83	0	0	76	18	19.1489
OR10V1	0	genome.wustl.edu	37	11	59481150	59481150	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	59481150	59481150	T	C	SNP	OR10V1	ENST00000307552	human	ensembl	74_37	-1	known	missense	c.169	p.T57A	0.938	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10V1	HGNC	ENSG00000172289				54	0	0	57	12	17.3913
PRPF19	0	genome.wustl.edu	37	11	60670301	60670301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	60670301	60670301	C	T	SNP	PRPF19	ENST00000227524	human	ensembl	74_37	-1	known	missense	c.299	p.R100H	1.000	pfam_Pre-mRNA_splic_Prp19	pfam_WD40_repeat,pfam_Pre-mRNA_splic_Prp19,pfam_Ubox_domain,superfamily_WD40_repeat_dom,smart_Ubox_domain,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF19	HGNC	ENSG00000110107				57	0	0	46	4	8
DDB1	0	genome.wustl.edu	37	11	61081893	61081893	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	61081893	61081893	C	T	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	silent	c.1476	p.E492	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986				268	0	0	297	49	14.1618
DAK	0	genome.wustl.edu	37	11	61111667	61111667	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	61111667	61111667	C	T	SNP	DAK	ENST00000394900	human	ensembl	74_37	+1	known	silent	c.1162	p.L388	1.000	superfamily_DhaL_dom,tigrfam_DhaK_ATP	pfam_Dak1,pfam_DhaL_dom,superfamily_DhaL_dom,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476				58	0	0	50	10	16.6667
OR56B3P	0	genome.wustl.edu	37	11	6150056	6150056	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	6150056	6150056	C	A	SNP	OR56B3P	ENST00000316517	human	ensembl	74_37	+1	known	missense	c.217	p.L73M	0.038	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR56B3P	HGNC	ENSG00000180913				38	0	0	27	5	15.625
MYRF	0	genome.wustl.edu	37	11	61533551	61533551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	61533551	61533551	C	T	SNP	MYRF	ENST00000278836	human	ensembl	74_37	+1	known	missense	c.256	p.R86C	0.922	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRF	HGNC	ENSG00000124920				43	0	0	31	5	13.8889
INTS5	0	genome.wustl.edu	37	11	62416784	62416784	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	62416784	62416784	A	G	SNP	INTS5	ENST00000330574	human	ensembl	74_37	-1	known	silent	c.768	p.A256	1.000	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085				136	0	0	138	20	12.6582
FAM160A2	0	genome.wustl.edu	37	11	6244441	6244441	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	6244441	6244441	A	G	SNP	FAM160A2	ENST00000265978	human	ensembl	74_37	-1	known	missense	c.805	p.Y269H	1.000	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009				221	0	0	214	44	17.0543
BSCL2	0	genome.wustl.edu	37	11	62458891	62458891	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	62458891	62458891	T	C	SNP	BSCL2	ENST00000360796	human	ensembl	74_37	-1	known	missense	c.866	p.Y289C	1.000	pfam_Adipose-reg_protein_Seipin	pfam_Adipose-reg_protein_Seipin	-	no_errors	BSCL2	HGNC	ENSG00000168000				65	0	0	80	15	15.7895
SLC22A6	0	genome.wustl.edu	37	11	62751957	62751957	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	62751957	62751957	C	T	SNP	SLC22A6	ENST00000377871	human	ensembl	74_37	-1	known	missense	c.206	p.R69Q	0.962	tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A6	HGNC	ENSG00000197901				96	0	0	87	23	20.9091
RPS6KA4	0	genome.wustl.edu	37	11	64126901	64126901	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	64126901	64126901	T	C	SNP	RPS6KA4	ENST00000334205	human	ensembl	74_37	+1	known	missense	c.107	p.L36P	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA4	HGNC	ENSG00000162302				50	0	0	48	11	18.6441
SLC22A12	0	genome.wustl.edu	37	11	64360339	64360339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	64360339	64360339	G	A	SNP	SLC22A12	ENST00000377574	human	ensembl	74_37	+1	known	missense	c.491	p.G164D	0.407	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A12	HGNC	ENSG00000197891				111	0	0	117	12	9.30233
PYGM	0	genome.wustl.edu	37	11	64523002	64523002	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	64523002	64523002	G	T	SNP	PYGM	ENST00000164139	human	ensembl	74_37	-1	known	missense	c.689	p.P230H	0.996	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976				79	0	0	65	13	16.6667
CDC42BPG	0	genome.wustl.edu	37	11	64601436	64601436	+	Silent	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	64601436	64601436	T	A	SNP	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	silent	c.2427	p.S809	0.000	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219				348	1	0.286533	293	78	21.0243
SPDYC	0	genome.wustl.edu	37	11	64940437	64940437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	64940437	64940437	G	A	SNP	SPDYC	ENST00000377185	human	ensembl	74_37	+1	known	missense	c.799	p.V267I	0.000	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYC	HGNC	ENSG00000204710				140	0	0	125	25	16.6667
FRMD8	0	genome.wustl.edu	37	11	65167304	65167304	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	65167304	65167304	G	A	SNP	FRMD8	ENST00000317568	human	ensembl	74_37	+1	known	missense	c.901	p.V301M	1.000	pfscan_FERM_domain	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD8	HGNC	ENSG00000126391				187	0	0	177	28	13.6585
MALAT1	0	genome.wustl.edu	37	11	65271041	65271041	+	RNA	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	65271041	65271041	A	G	SNP	MALAT1	ENST00000508832	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.298	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				83	0	0	124	26	17.3333
MAP3K11	0	genome.wustl.edu	37	11	65375801	65375801	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	65375801	65375801	G	A	SNP	MAP3K11	ENST00000309100	human	ensembl	74_37	-1	known	silent	c.858	p.Y286	0.994	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327				71	0	0	80	14	14.8936
PCNXL3	0	genome.wustl.edu	37	11	65392940	65392940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	65392940	65392940	G	A	SNP	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	missense	c.3094	p.E1032K	0.998	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				70	0	0	107	21	16.4062
RNASEH2C	0	genome.wustl.edu	37	11	65487870	65487870	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	65487870	65487870	C	T	SNP	RNASEH2C	ENST00000308418	human	ensembl	74_37	-1	known	missense	c.191	p.R64Q	1.000	pfam_RNase_H2_suC	pfam_RNase_H2_suC	-	no_errors	RNASEH2C	HGNC	ENSG00000172922				94	0	0	107	21	16.4062
SNX32	0	genome.wustl.edu	37	11	65617022	65617022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	65617022	65617022	G	A	SNP	SNX32	ENST00000308342	human	ensembl	74_37	+1	known	missense	c.110	p.R37Q	1.000	pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	pfam_Vps5_C,pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX32	HGNC	ENSG00000172803				108	0	0	135	18	11.7647
EIF1AD	0	genome.wustl.edu	37	11	65767776	65767776	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	65767776	65767776	T	C	SNP	EIF1AD	ENST00000312234	human	ensembl	74_37	-1	known	missense	c.85	p.R29G	0.999	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1	pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1	-	no_errors	EIF1AD	HGNC	ENSG00000175376				32	0	0	24	8	25
SLC29A2	0	genome.wustl.edu	37	11	66136983	66136983	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	66136983	66136983	G	T	SNP	SLC29A2	ENST00000357440	human	ensembl	74_37	-1	known	silent	c.132	p.A44	0.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_Eqnu_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	-	no_errors	SLC29A2	HGNC	ENSG00000174669				304	0	0	331	77	18.8725
TPP1	0	genome.wustl.edu	37	11	6638276	6638276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	6638276	6638276	C	T	SNP	TPP1	ENST00000299427	human	ensembl	74_37	-1	known	missense	c.617	p.R206H	0.997	superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S53_propep,pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	-	no_errors	TPP1	HGNC	ENSG00000166340				90	0	0	66	12	15.3846
PC	0	genome.wustl.edu	37	11	66616805	66616805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	66616805	66616805	C	T	SNP	PC	ENST00000393958	human	ensembl	74_37	-1	known	missense	c.3184	p.A1062T	1.000	pirsf_Pyruv_COase,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599				84	0	0	93	20	17.6991
ADRBK1	0	genome.wustl.edu	37	11	67051736	67051736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	67051736	67051736	C	T	SNP	ADRBK1	ENST00000308595	human	ensembl	74_37	+1	known	missense	c.1546	p.R516W	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,prints_GPCR_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	ADRBK1	HGNC	ENSG00000173020				152	0	0	133	28	17.3913
RAD9A	0	genome.wustl.edu	37	11	67163272	67163272	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	67163272	67163272	C	T	SNP	RAD9A	ENST00000307980	human	ensembl	74_37	+1	known	missense	c.535	p.R179C	0.997	pfam_Rad9/Ddc1,pirsf_Rad9	pfam_Rad9/Ddc1,pirsf_Rad9	-	no_errors	RAD9A	HGNC	ENSG00000172613				74	0	0	55	8	12.6984
LRP5	0	genome.wustl.edu	37	11	68201164	68201164	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	68201164	68201164	C	T	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	silent	c.3858	p.C1286	0.517	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337				229	0	0	245	33	11.8705
ANO1	0	genome.wustl.edu	37	11	70033855	70033855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	70033855	70033855	G	A	SNP	ANO1	ENST00000355303	human	ensembl	74_37	+1	known	missense	c.2706	p.M902I	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620				24	0	0	29	3	9.375
ZNF705E	0	genome.wustl.edu	37	11	71529837	71529837	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	71529837	71529837	G	A	SNP	ZNF705E	ENST00000525199	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	ZNF705E	HGNC	ENSG00000214534				79	0	0	124	24	16.2162
ARHGEF17	0	genome.wustl.edu	37	11	73076913	73076913	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	73076913	73076913	C	T	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	silent	c.5916	p.H1972	0.969	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				82	0	0	80	15	15.7895
B3GNT6	0	genome.wustl.edu	37	11	76751257	76751257	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	76751257	76751257	G	A	SNP	B3GNT6	ENST00000533140	human	ensembl	74_37	+1	known	missense	c.662	p.G221D	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT6	HGNC	ENSG00000198488				82	0	0	96	21	17.9487
TENM4	0	genome.wustl.edu	37	11	78412903	78412903	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	78412903	78412903	C	T	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	silent	c.4755	p.E1585	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				153	0	0	162	41	20.197
CCDC90B	0	genome.wustl.edu	37	11	82996916	82996916	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	82996916	82996916	C	A	SNP	CCDC90B	ENST00000529689	human	ensembl	74_37	-1	known	nonsense	c.100	p.E34*	1.000	NULL	pfam_DUF1640	-	no_errors	CCDC90B	HGNC	ENSG00000137500				23	0	0	32	2	5.88235
SYTL2	0	genome.wustl.edu	37	11	85411568	85411568	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	85411568	85411568	C	T	SNP	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	silent	c.4881	p.E1627	0.945	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501				93	0	0	107	21	16.4062
SYTL2	0	genome.wustl.edu	37	11	85437014	85437014	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	85437014	85437014	T	G	SNP	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	missense	c.2058	p.K686N	0.594	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501				101	0	0	152	31	16.9399
EED	0	genome.wustl.edu	37	11	85975274	85975274	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	85975274	85975274	T	C	SNP	EED	ENST00000263360	human	ensembl	74_37	+1	known	missense	c.695	p.V232A	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EED	HGNC	ENSG00000074266				107	0	0	165	37	18.3168
FZD4	0	genome.wustl.edu	37	11	86662374	86662374	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	86662374	86662374	G	A	SNP	FZD4	ENST00000531380	human	ensembl	74_37	-1	known	missense	c.1424	p.A475V	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD4	HGNC	ENSG00000174804				99	0	0	168	29	14.7208
NOX4	0	genome.wustl.edu	37	11	89177323	89177323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	89177323	89177323	C	T	SNP	NOX4	ENST00000413594	human	ensembl	74_37	-1	known	missense	c.490	p.A164T	0.997	pfam_Fe3_Rdtase_TM_dom	pfam_Fe_red_NAD-bd_6,pfam_Fe3_Rdtase_TM_dom,pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX4	HGNC	ENSG00000086991				129	0	0	183	25	12.0192
FAT3	0	genome.wustl.edu	37	11	92533963	92533963	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	92533963	92533963	A	G	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.7784	p.D2595G	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				41	0	0	47	9	16.0714
TAF1D	0	genome.wustl.edu	37	11	93471428	93471428	+	Silent	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	93471428	93471428	T	A	SNP	TAF1D	ENST00000323981	human	ensembl	74_37	-1	known	silent	c.306	p.T102	0.545	NULL	NULL	-	no_errors	TAF1D	HGNC	ENSG00000166012				116	0	0	216	37	14.6245
MRE11A	0	genome.wustl.edu	37	11	94197320	94197320	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	94197320	94197320	A	G	SNP	MRE11A	ENST00000323929	human	ensembl	74_37	-1	known	missense	c.1184	p.I395T	1.000	pfam_Mre11_DNA-bd,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922				75	0	0	113	15	11.7188
IPO7	0	genome.wustl.edu	37	11	9430059	9430059	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	9430059	9430059	A	G	SNP	IPO7	ENST00000379719	human	ensembl	74_37	+1	known	missense	c.193	p.T65A	1.000	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO7	HGNC	ENSG00000205339				27	0	0	43	6	12.2449
MTMR2	0	genome.wustl.edu	37	11	95580894	95580894	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	95580894	95580894	C	T	SNP	MTMR2	ENST00000346299	human	ensembl	74_37	-1	known	nonsense	c.1163	p.W388*	1.000	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR2	HGNC	ENSG00000087053				91	0	0	117	19	13.9706
CNTN5	0	genome.wustl.edu	37	11	99944909	99944909	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	99944909	99944909	A	C	SNP	CNTN5	ENST00000279463	human	ensembl	74_37	+1	known	missense	c.1463	p.K488T	0.981	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN5	HGNC	ENSG00000149972				18	0	0	32	4	11.1111
FAM71C	0	genome.wustl.edu	37	12	100042149	100042149	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	100042149	100042149	C	T	SNP	FAM71C	ENST00000324341	human	ensembl	74_37	+1	known	missense	c.197	p.A66V	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71C	HGNC	ENSG00000180219				109	0	0	122	50	29.0698
GOLGA2P5	0	genome.wustl.edu	37	12	100560276	100560276	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	100560276	100560276	G	A	SNP	GOLGA2P5	ENST00000421840	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GOLGA2B	Clone_based_vega_gene	ENSG00000238105				53	0	0	90	16	15.0943
ANO4	0	genome.wustl.edu	37	12	101493484	101493484	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	101493484	101493484	A	G	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	missense	c.2135	p.E712G	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572				64	0	0	102	13	11.3043
ASCL1	0	genome.wustl.edu	37	12	103352344	103352344	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	103352344	103352344	T	G	SNP	ASCL1	ENST00000266744	human	ensembl	74_37	+1	known	missense	c.322	p.F108V	1.000	pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ASCL1	HGNC	ENSG00000139352				21	0	0	36	9	20
POLR3B	0	genome.wustl.edu	37	12	106770229	106770229	+	Splice_Site	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	106770229	106770229	G	A	SNP	POLR3B	ENST00000228347	human	ensembl	74_37	+1	known	splice_site	c.496+1	e7+1	1.000	-	-	-	no_errors	POLR3B	HGNC	ENSG00000013503				62	0	0	113	14	11.0236
RFX4	0	genome.wustl.edu	37	12	106995084	106995084	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	106995084	106995084	G	A	SNP	RFX4	ENST00000357881	human	ensembl	74_37	+1	known	silent	c.30	p.A10	0.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783				15	0	0	15	3	16.6667
LOC101929162	0	genome.wustl.edu	37	12	108133102	108133102	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	108133102	108133102	G	A	SNP	LOC101929162	ENST00000546714	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-864J10.4	Clone_based_vega_gene	ENSG00000258136				85	0	0	75	29	27.8846
ASCL4	0	genome.wustl.edu	37	12	108169429	108169429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	108169429	108169429	G	A	SNP	ASCL4	ENST00000342331	human	ensembl	74_37	+1	known	missense	c.437	p.R146H	0.000	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ASCL4	HGNC	ENSG00000187855				16	0	0	22	11	33.3333
SART3	0	genome.wustl.edu	37	12	108929213	108929213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	108929213	108929213	C	T	SNP	SART3	ENST00000228284	human	ensembl	74_37	-1	known	missense	c.1478	p.R493Q	1.000	smart_HAT	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856				181	0	0	273	42	13.3333
ACACB	0	genome.wustl.edu	37	12	109605836	109605836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	109605836	109605836	G	A	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.922	p.A308T	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_dom,pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				81	0	0	90	9	9.09091
ACACB	0	genome.wustl.edu	37	12	109685505	109685505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	109685505	109685505	C	T	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.5666	p.S1889F	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_N	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				111	0	0	153	32	17.2973
UBE3B	0	genome.wustl.edu	37	12	109936110	109936110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	109936110	109936110	C	T	SNP	UBE3B	ENST00000342494	human	ensembl	74_37	+1	known	missense	c.892	p.R298C	0.002	NULL	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148				130	0	0	232	45	16.2455
GLTP	0	genome.wustl.edu	37	12	110293513	110293513	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	110293513	110293513	G	T	SNP	GLTP	ENST00000318348	human	ensembl	74_37	-1	known	missense	c.358	p.H120N	1.000	pfam_Glycolipid_transfer_prot_dom,superfamily_Glycolipid_transfer_prot_dom	pfam_Glycolipid_transfer_prot_dom,superfamily_Glycolipid_transfer_prot_dom	-	no_errors	GLTP	HGNC	ENSG00000139433				80	0	0	84	36	30
C12orf76	0	genome.wustl.edu	37	12	110489049	110489049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	110489049	110489049	G	A	SNP	C12orf76	ENST00000548191	human	ensembl	74_37	-1	putative	missense	c.62	p.T21M	0.000	NULL	pfam_P2X_purnocptor	-	no_errors	C12orf76	HGNC	ENSG00000174456				14	0	0	18	10	35.7143
BRAP	0	genome.wustl.edu	37	12	112120995	112120995	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	112120995	112120995	G	A	SNP	BRAP	ENST00000419234	human	ensembl	74_37	-1	known	nonsense	c.199	p.R67*	1.000	NULL	pfam_BRAP2,pfam_Znf_UBP,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_UBP,pfscan_Znf_RING,pfscan_Znf_UBP	-	no_errors	BRAP	HGNC	ENSG00000089234				108	0	0	159	69	30.2632
ACAD10	0	genome.wustl.edu	37	12	112150444	112150444	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	112150444	112150444	T	A	SNP	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	missense	c.926	p.L309Q	0.998	superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271				165	0	0	267	44	14.1479
MAPKAPK5-AS1	0	genome.wustl.edu	37	12	112280504	112280504	+	RNA	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	112280504	112280504	T	G	SNP	MAPKAPK5-AS1	ENST00000428207	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	MAPKAPK5-AS1	HGNC	ENSG00000234608				19	0	0	14	5	26.3158
NAA25	0	genome.wustl.edu	37	12	112498103	112498103	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	112498103	112498103	T	C	SNP	NAA25	ENST00000261745	human	ensembl	74_37	-1	known	missense	c.1418	p.H473R	1.000	pfam_N-acetylTrfase_B_cplx_non-cat	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300				61	0	0	96	38	28.3582
TAS2R42	0	genome.wustl.edu	37	12	11338670	11338670	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	11338670	11338670	G	A	SNP	TAS2R42	ENST00000334266	human	ensembl	74_37	-1	known	nonsense	c.874	p.R292*	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAS2R42	HGNC	ENSG00000186136				46	0	0	94	16	14.5455
DDX54	0	genome.wustl.edu	37	12	113603672	113603672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	113603672	113603672	G	A	SNP	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	missense	c.1580	p.S527L	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064				70	0	0	74	25	25.2525
TAOK3	0	genome.wustl.edu	37	12	118636898	118636898	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	118636898	118636898	G	A	SNP	TAOK3	ENST00000392533	human	ensembl	74_37	-1	known	silent	c.1152	p.D384	0.069	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090				110	0	0	124	45	26.6272
TAOK3	0	genome.wustl.edu	37	12	118637023	118637023	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	118637023	118637023	T	C	SNP	TAOK3	ENST00000392533	human	ensembl	74_37	-1	known	missense	c.1027	p.S343G	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090				51	0	0	73	21	22.3404
SRRM4	0	genome.wustl.edu	37	12	119592100	119592100	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	119592100	119592100	C	T	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	nonsense	c.1444	p.R482*	0.642	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767				35	0	0	36	12	25
CCDC60	0	genome.wustl.edu	37	12	119773056	119773056	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	119773056	119773056	G	A	SNP	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	silent	c.75	p.S25	0.007	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273				124	0	0	123	52	29.7143
SPPL3	0	genome.wustl.edu	37	12	121206174	121206174	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	121206174	121206174	G	A	SNP	SPPL3	ENST00000353487	human	ensembl	74_37	-1	known	missense	c.727	p.R243C	1.000	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	-	no_errors	SPPL3	HGNC	ENSG00000157837				220	0	0	269	50	15.674
VPS33A	0	genome.wustl.edu	37	12	122750936	122750936	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	122750936	122750936	T	C	SNP	VPS33A	ENST00000267199	human	ensembl	74_37	-1	known	missense	c.20	p.Y7C	0.997	NULL	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719				72	0	0	96	12	11.1111
ENSG00000256249	0	genome.wustl.edu	37	12	123200107	123200107	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	123200107	123200107	C	T	SNP	ENSG00000256249	ENST00000543611	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	RP11-324E6.6	Clone_based_vega_gene	ENSG00000256249				107	0	0	211	31	12.8099
PITPNM2	0	genome.wustl.edu	37	12	123480010	123480010	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	123480010	123480010	T	C	SNP	PITPNM2	ENST00000320201	human	ensembl	74_37	-1	known	silent	c.1980	p.Q660	1.000	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM2	HGNC	ENSG00000090975				134	0	0	141	26	15.5689
SETD8	0	genome.wustl.edu	37	12	123889559	123889559	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	123889559	123889559	C	T	SNP	SETD8	ENST00000330479	human	ensembl	74_37	+1	known	silent	c.786	p.Y262	0.307	pfam_SET_dom,smart_SET_dom,pirsf_Hist_H4-K20_MeTrfase,pfscan_SET_dom	pfam_SET_dom,smart_SET_dom,pirsf_Hist_H4-K20_MeTrfase,pfscan_SET_dom	-	no_errors	SETD8	HGNC	ENSG00000183955				64	0	0	61	25	29.0698
DNAH10	0	genome.wustl.edu	37	12	124267714	124267714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	124267714	124267714	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.719	p.A240V	0.004	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				98	0	0	111	26	18.9781
DNAH10	0	genome.wustl.edu	37	12	124330559	124330559	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	124330559	124330559	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.5318	p.R1773Q	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				202	0	0	180	69	27.7108
TMEM132B	0	genome.wustl.edu	37	12	126138173	126138173	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	126138173	126138173	C	T	SNP	TMEM132B	ENST00000299308	human	ensembl	74_37	+1	known	silent	c.2154	p.Y718	0.849	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364				107	0	0	157	53	25.2381
LOC101927735	0	genome.wustl.edu	37	12	129694237	129694237	+	RNA	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	129694237	129694237	C	A	SNP	LOC101927735	ENST00000542578	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.047	-	-	-	no_errors	RP11-669N7.3	Clone_based_vega_gene	ENSG00000256699				86	0	0	75	15	16.6667
FZD10	0	genome.wustl.edu	37	12	130648605	130648605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	130648605	130648605	G	A	SNP	FZD10	ENST00000229030	human	ensembl	74_37	+1	known	missense	c.1118	p.R373H	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD10	HGNC	ENSG00000111432				105	0	0	85	15	15
RIMBP2	0	genome.wustl.edu	37	12	130929742	130929742	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	130929742	130929742	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	silent	c.603	p.Y201	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709				109	0	0	128	40	23.8095
KIAA1467	0	genome.wustl.edu	37	12	13214536	13214536	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	13214536	13214536	T	C	SNP	KIAA1467	ENST00000197268	human	ensembl	74_37	+1	known	missense	c.560	p.V187A	0.950	superfamily_Quinonprotein_ADH-like_supfam	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	KIAA1467	HGNC	ENSG00000084444				37	0	0	50	10	16.6667
CHFR	0	genome.wustl.edu	37	12	133435665	133435665	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	133435665	133435665	G	A	SNP	CHFR	ENST00000266880	human	ensembl	74_37	-1	known	silent	c.936	p.H312	0.017	smart_Znf_RING,pfscan_Znf_RING	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pfscan_FHA_dom,pfscan_Znf_RING	-	no_errors	CHFR	HGNC	ENSG00000072609				54	0	0	49	20	28.9855
GRIN2B	0	genome.wustl.edu	37	12	13715771	13715771	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	13715771	13715771	G	A	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	silent	c.4401	p.G1467	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				162	0	0	287	52	15.3392
ATF7IP	0	genome.wustl.edu	37	12	14577701	14577701	+	Silent	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	14577701	14577701	C	A	SNP	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	silent	c.852	p.T284	0.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				109	0	0	174	21	10.7692
PTPRO	0	genome.wustl.edu	37	12	15669846	15669846	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	15669846	15669846	A	G	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	missense	c.1735	p.T579A	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490				144	0	0	282	16	5.36913
FBXL14	0	genome.wustl.edu	37	12	1702997	1702997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	1702997	1702997	C	T	SNP	FBXL14	ENST00000339235	human	ensembl	74_37	-1	known	missense	c.236	p.R79H	1.000	NULL	pfam_Leu-rich_rpt,pfam_F-box_dom,pfam_Leu-rich_rpt_2,superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL14	HGNC	ENSG00000171823				83	0	0	83	36	30.2521
PLEKHA5	0	genome.wustl.edu	37	12	19427737	19427737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	19427737	19427737	G	A	SNP	PLEKHA5	ENST00000317589	human	ensembl	74_37	+1	known	missense	c.1115	p.S372N	0.982	NULL	pfam_Pleckstrin_homology,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				71	0	0	137	20	12.7389
DCP1B	0	genome.wustl.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	2062350	2062350	C	G	SNP	DCP1B	ENST00000280665	human	ensembl	74_37	-1	known	missense	c.756	p.Q252H	0.000	NULL	pfam_DCP1	-	no_errors	DCP1B	HGNC	ENSG00000151065				63	0	0	117	10	7.87402
ST8SIA1	0	genome.wustl.edu	37	12	22354742	22354742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	22354742	22354742	C	T	SNP	ST8SIA1	ENST00000396037	human	ensembl	74_37	-1	known	missense	c.815	p.R272H	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA1	HGNC	ENSG00000111728				93	0	0	107	20	15.748
LINC00477	0	genome.wustl.edu	37	12	24736364	24736364	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	24736364	24736364	C	T	SNP	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				43	0	0	35	9	20.4545
CACNA1C	0	genome.wustl.edu	37	12	2706448	2706448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	2706448	2706448	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.2846	p.A949V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				187	0	0	287	44	13.2931
CACNA1C	0	genome.wustl.edu	37	12	2714915	2714915	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	2714915	2714915	A	C	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.3119	p.Q1040P	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				75	0	0	84	20	19.2308
OVCH1	0	genome.wustl.edu	37	12	29604296	29604296	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	29604296	29604296	T	G	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	missense	c.2737	p.S913R	0.001	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				30	0	0	31	10	24.3902
IPO8	0	genome.wustl.edu	37	12	30827606	30827606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	30827606	30827606	G	A	SNP	IPO8	ENST00000256079	human	ensembl	74_37	-1	known	missense	c.811	p.R271W	1.000	pfam_Cse1,superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704				182	0	0	314	53	14.4414
KIF21A	0	genome.wustl.edu	37	12	39727030	39727030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	39727030	39727030	C	T	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	missense	c.2471	p.R824H	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				172	0	0	281	74	20.8451
KDM5A	0	genome.wustl.edu	37	12	443491	443491	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	443491	443491	G	T	SNP	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	missense	c.1406	p.P469Q	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614				210	0	0	319	33	9.375
KCNA6	0	genome.wustl.edu	37	12	4919254	4919254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	4919254	4919254	G	A	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	missense	c.47	p.R16H	0.662	prints_K_chnl_volt-dep_Kv1.6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				63	0	0	118	16	11.9403
POU6F1	0	genome.wustl.edu	37	12	51584325	51584325	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	51584325	51584325	A	G	SNP	POU6F1	ENST00000333640	human	ensembl	74_37	-1	known	missense	c.611	p.V204A	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU6F1	HGNC	ENSG00000184271				214	0	0	337	46	12.0104
ANKRD33	0	genome.wustl.edu	37	12	52284676	52284676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	52284676	52284676	G	A	SNP	ANKRD33	ENST00000340970	human	ensembl	74_37	+1	known	missense	c.571	p.A191T	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD33	HGNC	ENSG00000167612				44	0	0	71	12	14.4578
KRT81	0	genome.wustl.edu	37	12	52681817	52681817	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	52681817	52681817	T	C	SNP	KRT81	ENST00000327741	human	ensembl	74_37	-1	known	missense	c.851	p.D284G	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT81	HGNC	ENSG00000205426				118	0	0	146	20	12.0482
KRT6A	0	genome.wustl.edu	37	12	52881539	52881539	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	52881539	52881539	T	A	SNP	KRT6A	ENST00000330722	human	ensembl	74_37	-1	known	missense	c.1660	p.T554S	0.280	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6A	HGNC	ENSG00000205420				129	0	0	111	45	28.8462
KRT4	0	genome.wustl.edu	37	12	53207679	53207679	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	53207679	53207679	A	G	SNP	KRT4	ENST00000293774	human	ensembl	74_37	-1	known	missense	c.386	p.L129P	0.807	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT4	HGNC	ENSG00000170477				319	0	0	428	47	9.89474
SPRYD3	0	genome.wustl.edu	37	12	53470932	53470932	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	53470932	53470932	A	C	SNP	SPRYD3	ENST00000301463	human	ensembl	74_37	-1	known	missense	c.137	p.F46C	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	SPRYD3	HGNC	ENSG00000167778				90	0	0	154	51	24.878
NCKAP1L	0	genome.wustl.edu	37	12	54903701	54903701	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	54903701	54903701	C	T	SNP	NCKAP1L	ENST00000293373	human	ensembl	74_37	+1	known	missense	c.667	p.R223C	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338				167	0	0	249	39	13.5417
ITGA7	0	genome.wustl.edu	37	12	56094815	56094815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	56094815	56094815	C	T	SNP	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	missense	c.538	p.E180K	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424				91	0	0	120	18	13.0435
DNAJC14	0	genome.wustl.edu	37	12	56221131	56221131	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	56221131	56221131	G	C	SNP	DNAJC14	ENST00000317269	human	ensembl	74_37	-1	known	missense	c.1312	p.P438A	1.000	superfamily_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC14	HGNC	ENSG00000135392				182	0	0	236	80	25.3165
ERBB3	0	genome.wustl.edu	37	12	56495050	56495050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	56495050	56495050	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.3407	p.R1136H	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				66	0	0	81	33	28.9474
SMARCC2	0	genome.wustl.edu	37	12	56566249	56566249	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	56566249	56566249	C	T	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	missense	c.1796	p.R599H	1.000	superfamily_Homeodomain-like,superfamily_Chromodomain-like,smart_SANT/Myb	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				88	0	0	109	9	7.62712
ANKRD52	0	genome.wustl.edu	37	12	56639297	56639297	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	56639297	56639297	C	T	SNP	ANKRD52	ENST00000267116	human	ensembl	74_37	-1	known	silent	c.2268	p.T756	0.079	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD52	HGNC	ENSG00000139645				92	0	0	80	33	29.2035
MYO1A	0	genome.wustl.edu	37	12	57432416	57432416	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	57432416	57432416	A	G	SNP	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	missense	c.1540	p.Y514H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866				90	0	0	115	18	13.5338
LRP1	0	genome.wustl.edu	37	12	57577934	57577934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	57577934	57577934	G	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.5996	p.R1999H	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				50	0	0	84	30	26.3158
LRP1	0	genome.wustl.edu	37	12	57597035	57597035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	57597035	57597035	G	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.10783	p.D3595N	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				24	0	0	33	4	10.8108
C12orf66	0	genome.wustl.edu	37	12	64615892	64615892	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	64615892	64615892	C	A	SNP	C12orf66	ENST00000398055	human	ensembl	74_37	-1	known	missense	c.126	p.E42D	1.000	pfam_DUF2003	pfam_DUF2003	-	no_errors	C12orf66	HGNC	ENSG00000174206				41	0	0	37	16	30.1887
LEMD3	0	genome.wustl.edu	37	12	65634842	65634842	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	65634842	65634842	A	G	SNP	LEMD3	ENST00000308330	human	ensembl	74_37	+1	known	missense	c.2280	p.I760M	1.000	NULL	pfam_Inner-Nucl-membr_MAN1,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	-	no_errors	LEMD3	HGNC	ENSG00000174106				56	0	0	96	11	10.2804
LEMD3	0	genome.wustl.edu	37	12	65639551	65639551	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	65639551	65639551	T	C	SNP	LEMD3	ENST00000308330	human	ensembl	74_37	+1	known	silent	c.2490	p.R830	0.995	NULL	pfam_Inner-Nucl-membr_MAN1,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	-	no_errors	LEMD3	HGNC	ENSG00000174106				88	0	0	135	25	15.625
DYRK2	0	genome.wustl.edu	37	12	68050891	68050891	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	68050891	68050891	C	T	SNP	DYRK2	ENST00000344096	human	ensembl	74_37	+1	known	silent	c.204	p.G68	0.878	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK2	HGNC	ENSG00000127334				64	0	0	80	27	25.2336
SLC35E3	0	genome.wustl.edu	37	12	69140182	69140182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	69140182	69140182	C	T	SNP	SLC35E3	ENST00000398004	human	ensembl	74_37	+1	known	missense	c.25	p.R9W	0.156	NULL	pfam_Tpt_PEP_trans_dom,pfam_DMT	-	no_errors	SLC35E3	HGNC	ENSG00000175782				78	0	0	64	13	16.8831
LRRC10	0	genome.wustl.edu	37	12	70004012	70004012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	70004012	70004012	G	A	SNP	LRRC10	ENST00000361484	human	ensembl	74_37	-1	known	missense	c.607	p.R203C	0.173	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC10	HGNC	ENSG00000198812				81	0	0	103	16	13.4454
ATN1	0	genome.wustl.edu	37	12	7046302	7046302	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	7046302	7046302	G	A	SNP	ATN1	ENST00000356654	human	ensembl	74_37	+1	known	silent	c.1872	p.S624	0.992	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676				147	0	0	138	66	32.3529
C1S	0	genome.wustl.edu	37	12	7177639	7177639	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	7177639	7177639	C	T	SNP	C1S	ENST00000328916	human	ensembl	74_37	+1	known	missense	c.1751	p.A584V	0.019	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	C1S	HGNC	ENSG00000182326				86	0	0	112	16	12.5
THAP2	0	genome.wustl.edu	37	12	72070679	72070679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	72070679	72070679	C	T	SNP	THAP2	ENST00000308086	human	ensembl	74_37	+1	known	missense	c.478	p.R160C	1.000	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP2	HGNC	ENSG00000173451				70	0	0	114	16	12.3077
TPH2	0	genome.wustl.edu	37	12	72355427	72355427	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	72355427	72355427	G	A	SNP	TPH2	ENST00000546576	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TPH2	HGNC	ENSG00000139287				40	0	0	76	15	16.4835
CD163L1	0	genome.wustl.edu	37	12	7527479	7527479	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	7527479	7527479	T	C	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	silent	c.3042	p.V1014	0.000	NULL	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				85	0	0	109	29	21.0145
OTOGL	0	genome.wustl.edu	37	12	80722859	80722859	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	80722859	80722859	A	G	SNP	OTOGL	ENST00000458043	human	ensembl	74_37	+1	known	silent	c.4281	p.T1427	0.493	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899				15	0	0	28	7	20
ACSS3	0	genome.wustl.edu	37	12	81532965	81532965	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	81532965	81532965	A	G	SNP	ACSS3	ENST00000548058	human	ensembl	74_37	+1	known	missense	c.701	p.Y234C	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS3	HGNC	ENSG00000111058				55	0	0	118	8	6.34921
FAM86FP	0	genome.wustl.edu	37	12	8387020	8387020	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	8387020	8387020	G	A	SNP	FAM86FP	ENST00000427893	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	FAM86FP	HGNC	ENSG00000164845				64	0	0	53	15	22.0588
SLC6A15	0	genome.wustl.edu	37	12	85260861	85260861	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	85260861	85260861	A	G	SNP	SLC6A15	ENST00000266682	human	ensembl	74_37	-1	known	missense	c.1607	p.V536A	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A15	HGNC	ENSG00000072041				41	0	0	91	11	10.7843
MGAT4C	0	genome.wustl.edu	37	12	86373639	86373639	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	86373639	86373639	A	G	SNP	MGAT4C	ENST00000393205	human	ensembl	74_37	-1	known	silent	c.952	p.L318	0.698	pfam_Glyco_transf_54	pfam_Glyco_transf_54,superfamily_LSM_dom	-	no_errors	MGAT4C	HGNC	ENSG00000182050				62	0	0	121	54	30.8571
HAL	0	genome.wustl.edu	37	12	96371742	96371742	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	96371742	96371742	A	G	SNP	HAL	ENST00000261208	human	ensembl	74_37	-1	known	missense	c.1634	p.V545A	1.000	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	pfam_Aromatic_Lyase,superfamily_L-Aspartase-like,tigrfam_HutH	-	no_errors	HAL	HGNC	ENSG00000084110				88	0	0	83	21	20.1923
CD69	0	genome.wustl.edu	37	12	9907713	9907713	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	9907713	9907713	T	C	SNP	CD69	ENST00000228434	human	ensembl	74_37	-1	known	missense	c.332	p.N111S	0.000	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD69	HGNC	ENSG00000110848				101	0	0	138	24	14.8148
SLC10A2	0	genome.wustl.edu	37	13	103703715	103703715	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	103703715	103703715	C	A	SNP	SLC10A2	ENST00000245312	human	ensembl	74_37	-1	known	missense	c.653	p.S218I	0.996	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A2	HGNC	ENSG00000125255				100	0	0	98	13	11.7117
ARGLU1	0	genome.wustl.edu	37	13	107220225	107220225	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	107220225	107220225	T	C	SNP	ARGLU1	ENST00000400198	human	ensembl	74_37	-1	known	missense	c.43	p.T15A	1.000	NULL	NULL	-	no_errors	ARGLU1	HGNC	ENSG00000134884				54	0	0	62	16	20.5128
MYO16	0	genome.wustl.edu	37	13	109793685	109793685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	109793685	109793685	C	T	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.5059	p.R1687W	0.788	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				23	0	0	15	5	25
COL4A1	0	genome.wustl.edu	37	13	110829295	110829295	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	110829295	110829295	C	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.2806	p.G936C	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				116	0	0	114	24	17.3913
PROZ	0	genome.wustl.edu	37	13	113826335	113826335	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	113826335	113826335	G	A	SNP	PROZ	ENST00000375547	human	ensembl	74_37	+1	known	silent	c.1119	p.S373	0.000	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Peptidase_S1,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	PROZ	HGNC	ENSG00000126231				56	0	0	55	16	22.5352
LATS2	0	genome.wustl.edu	37	13	21562745	21562745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	21562745	21562745	C	T	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.1174	p.A392T	0.020	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				35	0	0	31	10	24.3902
C1QTNF9	0	genome.wustl.edu	37	13	24892987	24892987	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	24892987	24892987	G	T	SNP	C1QTNF9	ENST00000332018	human	ensembl	74_37	+1	known	missense	c.198	p.K66N	0.996	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9	HGNC	ENSG00000240654				192	0	0	281	21	6.95364
MTMR6	0	genome.wustl.edu	37	13	25848300	25848300	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	25848300	25848300	C	T	SNP	MTMR6	ENST00000381801	human	ensembl	74_37	-1	known	missense	c.50	p.R17Q	1.000	NULL	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat	-	no_errors	MTMR6	HGNC	ENSG00000139505				51	0	0	67	10	12.987
POLR1D	0	genome.wustl.edu	37	13	28197194	28197194	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	28197194	28197194	A	G	SNP	POLR1D	ENST00000302979	human	ensembl	74_37	+1	known	missense	c.209	p.Y70C	1.000	pfam_RBP11-like_dimer,superfamily_RBP11-like_dimer	pfam_RBP11-like_dimer,superfamily_RBP11-like_dimer	-	no_errors	POLR1D	HGNC	ENSG00000186184				112	0	0	152	27	15.0838
HSPH1	0	genome.wustl.edu	37	13	31711655	31711655	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	31711655	31711655	T	C	SNP	HSPH1	ENST00000445273	human	ensembl	74_37	-1	known	missense	c.2383	p.N795D	0.976	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPH1	HGNC	ENSG00000120694				30	0	0	58	8	12.1212
FRY	0	genome.wustl.edu	37	13	32841309	32841309	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	32841309	32841309	T	C	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.7949	p.F2650S	0.999	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				127	0	0	148	25	14.4509
STARD13	0	genome.wustl.edu	37	13	33686968	33686968	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	33686968	33686968	G	A	SNP	STARD13	ENST00000336934	human	ensembl	74_37	-1	known	silent	c.2382	p.N794	0.003	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121				170	1	0.584795	162	26	13.8298
RFC3	0	genome.wustl.edu	37	13	34409330	34409330	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	34409330	34409330	T	C	SNP	RFC3	ENST00000380071	human	ensembl	74_37	+1	known	silent	c.855	p.C285	1.000	superfamily_DNA_pol3_clamp-load_cplx_C	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC3	HGNC	ENSG00000133119				41	0	0	65	12	15.5844
FREM2	0	genome.wustl.edu	37	13	39448722	39448722	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	39448722	39448722	C	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	silent	c.8280	p.P2760	0.001	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				75	0	0	98	8	7.54717
PROSER1	0	genome.wustl.edu	37	13	39586878	39586878	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	39586878	39586878	G	A	SNP	PROSER1	ENST00000352251	human	ensembl	74_37	-1	known	silent	c.2511	p.F837	0.984	NULL	NULL	-	no_errors	PROSER1	HGNC	ENSG00000120685				100	0	0	111	18	13.9535
GPALPP1	0	genome.wustl.edu	37	13	45602033	45602033	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	45602033	45602033	T	C	SNP	GPALPP1	ENST00000361121	human	ensembl	74_37	+1	known	silent	c.918	p.D306	1.000	pfam_DUF3752	pfam_DUF3752	-	no_errors	GPALPP1	HGNC	ENSG00000133114				74	0	0	133	24	15.2866
RB1	0	genome.wustl.edu	37	13	48955538	48955538	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	48955538	48955538	C	T	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	nonsense	c.1654	p.R552*	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687				35	0	0	63	12	16
UTP14C	0	genome.wustl.edu	37	13	52604660	52604660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	52604660	52604660	G	A	SNP	UTP14C	ENST00000521776	human	ensembl	74_37	+1	known	missense	c.1720	p.A574T	0.542	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14C	HGNC	ENSG00000253797				117	0	0	137	21	13.2911
THSD1	0	genome.wustl.edu	37	13	52952340	52952340	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	52952340	52952340	A	T	SNP	THSD1	ENST00000258613	human	ensembl	74_37	-1	known	missense	c.1765	p.S589T	0.998	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114				137	0	0	151	35	18.8172
PCDH17	0	genome.wustl.edu	37	13	58208417	58208417	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	58208417	58208417	C	T	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.1737	p.N579	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				91	0	0	97	10	9.34579
PCDH17	0	genome.wustl.edu	37	13	58299089	58299089	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	58299089	58299089	C	T	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.3141	p.C1047	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				107	0	0	110	15	12
SLITRK1	0	genome.wustl.edu	37	13	84453562	84453562	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	84453562	84453562	A	T	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.2081	p.L694H	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				42	0	0	49	16	24.6154
ADSSL1	0	genome.wustl.edu	37	14	105207519	105207519	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	105207519	105207519	C	T	SNP	ADSSL1	ENST00000332972	human	ensembl	74_37	+1	known	silent	c.861	p.H287	0.456	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSSL1	HGNC	ENSG00000185100				82	0	0	49	12	19.6721
CEP170B	0	genome.wustl.edu	37	14	105344248	105344248	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	105344248	105344248	G	A	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	silent	c.222	p.P74	0.942	pfam_FHA_dom,superfamily_SMAD_FHA_domain	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814				22	0	0	21	3	12.5
PACS2	0	genome.wustl.edu	37	14	105834470	105834470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	105834470	105834470	G	A	SNP	PACS2	ENST00000458164	human	ensembl	74_37	+1	known	missense	c.646	p.A216T	1.000	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364				49	0	0	42	17	28.8136
TEP1	0	genome.wustl.edu	37	14	20846923	20846923	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	20846923	20846923	C	A	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.5342	p.G1781V	0.201	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				130	1	0.763359	152	23	13.1429
RNASE10	0	genome.wustl.edu	37	14	20978775	20978775	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	20978775	20978775	T	G	SNP	RNASE10	ENST00000328444	human	ensembl	74_37	+1	known	missense	c.145	p.S49A	0.988	NULL	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE10	HGNC	ENSG00000182545				160	0	0	189	37	16.3717
CHD8	0	genome.wustl.edu	37	14	21861975	21861975	+	Silent	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	21861975	21861975	A	C	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	silent	c.5979	p.T1993	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				68	0	0	62	10	13.8889
RAB2B	0	genome.wustl.edu	37	14	21944703	21944703	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	21944703	21944703	G	A	SNP	RAB2B	ENST00000397762	human	ensembl	74_37	-1	known	silent	c.102	p.V34	0.343	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB2B	HGNC	ENSG00000129472				100	0	0	122	20	14.0845
IL25	0	genome.wustl.edu	37	14	23845042	23845042	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	23845042	23845042	C	T	SNP	IL25	ENST00000329715	human	ensembl	74_37	+1	known	missense	c.487	p.R163C	0.969	pfam_IL-17_fam	pfam_IL-17_fam	-	no_errors	IL25	HGNC	ENSG00000166090				179	0	0	149	19	11.3095
JPH4	0	genome.wustl.edu	37	14	24040430	24040430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	24040430	24040430	C	T	SNP	JPH4	ENST00000356300	human	ensembl	74_37	-1	known	missense	c.1510	p.A504T	0.051	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH4	HGNC	ENSG00000092051				313	0	0	330	59	15.1671
EMC9	0	genome.wustl.edu	37	14	24610160	24610160	+	Silent	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	24610160	24610160	T	G	SNP	EMC9	ENST00000216799	human	ensembl	74_37	-1	known	silent	c.213	p.G71	0.518	pfam_UPF0172	pfam_UPF0172	-	no_errors	EMC9	HGNC	ENSG00000100908				140	0	0	143	17	10.625
NFATC4	0	genome.wustl.edu	37	14	24839415	24839415	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	24839415	24839415	T	C	SNP	NFATC4	ENST00000413692	human	ensembl	74_37	+1	known	missense	c.1000	p.Y334H	1.000	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968				49	0	0	35	7	16.6667
SCFD1	0	genome.wustl.edu	37	14	31177207	31177207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	31177207	31177207	G	A	SNP	SCFD1	ENST00000458591	human	ensembl	74_37	+1	known	missense	c.1565	p.R522Q	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD1	HGNC	ENSG00000092108				79	0	0	130	15	10.3448
INSM2	0	genome.wustl.edu	37	14	36003563	36003563	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	36003563	36003563	G	A	SNP	INSM2	ENST00000307169	human	ensembl	74_37	+1	known	silent	c.105	p.P35	0.893	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	INSM2	HGNC	ENSG00000168348				67	0	0	66	9	12
PAX9	0	genome.wustl.edu	37	14	37135670	37135670	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	37135670	37135670	G	A	SNP	PAX9	ENST00000361487	human	ensembl	74_37	+1	known	missense	c.635	p.S212N	1.000	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX9	HGNC	ENSG00000198807				29	0	0	23	4	14.8148
SSTR1	0	genome.wustl.edu	37	14	38679010	38679010	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	38679010	38679010	T	G	SNP	SSTR1	ENST00000267377	human	ensembl	74_37	+1	known	missense	c.416	p.V139G	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_1,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR1	HGNC	ENSG00000139874				226	0	0	264	59	18.2663
KLHL28	0	genome.wustl.edu	37	14	45414260	45414260	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	45414260	45414260	T	C	SNP	KLHL28	ENST00000396128	human	ensembl	74_37	-1	known	missense	c.872	p.K291R	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454				94	0	0	176	28	13.7255
DAAM1	0	genome.wustl.edu	37	14	59819321	59819321	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	59819321	59819321	G	T	SNP	DAAM1	ENST00000351081	human	ensembl	74_37	+1	known	missense	c.2268	p.K756N	0.936	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DAAM1	HGNC	ENSG00000100592				24	0	0	44	6	12
HSPA2	0	genome.wustl.edu	37	14	65009256	65009256	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	65009256	65009256	C	T	SNP	HSPA2	ENST00000247207	human	ensembl	74_37	+1	known	silent	c.1689	p.G563	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803				178	0	0	160	34	17.5258
PPP1R36	0	genome.wustl.edu	37	14	65055877	65055877	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	65055877	65055877	A	G	SNP	PPP1R36	ENST00000298705	human	ensembl	74_37	+1	known	missense	c.1090	p.I364V	1.000	NULL	NULL	-	no_errors	PPP1R36	HGNC	ENSG00000165807				55	0	0	66	6	8.33333
FNTB	0	genome.wustl.edu	37	14	65507524	65507524	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	65507524	65507524	G	T	SNP	FNTB	ENST00000447296	human	ensembl	74_37	+1	known	missense	c.811	p.G271C	1.000	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,pfam_Transcrpt_activator_Churchill,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	FNTB	HGNC	ENSG00000257365				95	0	0	116	22	15.942
ZFP36L1	0	genome.wustl.edu	37	14	69262698	69262698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	69262698	69262698	G	A	SNP	ZFP36L1	ENST00000408913	human	ensembl	74_37	-1	known	missense	c.314	p.A105V	0.000	NULL	NULL	-	no_errors	ZFP36L1	HGNC	ENSG00000185650				35	0	0	20	3	13.0435
ALDH6A1	0	genome.wustl.edu	37	14	74551092	74551092	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	74551092	74551092	C	T	SNP	ALDH6A1	ENST00000553458	human	ensembl	74_37	-1	known	silent	c.6	p.A2	0.865	NULL	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_MeMal-semiAld_DH	-	no_errors	ALDH6A1	HGNC	ENSG00000119711				49	0	0	51	9	15
LTBP2	0	genome.wustl.edu	37	14	74968213	74968213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	74968213	74968213	C	T	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	missense	c.5251	p.V1751M	0.998	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				172	0	0	162	38	19
TTLL5	0	genome.wustl.edu	37	14	76156621	76156621	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	76156621	76156621	T	C	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	missense	c.458	p.L153P	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				75	0	0	131	22	14.3791
VASH1	0	genome.wustl.edu	37	14	77239634	77239634	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	77239634	77239634	G	T	SNP	VASH1	ENST00000554237	human	ensembl	74_37	+1	known	missense	c.610	p.G204C	0.000	NULL	NULL	-	no_errors	VASH1	HGNC	ENSG00000071246				17	0	0	16	3	15.7895
DIO2	0	genome.wustl.edu	37	14	80669474	80669474	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	80669474	80669474	T	G	SNP	DIO2	ENST00000422005	human	ensembl	74_37	-1	known	missense	c.380	p.N127T	1.000	pfam_Iodothyronine_deiodinase	pfam_Iodothyronine_deiodinase	-	no_errors	DIO2	HGNC	ENSG00000211448				38	0	0	37	4	9.7561
CEP128	0	genome.wustl.edu	37	14	80963868	80963868	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	80963868	80963868	A	G	SNP	CEP128	ENST00000281129	human	ensembl	74_37	-1	known	missense	c.3239	p.M1080T	0.062	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629				21	0	0	40	9	18.3673
SEL1L	0	genome.wustl.edu	37	14	81952771	81952771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	81952771	81952771	G	A	SNP	SEL1L	ENST00000336735	human	ensembl	74_37	-1	known	missense	c.1660	p.R554C	1.000	smart_Sel1-like	pfam_Sel1-like,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_Sel1-like,pfscan_FN_type2_col-bd	-	no_errors	SEL1L	HGNC	ENSG00000071537				162	0	0	209	36	14.6939
DNM1P47	0	genome.wustl.edu	37	15	102304869	102304869	+	RNA	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	102304869	102304869	T	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				25	0	0	25	5	16.6667
DNM1P47	0	genome.wustl.edu	37	15	102304883	102304883	+	RNA	SNP	C	C	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	102304883	102304883	C	G	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				29	0	0	31	4	11.4286
ATP10A	0	genome.wustl.edu	37	15	25961952	25961952	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	25961952	25961952	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	silent	c.1701	p.D567	0.010	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				161	0	0	191	26	11.9816
HERC2	0	genome.wustl.edu	37	15	28413654	28413654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	28413654	28413654	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.10312	p.D3438N	0.999	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				90	0	0	136	22	13.9241
LOC101929232	0	genome.wustl.edu	37	15	29083847	29083847	+	RNA	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	29083847	29083847	A	G	SNP	LOC101929232	ENST00000563144	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.993	-	-	-	no_errors	RP11-578F21.12	Clone_based_vega_gene	ENSG00000261377				40	0	0	62	9	12.6761
FAN1	0	genome.wustl.edu	37	15	31217442	31217442	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	31217442	31217442	T	C	SNP	FAN1	ENST00000362065	human	ensembl	74_37	+1	known	missense	c.2285	p.F762S	0.001	NULL	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690				67	0	0	92	17	15.5963
RYR3	0	genome.wustl.edu	37	15	34130198	34130198	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	34130198	34130198	C	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.12017	p.P4006Q	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				167	0	0	193	42	17.8723
RYR3	0	genome.wustl.edu	37	15	34150100	34150100	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	34150100	34150100	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	silent	c.14127	p.C4709	1.000	pfam_Ion_trans_dom	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				47	0	0	67	9	11.8421
GJD2	0	genome.wustl.edu	37	15	35045251	35045251	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	35045251	35045251	C	A	SNP	GJD2	ENST00000290374	human	ensembl	74_37	-1	known	missense	c.394	p.G132C	1.000	prints_Connexin36	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin36	-	no_errors	GJD2	HGNC	ENSG00000159248				199	0	0	224	43	16.1049
FSIP1	0	genome.wustl.edu	37	15	39910003	39910003	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	39910003	39910003	A	G	SNP	FSIP1	ENST00000350221	human	ensembl	74_37	-1	known	silent	c.1632	p.G544	0.014	NULL	NULL	-	no_errors	FSIP1	HGNC	ENSG00000150667				52	0	0	92	12	11.5385
C15orf56	0	genome.wustl.edu	37	15	40544718	40544718	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	40544718	40544718	C	A	SNP	C15orf56	ENST00000319503	human	ensembl	74_37	-1	known	missense	c.254	p.R85L	0.000	NULL	NULL	-	no_errors	C15orf56	HGNC	ENSG00000176753				54	0	0	45	8	15.0943
DISP2	0	genome.wustl.edu	37	15	40659529	40659529	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	40659529	40659529	A	G	SNP	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	missense	c.1216	p.S406G	0.966	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				371	0	0	368	90	19.6507
BAHD1	0	genome.wustl.edu	37	15	40756744	40756744	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	40756744	40756744	G	A	SNP	BAHD1	ENST00000416165	human	ensembl	74_37	+1	known	missense	c.2050	p.E684K	0.975	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHD1	HGNC	ENSG00000140320				20	0	0	17	5	22.7273
RPAP1	0	genome.wustl.edu	37	15	41812706	41812706	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	41812706	41812706	G	T	SNP	RPAP1	ENST00000304330	human	ensembl	74_37	-1	known	missense	c.3678	p.H1226Q	1.000	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932				66	0	0	42	7	14.2857
SPTBN5	0	genome.wustl.edu	37	15	42148637	42148637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	42148637	42148637	G	A	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	missense	c.8968	p.R2990W	0.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877				17	0	0	21	3	12.5
PLA2G4F	0	genome.wustl.edu	37	15	42439390	42439390	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	42439390	42439390	G	A	SNP	PLA2G4F	ENST00000397272	human	ensembl	74_37	-1	known	missense	c.1357	p.R453C	0.080	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907				73	0	0	76	15	16.4835
TGM7	0	genome.wustl.edu	37	15	43577065	43577065	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	43577065	43577065	C	T	SNP	TGM7	ENST00000452443	human	ensembl	74_37	-1	known	silent	c.951	p.T317	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495				162	0	0	165	39	19.1176
DUOX2	0	genome.wustl.edu	37	15	45392018	45392018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	45392018	45392018	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.3257	p.T1086M	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				92	0	0	91	19	17.2727
FBN1	0	genome.wustl.edu	37	15	48812973	48812973	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	48812973	48812973	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.1030	p.R344C	1.000	pfam_TB_dom,superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				48	0	0	67	18	21.1765
DMXL2	0	genome.wustl.edu	37	15	51837811	51837811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	51837811	51837811	C	T	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.899	p.R300K	0.968	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				139	0	0	186	44	19.1304
WDR72	0	genome.wustl.edu	37	15	54025236	54025236	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	54025236	54025236	T	G	SNP	WDR72	ENST00000360509	human	ensembl	74_37	-1	known	missense	c.111	p.Q37H	0.982	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415				87	0	0	134	18	11.8421
UNC13C	0	genome.wustl.edu	37	15	54306737	54306737	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	54306737	54306737	T	G	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.1637	p.L546R	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				55	0	0	63	10	13.6986
CLPX	0	genome.wustl.edu	37	15	65454965	65454965	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	65454965	65454965	C	T	SNP	CLPX	ENST00000300107	human	ensembl	74_37	-1	known	missense	c.692	p.R231Q	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA-2,pfam_Clp_ATPase_C,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	-	no_errors	CLPX	HGNC	ENSG00000166855				16	0	0	15	3	16.6667
SH2D7	0	genome.wustl.edu	37	15	78390803	78390803	+	Silent	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	78390803	78390803	C	A	SNP	SH2D7	ENST00000409568	human	ensembl	74_37	+1	putative	silent	c.102	p.A34	0.000	NULL	NULL	-	no_errors	SH2D7	HGNC	ENSG00000183476				94	0	0	73	14	16.092
KIAA1024	0	genome.wustl.edu	37	15	79750312	79750312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	79750312	79750312	G	A	SNP	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	missense	c.1823	p.R608Q	0.915	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				134	0	0	136	19	12.2581
IL16	0	genome.wustl.edu	37	15	81575034	81575034	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	81575034	81575034	T	C	SNP	IL16	ENST00000302987	human	ensembl	74_37	+1	known	missense	c.1136	p.I379T	0.984	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_IL-16	-	no_errors	IL16	HGNC	ENSG00000172349				267	0	0	298	61	16.9916
AGBL1	0	genome.wustl.edu	37	15	87531239	87531239	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	87531239	87531239	G	T	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	silent	c.3105	p.L1035	0.000	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748				176	0	0	239	39	14.0288
MRPS11	0	genome.wustl.edu	37	15	89020277	89020277	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	89020277	89020277	G	T	SNP	MRPS11	ENST00000325844	human	ensembl	74_37	+1	known	nonsense	c.469	p.G157*	1.000	pfam_Ribosomal_S11	pfam_Ribosomal_S11	-	no_errors	MRPS11	HGNC	ENSG00000181991				32	0	0	23	3	11.5385
IGF1R	0	genome.wustl.edu	37	15	99434645	99434645	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	99434645	99434645	C	T	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	silent	c.732	p.N244	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443				34	0	0	30	6	16.6667
SYNM	0	genome.wustl.edu	37	15	99670901	99670901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	99670901	99670901	G	A	SNP	SYNM	ENST00000336292	human	ensembl	74_37	+1	known	missense	c.2333	p.G778D	0.000	NULL	pfam_IF	-	no_errors	SYNM	HGNC	ENSG00000182253				47	0	0	59	12	16.9014
CLEC16A	0	genome.wustl.edu	37	16	11272536	11272536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	11272536	11272536	G	A	SNP	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	missense	c.3151	p.A1051T	0.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532				15	0	0	6	2	25
BAIAP3	0	genome.wustl.edu	37	16	1391358	1391358	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	1391358	1391358	G	A	SNP	BAIAP3	ENST00000324385	human	ensembl	74_37	+1	known	missense	c.704	p.R235H	0.048	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	BAIAP3	HGNC	ENSG00000007516				104	0	0	99	16	13.913
KIAA0430	0	genome.wustl.edu	37	16	15711343	15711343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	15711343	15711343	C	T	SNP	KIAA0430	ENST00000396368	human	ensembl	74_37	-1	known	missense	c.2770	p.V924I	0.887	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783				54	0	0	86	22	20.3704
SMG1	0	genome.wustl.edu	37	16	18853743	18853743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	18853743	18853743	G	A	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	missense	c.6253	p.R2085C	1.000	superfamily_Kinase-like_dom,superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				30	0	0	52	12	18.75
SYT17	0	genome.wustl.edu	37	16	19195130	19195130	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	19195130	19195130	C	T	SNP	SYT17	ENST00000355377	human	ensembl	74_37	+1	known	silent	c.612	p.R204	0.298	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT17	HGNC	ENSG00000103528				230	0	0	184	33	15.2074
LOC81691	0	genome.wustl.edu	37	16	20838394	20838394	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	20838394	20838394	C	T	SNP	LOC81691	ENST00000261377	human	ensembl	74_37	+1	known	missense	c.836	p.T279M	0.997	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_RRM_dom,superfamily_RNaseH-like_dom,smart_Exonuclease,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC004381.6	Clone_based_vega_gene	ENSG00000005189				75	0	0	111	20	15.2672
DNAH3	0	genome.wustl.edu	37	16	20981161	20981161	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	20981161	20981161	A	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.8411	p.I2804N	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				179	0	0	187	36	16.1435
DNAH3	0	genome.wustl.edu	37	16	21008636	21008636	+	Silent	SNP	C	C	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	21008636	21008636	C	G	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	silent	c.6570	p.G2190	0.181	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				91	0	0	105	17	13.9344
ZP2	0	genome.wustl.edu	37	16	21221008	21221008	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	21221008	21221008	G	T	SNP	ZP2	ENST00000219593	human	ensembl	74_37	-1	known	missense	c.274	p.L92M	0.026	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP2	HGNC	ENSG00000103310				81	0	0	92	16	14.8148
MLST8	0	genome.wustl.edu	37	16	2256519	2256519	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	2256519	2256519	A	G	SNP	MLST8	ENST00000397124	human	ensembl	74_37	+1	known	missense	c.203	p.Y68C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	MLST8	HGNC	ENSG00000167965				219	0	0	224	60	21.1268
ABCA3	0	genome.wustl.edu	37	16	2334407	2334407	+	Silent	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	2334407	2334407	C	A	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	silent	c.3735	p.L1245	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				151	0	0	163	20	10.929
PRKCB	0	genome.wustl.edu	37	16	23847653	23847653	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	23847653	23847653	T	G	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	missense	c.157	p.C53G	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501				174	0	0	198	29	12.7753
ZNF48	0	genome.wustl.edu	37	16	30410067	30410067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	30410067	30410067	G	A	SNP	ZNF48	ENST00000320159	human	ensembl	74_37	+1	known	missense	c.1496	p.R499H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035				203	0	0	201	36	15.1899
ZNF629	0	genome.wustl.edu	37	16	30795220	30795220	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	30795220	30795220	C	T	SNP	ZNF629	ENST00000262525	human	ensembl	74_37	-1	known	silent	c.429	p.P143	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870				34	0	0	32	8	20
ZNF646	0	genome.wustl.edu	37	16	31088406	31088406	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	31088406	31088406	T	G	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.761	p.L254R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				91	0	0	82	15	15.4639
ITGAD	0	genome.wustl.edu	37	16	31427908	31427908	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	31427908	31427908	A	G	SNP	ITGAD	ENST00000389202	human	ensembl	74_37	+1	known	missense	c.2440	p.T814A	0.054	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886				160	0	0	167	22	11.6402
ENSG00000214614	0	genome.wustl.edu	37	16	32896561	32896561	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	32896561	32896561	G	A	SNP	ENSG00000214614	ENST00000566260	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	RP11-989E6.3	Clone_based_vega_gene	ENSG00000214614				17	0	0	24	6	20
TRAP1	0	genome.wustl.edu	37	16	3724368	3724368	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	3724368	3724368	A	T	SNP	TRAP1	ENST00000246957	human	ensembl	74_37	-1	known	missense	c.1016	p.I339N	1.000	pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90_fam	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602				64	0	0	70	9	11.3924
CORO7-PAM16	0	genome.wustl.edu	37	16	4408008	4408008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	4408008	4408008	G	A	SNP	CORO7-PAM16	ENST00000572467	human	ensembl	74_37	-1	known	missense	c.2554	p.P852S	1.000	pfam_DUF1900	pfam_DUF1900,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7-PAM16	HGNC	ENSG00000103426				83	0	0	80	13	13.9785
DECR2	0	genome.wustl.edu	37	16	461435	461435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	461435	461435	G	A	SNP	DECR2	ENST00000219481	human	ensembl	74_37	+1	known	missense	c.736	p.A246T	0.999	smart_PKS/FAS_KR,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DECR2	HGNC	ENSG00000242612				94	0	0	80	19	19.1919
PPL	0	genome.wustl.edu	37	16	4935287	4935287	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	4935287	4935287	G	A	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	silent	c.3369	p.D1123	0.008	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				74	0	0	64	12	15.7895
IRX5	0	genome.wustl.edu	37	16	54966770	54966770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	54966770	54966770	C	T	SNP	IRX5	ENST00000394636	human	ensembl	74_37	+1	known	missense	c.610	p.P204S	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX5	HGNC	ENSG00000176842				199	0	0	258	48	15.6863
GNAO1	0	genome.wustl.edu	37	16	56362621	56362621	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	56362621	56362621	A	G	SNP	GNAO1	ENST00000262493	human	ensembl	74_37	+1	known	missense	c.382	p.M128V	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAO1	HGNC	ENSG00000087258				89	0	0	81	17	17.3469
GNAO1	0	genome.wustl.edu	37	16	56389030	56389030	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	56389030	56389030	G	A	SNP	GNAO1	ENST00000568375	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	GNAO1	HGNC	ENSG00000087258				32	0	0	50	12	19.3548
CNGB1	0	genome.wustl.edu	37	16	57953025	57953025	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	57953025	57953025	G	A	SNP	CNGB1	ENST00000251102	human	ensembl	74_37	-1	known	silent	c.1935	p.P645	0.952	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729				71	0	0	78	10	11.3636
MMP15	0	genome.wustl.edu	37	16	58071453	58071453	+	Silent	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	58071453	58071453	C	A	SNP	MMP15	ENST00000219271	human	ensembl	74_37	+1	known	silent	c.240	p.A80	0.986	pirsf_Pept_M10A_Metazoans,pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP15	HGNC	ENSG00000102996				174	0	0	152	29	16.0221
CAPN15	0	genome.wustl.edu	37	16	597305	597305	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	597305	597305	A	G	SNP	CAPN15	ENST00000219611	human	ensembl	74_37	+1	known	missense	c.467	p.N156S	1.000	smart_Znf_RanBP2,pfscan_Znf_RanBP2	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN15	HGNC	ENSG00000103326				10	0	0	10	2	16.6667
CMTM1	0	genome.wustl.edu	37	16	66612849	66612849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	66612849	66612849	C	T	SNP	CMTM1	ENST00000332695	human	ensembl	74_37	+1	known	missense	c.314	p.P105L	0.000	NULL	NULL	-	no_errors	CMTM1	HGNC	ENSG00000089505				125	0	0	181	24	11.7073
HSF4	0	genome.wustl.edu	37	16	67199724	67199724	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	67199724	67199724	A	G	SNP	HSF4	ENST00000264009	human	ensembl	74_37	+1	known	missense	c.335	p.Q112R	1.000	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF4	HGNC	ENSG00000102878				47	0	0	60	10	14.2857
KIAA0895L	0	genome.wustl.edu	37	16	67210807	67210807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	67210807	67210807	C	T	SNP	KIAA0895L	ENST00000290881	human	ensembl	74_37	-1	known	missense	c.1323	p.M441I	1.000	pfam_DUF1704	pfam_DUF1704	-	no_errors	KIAA0895L	HGNC	ENSG00000196123				189	0	0	167	27	13.9175
LRRC36	0	genome.wustl.edu	37	16	67404993	67404993	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	67404993	67404993	C	T	SNP	LRRC36	ENST00000329956	human	ensembl	74_37	+1	known	missense	c.1342	p.R448W	0.251	NULL	NULL	-	no_errors	LRRC36	HGNC	ENSG00000159708				131	0	0	119	30	20.1342
TSNAXIP1	0	genome.wustl.edu	37	16	67861894	67861894	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	67861894	67861894	T	C	SNP	TSNAXIP1	ENST00000388833	human	ensembl	74_37	+1	known	nonstop	c.1975	p.*659Q	0.845	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904				162	0	0	204	38	15.7025
NFATC3	0	genome.wustl.edu	37	16	68248233	68248233	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	68248233	68248233	C	G	SNP	NFATC3	ENST00000329524	human	ensembl	74_37	+1	known	missense	c.3108	p.D1036E	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736				40	0	0	50	7	12.2807
NFATC3	0	genome.wustl.edu	37	16	68248270	68248270	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	68248270	68248270	T	A	SNP	NFATC3	ENST00000329524	human	ensembl	74_37	+1	known	missense	c.3145	p.S1049T	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736				49	0	0	73	19	20.6522
SLC7A6OS	0	genome.wustl.edu	37	16	68335178	68335178	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	68335178	68335178	T	C	SNP	SLC7A6OS	ENST00000263997	human	ensembl	74_37	-1	known	nonstop	c.930	p.*310W	0.993	NULL	NULL	-	no_errors	SLC7A6OS	HGNC	ENSG00000103061				140	0	0	160	13	7.51445
TANGO6	0	genome.wustl.edu	37	16	68893886	68893886	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	68893886	68893886	C	A	SNP	TANGO6	ENST00000261778	human	ensembl	74_37	+1	known	missense	c.194	p.P65H	0.991	NULL	pfam_DUF2435,pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TANGO6	HGNC	ENSG00000103047				43	0	0	50	7	12.2807
HAS3	0	genome.wustl.edu	37	16	69148719	69148719	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	69148719	69148719	C	T	SNP	HAS3	ENST00000306560	human	ensembl	74_37	+1	known	silent	c.1212	p.G404	0.760	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS3	HGNC	ENSG00000103044				165	0	0	167	41	19.7115
ADAMTS18	0	genome.wustl.edu	37	16	77323191	77323191	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	77323191	77323191	T	C	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.3520	p.T1174A	0.995	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				214	0	0	316	42	11.7318
ADAMTS18	0	genome.wustl.edu	37	16	77353803	77353803	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	77353803	77353803	G	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.2475	p.F825L	0.972	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				110	0	0	95	22	18.8034
DYNLRB2	0	genome.wustl.edu	37	16	80577247	80577247	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	80577247	80577247	A	C	SNP	DYNLRB2	ENST00000305904	human	ensembl	74_37	+1	known	missense	c.78	p.E26D	1.000	pfam_Dynein_light-rel,smart_Dynein_light-rel,pirsf_Dynein_light_roadblock-type	pfam_Dynein_light-rel,smart_Dynein_light-rel,pirsf_Dynein_light_roadblock-type	-	no_errors	DYNLRB2	HGNC	ENSG00000168589				78	0	0	99	25	20.1613
CHTF18	0	genome.wustl.edu	37	16	839642	839642	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	839642	839642	T	C	SNP	CHTF18	ENST00000317063	human	ensembl	74_37	+1	known	missense	c.1124	p.V375A	0.965	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586				65	0	0	80	15	15.7895
KLHL36	0	genome.wustl.edu	37	16	84690644	84690644	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	84690644	84690644	C	T	SNP	KLHL36	ENST00000564996	human	ensembl	74_37	+1	known	silent	c.231	p.I77	0.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686				91	0	0	82	17	17.1717
FOXC2	0	genome.wustl.edu	37	16	86601350	86601350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	86601350	86601350	G	A	SNP	FOXC2	ENST00000320354	human	ensembl	74_37	+1	known	missense	c.409	p.D137N	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXC2	HGNC	ENSG00000176692				226	0	0	188	39	17.1806
FBXO31	0	genome.wustl.edu	37	16	87369022	87369022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	87369022	87369022	C	T	SNP	FBXO31	ENST00000311635	human	ensembl	74_37	-1	known	missense	c.884	p.R295H	0.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO31	HGNC	ENSG00000103264				49	0	0	39	10	20.4082
ZC3H18	0	genome.wustl.edu	37	16	88695188	88695188	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	88695188	88695188	A	G	SNP	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	missense	c.2492	p.K831R	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				191	0	0	211	27	11.3445
CBFA2T3	0	genome.wustl.edu	37	16	88958316	88958316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	88958316	88958316	G	A	SNP	CBFA2T3	ENST00000268679	human	ensembl	74_37	-1	known	missense	c.685	p.R229W	1.000	pfam_TAFH_NHR1,smart_TAFH_NHR1,pfscan_TAFH_NHR1,prints_ETO	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG16	-	no_errors	CBFA2T3	HGNC	ENSG00000129993				38	0	0	53	4	7.01754
CDH15	0	genome.wustl.edu	37	16	89245905	89245905	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	89245905	89245905	C	T	SNP	CDH15	ENST00000289746	human	ensembl	74_37	+1	known	missense	c.124	p.R42C	0.947	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910				139	0	0	144	22	13.253
ZNF778	0	genome.wustl.edu	37	16	89293428	89293428	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	89293428	89293428	G	T	SNP	ZNF778	ENST00000433976	human	ensembl	74_37	+1	known	silent	c.648	p.A216	0.174	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF778	HGNC	ENSG00000170100				247	0	0	249	43	14.726
PRDM7	0	genome.wustl.edu	37	16	90124855	90124855	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	90124855	90124855	T	C	SNP	PRDM7	ENST00000449207	human	ensembl	74_37	-1	known	missense	c.1321	p.T441A	0.037	NULL	pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_SET_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM7	HGNC	ENSG00000126856				143	0	0	184	34	15.5963
MYH2	0	genome.wustl.edu	37	17	10428240	10428240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	10428240	10428240	G	A	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.4805	p.S1602F	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				161	0	0	198	48	19.5122
DNAH9	0	genome.wustl.edu	37	17	11648217	11648217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	11648217	11648217	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.6215	p.R2072H	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				55	0	0	46	9	16.3636
DNAH9	0	genome.wustl.edu	37	17	11833202	11833202	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	11833202	11833202	A	C	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.11897	p.K3966T	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				31	0	0	30	4	11.7647
ARHGAP44	0	genome.wustl.edu	37	17	12887995	12887995	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	12887995	12887995	A	G	SNP	ARHGAP44	ENST00000379672	human	ensembl	74_37	+1	known	missense	c.2087	p.Q696R	0.071	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP44	HGNC	ENSG00000006740				36	0	0	41	4	8.88889
CCDC144A	0	genome.wustl.edu	37	17	16612530	16612530	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	16612530	16612530	G	C	SNP	CCDC144A	ENST00000360524	human	ensembl	74_37	+1	known	missense	c.1159	p.V387L	0.010	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160				103	0	0	137	27	16.4634
SREBF1	0	genome.wustl.edu	37	17	17722984	17722984	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	17722984	17722984	C	T	SNP	SREBF1	ENST00000355815	human	ensembl	74_37	-1	known	silent	c.669	p.P223	0.909	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF1	HGNC	ENSG00000072310				49	0	0	36	10	21.7391
GID4	0	genome.wustl.edu	37	17	17957481	17957481	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	17957481	17957481	T	A	SNP	GID4	ENST00000268719	human	ensembl	74_37	+1	known	missense	c.539	p.I180N	1.000	pfam_Vacuolar_import/degrad_Vid24	pfam_Vacuolar_import/degrad_Vid24	-	no_errors	GID4	HGNC	ENSG00000141034				79	0	0	123	17	12.1429
MYO15A	0	genome.wustl.edu	37	17	18023041	18023041	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	18023041	18023041	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	silent	c.927	p.Y309	0.089	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				152	0	0	154	25	13.9665
ALKBH5	0	genome.wustl.edu	37	17	18088243	18088243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	18088243	18088243	G	A	SNP	ALKBH5	ENST00000399138	human	ensembl	74_37	+1	known	missense	c.686	p.G229D	1.000	NULL	NULL	-	no_errors	ALKBH5	HGNC	ENSG00000091542				104	0	0	107	39	26.7123
TSR1	0	genome.wustl.edu	37	17	2228714	2228714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	2228714	2228714	G	A	SNP	TSR1	ENST00000301364	human	ensembl	74_37	-1	known	missense	c.1904	p.A635V	1.000	pfam_BMS1_TSR1_C	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721				67	0	0	76	15	16.4835
CLUH	0	genome.wustl.edu	37	17	2601706	2601706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	2601706	2601706	G	A	SNP	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	missense	c.1331	p.A444V	1.000	NULL	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361				62	0	0	52	5	8.77193
PYY2	0	genome.wustl.edu	37	17	26554430	26554430	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	26554430	26554430	C	T	SNP	PYY2	ENST00000441253	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	PYY2	HGNC	ENSG00000237575				8	0	0	6	3	33.3333
VTN	0	genome.wustl.edu	37	17	26691899	26691899	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	26691899	26691899	G	T	SNP	VTN	ENST00000431468	human	ensembl	74_37	-1	known	missense	c.188	p.A63E	0.997	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	VTN	HGNC	ENSG00000109072				53	0	0	43	12	21.8182
ALDOC	0	genome.wustl.edu	37	17	26901545	26901545	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	26901545	26901545	G	A	SNP	ALDOC	ENST00000226253	human	ensembl	74_37	-1	known	silent	c.591	p.H197	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOC	HGNC	ENSG00000109107				210	1	0.473934	256	47	15.5116
ALDOC	0	genome.wustl.edu	37	17	26901984	26901984	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	26901984	26901984	T	C	SNP	ALDOC	ENST00000226253	human	ensembl	74_37	-1	known	missense	c.365	p.E122G	1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOC	HGNC	ENSG00000109107				94	0	0	99	19	16.1017
PROCA1	0	genome.wustl.edu	37	17	27031862	27031862	+	Splice_Site	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	27031862	27031862	C	A	SNP	PROCA1	ENST00000439862	human	ensembl	74_37	-1	known	splice_site	c.98-1	e3-1	1.000	-	-	-	no_errors	PROCA1	HGNC	ENSG00000167525				65	0	0	82	14	14.5833
NF1	0	genome.wustl.edu	37	17	29556373	29556373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	29556373	29556373	C	T	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	missense	c.2740	p.R914W	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				139	0	0	197	40	16.8776
CDK5R1	0	genome.wustl.edu	37	17	30814868	30814868	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	30814868	30814868	A	G	SNP	CDK5R1	ENST00000313401	human	ensembl	74_37	+1	known	missense	c.230	p.N77S	1.000	pfam_CDK5_activator,pirsf_CDK5_activator	pfam_CDK5_activator,superfamily_Cyclin-like,pirsf_CDK5_activator	-	no_errors	CDK5R1	HGNC	ENSG00000176749				284	0	0	284	43	13.1498
SPACA3	0	genome.wustl.edu	37	17	31322545	31322545	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	31322545	31322545	C	T	SNP	SPACA3	ENST00000269053	human	ensembl	74_37	+1	known	silent	c.153	p.A51	0.000	NULL	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	SPACA3	HGNC	ENSG00000141316				114	0	0	98	25	20.3252
UNC45B	0	genome.wustl.edu	37	17	33504125	33504125	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	33504125	33504125	G	A	SNP	UNC45B	ENST00000268876	human	ensembl	74_37	+1	known	silent	c.2121	p.P707	0.991	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161				94	0	0	89	17	16.0377
SYNRG	0	genome.wustl.edu	37	17	35900495	35900495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	35900495	35900495	G	A	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	missense	c.3353	p.T1118M	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114				119	0	0	160	40	20
GPR179	0	genome.wustl.edu	37	17	36493548	36493548	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	36493548	36493548	C	T	SNP	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	missense	c.959	p.R320Q	0.992	superfamily_Growth_fac_rcpt_N_dom	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888				86	0	0	124	18	12.6761
MED1	0	genome.wustl.edu	37	17	37564730	37564730	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	37564730	37564730	C	T	SNP	MED1	ENST00000300651	human	ensembl	74_37	-1	known	silent	c.3744	p.G1248	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				106	0	0	121	22	15.3846
PSMD3	0	genome.wustl.edu	37	17	38153770	38153770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	38153770	38153770	G	A	SNP	PSMD3	ENST00000264639	human	ensembl	74_37	+1	known	missense	c.1541	p.R514Q	1.000	pfam_26S_Psome_reg_C	pfam_26S_Psome_reg_C,pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD3	HGNC	ENSG00000108344				100	0	0	126	30	19.2308
TNS4	0	genome.wustl.edu	37	17	38643661	38643661	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	38643661	38643661	T	G	SNP	TNS4	ENST00000254051	human	ensembl	74_37	-1	known	missense	c.915	p.R305S	0.026	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTB/PI_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746				69	0	0	93	14	13.0841
ZZEF1	0	genome.wustl.edu	37	17	3919631	3919631	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	3919631	3919631	T	G	SNP	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	missense	c.8131	p.N2711H	1.000	superfamily_CUB_dom	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				141	0	0	145	17	10.4938
CNP	0	genome.wustl.edu	37	17	40120342	40120342	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	40120342	40120342	A	G	SNP	CNP	ENST00000393892	human	ensembl	74_37	+1	known	missense	c.260	p.K87R	1.000	pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,pirsf_CNPase	pfam_CNPase,pfam_Zeta_toxin_domain,superfamily_RNA_ligase/cNuc_Pdiesterase,superfamily_P-loop_NTPase,pirsf_CNPase	-	no_errors	CNP	HGNC	ENSG00000173786				54	0	0	33	8	19.5122
PTRF	0	genome.wustl.edu	37	17	40575027	40575027	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	40575027	40575027	T	C	SNP	PTRF	ENST00000357037	human	ensembl	74_37	-1	known	missense	c.89	p.Q30R	0.069	NULL	NULL	-	no_errors	PTRF	HGNC	ENSG00000177469				41	0	0	40	9	18.3673
COASY	0	genome.wustl.edu	37	17	40715058	40715058	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	40715058	40715058	T	G	SNP	COASY	ENST00000590958	human	ensembl	74_37	+1	known	missense	c.505	p.C169G	1.000	NULL	pfam_Depp_CoAkinase,pfam_Cyt_trans-like,superfamily_P-loop_NTPase,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120				308	0	0	273	48	14.9533
CNTNAP1	0	genome.wustl.edu	37	17	40835908	40835908	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	40835908	40835908	T	G	SNP	CNTNAP1	ENST00000264638	human	ensembl	74_37	+1	known	missense	c.137	p.L46R	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797				50	0	0	47	9	16.0714
RPL27	0	genome.wustl.edu	37	17	41151963	41151963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	41151963	41151963	G	A	SNP	RPL27	ENST00000253788	human	ensembl	74_37	+1	known	missense	c.95	p.G32D	1.000	pfam_KOW	pfam_Ribosomal_L27e,pfam_KOW,smart_KOW	-	no_errors	RPL27	HGNC	ENSG00000131469				102	0	0	117	21	15.2174
NBR1	0	genome.wustl.edu	37	17	41343441	41343441	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	41343441	41343441	C	T	SNP	NBR1	ENST00000341165	human	ensembl	74_37	+1	known	nonsense	c.916	p.R306*	1.000	NULL	pfam_OPR_PB1,pfam_Znf_ZZ,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	NBR1	HGNC	ENSG00000188554				33	0	0	41	7	14.5833
ITGA2B	0	genome.wustl.edu	37	17	42457460	42457460	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	42457460	42457460	C	T	SNP	ITGA2B	ENST00000262407	human	ensembl	74_37	-1	known	silent	c.1662	p.L554	0.866	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961				52	0	0	42	10	19.2308
GPATCH8	0	genome.wustl.edu	37	17	42476786	42476786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	42476786	42476786	G	A	SNP	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	missense	c.2659	p.R887C	0.995	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				94	0	0	104	19	15.4472
LRRC37A4P	0	genome.wustl.edu	37	17	43592315	43592315	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	43592315	43592315	C	T	SNP	LRRC37A4P	ENST00000579913	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LRRC37A4P	HGNC	ENSG00000214425				30	0	0	27	5	15.625
CDC27	0	genome.wustl.edu	37	17	45235659	45235659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	45235659	45235659	G	A	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	missense	c.388	p.R130W	1.000	smart_TPR_repeat	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897				34	0	0	50	12	19.3548
ITGA3	0	genome.wustl.edu	37	17	48157693	48157693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	48157693	48157693	C	T	SNP	ITGA3	ENST00000320031	human	ensembl	74_37	+1	known	missense	c.2774	p.T925I	0.793	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884				50	0	0	39	11	22
ZNF594	0	genome.wustl.edu	37	17	5086549	5086549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	5086549	5086549	G	A	SNP	ZNF594	ENST00000399604	human	ensembl	74_37	-1	known	missense	c.1003	p.R335C	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626				173	0	0	249	55	18.0921
BZRAP1	0	genome.wustl.edu	37	17	56389047	56389047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	56389047	56389047	G	A	SNP	BZRAP1	ENST00000355701	human	ensembl	74_37	-1	known	missense	c.2966	p.P989L	0.230	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379				48	0	0	42	6	12.5
C17orf47	0	genome.wustl.edu	37	17	56620397	56620397	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	56620397	56620397	T	C	SNP	C17orf47	ENST00000321691	human	ensembl	74_37	-1	known	missense	c.1151	p.Y384C	0.000	NULL	NULL	-	no_errors	C17orf47	HGNC	ENSG00000181013				69	0	0	82	12	12.766
PPM1E	0	genome.wustl.edu	37	17	56833469	56833469	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	56833469	56833469	C	T	SNP	PPM1E	ENST00000308249	human	ensembl	74_37	+1	known	silent	c.111	p.P37	0.987	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1E	HGNC	ENSG00000175175				40	0	0	37	5	11.9048
TRIM37	0	genome.wustl.edu	37	17	57126658	57126658	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	57126658	57126658	G	A	SNP	TRIM37	ENST00000262294	human	ensembl	74_37	-1	known	nonsense	c.1411	p.R471*	0.554	NULL	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC	ENSG00000108395				61	0	0	86	15	14.8515
APPBP2	0	genome.wustl.edu	37	17	58525054	58525054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	58525054	58525054	C	T	SNP	APPBP2	ENST00000083182	human	ensembl	74_37	-1	known	missense	c.1646	p.R549Q	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	APPBP2	HGNC	ENSG00000062725				212	0	0	272	60	18.0723
MED13	0	genome.wustl.edu	37	17	60042538	60042538	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	60042538	60042538	A	G	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	missense	c.4673	p.F1558S	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				130	0	0	181	33	15.4206
MRC2	0	genome.wustl.edu	37	17	60766976	60766976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	60766976	60766976	C	T	SNP	MRC2	ENST00000303375	human	ensembl	74_37	+1	known	missense	c.3428	p.P1143L	0.995	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC2	HGNC	ENSG00000011028				19	0	0	12	3	20
SMURF2	0	genome.wustl.edu	37	17	62582238	62582238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	62582238	62582238	A	G	SNP	SMURF2	ENST00000262435	human	ensembl	74_37	-1	known	missense	c.451	p.C151R	1.000	superfamily_WW_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF2	HGNC	ENSG00000108854				117	0	0	188	38	16.8142
CACNG5	0	genome.wustl.edu	37	17	64873455	64873455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	64873455	64873455	G	A	SNP	CACNG5	ENST00000169565	human	ensembl	74_37	+1	known	missense	c.5	p.S2N	1.000	prints_VDCC_g5su	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g5su	-	no_errors	CACNG5	HGNC	ENSG00000075429				86	0	0	84	18	17.6471
BPTF	0	genome.wustl.edu	37	17	65909216	65909216	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	65909216	65909216	A	G	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.5594	p.E1865G	1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				118	0	0	245	18	6.84411
SLC16A13	0	genome.wustl.edu	37	17	6943212	6943212	+	Silent	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	6943212	6943212	C	A	SNP	SLC16A13	ENST00000308027	human	ensembl	74_37	+1	known	silent	c.1212	p.P404	0.893	NULL	pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A13	HGNC	ENSG00000174327				280	0	0	290	57	16.4265
SOX9	0	genome.wustl.edu	37	17	70120419	70120419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	70120419	70120419	G	A	SNP	SOX9	ENST00000245479	human	ensembl	74_37	+1	known	missense	c.1421	p.R474H	1.000	NULL	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX9	HGNC	ENSG00000125398				194	0	0	155	22	12.4294
HID1	0	genome.wustl.edu	37	17	72947725	72947725	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	72947725	72947725	A	G	SNP	HID1	ENST00000425042	human	ensembl	74_37	-1	known	silent	c.2307	p.N769	0.984	NULL	pfam_Dymeclin	-	no_errors	HID1	HGNC	ENSG00000167861				23	0	0	15	4	21.0526
HID1	0	genome.wustl.edu	37	17	72950284	72950284	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	72950284	72950284	C	T	SNP	HID1	ENST00000425042	human	ensembl	74_37	-1	known	missense	c.1813	p.A605T	0.990	NULL	pfam_Dymeclin	-	no_errors	HID1	HGNC	ENSG00000167861				19	0	0	26	3	10.3448
LLGL2	0	genome.wustl.edu	37	17	73566223	73566223	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	73566223	73566223	C	T	SNP	LLGL2	ENST00000392550	human	ensembl	74_37	+1	known	silent	c.1761	p.P587	0.944	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350				21	0	0	8	3	27.2727
EVPL	0	genome.wustl.edu	37	17	74017836	74017836	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	74017836	74017836	G	A	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	silent	c.834	p.S278	0.978	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				27	0	0	30	13	30.2326
SRP68	0	genome.wustl.edu	37	17	74042211	74042211	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	74042211	74042211	G	A	SNP	SRP68	ENST00000307877	human	ensembl	74_37	-1	known	nonsense	c.1207	p.Q403*	1.000	NULL	NULL	-	no_errors	SRP68	HGNC	ENSG00000167881				268	0	0	318	63	16.5354
ZACN	0	genome.wustl.edu	37	17	74078041	74078041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	74078041	74078041	G	A	SNP	ZACN	ENST00000334586	human	ensembl	74_37	+1	known	missense	c.959	p.R320Q	0.001	superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM	-	no_errors	ZACN	HGNC	ENSG00000186919				85	0	0	61	9	12.8571
DNAH17	0	genome.wustl.edu	37	17	76471937	76471937	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	76471937	76471937	C	T	SNP	DNAH17	ENST00000586052	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNAH17	HGNC	ENSG00000187775				35	0	0	50	6	10.7143
DNAH17	0	genome.wustl.edu	37	17	76486923	76486923	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	76486923	76486923	T	C	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	missense	c.6634	p.T2212A	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				16	0	0	14	5	26.3158
DNAH2	0	genome.wustl.edu	37	17	7684072	7684072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	7684072	7684072	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.5975	p.R1992H	0.997	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				136	1	0.729927	112	20	15.1515
CARD14	0	genome.wustl.edu	37	17	78180824	78180824	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	78180824	78180824	T	C	SNP	CARD14	ENST00000344227	human	ensembl	74_37	+1	known	missense	c.2747	p.M916T	0.007	superfamily_P-loop_NTPase,pfscan_Guanylate_kin-like	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin-like	-	no_errors	CARD14	HGNC	ENSG00000141527				79	0	0	93	17	15.4545
RNF213	0	genome.wustl.edu	37	17	78286811	78286811	+	Splice_Site	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	78286811	78286811	G	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	splice_site	c.2656-1	e14-1	0.039	-	-	-	no_errors	RNF213	HGNC	ENSG00000173821				66	0	0	74	12	13.9535
RNF213	0	genome.wustl.edu	37	17	78343450	78343450	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	78343450	78343450	C	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.12304	p.R4102C	0.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				87	0	0	84	19	18.4466
RNF213	0	genome.wustl.edu	37	17	78367414	78367414	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	78367414	78367414	C	T	SNP	RNF213	ENST00000427003	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNF213	HGNC	ENSG00000173821				14	0	0	12	4	25
C17orf70	0	genome.wustl.edu	37	17	79511073	79511073	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	79511073	79511073	G	A	SNP	C17orf70	ENST00000327787	human	ensembl	74_37	-1	known	missense	c.2384	p.A795V	0.994	NULL	NULL	-	no_errors	C17orf70	HGNC	ENSG00000185504				62	0	0	58	19	24.6753
C17orf70	0	genome.wustl.edu	37	17	79517723	79517723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	79517723	79517723	C	T	SNP	C17orf70	ENST00000327787	human	ensembl	74_37	-1	known	missense	c.797	p.G266D	0.022	NULL	NULL	-	no_errors	C17orf70	HGNC	ENSG00000185504				96	0	0	86	13	13.1313
ARHGDIA	0	genome.wustl.edu	37	17	79827069	79827069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	79827069	79827069	G	A	SNP	ARHGDIA	ENST00000269321	human	ensembl	74_37	-1	known	missense	c.395	p.T132M	1.000	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	-	no_errors	ARHGDIA	HGNC	ENSG00000141522				88	0	0	82	16	16.3265
LRRC45	0	genome.wustl.edu	37	17	79982976	79982976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	79982976	79982976	C	T	SNP	LRRC45	ENST00000306688	human	ensembl	74_37	+1	known	missense	c.454	p.R152C	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC45	HGNC	ENSG00000169683				19	0	0	22	11	33.3333
FASN	0	genome.wustl.edu	37	17	80048926	80048926	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	80048926	80048926	G	A	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	silent	c.1512	p.R504	0.237	pfam_Acyl_transferase,superfamily_Acyl_Trfase/lysoPLipase,smart_PKS_acyl_transferase	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				89	0	0	71	25	26.0417
TBCD	0	genome.wustl.edu	37	17	80858557	80858557	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	80858557	80858557	G	A	SNP	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	silent	c.1680	p.T560	0.032	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556				68	0	0	103	16	13.4454
ARHGEF15	0	genome.wustl.edu	37	17	8219405	8219405	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	8219405	8219405	C	T	SNP	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	missense	c.1643	p.P548L	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				38	0	0	27	5	15.625
APCDD1	0	genome.wustl.edu	37	18	10487675	10487675	+	Silent	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	10487675	10487675	C	A	SNP	APCDD1	ENST00000355285	human	ensembl	74_37	+1	known	silent	c.1185	p.S395	1.000	NULL	NULL	-	no_errors	APCDD1	HGNC	ENSG00000154856				122	0	0	118	28	19.1781
IMPA2	0	genome.wustl.edu	37	18	12028895	12028895	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	12028895	12028895	C	T	SNP	IMPA2	ENST00000269159	human	ensembl	74_37	+1	known	silent	c.654	p.A218	0.011	pfam_Inositol_monophosphatase	pfam_Inositol_monophosphatase,prints_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen	-	no_errors	IMPA2	HGNC	ENSG00000141401				205	0	0	192	32	14.2857
CIDEA	0	genome.wustl.edu	37	18	12264361	12264361	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	12264361	12264361	A	G	SNP	CIDEA	ENST00000320477	human	ensembl	74_37	+1	known	missense	c.239	p.D80G	1.000	pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	CIDEA	HGNC	ENSG00000176194				86	0	0	105	17	13.9344
C18orf8	0	genome.wustl.edu	37	18	21110257	21110257	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	21110257	21110257	T	C	SNP	C18orf8	ENST00000269221	human	ensembl	74_37	+1	known	missense	c.1664	p.L555P	1.000	pfam_Mic1	pfam_Mic1,superfamily_WD40_repeat_dom	-	no_errors	C18orf8	HGNC	ENSG00000141452				102	0	0	156	34	17.8947
CABYR	0	genome.wustl.edu	37	18	21736075	21736075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	21736075	21736075	G	A	SNP	CABYR	ENST00000463087	human	ensembl	74_37	+1	known	missense	c.610	p.V204I	0.019	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040				113	0	0	134	25	15.7233
METTL4	0	genome.wustl.edu	37	18	2567059	2567059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	2567059	2567059	C	T	SNP	METTL4	ENST00000574538	human	ensembl	74_37	-1	known	missense	c.157	p.V53M	0.000	NULL	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL4	HGNC	ENSG00000101574				57	0	0	75	8	9.63855
ZNF396	0	genome.wustl.edu	37	18	32953924	32953924	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	32953924	32953924	C	A	SNP	ZNF396	ENST00000589332	human	ensembl	74_37	-1	known	missense	c.333	p.W111C	0.879	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF396	HGNC	ENSG00000186496				131	0	0	175	42	19.3548
FHOD3	0	genome.wustl.edu	37	18	34297930	34297930	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	34297930	34297930	G	T	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.2144	p.G715V	0.001	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				117	1	0.847458	74	21	22.1053
SETBP1	0	genome.wustl.edu	37	18	42531797	42531797	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	42531797	42531797	C	A	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.2492	p.P831Q	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				95	0	0	94	8	7.84314
SLC14A2	0	genome.wustl.edu	37	18	43217142	43217142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	43217142	43217142	C	T	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	missense	c.838	p.P280S	0.998	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				91	0	0	82	15	15.4639
LIPG	0	genome.wustl.edu	37	18	47101749	47101749	+	Silent	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	47101749	47101749	T	G	SNP	LIPG	ENST00000261292	human	ensembl	74_37	+1	known	silent	c.582	p.P194	0.982	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase,prints_Lipo_Lipase,prints_Lipase_hep	-	no_errors	LIPG	HGNC	ENSG00000101670				50	0	0	37	18	32.7273
ENSG00000173213	0	genome.wustl.edu	37	18	49008	49008	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	49008	49008	G	T	SNP	ENSG00000173213	ENST00000308911	human	ensembl	74_37	-1	known	missense	c.209	p.P70Q	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	RP11-683L23.1	Clone_based_vega_gene	ENSG00000173213				139	0	0	152	25	14.1243
DCC	0	genome.wustl.edu	37	18	51013277	51013277	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	51013277	51013277	C	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.3847	p.P1283T	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				146	0	0	156	23	12.8492
EPB41L3	0	genome.wustl.edu	37	18	5394733	5394733	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	5394733	5394733	T	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.3213	p.K1071N	1.000	pirsf_Band_41_protein,pfam_Band_4.1_C	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				79	0	0	125	22	14.966
ZNF532	0	genome.wustl.edu	37	18	56587380	56587380	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	56587380	56587380	T	C	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	missense	c.1861	p.C621R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657				70	0	0	61	20	24.6914
CDH20	0	genome.wustl.edu	37	18	59166590	59166590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	59166590	59166590	C	T	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.418	p.R140W	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				46	0	0	45	6	11.7647
L3MBTL4	0	genome.wustl.edu	37	18	6215765	6215765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	6215765	6215765	G	A	SNP	L3MBTL4	ENST00000284898	human	ensembl	74_37	-1	known	missense	c.854	p.A285V	0.997	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655				15	0	0	33	3	8.33333
LAMA1	0	genome.wustl.edu	37	18	7013871	7013871	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	7013871	7013871	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.3306	p.C1102	0.888	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				27	0	0	23	3	11.5385
FBXO15	0	genome.wustl.edu	37	18	71796797	71796797	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	71796797	71796797	A	G	SNP	FBXO15	ENST00000419743	human	ensembl	74_37	-1	known	missense	c.628	p.Y210H	0.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO15	HGNC	ENSG00000141665				36	0	0	46	8	14.8148
ZNF407	0	genome.wustl.edu	37	18	72775630	72775630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	72775630	72775630	G	A	SNP	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	missense	c.5953	p.A1985T	0.103	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				30	0	0	26	7	21.2121
MBP	0	genome.wustl.edu	37	18	74729102	74729102	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	74729102	74729102	G	T	SNP	MBP	ENST00000355994	human	ensembl	74_37	-1	known	missense	c.262	p.R88S	0.905	NULL	pfam_Myelin_BP,prints_Myelin_BP	-	no_errors	MBP	HGNC	ENSG00000197971				92	0	0	100	24	19.3548
GALR1	0	genome.wustl.edu	37	18	74963088	74963088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	74963088	74963088	G	A	SNP	GALR1	ENST00000299727	human	ensembl	74_37	+1	known	missense	c.584	p.R195H	0.311	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GAL1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GAL1_rcpt,prints_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_NPY_rcpt	-	no_errors	GALR1	HGNC	ENSG00000166573				165	1	0.60241	175	32	15.4589
PARD6G	0	genome.wustl.edu	37	18	77918110	77918110	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	77918110	77918110	G	A	SNP	PARD6G	ENST00000353265	human	ensembl	74_37	-1	known	silent	c.675	p.A225	0.001	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6G	HGNC	ENSG00000178184				66	0	0	80	14	14.8936
RAB12	0	genome.wustl.edu	37	18	8635547	8635547	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	8635547	8635547	C	T	SNP	RAB12	ENST00000329286	human	ensembl	74_37	+1	known	missense	c.443	p.A148V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB12	HGNC	ENSG00000206418				42	0	0	44	5	10.2041
SOGA2	0	genome.wustl.edu	37	18	8784549	8784549	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	8784549	8784549	A	G	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	missense	c.1439	p.H480R	0.000	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				196	0	0	226	42	15.6716
GRIN3B	0	genome.wustl.edu	37	19	1004918	1004918	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	1004918	1004918	G	A	SNP	GRIN3B	ENST00000234389	human	ensembl	74_37	+1	known	missense	c.1418	p.R473H	0.000	pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN3B	HGNC	ENSG00000116032				174	0	0	140	31	18.1287
KRI1	0	genome.wustl.edu	37	19	10664802	10664802	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	10664802	10664802	G	T	SNP	KRI1	ENST00000312962	human	ensembl	74_37	-1	known	missense	c.1955	p.P652H	0.127	NULL	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347				194	0	0	218	38	14.8438
SMARCA4	0	genome.wustl.edu	37	19	11121099	11121099	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	11121099	11121099	G	T	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.2166	p.Q722H	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				189	0	0	174	37	17.5355
SMARCA4	0	genome.wustl.edu	37	19	11123693	11123693	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	11123693	11123693	G	T	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.2343	p.M781I	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				74	0	0	95	13	12.037
ZNF653	0	genome.wustl.edu	37	19	11606948	11606948	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	11606948	11606948	C	T	SNP	ZNF653	ENST00000293771	human	ensembl	74_37	-1	known	missense	c.376	p.V126M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF653	HGNC	ENSG00000161914				50	0	0	48	4	7.69231
CIRBP-AS1	0	genome.wustl.edu	37	19	1269881	1269881	+	RNA	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	1269881	1269881	T	C	SNP	CIRBP-AS1	ENST00000585832	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CIRBP-AS1	HGNC	ENSG00000267493				46	0	0	39	8	17.0213
CACNA1A	0	genome.wustl.edu	37	19	13419248	13419248	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	13419248	13419248	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.1763	p.R588H	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				21	0	0	45	8	15.0943
CC2D1A	0	genome.wustl.edu	37	19	14034594	14034594	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	14034594	14034594	G	A	SNP	CC2D1A	ENST00000318003	human	ensembl	74_37	+1	known	missense	c.1910	p.R637H	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1A	HGNC	ENSG00000132024				157	0	0	131	17	11.4865
PODNL1	0	genome.wustl.edu	37	19	14046600	14046600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	14046600	14046600	G	A	SNP	PODNL1	ENST00000339560	human	ensembl	74_37	-1	known	missense	c.449	p.A150V	0.014	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODNL1	HGNC	ENSG00000132000				32	0	0	33	6	15.3846
CYP4F3	0	genome.wustl.edu	37	19	15760019	15760019	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	15760019	15760019	T	C	SNP	CYP4F3	ENST00000221307	human	ensembl	74_37	+1	known	missense	c.575	p.F192S	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F3	HGNC	ENSG00000186529				137	0	0	194	14	6.73077
CYP4F11	0	genome.wustl.edu	37	19	16040318	16040318	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	16040318	16040318	G	T	SNP	CYP4F11	ENST00000248041	human	ensembl	74_37	-1	known	missense	c.292	p.L98I	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903				309	0	0	325	47	12.6344
SIN3B	0	genome.wustl.edu	37	19	16986971	16986971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	16986971	16986971	C	T	SNP	SIN3B	ENST00000379803	human	ensembl	74_37	+1	known	missense	c.2794	p.R932C	0.976	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511				41	0	0	47	6	11.3208
ANKLE1	0	genome.wustl.edu	37	19	17394149	17394149	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	17394149	17394149	C	A	SNP	ANKLE1	ENST00000394458	human	ensembl	74_37	+1	known	missense	c.576	p.S192R	0.014	NULL	pfam_Ankyrin_rpt,pfam_LEM_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_LEM/LEM-like_dom,superfamily_Lactate_DH/Glyco_Ohase_4_C,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_LEM_dom	-	no_errors	ANKLE1	HGNC	ENSG00000160117				198	0	0	164	38	18.8119
MAP1S	0	genome.wustl.edu	37	19	17838610	17838610	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	17838610	17838610	C	T	SNP	MAP1S	ENST00000324096	human	ensembl	74_37	+1	known	missense	c.2417	p.A806V	0.009	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479				39	0	0	28	7	20
ATP8B3	0	genome.wustl.edu	37	19	1802642	1802642	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	1802642	1802642	T	C	SNP	ATP8B3	ENST00000539485	human	ensembl	74_37	-1	known	missense	c.907	p.T303A	0.025	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B3	HGNC	ENSG00000130270				38	0	0	29	6	17.1429
GDF15	0	genome.wustl.edu	37	19	18499232	18499232	+	Silent	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	18499232	18499232	A	C	SNP	GDF15	ENST00000252809	human	ensembl	74_37	+1	known	silent	c.414	p.T138	0.838	NULL	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF15	HGNC	ENSG00000130513				37	0	0	35	3	7.89474
COMP	0	genome.wustl.edu	37	19	18900795	18900795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	18900795	18900795	C	T	SNP	COMP	ENST00000222271	human	ensembl	74_37	-1	known	missense	c.346	p.A116T	0.007	smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd_dom,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664				30	0	0	27	4	12.9032
NDUFA13	0	genome.wustl.edu	37	19	19638863	19638863	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	19638863	19638863	C	T	SNP	NDUFA13	ENST00000252576	human	ensembl	74_37	+1	known	silent	c.612	p.I204	0.001	pfam_GRIM-19	pfam_GRIM-19	-	no_errors	NDUFA13	HGNC	ENSG00000186010				37	0	0	36	8	18.1818
CSNK1G2	0	genome.wustl.edu	37	19	1978697	1978697	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	1978697	1978697	T	G	SNP	CSNK1G2	ENST00000255641	human	ensembl	74_37	+1	known	missense	c.395	p.L132R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Casein_kinase-1_gamma_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1G2	HGNC	ENSG00000133275				19	0	0	30	5	14.2857
BTBD2	0	genome.wustl.edu	37	19	1990129	1990129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	1990129	1990129	G	A	SNP	BTBD2	ENST00000255608	human	ensembl	74_37	-1	known	missense	c.862	p.R288C	0.996	pfam_BACK,smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD2	HGNC	ENSG00000133243				24	0	0	37	10	21.2766
ZNF93	0	genome.wustl.edu	37	19	20045515	20045515	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	20045515	20045515	A	C	SNP	ZNF93	ENST00000343769	human	ensembl	74_37	+1	known	missense	c.1751	p.K584T	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF93	HGNC	ENSG00000184635				46	0	0	70	18	20.4545
ZNF430	0	genome.wustl.edu	37	19	21216290	21216290	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	21216290	21216290	T	A	SNP	ZNF430	ENST00000261560	human	ensembl	74_37	+1	known	missense	c.125	p.I42K	0.145	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF430	HGNC	ENSG00000118620				128	0	0	217	34	13.5458
DOT1L	0	genome.wustl.edu	37	19	2191077	2191077	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	2191077	2191077	C	A	SNP	DOT1L	ENST00000398665	human	ensembl	74_37	+1	known	missense	c.331	p.L111M	1.000	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885				47	0	0	36	4	10
ZNF676	0	genome.wustl.edu	37	19	22362819	22362819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	22362819	22362819	C	T	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	missense	c.1700	p.G567D	0.996	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				63	0	0	109	19	14.8438
LMNB2	0	genome.wustl.edu	37	19	2433843	2433843	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	2433843	2433843	A	G	SNP	LMNB2	ENST00000325327	human	ensembl	74_37	-1	known	missense	c.1463	p.L488P	1.000	pfam_Lamin_tail_dom	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNB2	HGNC	ENSG00000176619				122	0	0	129	31	19.375
THOP1	0	genome.wustl.edu	37	19	2807510	2807510	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	2807510	2807510	G	A	SNP	THOP1	ENST00000307741	human	ensembl	74_37	+1	known	silent	c.957	p.A319	0.882	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	THOP1	HGNC	ENSG00000172009				39	0	0	35	12	25.5319
CEP89	0	genome.wustl.edu	37	19	33370222	33370222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	33370222	33370222	C	T	SNP	CEP89	ENST00000305768	human	ensembl	74_37	-1	known	missense	c.2198	p.R733Q	0.000	NULL	NULL	-	no_errors	CEP89	HGNC	ENSG00000121289				224	0	0	253	47	15.6667
KCTD15	0	genome.wustl.edu	37	19	34302406	34302406	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	34302406	34302406	G	A	SNP	KCTD15	ENST00000430256	human	ensembl	74_37	+1	known	silent	c.642	p.T214	0.996	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD15	HGNC	ENSG00000153885				66	0	0	57	8	12.3077
MAG	0	genome.wustl.edu	37	19	35791193	35791193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	35791193	35791193	G	A	SNP	MAG	ENST00000392213	human	ensembl	74_37	+1	known	missense	c.856	p.E286K	0.479	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MAG	HGNC	ENSG00000105695				33	0	0	23	10	30.303
ETV2	0	genome.wustl.edu	37	19	36134636	36134636	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	36134636	36134636	C	T	SNP	ETV2	ENST00000402764	human	ensembl	74_37	+1	known	silent	c.696	p.C232	0.941	NULL	pfam_Ets_dom,smart_Ets_dom,prints_Ets_dom,pfscan_Ets_dom	-	no_errors	ETV2	HGNC	ENSG00000105672				96	0	0	131	16	10.8844
ZNF585A	0	genome.wustl.edu	37	19	37644345	37644345	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	37644345	37644345	A	G	SNP	ZNF585A	ENST00000356958	human	ensembl	74_37	-1	known	silent	c.456	p.L152	0.968	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585A	HGNC	ENSG00000196967				104	0	0	181	31	14.6226
NFKBIB	0	genome.wustl.edu	37	19	39398282	39398282	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	39398282	39398282	G	A	SNP	NFKBIB	ENST00000313582	human	ensembl	74_37	+1	known	missense	c.952	p.D318N	0.984	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	NFKBIB	HGNC	ENSG00000104825				21	0	0	18	4	18.1818
EEF2	0	genome.wustl.edu	37	19	3977228	3977228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	3977228	3977228	C	T	SNP	EEF2	ENST00000309311	human	ensembl	74_37	-1	known	missense	c.2368	p.V790I	1.000	pfam_EFG_V,superfamily_EFG_III-V,smart_EFG_V	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658				34	0	0	39	8	17.0213
EEF2	0	genome.wustl.edu	37	19	3978014	3978014	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	3978014	3978014	C	T	SNP	EEF2	ENST00000309311	human	ensembl	74_37	-1	known	missense	c.1870	p.A624T	0.383	pfam_Transl_elong_EFG/EF2_IV,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658				45	0	0	27	8	22.8571
SAMD4B	0	genome.wustl.edu	37	19	39860427	39860427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	39860427	39860427	C	T	SNP	SAMD4B	ENST00000314471	human	ensembl	74_37	+1	known	missense	c.329	p.A110V	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4B	HGNC	ENSG00000179134				77	0	0	82	22	21.1538
SUPT5H	0	genome.wustl.edu	37	19	39961097	39961097	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	39961097	39961097	C	T	SNP	SUPT5H	ENST00000432763	human	ensembl	74_37	+1	known	silent	c.1611	p.G537	0.816	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N_dom,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235				235	0	0	241	42	14.841
FCGBP	0	genome.wustl.edu	37	19	40363285	40363285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	40363285	40363285	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.14785	p.V4929M	0.984	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				30	0	0	25	3	10.7143
SERTAD1	0	genome.wustl.edu	37	19	40929414	40929414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	40929414	40929414	C	T	SNP	SERTAD1	ENST00000357949	human	ensembl	74_37	-1	known	missense	c.40	p.E14K	1.000	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD1	HGNC	ENSG00000197019				103	0	0	117	7	5.64516
CYP2A6	0	genome.wustl.edu	37	19	41349733	41349733	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	41349733	41349733	G	A	SNP	CYP2A6	ENST00000301141	human	ensembl	74_37	-1	known	nonsense	c.1453	p.R485*	0.068	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A6	HGNC	ENSG00000255974				181	0	0	221	15	6.35593
CYP2A7	0	genome.wustl.edu	37	19	41381630	41381630	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	41381630	41381630	G	A	SNP	CYP2A7	ENST00000301146	human	ensembl	74_37	-1	known	nonsense	c.1453	p.R485*	0.473	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2B-like	-	no_errors	CYP2A7	HGNC	ENSG00000198077				60	0	0	51	4	7.27273
CEACAM3	0	genome.wustl.edu	37	19	42301697	42301697	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	42301697	42301697	G	T	SNP	CEACAM3	ENST00000357396	human	ensembl	74_37	+1	known	nonsense	c.241	p.G81*	0.000	pfam_Ig_V-set	pfam_Ig_V-set	-	no_errors	CEACAM3	HGNC	ENSG00000170956				246	0	0	288	59	17.0029
LIPE	0	genome.wustl.edu	37	19	42911534	42911534	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	42911534	42911534	C	T	SNP	LIPE	ENST00000244289	human	ensembl	74_37	-1	known	silent	c.1929	p.S643	0.001	pfam_Steryl_acetyl_hydrolase	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435				39	0	0	45	5	10
PLAUR	0	genome.wustl.edu	37	19	44174241	44174241	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	44174241	44174241	A	G	SNP	PLAUR	ENST00000340093	human	ensembl	74_37	-1	known	missense	c.32	p.L11P	0.130	NULL	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	PLAUR	HGNC	ENSG00000011422				170	0	0	148	34	18.6813
ZNF235	0	genome.wustl.edu	37	19	44791754	44791754	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	44791754	44791754	A	G	SNP	ZNF235	ENST00000291182	human	ensembl	74_37	-1	known	missense	c.1834	p.S612P	0.006	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917				192	0	0	258	47	15.4098
MARK4	0	genome.wustl.edu	37	19	45805809	45805809	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	45805809	45805809	C	T	SNP	MARK4	ENST00000262891	human	ensembl	74_37	+1	known	silent	c.2100	p.H700	1.000	superfamily_KA1/Ssp2_C	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	MARK4	HGNC	ENSG00000007047				65	0	0	42	7	14.2857
HIF3A	0	genome.wustl.edu	37	19	46832597	46832597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	46832597	46832597	G	A	SNP	HIF3A	ENST00000377670	human	ensembl	74_37	+1	known	missense	c.1574	p.R525Q	0.932	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440				61	0	0	74	18	19.5652
CCDC8	0	genome.wustl.edu	37	19	46915732	46915732	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	46915732	46915732	G	T	SNP	CCDC8	ENST00000307522	human	ensembl	74_37	-1	known	silent	c.336	p.T112	0.003	NULL	NULL	-	no_errors	CCDC8	HGNC	ENSG00000169515				156	0	0	173	28	13.9303
CARD8	0	genome.wustl.edu	37	19	48733886	48733886	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	48733886	48733886	C	G	SNP	CARD8	ENST00000391898	human	ensembl	74_37	-1	known	missense	c.844	p.A282P	0.055	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD8	HGNC	ENSG00000105483				259	0	0	215	56	20.6642
GRIN2D	0	genome.wustl.edu	37	19	48908191	48908191	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	48908191	48908191	G	A	SNP	GRIN2D	ENST00000263269	human	ensembl	74_37	+1	known	silent	c.666	p.T222	0.938	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464				134	1	0.740741	163	35	17.6768
LMTK3	0	genome.wustl.edu	37	19	49004776	49004776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	49004776	49004776	C	T	SNP	LMTK3	ENST00000270238	human	ensembl	74_37	-1	known	missense	c.925	p.V309M	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235				25	0	0	23	2	8
RASIP1	0	genome.wustl.edu	37	19	49238628	49238628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	49238628	49238628	C	T	SNP	RASIP1	ENST00000222145	human	ensembl	74_37	-1	known	missense	c.1004	p.R335Q	0.978	NULL	pfam_Dil_domain,pfam_Ras-assoc,superfamily_SMAD_FHA_domain,smart_Ras-assoc,pfscan_Dilute,pfscan_Ras-assoc	-	no_errors	RASIP1	HGNC	ENSG00000105538				37	0	0	32	8	20
SLC6A16	0	genome.wustl.edu	37	19	49793594	49793594	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	49793594	49793594	A	G	SNP	SLC6A16	ENST00000335875	human	ensembl	74_37	-1	known	missense	c.1997	p.L666P	0.005	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127				104	0	0	91	25	21.5517
IRF3	0	genome.wustl.edu	37	19	50166672	50166672	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	50166672	50166672	C	T	SNP	IRF3	ENST00000309877	human	ensembl	74_37	-1	known	missense	c.265	p.G89R	0.019	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456				71	0	0	79	16	16.8421
CPT1C	0	genome.wustl.edu	37	19	50195521	50195521	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	50195521	50195521	G	A	SNP	CPT1C	ENST00000323446	human	ensembl	74_37	+1	known	silent	c.12	p.A4	0.967	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169				65	0	0	93	18	16.2162
MYH14	0	genome.wustl.edu	37	19	50752310	50752310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	50752310	50752310	C	T	SNP	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	missense	c.1396	p.R466C	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357				26	0	0	32	7	17.9487
NR1H2	0	genome.wustl.edu	37	19	50882014	50882014	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	50882014	50882014	G	A	SNP	NR1H2	ENST00000253727	human	ensembl	74_37	+1	known	silent	c.708	p.Q236	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408				119	0	0	111	18	13.9535
FAM71E1	0	genome.wustl.edu	37	19	50979543	50979543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	50979543	50979543	G	A	SNP	FAM71E1	ENST00000600100	human	ensembl	74_37	-1	known	missense	c.103	p.H35Y	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71E1	HGNC	ENSG00000142530				74	0	0	53	13	19.697
LRRC4B	0	genome.wustl.edu	37	19	51021472	51021472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	51021472	51021472	C	T	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.1498	p.G500R	0.994	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				30	0	0	27	4	12.9032
KLK11	0	genome.wustl.edu	37	19	51527542	51527542	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	51527542	51527542	C	A	SNP	KLK11	ENST00000594768	human	ensembl	74_37	-1	known	missense	c.318	p.Q106H	0.999	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	KLK11	HGNC	ENSG00000167757				129	0	0	151	23	13.2184
ZNF480	0	genome.wustl.edu	37	19	52819102	52819102	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	52819102	52819102	A	G	SNP	ZNF480	ENST00000468240	human	ensembl	74_37	+1	known	missense	c.215	p.D72G	0.002	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464				38	0	0	79	12	13.1868
ZNF701	0	genome.wustl.edu	37	19	53085749	53085749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	53085749	53085749	C	T	SNP	ZNF701	ENST00000301093	human	ensembl	74_37	+1	known	missense	c.635	p.S212L	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562				180	0	0	240	47	16.3763
ZNF765	0	genome.wustl.edu	37	19	53912301	53912301	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	53912301	53912301	A	G	SNP	ZNF765	ENST00000396408	human	ensembl	74_37	+1	known	missense	c.1493	p.D498G	0.012	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF765	HGNC	ENSG00000196417				66	0	0	97	13	11.8182
LILRA2	0	genome.wustl.edu	37	19	55098813	55098813	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	55098813	55098813	A	G	SNP	LILRA2	ENST00000251377	human	ensembl	74_37	+1	known	nonstop	c.1452	p.*484W	0.001	NULL	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA2	HGNC	ENSG00000239998				56	0	0	57	14	19.7183
LILRA1	0	genome.wustl.edu	37	19	55107376	55107376	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	55107376	55107376	G	A	SNP	LILRA1	ENST00000251372	human	ensembl	74_37	+1	known	missense	c.934	p.D312N	0.000	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA1	HGNC	ENSG00000104974				84	0	0	85	10	10.5263
SYT5	0	genome.wustl.edu	37	19	55687229	55687229	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	55687229	55687229	G	C	SNP	SYT5	ENST00000354308	human	ensembl	74_37	-1	known	missense	c.388	p.L130V	0.860	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT5	HGNC	ENSG00000129990				175	0	0	150	38	20.2128
HSPBP1	0	genome.wustl.edu	37	19	55790814	55790814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	55790814	55790814	C	T	SNP	HSPBP1	ENST00000255631	human	ensembl	74_37	-1	known	missense	c.163	p.A55T	0.999	NULL	superfamily_ARM-type_fold	-	no_errors	HSPBP1	HGNC	ENSG00000133265				95	0	0	102	15	12.8205
SAFB2	0	genome.wustl.edu	37	19	5587293	5587293	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	5587293	5587293	A	G	SNP	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	silent	c.2823	p.P941	0.775	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				29	0	0	34	6	15
ENSG00000269275	0	genome.wustl.edu	37	19	55889305	55889305	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	55889305	55889305	C	T	SNP	ENSG00000269275	ENST00000595064	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTD-2105E13.15	Clone_based_vega_gene	ENSG00000269275				54	0	0	67	10	12.987
ZNF835	0	genome.wustl.edu	37	19	57175267	57175267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	57175267	57175267	C	T	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	missense	c.1300	p.A434T	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				115	0	0	86	16	15.6863
PEG3	0	genome.wustl.edu	37	19	57335816	57335816	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	57335816	57335816	G	T	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.208	p.L70I	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				140	0	0	135	26	16.1491
ZNF805	0	genome.wustl.edu	37	19	57765984	57765984	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	57765984	57765984	T	C	SNP	ZNF805	ENST00000414468	human	ensembl	74_37	+1	known	silent	c.1797	p.T599	0.529	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524				44	0	0	52	9	14.7541
CATSPERD	0	genome.wustl.edu	37	19	5778543	5778543	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	5778543	5778543	C	T	SNP	CATSPERD	ENST00000381624	human	ensembl	74_37	+1	known	silent	c.2253	p.R751	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	CATSPERD	HGNC	ENSG00000174898				101	0	0	96	31	24.4094
ZNF211	0	genome.wustl.edu	37	19	58153457	58153457	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	58153457	58153457	A	G	SNP	ZNF211	ENST00000240731	human	ensembl	74_37	+1	known	missense	c.1642	p.R548G	0.005	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF211	HGNC	ENSG00000121417				157	0	0	190	47	19.8312
ZNF586	0	genome.wustl.edu	37	19	58288015	58288015	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	58288015	58288015	C	T	SNP	ZNF586	ENST00000396154	human	ensembl	74_37	+1	known	silent	c.141	p.T47	0.142	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF586	HGNC	ENSG00000083828				302	0	0	354	63	15.1079
ZNF606	0	genome.wustl.edu	37	19	58490178	58490178	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	58490178	58490178	A	T	SNP	ZNF606	ENST00000341164	human	ensembl	74_37	-1	known	missense	c.1870	p.Y624N	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704				89	0	0	132	22	14.2857
ZNF329	0	genome.wustl.edu	37	19	58640644	58640644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	58640644	58640644	C	T	SNP	ZNF329	ENST00000358067	human	ensembl	74_37	-1	known	missense	c.227	p.S76N	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF329	HGNC	ENSG00000181894				125	1	0.793651	132	20	13.1579
RPS5	0	genome.wustl.edu	37	19	58904820	58904820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	58904820	58904820	C	T	SNP	RPS5	ENST00000196551	human	ensembl	74_37	+1	known	missense	c.413	p.A138V	1.000	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	-	no_errors	RPS5	HGNC	ENSG00000083845				102	0	0	130	19	12.7517
C3	0	genome.wustl.edu	37	19	6712378	6712378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	6712378	6712378	C	T	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.1159	p.V387I	0.002	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				79	0	0	61	12	16.4384
C3	0	genome.wustl.edu	37	19	6719344	6719344	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	6719344	6719344	C	T	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.145	p.A49T	0.000	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				163	0	0	168	24	12.5
INSR	0	genome.wustl.edu	37	19	7117116	7117116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	7117116	7117116	C	T	SNP	INSR	ENST00000302850	human	ensembl	74_37	-1	known	missense	c.4100	p.G1367D	1.000	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105				196	0	0	221	42	15.9696
R3HDM4	0	genome.wustl.edu	37	19	899642	899642	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	899642	899642	G	A	SNP	R3HDM4	ENST00000361574	human	ensembl	74_37	-1	known	silent	c.606	p.S202	0.960	pfscan_R3H_ss-bd	pfscan_R3H_ss-bd	-	no_errors	R3HDM4	HGNC	ENSG00000198858				30	0	0	30	10	25
KISS1R	0	genome.wustl.edu	37	19	920352	920352	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	920352	920352	C	T	SNP	KISS1R	ENST00000606939	human	ensembl	74_37	+1	novel	missense	c.568	p.R190C	0.445	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_KiSS_1_rcpt,prints_GPCR_Rhodpsn,prints_Galanin_rcpt	-	no_errors	KISS1R	HGNC	ENSG00000116014				17	0	0	11	6	35.2941
ZNF177	0	genome.wustl.edu	37	19	9489757	9489757	+	Silent	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	9489757	9489757	C	A	SNP	ZNF177	ENST00000434737	human	ensembl	74_37	+1	known	silent	c.153	p.A51	0.049	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF177	HGNC	ENSG00000188629				63	0	0	77	20	20.6186
ZNF266	0	genome.wustl.edu	37	19	9529198	9529198	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	9529198	9529198	T	G	SNP	ZNF266	ENST00000361151	human	ensembl	74_37	-1	known	missense	c.17	p.K6T	0.623	superfamily_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF266	HGNC	ENSG00000174652				107	0	0	145	29	16.6667
PIN1	0	genome.wustl.edu	37	19	9958825	9958825	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	9958825	9958825	G	T	SNP	PIN1	ENST00000587625	human	ensembl	74_37	+1	putative	nonsense	c.391	p.G131*	0.003	NULL	pfam_WW_dom,pfam_PPIase_PpiC,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom,pfscan_PPIase_PpiC	-	no_errors	PIN1	HGNC	ENSG00000127445				49	0	0	31	12	27.907
FHL2	0	genome.wustl.edu	37	2	105979823	105979823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	105979823	105979823	G	A	SNP	FHL2	ENST00000322142	human	ensembl	74_37	-1	known	missense	c.607	p.R203C	0.998	pfam_Znf_LIM,smart_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL2	HGNC	ENSG00000115641				27	0	0	46	6	11.5385
SH3RF3	0	genome.wustl.edu	37	2	110015388	110015388	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	110015388	110015388	G	T	SNP	SH3RF3	ENST00000309415	human	ensembl	74_37	+1	known	missense	c.1288	p.A430S	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,prints_p67phox,pfscan_SH3_domain,pfscan_Znf_RING	-	no_errors	SH3RF3	HGNC	ENSG00000172985				26	0	0	32	5	13.5135
KCNF1	0	genome.wustl.edu	37	2	11052611	11052611	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	11052611	11052611	G	A	SNP	KCNF1	ENST00000295082	human	ensembl	74_37	+1	known	missense	c.59	p.S20N	0.985	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975				16	0	0	16	4	20
KCNF1	0	genome.wustl.edu	37	2	11053197	11053197	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	11053197	11053197	C	T	SNP	KCNF1	ENST00000295082	human	ensembl	74_37	+1	known	silent	c.645	p.N215	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975				65	0	0	66	16	19.5122
ANAPC1	0	genome.wustl.edu	37	2	112601104	112601104	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	112601104	112601104	T	C	SNP	ANAPC1	ENST00000341068	human	ensembl	74_37	-1	known	missense	c.1925	p.Y642C	1.000	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107				25	0	0	54	3	5.26316
ANAPC1	0	genome.wustl.edu	37	2	112621367	112621367	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	112621367	112621367	A	G	SNP	ANAPC1	ENST00000341068	human	ensembl	74_37	-1	known	missense	c.937	p.S313P	0.951	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107				58	0	0	95	19	16.6667
IL36RN	0	genome.wustl.edu	37	2	113820192	113820192	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	113820192	113820192	C	A	SNP	IL36RN	ENST00000346807	human	ensembl	74_37	+1	known	missense	c.406	p.L136I	0.121	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1RA/IL-36,prints_IL-1,prints_IL-1_alpha/beta	-	no_errors	IL36RN	HGNC	ENSG00000136695				70	0	0	75	19	20.2128
CNTNAP5	0	genome.wustl.edu	37	2	125192241	125192241	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	125192241	125192241	G	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.710	p.R237M	0.994	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				29	0	0	28	6	17.6471
MYO7B	0	genome.wustl.edu	37	2	128345990	128345990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	128345990	128345990	G	A	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	missense	c.1714	p.V572M	0.120	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994				43	0	0	38	13	25.4902
NCKAP5	0	genome.wustl.edu	37	2	133540748	133540748	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	133540748	133540748	A	T	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.3636	p.D1212E	0.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				86	0	0	78	21	21.2121
MAP3K19	0	genome.wustl.edu	37	2	135738531	135738531	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	135738531	135738531	C	A	SNP	MAP3K19	ENST00000375845	human	ensembl	74_37	-1	known	missense	c.3780	p.M1260I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K19	HGNC	ENSG00000176601				75	0	0	88	9	9.27835
DARS	0	genome.wustl.edu	37	2	136719000	136719000	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	136719000	136719000	G	T	SNP	DARS	ENST00000264161	human	ensembl	74_37	-1	known	missense	c.286	p.H96N	1.000	pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,tigrfam_Asp-tRNA_synthase	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asp-tRNA_synthase	-	no_errors	DARS	HGNC	ENSG00000115866				38	0	0	65	17	20.7317
ZEB2	0	genome.wustl.edu	37	2	145156721	145156721	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	145156721	145156721	G	A	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.2033	p.S678F	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				130	0	0	156	41	20.8122
RBM43	0	genome.wustl.edu	37	2	152107949	152107949	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	152107949	152107949	C	T	SNP	RBM43	ENST00000331426	human	ensembl	74_37	-1	known	missense	c.545	p.S182N	0.000	NULL	pfscan_RRM_dom	-	no_errors	RBM43	HGNC	ENSG00000184898				126	0	0	153	31	16.8478
MYCN	0	genome.wustl.edu	37	2	16085828	16085828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	16085828	16085828	C	T	SNP	MYCN	ENST00000281043	human	ensembl	74_37	+1	known	missense	c.1004	p.P335L	1.000	pfam_Tscrpt_reg_Myc_N,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYCN	HGNC	ENSG00000134323				70	0	0	42	17	28.8136
FIGN	0	genome.wustl.edu	37	2	164467312	164467312	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	164467312	164467312	T	C	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	missense	c.1030	p.T344A	0.999	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263				121	0	0	168	22	11.5789
PXDN	0	genome.wustl.edu	37	2	1652323	1652323	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	1652323	1652323	C	A	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.3229	p.V1077F	0.517	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				48	0	0	49	7	12.5
SCN2A	0	genome.wustl.edu	37	2	166164371	166164371	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	166164371	166164371	C	G	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.400	p.L134V	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				165	0	0	247	38	13.3333
CSRNP3	0	genome.wustl.edu	37	2	166535566	166535566	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	166535566	166535566	G	A	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	missense	c.1061	p.S354N	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				124	0	0	161	37	18.6869
LRP2	0	genome.wustl.edu	37	2	170034507	170034507	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	170034507	170034507	T	C	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.10199	p.H3400R	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				61	0	0	56	15	21.1268
KLHL23	0	genome.wustl.edu	37	2	170592513	170592513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	170592513	170592513	C	T	SNP	KLHL23	ENST00000272797	human	ensembl	74_37	+1	known	missense	c.989	p.T330M	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL23	HGNC	ENSG00000213160				183	0	0	258	51	16.5049
HAT1	0	genome.wustl.edu	37	2	172841220	172841220	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	172841220	172841220	G	T	SNP	HAT1	ENST00000264108	human	ensembl	74_37	+1	known	missense	c.948	p.E316D	0.982	superfamily_Acyl_CoA_acyltransferase,pirsf_Hist_AcTrfase_B-typ_cat-su	pfam_Hat1_N,superfamily_Acyl_CoA_acyltransferase,pirsf_Hist_AcTrfase_B-typ_cat-su	-	no_errors	HAT1	HGNC	ENSG00000128708				37	0	0	53	9	14.5161
ITGA6	0	genome.wustl.edu	37	2	173337581	173337581	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	173337581	173337581	T	C	SNP	ITGA6	ENST00000264106	human	ensembl	74_37	+1	known	silent	c.855	p.P285	0.891	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409				128	0	0	166	24	12.6316
RBM45	0	genome.wustl.edu	37	2	178977345	178977345	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	178977345	178977345	C	T	SNP	RBM45	ENST00000286070	human	ensembl	74_37	+1	known	silent	c.72	p.P24	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM45	HGNC	ENSG00000155636				70	0	0	85	26	23.4234
TTN	0	genome.wustl.edu	37	2	179400220	179400220	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	179400220	179400220	A	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.93418	p.L31140V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				62	0	0	85	17	16.6667
TTN	0	genome.wustl.edu	37	2	179437337	179437337	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	179437337	179437337	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.65818	p.K21940E	1.000	pfam_Ig_I-set,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				85	0	0	103	29	21.9697
TTN	0	genome.wustl.edu	37	2	179446674	179446674	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	179446674	179446674	G	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.58718	p.P19573R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				77	0	0	95	19	16.6667
TTN	0	genome.wustl.edu	37	2	179454780	179454780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	179454780	179454780	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.53968	p.A17990T	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				59	0	0	69	17	19.7674
TTN	0	genome.wustl.edu	37	2	179498051	179498051	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	179498051	179498051	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	nonsense	c.35245	p.R11749*	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				107	0	0	151	28	15.6425
SSFA2	0	genome.wustl.edu	37	2	182784165	182784165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	182784165	182784165	G	A	SNP	SSFA2	ENST00000431877	human	ensembl	74_37	+1	known	missense	c.3136	p.A1046T	0.003	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434				140	0	0	193	39	16.8103
STRADB	0	genome.wustl.edu	37	2	202342485	202342485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	202342485	202342485	C	T	SNP	STRADB	ENST00000194530	human	ensembl	74_37	+1	known	missense	c.692	p.P231L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STRADB	HGNC	ENSG00000082146				159	0	0	174	39	18.3099
PARD3B	0	genome.wustl.edu	37	2	206110504	206110504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	206110504	206110504	C	T	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	missense	c.2143	p.P715S	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				49	0	0	103	21	16.9355
CPS1	0	genome.wustl.edu	37	2	211473216	211473216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	211473216	211473216	G	A	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.2342	p.R781H	1.000	tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				109	0	0	136	18	11.6883
APOB	0	genome.wustl.edu	37	2	21238054	21238054	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	21238054	21238054	T	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.3587	p.D1196A	0.994	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				99	0	0	112	29	20.5674
ERBB4	0	genome.wustl.edu	37	2	212426794	212426794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	212426794	212426794	C	T	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.2321	p.S774N	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				99	0	0	89	11	11
ABCA12	0	genome.wustl.edu	37	2	215835098	215835098	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	215835098	215835098	T	C	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	silent	c.5589	p.P1863	0.997	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				57	0	0	82	13	13.6842
TNS1	0	genome.wustl.edu	37	2	218757703	218757703	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	218757703	218757703	C	T	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	silent	c.375	p.A125	0.054	smart_Tyr_Pase_cat,pfscan_Phosphatase_tensin-typ	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				75	0	0	73	9	10.9756
ARPC2	0	genome.wustl.edu	37	2	219099093	219099093	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	219099093	219099093	G	T	SNP	ARPC2	ENST00000295685	human	ensembl	74_37	+1	known	missense	c.241	p.G81W	1.000	pfam_P34-arc	pfam_P34-arc	-	no_errors	ARPC2	HGNC	ENSG00000163466				79	0	0	132	21	13.7255
IHH	0	genome.wustl.edu	37	2	219920565	219920565	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	219920565	219920565	C	T	SNP	IHH	ENST00000295731	human	ensembl	74_37	-1	known	silent	c.600	p.T200	0.118	pirsf_Hedgehog,pfam_Hint_dom,prints_Hedgehog	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,prints_Hedgehog,pfscan_Intein_splice_site	-	no_errors	IHH	HGNC	ENSG00000163501				44	0	0	28	11	28.2051
TUBA4B	0	genome.wustl.edu	37	2	220136510	220136510	+	RNA	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	220136510	220136510	T	C	SNP	TUBA4B	ENST00000473885	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	TUBA4B	HGNC	ENSG00000243910				116	0	0	109	22	16.7939
SPEG	0	genome.wustl.edu	37	2	220329302	220329302	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	220329302	220329302	G	A	SNP	SPEG	ENST00000396695	human	ensembl	74_37	+1	known	silent	c.477	p.R159	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				84	0	0	80	9	10.1124
SPEG	0	genome.wustl.edu	37	2	220342493	220342493	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	220342493	220342493	C	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.4812	p.H1604Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				66	0	0	73	13	15.1163
INHA	0	genome.wustl.edu	37	2	220439918	220439918	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	220439918	220439918	T	C	SNP	INHA	ENST00000243786	human	ensembl	74_37	+1	known	silent	c.771	p.A257	0.000	pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999				85	0	0	96	25	20.6612
IRS1	0	genome.wustl.edu	37	2	227662289	227662289	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	227662289	227662289	G	A	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	missense	c.1166	p.P389L	1.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				142	0	0	103	27	20.7692
PSMD1	0	genome.wustl.edu	37	2	232011035	232011035	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	232011035	232011035	A	G	SNP	PSMD1	ENST00000308696	human	ensembl	74_37	+1	known	missense	c.2080	p.I694V	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692				93	0	0	146	28	16.092
NMUR1	0	genome.wustl.edu	37	2	232390057	232390057	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	232390057	232390057	C	A	SNP	NMUR1	ENST00000305141	human	ensembl	74_37	-1	known	missense	c.978	p.W326C	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NeuromedU_rcpt_1,prints_NeuromedU_rcpt,prints_GPCR_Rhodpsn	-	no_errors	NMUR1	HGNC	ENSG00000171596				107	1	0.925926	83	21	20.1923
ALPI	0	genome.wustl.edu	37	2	233321171	233321171	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	233321171	233321171	C	T	SNP	ALPI	ENST00000295463	human	ensembl	74_37	+1	known	silent	c.180	p.G60	0.002	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPI	HGNC	ENSG00000163295				121	0	0	122	23	15.8621
GIGYF2	0	genome.wustl.edu	37	2	233626135	233626135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	233626135	233626135	G	A	SNP	GIGYF2	ENST00000373566	human	ensembl	74_37	+1	known	missense	c.521	p.R174Q	1.000	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120				37	0	0	53	18	25.3521
AGAP1	0	genome.wustl.edu	37	2	237028961	237028961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	237028961	237028961	C	T	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.2240	p.T747M	0.319	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				143	0	0	107	23	17.6923
ASB1	0	genome.wustl.edu	37	2	239344627	239344627	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	239344627	239344627	G	A	SNP	ASB1	ENST00000264607	human	ensembl	74_37	+1	known	missense	c.467	p.R156Q	0.978	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB1	HGNC	ENSG00000065802				52	0	0	34	6	15
HDLBP	0	genome.wustl.edu	37	2	242179357	242179357	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	242179357	242179357	G	A	SNP	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	nonsense	c.2350	p.R784*	0.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				99	0	0	118	13	9.92366
NCOA1	0	genome.wustl.edu	37	2	24962359	24962359	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	24962359	24962359	G	A	SNP	NCOA1	ENST00000348332	human	ensembl	74_37	+1	known	missense	c.3260	p.G1087D	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA1	HGNC	ENSG00000084676				79	0	0	105	17	13.9344
OTOF	0	genome.wustl.edu	37	2	26696374	26696374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	26696374	26696374	C	T	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	missense	c.3470	p.R1157Q	1.000	pfam_C2_dom,superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				98	0	0	108	18	14.2857
CAPN13	0	genome.wustl.edu	37	2	30998797	30998797	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	30998797	30998797	C	T	SNP	CAPN13	ENST00000295055	human	ensembl	74_37	-1	known	missense	c.386	p.R129Q	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN13	HGNC	ENSG00000162949				66	0	0	60	16	21.0526
BIRC6	0	genome.wustl.edu	37	2	32688342	32688342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	32688342	32688342	G	A	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.4834	p.A1612T	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				35	0	0	36	11	23.4043
GALM	0	genome.wustl.edu	37	2	38908522	38908522	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	38908522	38908522	C	T	SNP	GALM	ENST00000272252	human	ensembl	74_37	+1	known	missense	c.446	p.T149I	0.999	pfam_Aldose_1/G6P_1-epimerase,superfamily_Gal_mutarotase_SF_dom	pfam_Aldose_1/G6P_1-epimerase,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GALM	HGNC	ENSG00000143891				179	0	0	211	39	15.6
PRKCE	0	genome.wustl.edu	37	2	46234667	46234667	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	46234667	46234667	G	T	SNP	PRKCE	ENST00000306156	human	ensembl	74_37	+1	known	missense	c.1130	p.R377L	1.000	pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132				80	0	0	112	18	13.8462
FOXN2	0	genome.wustl.edu	37	2	48602420	48602420	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	48602420	48602420	A	G	SNP	FOXN2	ENST00000340553	human	ensembl	74_37	+1	known	silent	c.1134	p.K378	0.152	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN2	HGNC	ENSG00000170802				55	0	0	62	12	16.2162
FSHR	0	genome.wustl.edu	37	2	49210274	49210274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	49210274	49210274	G	A	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.556	p.H186Y	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				30	0	0	53	10	15.873
SPTBN1	0	genome.wustl.edu	37	2	54856337	54856337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	54856337	54856337	G	A	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	missense	c.2066	p.G689D	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				105	0	0	100	27	21.2598
SPTBN1	0	genome.wustl.edu	37	2	54895586	54895586	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	54895586	54895586	C	T	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	silent	c.6975	p.R2325	0.780	pirsf_Spectrin_bsu	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				92	0	0	122	15	10.9489
BCL11A	0	genome.wustl.edu	37	2	60688902	60688902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	60688902	60688902	C	T	SNP	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	missense	c.1145	p.C382Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				187	0	0	165	27	14.0625
CEP68	0	genome.wustl.edu	37	2	65305048	65305048	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	65305048	65305048	T	C	SNP	CEP68	ENST00000377990	human	ensembl	74_37	+1	known	missense	c.2054	p.V685A	0.992	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523				67	0	0	61	14	18.6667
ARHGAP25	0	genome.wustl.edu	37	2	69034514	69034514	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	69034514	69034514	C	A	SNP	ARHGAP25	ENST00000488795	human	ensembl	74_37	+1	known	missense	c.371	p.A124D	0.853	pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ARHGAP25	HGNC	ENSG00000163219				94	0	0	93	16	14.6789
AAK1	0	genome.wustl.edu	37	2	69748102	69748102	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	69748102	69748102	G	A	SNP	AAK1	ENST00000409085	human	ensembl	74_37	-1	known	silent	c.1074	p.P358	0.927	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AAK1	HGNC	ENSG00000115977				85	0	0	95	23	19.4915
ADD2	0	genome.wustl.edu	37	2	70922922	70922922	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	70922922	70922922	G	A	SNP	ADD2	ENST00000264436	human	ensembl	74_37	-1	known	silent	c.486	p.S162	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340				38	0	0	46	15	24.5902
DYSF	0	genome.wustl.edu	37	2	71708055	71708055	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	71708055	71708055	C	A	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.131	p.P44H	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				38	0	0	59	11	15.7143
SLC4A5	0	genome.wustl.edu	37	2	74513011	74513011	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	74513011	74513011	T	G	SNP	SLC4A5	ENST00000357822	human	ensembl	74_37	-1	known	missense	c.290	p.Q97P	1.000	NULL	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687				25	0	0	18	3	14.2857
HK2	0	genome.wustl.edu	37	2	75116469	75116469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	75116469	75116469	G	A	SNP	HK2	ENST00000290573	human	ensembl	74_37	+1	known	missense	c.2473	p.V825M	0.996	pfam_Hexokinase_C,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399				71	0	0	64	12	15.7895
REG1P	0	genome.wustl.edu	37	2	79365218	79365218	+	RNA	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	79365218	79365218	G	T	SNP	REG1P	ENST00000414597	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	REG1P	HGNC	ENSG00000204787				14	0	0	21	4	16
REG3A	0	genome.wustl.edu	37	2	79386462	79386462	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	79386462	79386462	C	A	SNP	REG3A	ENST00000305165	human	ensembl	74_37	-1	known	missense	c.70	p.V24F	0.059	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	REG3A	HGNC	ENSG00000172016				95	0	0	97	17	14.9123
SNRNP200	0	genome.wustl.edu	37	2	96950779	96950779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	96950779	96950779	C	T	SNP	SNRNP200	ENST00000349783	human	ensembl	74_37	-1	known	missense	c.1673	p.R558H	0.001	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Sec63-dom,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase	-	no_errors	SNRNP200	HGNC	ENSG00000144028				8	0	0	9	3	25
FAHD2B	0	genome.wustl.edu	37	2	97751467	97751467	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	97751467	97751467	G	A	SNP	FAHD2B	ENST00000272610	human	ensembl	74_37	-1	known	silent	c.654	p.G218	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2B	HGNC	ENSG00000144199				75	0	0	100	21	17.3554
ANKEF1	0	genome.wustl.edu	37	20	10026338	10026338	+	Silent	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	10026338	10026338	T	G	SNP	ANKEF1	ENST00000378380	human	ensembl	74_37	+1	known	silent	c.813	p.A271	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_hand_dom,prints_Ankyrin_rpt	-	no_errors	ANKEF1	HGNC	ENSG00000132623				35	0	0	57	14	19.7183
ANKEF1	0	genome.wustl.edu	37	20	10036204	10036204	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	10036204	10036204	C	T	SNP	ANKEF1	ENST00000378380	human	ensembl	74_37	+1	known	nonsense	c.2227	p.R743*	0.900	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_hand_dom,prints_Ankyrin_rpt	-	no_errors	ANKEF1	HGNC	ENSG00000132623				73	0	0	64	11	14.6667
SLC24A3	0	genome.wustl.edu	37	20	19701764	19701764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	19701764	19701764	C	T	SNP	SLC24A3	ENST00000328041	human	ensembl	74_37	+1	known	missense	c.1915	p.P639S	1.000	NULL	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A3	HGNC	ENSG00000185052				112	0	0	132	26	16.4557
RIN2	0	genome.wustl.edu	37	20	19972890	19972890	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	19972890	19972890	C	T	SNP	RIN2	ENST00000255006	human	ensembl	74_37	+1	known	missense	c.2294	p.T765I	0.960	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	pfam_VPS9,pfam_Ras-assoc,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN2	HGNC	ENSG00000132669				11	0	0	25	5	16.6667
INSM1	0	genome.wustl.edu	37	20	20349795	20349795	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	20349795	20349795	A	G	SNP	INSM1	ENST00000310227	human	ensembl	74_37	+1	known	missense	c.884	p.Y295C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	INSM1	HGNC	ENSG00000173404				35	0	0	32	6	15.7895
NKX2-2	0	genome.wustl.edu	37	20	21493107	21493107	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	21493107	21493107	G	A	SNP	NKX2-2	ENST00000377142	human	ensembl	74_37	-1	known	silent	c.276	p.A92	0.351	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-2	HGNC	ENSG00000125820				13	0	0	13	6	31.5789
PYGB	0	genome.wustl.edu	37	20	25257947	25257947	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	25257947	25257947	G	A	SNP	PYGB	ENST00000216962	human	ensembl	74_37	+1	known	silent	c.840	p.L280	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994				69	0	0	86	17	16.5049
NINL	0	genome.wustl.edu	37	20	25456869	25456869	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	25456869	25456869	C	A	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.3058	p.G1020W	0.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				110	0	0	142	34	19.3182
NINL	0	genome.wustl.edu	37	20	25457248	25457248	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	25457248	25457248	G	A	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	silent	c.2679	p.P893	0.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				25	0	0	21	4	16
C20orf96	0	genome.wustl.edu	37	20	259839	259839	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	259839	259839	G	T	SNP	C20orf96	ENST00000360321	human	ensembl	74_37	-1	known	missense	c.439	p.L147M	0.005	NULL	NULL	-	no_errors	C20orf96	HGNC	ENSG00000196476				40	0	0	42	11	20.7547
REM1	0	genome.wustl.edu	37	20	30064348	30064348	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	30064348	30064348	A	C	SNP	REM1	ENST00000201979	human	ensembl	74_37	+1	known	missense	c.100	p.S34R	0.882	pirsf_Small_GTPase_GEM/REM/Rad	pirsf_Small_GTPase_GEM/REM/Rad,pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	REM1	HGNC	ENSG00000088320				141	0	0	152	34	18.2796
ASXL1	0	genome.wustl.edu	37	20	31023219	31023219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	31023219	31023219	C	T	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	missense	c.2704	p.P902S	0.001	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				103	0	0	143	29	16.8605
C20orf112	0	genome.wustl.edu	37	20	31040055	31040055	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	31040055	31040055	T	C	SNP	C20orf112	ENST00000359676	human	ensembl	74_37	-1	known	silent	c.1074	p.T358	1.000	NULL	NULL	-	no_errors	C20orf112	HGNC	ENSG00000197183				65	0	0	64	16	20
COMMD7	0	genome.wustl.edu	37	20	31315724	31315724	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	31315724	31315724	T	A	SNP	COMMD7	ENST00000278980	human	ensembl	74_37	-1	known	nonsense	c.217	p.K73*	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD7	HGNC	ENSG00000149600				99	0	0	98	23	19.0083
DNMT3B	0	genome.wustl.edu	37	20	31389173	31389173	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	31389173	31389173	T	C	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	missense	c.2086	p.F696L	1.000	pfam_C5_MeTfrase	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				74	0	0	77	28	26.6667
C20orf194	0	genome.wustl.edu	37	20	3299036	3299036	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	3299036	3299036	G	A	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	silent	c.1368	p.A456	0.000	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				70	0	0	120	25	17.2414
TGM2	0	genome.wustl.edu	37	20	36779433	36779433	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	36779433	36779433	C	A	SNP	TGM2	ENST00000361475	human	ensembl	74_37	-1	known	nonsense	c.460	p.E154*	0.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959				162	0	0	173	37	17.619
TGM2	0	genome.wustl.edu	37	20	36779450	36779450	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	36779450	36779450	A	C	SNP	TGM2	ENST00000361475	human	ensembl	74_37	-1	known	missense	c.443	p.V148G	0.965	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959				158	0	0	154	36	18.9474
HSPA12B	0	genome.wustl.edu	37	20	3732766	3732766	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	3732766	3732766	A	G	SNP	HSPA12B	ENST00000254963	human	ensembl	74_37	+1	known	missense	c.2014	p.S672G	1.000	NULL	NULL	-	no_errors	HSPA12B	HGNC	ENSG00000132622				37	0	0	41	6	12.766
CENPB	0	genome.wustl.edu	37	20	3766572	3766572	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	3766572	3766572	C	T	SNP	CENPB	ENST00000379751	human	ensembl	74_37	-1	known	missense	c.559	p.A187T	0.968	pfam_DDE_SF_endonuclease_CENPB-like	pfam_Centromere_CenpB_dimerisation,pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_Psq,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	CENPB	HGNC	ENSG00000125817				80	0	0	69	10	12.6582
ZSWIM3	0	genome.wustl.edu	37	20	44505691	44505691	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	44505691	44505691	G	A	SNP	ZSWIM3	ENST00000255152	human	ensembl	74_37	+1	known	missense	c.494	p.G165D	0.004	NULL	pfam_Znf_SWIM,pfam_MULE_transposase_dom,pfam_Transposase,smart_Znf_PMZ,pfscan_Znf_SWIM	-	no_errors	ZSWIM3	HGNC	ENSG00000132801				109	0	0	95	20	17.3913
SPATA2	0	genome.wustl.edu	37	20	48524813	48524813	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	48524813	48524813	C	T	SNP	SPATA2	ENST00000289431	human	ensembl	74_37	-1	known	missense	c.215	p.S72N	1.000	NULL	NULL	-	no_errors	SPATA2	HGNC	ENSG00000158480				126	0	0	140	33	19.0751
PROKR2	0	genome.wustl.edu	37	20	5283318	5283318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	5283318	5283318	C	T	SNP	PROKR2	ENST00000217270	human	ensembl	74_37	-1	known	missense	c.523	p.A175T	0.245	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR2	HGNC	ENSG00000101292				217	0	0	228	22	8.8
GPCPD1	0	genome.wustl.edu	37	20	5564949	5564949	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	5564949	5564949	G	A	SNP	GPCPD1	ENST00000379019	human	ensembl	74_37	-1	known	silent	c.327	p.D109	0.906	superfamily_Carb-bd-like_fold,pfscan_CBM_fam20	pfam_GlyceroP-diester-Pdiesterase,pfam_CBM_fam20,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Carb-bd-like_fold,pfscan_CBM_fam20	-	no_errors	GPCPD1	HGNC	ENSG00000125772				54	0	0	75	16	17.5824
ZNF831	0	genome.wustl.edu	37	20	57769284	57769284	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	57769284	57769284	T	C	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	silent	c.3210	p.G1070	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				44	0	0	53	8	13.1148
PSMA7	0	genome.wustl.edu	37	20	60714763	60714763	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	60714763	60714763	T	A	SNP	PSMA7	ENST00000370858	human	ensembl	74_37	-1	known	missense	c.422	p.H141L	0.000	NULL	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA7	HGNC	ENSG00000101182				43	0	0	41	9	18
DIDO1	0	genome.wustl.edu	37	20	61512442	61512442	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	61512442	61512442	G	A	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	silent	c.4866	p.G1622	0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				35	0	0	36	8	18.1818
KCNQ2	0	genome.wustl.edu	37	20	62076690	62076690	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	62076690	62076690	C	T	SNP	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	missense	c.415	p.V139M	0.998	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043				124	0	0	115	18	13.5338
UCKL1	0	genome.wustl.edu	37	20	62576024	62576024	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	62576024	62576024	G	A	SNP	UCKL1	ENST00000354216	human	ensembl	74_37	-1	known	missense	c.718	p.R240W	0.186	pfam_PRK/URK,superfamily_P-loop_NTPase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_CPT,superfamily_P-loop_NTPase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC	ENSG00000198276				50	0	0	42	7	14.2857
MYT1	0	genome.wustl.edu	37	20	62837074	62837074	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	62837074	62837074	T	C	SNP	MYT1	ENST00000536311	human	ensembl	74_37	+1	known	silent	c.318	p.D106	0.935	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132				66	0	0	40	10	20
NRIP1	0	genome.wustl.edu	37	21	16338052	16338052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	16338052	16338052	C	T	SNP	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	missense	c.2462	p.R821Q	0.997	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				62	0	0	103	14	11.9658
LINC00478	0	genome.wustl.edu	37	21	17443679	17443679	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	17443679	17443679	G	A	SNP	LINC00478	ENST00000400178	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00478	HGNC	ENSG00000215386				46	0	0	63	13	17.1053
MRPL39	0	genome.wustl.edu	37	21	26979747	26979747	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	26979747	26979747	C	T	SNP	MRPL39	ENST00000307301	human	ensembl	74_37	-1	known	nonsense	c.41	p.W14*	0.001	NULL	superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_TGS-like	-	no_errors	MRPL39	HGNC	ENSG00000154719				75	0	0	90	15	14.2857
BACH1	0	genome.wustl.edu	37	21	30714967	30714967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	30714967	30714967	G	A	SNP	BACH1	ENST00000286800	human	ensembl	74_37	+1	known	missense	c.2024	p.R675Q	0.335	NULL	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH1	HGNC	ENSG00000156273				102	0	0	100	21	17.3554
KRTAP26-1	0	genome.wustl.edu	37	21	31691902	31691902	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	31691902	31691902	T	G	SNP	KRTAP26-1	ENST00000360542	human	ensembl	74_37	-1	known	missense	c.452	p.K151T	0.000	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP26-1	HGNC	ENSG00000197683				359	0	0	373	63	14.4495
HUNK	0	genome.wustl.edu	37	21	33318443	33318443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	33318443	33318443	G	A	SNP	HUNK	ENST00000270112	human	ensembl	74_37	+1	known	missense	c.706	p.A236T	0.997	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HUNK	HGNC	ENSG00000142149				72	0	0	91	13	12.5
IFNAR1	0	genome.wustl.edu	37	21	34721569	34721569	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	34721569	34721569	G	T	SNP	IFNAR1	ENST00000270139	human	ensembl	74_37	+1	known	nonsense	c.961	p.E321*	0.991	superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	-	no_errors	IFNAR1	HGNC	ENSG00000142166				63	0	0	123	24	16.3265
SON	0	genome.wustl.edu	37	21	34948684	34948684	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	34948684	34948684	G	A	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	missense	c.7235	p.G2412E	1.000	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				23	0	0	59	8	11.9403
HLCS	0	genome.wustl.edu	37	21	38308845	38308845	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	38308845	38308845	G	T	SNP	HLCS	ENST00000336648	human	ensembl	74_37	-1	known	silent	c.900	p.P300	0.000	NULL	pfam_BPL_LipA_LipB,pfam_BPL_C,tigrfam_Biotin_CoA_COase_ligase	-	no_errors	HLCS	HGNC	ENSG00000159267				147	1	0.675676	144	38	20.8791
TTC3	0	genome.wustl.edu	37	21	38525304	38525304	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	38525304	38525304	T	C	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	missense	c.2467	p.C823R	1.000	superfamily_DEATH-like_dom	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				49	0	0	63	12	16
DSCR4	0	genome.wustl.edu	37	21	39493330	39493330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	39493330	39493330	G	A	SNP	DSCR4	ENST00000328264	human	ensembl	74_37	-1	known	missense	c.20	p.T7M	0.020	NULL	NULL	-	no_errors	DSCR4	HGNC	ENSG00000184029				47	0	0	82	12	12.766
KCNJ15	0	genome.wustl.edu	37	21	39671647	39671647	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	39671647	39671647	T	C	SNP	KCNJ15	ENST00000328656	human	ensembl	74_37	+1	known	missense	c.464	p.L155S	0.991	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551				99	0	0	87	21	19.4444
ETS2	0	genome.wustl.edu	37	21	40181960	40181960	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	40181960	40181960	T	C	SNP	ETS2	ENST00000360214	human	ensembl	74_37	+1	known	missense	c.2	p.M1T	1.000	pirsf_Transform_prot_C-ets	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_Transform_prot_C-ets,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETS2	HGNC	ENSG00000157557				18	0	0	25	5	16.6667
ZBTB21	0	genome.wustl.edu	37	21	43411690	43411690	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	43411690	43411690	C	T	SNP	ZBTB21	ENST00000310826	human	ensembl	74_37	-1	known	missense	c.2515	p.V839I	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB21	HGNC	ENSG00000173276				123	0	0	141	27	16.0714
UBASH3A	0	genome.wustl.edu	37	21	43863456	43863456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	43863456	43863456	G	A	SNP	UBASH3A	ENST00000319294	human	ensembl	74_37	+1	known	missense	c.1666	p.E556K	0.944	pfam_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,superfamily_SH3_domain,superfamily_UBA-like,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3A	HGNC	ENSG00000160185				34	0	0	34	4	10.5263
PKNOX1	0	genome.wustl.edu	37	21	44448975	44448975	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	44448975	44448975	A	G	SNP	PKNOX1	ENST00000291547	human	ensembl	74_37	+1	known	missense	c.1090	p.M364V	0.998	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PKNOX1	HGNC	ENSG00000160199				100	0	0	104	18	14.7541
C21orf33	0	genome.wustl.edu	37	21	45563112	45563112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	45563112	45563112	G	A	SNP	C21orf33	ENST00000291577	human	ensembl	74_37	+1	known	missense	c.547	p.A183T	1.000	pfam_ThiJ/PfpI	pfam_ThiJ/PfpI	-	no_errors	C21orf33	HGNC	ENSG00000160221				76	0	0	71	17	19.3182
ICOSLG	0	genome.wustl.edu	37	21	45657075	45657075	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	45657075	45657075	C	T	SNP	ICOSLG	ENST00000344330	human	ensembl	74_37	-1	known	silent	c.81	p.A27	0.014	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	ICOSLG	HGNC	ENSG00000160223				79	0	0	87	19	17.9245
POFUT2	0	genome.wustl.edu	37	21	46702346	46702346	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	46702346	46702346	T	C	SNP	POFUT2	ENST00000349485	human	ensembl	74_37	-1	known	missense	c.556	p.R186G	0.875	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866				46	0	0	66	8	10.8108
S100B	0	genome.wustl.edu	37	21	48019327	48019327	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	48019327	48019327	G	T	SNP	S100B	ENST00000291700	human	ensembl	74_37	-1	known	silent	c.228	p.A76	0.984	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_S100_Ca-bd_sub,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	S100B	HGNC	ENSG00000160307				124	0	0	145	30	17.1429
SLC25A18	0	genome.wustl.edu	37	22	18064145	18064145	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	18064145	18064145	G	A	SNP	SLC25A18	ENST00000327451	human	ensembl	74_37	+1	known	silent	c.165	p.T55	0.001	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A18	HGNC	ENSG00000182902				185	0	0	172	32	15.6863
MICAL3	0	genome.wustl.edu	37	22	18389447	18389447	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	18389447	18389447	C	A	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	missense	c.132	p.K44N	0.979	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				175	0	0	209	37	15.0407
ARVCF	0	genome.wustl.edu	37	22	19965081	19965081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	19965081	19965081	C	T	SNP	ARVCF	ENST00000263207	human	ensembl	74_37	-1	known	missense	c.1727	p.R576Q	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889				111	0	0	106	25	19.084
ZDHHC8	0	genome.wustl.edu	37	22	20130875	20130875	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	20130875	20130875	C	T	SNP	ZDHHC8	ENST00000405930	human	ensembl	74_37	+1	known	silent	c.1722	p.G574	0.991	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904				19	0	0	13	4	23.5294
SCARF2	0	genome.wustl.edu	37	22	20786261	20786261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	20786261	20786261	G	A	SNP	SCARF2	ENST00000405555	human	ensembl	74_37	-1	known	missense	c.188	p.T63M	0.998	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF2	HGNC	ENSG00000244486				28	0	0	35	11	23.913
AIFM3	0	genome.wustl.edu	37	22	21322261	21322261	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	21322261	21322261	C	T	SNP	AIFM3	ENST00000335375	human	ensembl	74_37	+1	known	nonsense	c.103	p.Q35*	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Rieske_2Fe-2S,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2	-	no_errors	AIFM3	HGNC	ENSG00000183773				73	0	0	80	12	13.0435
SLC7A4	0	genome.wustl.edu	37	22	21384146	21384146	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	21384146	21384146	C	A	SNP	SLC7A4	ENST00000382932	human	ensembl	74_37	-1	known	missense	c.1477	p.G493C	0.802	pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A4	HGNC	ENSG00000099960				50	0	0	40	9	18.3673
PPM1F	0	genome.wustl.edu	37	22	22285632	22285632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	22285632	22285632	G	A	SNP	PPM1F	ENST00000263212	human	ensembl	74_37	-1	known	missense	c.779	p.A260V	0.026	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1F	HGNC	ENSG00000100034				76	0	0	88	17	16.1905
RAB36	0	genome.wustl.edu	37	22	23503094	23503094	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	23503094	23503094	C	T	SNP	RAB36	ENST00000263116	human	ensembl	74_37	+1	known	silent	c.846	p.R282	0.001	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB36	HGNC	ENSG00000100228				99	0	0	102	17	14.2857
ZNF70	0	genome.wustl.edu	37	22	24086127	24086127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	24086127	24086127	G	A	SNP	ZNF70	ENST00000341976	human	ensembl	74_37	-1	known	missense	c.1201	p.R401W	0.553	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF70	HGNC	ENSG00000187792				185	0	0	220	49	18.2156
GGT5	0	genome.wustl.edu	37	22	24629866	24629866	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	24629866	24629866	A	T	SNP	GGT5	ENST00000398292	human	ensembl	74_37	-1	known	missense	c.280	p.F94I	1.000	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT5	HGNC	ENSG00000099998				101	0	0	102	21	17.0732
FAM211B	0	genome.wustl.edu	37	22	24982323	24982323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	24982323	24982323	C	T	SNP	FAM211B	ENST00000318753	human	ensembl	74_37	-1	known	missense	c.479	p.G160D	0.998	NULL	NULL	-	no_errors	FAM211B	HGNC	ENSG00000178026				403	0	0	363	68	15.7773
CCDC117	0	genome.wustl.edu	37	22	29169749	29169749	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	29169749	29169749	G	A	SNP	CCDC117	ENST00000249064	human	ensembl	74_37	+1	known	silent	c.222	p.E74	0.997	NULL	NULL	-	no_errors	CCDC117	HGNC	ENSG00000159873				45	0	0	63	5	7.35294
AP1B1	0	genome.wustl.edu	37	22	29750678	29750678	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	29750678	29750678	T	C	SNP	AP1B1	ENST00000357586	human	ensembl	74_37	-1	known	missense	c.899	p.Y300C	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,smart_Armadillo,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				94	0	0	106	17	13.8211
SMTN	0	genome.wustl.edu	37	22	31487726	31487726	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	31487726	31487726	A	G	SNP	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	missense	c.1525	p.I509V	0.996	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				43	0	0	37	4	9.7561
DEPDC5	0	genome.wustl.edu	37	22	32241050	32241050	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	32241050	32241050	C	A	SNP	DEPDC5	ENST00000266091	human	ensembl	74_37	+1	known	missense	c.2848	p.P950T	1.000	NULL	pfam_IML1,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150				91	0	0	122	19	13.4752
LARGE	0	genome.wustl.edu	37	22	34157419	34157419	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	34157419	34157419	C	T	SNP	LARGE	ENST00000354992	human	ensembl	74_37	-1	known	silent	c.45	p.S15	0.630	NULL	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424				137	0	0	167	24	12.5654
MYH9	0	genome.wustl.edu	37	22	36697759	36697759	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	36697759	36697759	G	A	SNP	MYH9	ENST00000495928	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MYH9	HGNC	ENSG00000100345				37	0	0	35	9	20.4545
MYH9	0	genome.wustl.edu	37	22	36745257	36745257	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	36745257	36745257	A	G	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.25	p.Y9H	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				48	0	0	47	14	22.9508
EIF3D	0	genome.wustl.edu	37	22	36916708	36916708	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	36916708	36916708	G	A	SNP	EIF3D	ENST00000216190	human	ensembl	74_37	-1	known	missense	c.493	p.R165C	0.110	pfam_eIF3d,pirsf_eIF3d	pfam_eIF3d,pirsf_eIF3d	-	no_errors	EIF3D	HGNC	ENSG00000100353				29	0	0	34	12	26.087
DMC1	0	genome.wustl.edu	37	22	38948670	38948670	+	Splice_Site	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	38948670	38948670	C	T	SNP	DMC1	ENST00000216024	human	ensembl	74_37	-1	known	splice_site	c.421+1	e6+1	1.000	-	-	-	no_errors	DMC1	HGNC	ENSG00000100206				25	0	0	50	7	12.2807
TNRC6B	0	genome.wustl.edu	37	22	40657998	40657998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	40657998	40657998	C	T	SNP	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	missense	c.278	p.P93L	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				39	0	0	21	5	19.2308
TTLL12	0	genome.wustl.edu	37	22	43569788	43569788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	43569788	43569788	C	T	SNP	TTLL12	ENST00000216129	human	ensembl	74_37	-1	known	missense	c.1274	p.R425H	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL12	HGNC	ENSG00000100304				75	0	0	72	16	18.1818
PARVB	0	genome.wustl.edu	37	22	44547380	44547380	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	44547380	44547380	G	A	SNP	PARVB	ENST00000406477	human	ensembl	74_37	+1	known	silent	c.891	p.V297	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVB	HGNC	ENSG00000188677				67	0	0	101	15	12.931
TBC1D22A	0	genome.wustl.edu	37	22	47188435	47188435	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	47188435	47188435	T	C	SNP	TBC1D22A	ENST00000337137	human	ensembl	74_37	+1	known	silent	c.81	p.G27	0.993	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22A	HGNC	ENSG00000054611				149	0	0	180	34	15.8879
SBF1	0	genome.wustl.edu	37	22	50905867	50905867	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	50905867	50905867	C	T	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.449	p.G150D	0.964	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				168	0	0	153	30	16.3934
TYMP	0	genome.wustl.edu	37	22	50967711	50967711	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	50967711	50967711	G	C	SNP	TYMP	ENST00000252029	human	ensembl	74_37	-1	known	missense	c.271	p.L91V	0.836	pfam_Glycosyl_Trfase_fam3_N_dom,superfamily_Glycosyl_Trfase_fam3_N_dom,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	pfam_Glycosyl_Trfase_fam3,pfam_Glycosyl_Trfase_fam3_N_dom,pfam_PYNP_C,superfamily_Glycosyl_Trfase_fam3,superfamily_PYNP_C,superfamily_Glycosyl_Trfase_fam3_N_dom,smart_PYNP_C,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	-	no_errors	TYMP	HGNC	ENSG00000025708				70	0	0	52	8	13.3333
BBX	0	genome.wustl.edu	37	3	107491837	107491837	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	107491837	107491837	C	T	SNP	BBX	ENST00000325805	human	ensembl	74_37	+1	known	silent	c.1269	p.P423	1.000	NULL	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	BBX	HGNC	ENSG00000114439				108	0	0	172	27	13.5678
MYH15	0	genome.wustl.edu	37	3	108124288	108124288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	108124288	108124288	G	A	SNP	MYH15	ENST00000273353	human	ensembl	74_37	-1	known	missense	c.4693	p.R1565C	0.362	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821				21	0	0	42	9	17.6471
MYH15	0	genome.wustl.edu	37	3	108129761	108129761	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	108129761	108129761	T	A	SNP	MYH15	ENST00000273353	human	ensembl	74_37	-1	known	missense	c.4224	p.R1408S	0.014	pfam_Myosin_tail,superfamily_Lambda_DNA-bd_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821				53	0	0	34	3	8.10811
KIAA1407	0	genome.wustl.edu	37	3	113723471	113723471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	113723471	113723471	G	A	SNP	KIAA1407	ENST00000545063	human	ensembl	74_37	-1	known	missense	c.1484	p.S495L	0.000	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617				161	0	0	189	41	17.8261
LSAMP	0	genome.wustl.edu	37	3	115561349	115561349	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	115561349	115561349	C	T	SNP	LSAMP	ENST00000490035	human	ensembl	74_37	-1	known	silent	c.726	p.S242	0.056	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LSAMP	HGNC	ENSG00000185565				72	0	0	49	9	15.5172
B4GALT4	0	genome.wustl.edu	37	3	118943093	118943093	+	Splice_Site	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	118943093	118943093	C	A	SNP	B4GALT4	ENST00000359213	human	ensembl	74_37	-1	known	splice_site	c.487-1	e3-1	1.000	-	-	-	no_errors	B4GALT4	HGNC	ENSG00000121578				32	0	0	41	9	18
ARHGAP31	0	genome.wustl.edu	37	3	119133473	119133473	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	119133473	119133473	G	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	silent	c.2697	p.Q899	0.998	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				164	1	0.606061	170	9	5.02793
MAATS1	0	genome.wustl.edu	37	3	119466108	119466108	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	119466108	119466108	C	T	SNP	MAATS1	ENST00000273390	human	ensembl	74_37	+1	known	silent	c.2049	p.S683	0.010	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	MAATS1	HGNC	ENSG00000183833				83	0	0	111	13	10.4839
GPR156	0	genome.wustl.edu	37	3	119887170	119887170	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	119887170	119887170	C	A	SNP	GPR156	ENST00000315843	human	ensembl	74_37	-1	known	missense	c.1154	p.R385M	0.795	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GPR156	HGNC	ENSG00000175697				59	0	0	99	17	14.6552
HSPBAP1	0	genome.wustl.edu	37	3	122471515	122471515	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	122471515	122471515	A	G	SNP	HSPBAP1	ENST00000306103	human	ensembl	74_37	-1	known	missense	c.748	p.F250L	0.999	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom,prints_HSPB1-associated_protein_1	-	no_errors	HSPBAP1	HGNC	ENSG00000169087				24	0	0	47	7	12.963
SLC12A8	0	genome.wustl.edu	37	3	124811006	124811006	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	124811006	124811006	A	G	SNP	SLC12A8	ENST00000423114	human	ensembl	74_37	-1	known	missense	c.1829	p.V610A	0.016	superfamily_ABC1_TM_dom	pfam_AA-permease/SLC12A_dom,superfamily_ABC1_TM_dom	-	no_errors	SLC12A8	HGNC	ENSG00000221955				60	0	0	103	7	6.36364
OSBPL11	0	genome.wustl.edu	37	3	125266321	125266321	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	125266321	125266321	G	A	SNP	OSBPL11	ENST00000296220	human	ensembl	74_37	-1	known	silent	c.1770	p.N590	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL11	HGNC	ENSG00000144909				94	0	0	127	31	19.6203
ROPN1B	0	genome.wustl.edu	37	3	125691012	125691012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	125691012	125691012	G	A	SNP	ROPN1B	ENST00000251776	human	ensembl	74_37	+1	known	missense	c.115	p.D39N	0.977	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	ROPN1B	HGNC	ENSG00000114547				53	0	0	69	18	20.6897
RAF1	0	genome.wustl.edu	37	3	12626102	12626102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	12626102	12626102	C	T	SNP	RAF1	ENST00000442415	human	ensembl	74_37	-1	known	missense	c.1918	p.A640T	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	RAF1	HGNC	ENSG00000132155				121	0	0	121	19	13.5714
PLXNA1	0	genome.wustl.edu	37	3	126707946	126707946	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	126707946	126707946	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.510	p.A170	0.023	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				47	0	0	47	9	16.0714
PLXNA1	0	genome.wustl.edu	37	3	126735448	126735448	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	126735448	126735448	C	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.3103	p.L1035I	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				111	0	0	106	24	18.4615
RHO	0	genome.wustl.edu	37	3	129251458	129251458	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	129251458	129251458	C	T	SNP	RHO	ENST00000296271	human	ensembl	74_37	+1	known	missense	c.779	p.A260V	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_Rhodopsin_N,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Rhodopsin,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	RHO	HGNC	ENSG00000163914				78	0	0	70	17	19.5402
IQSEC1	0	genome.wustl.edu	37	3	12977365	12977365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	12977365	12977365	C	T	SNP	IQSEC1	ENST00000273221	human	ensembl	74_37	-1	known	missense	c.1193	p.R398Q	0.992	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC1	HGNC	ENSG00000144711				68	0	0	65	10	13.3333
IQSEC1	0	genome.wustl.edu	37	3	12977560	12977560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	12977560	12977560	C	T	SNP	IQSEC1	ENST00000273221	human	ensembl	74_37	-1	known	missense	c.998	p.R333Q	0.995	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC1	HGNC	ENSG00000144711				120	1	0.826446	94	21	18.2609
NUDT16P1	0	genome.wustl.edu	37	3	131082241	131082241	+	RNA	SNP	G	G	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	131082241	131082241	G	C	SNP	NUDT16P1	ENST00000499077	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NUDT16P	Clone_based_vega_gene	ENSG00000246082				35	0	0	37	6	13.9535
STAG1	0	genome.wustl.edu	37	3	136287655	136287655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	136287655	136287655	C	T	SNP	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	missense	c.346	p.A116T	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007				38	0	0	41	5	10.8696
ESYT3	0	genome.wustl.edu	37	3	138193142	138193142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	138193142	138193142	C	T	SNP	ESYT3	ENST00000389567	human	ensembl	74_37	+1	known	missense	c.2416	p.R806C	0.996	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220				109	0	0	116	36	23.6842
NMNAT3	0	genome.wustl.edu	37	3	139279984	139279984	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	139279984	139279984	C	A	SNP	NMNAT3	ENST00000296202	human	ensembl	74_37	-1	known	missense	c.627	p.L209F	0.981	tigrfam_NAMN_adtrnsfrase	pfam_Cyt_trans-like,tigrfam_NAMN_adtrnsfrase	-	no_errors	NMNAT3	HGNC	ENSG00000163864				121	0	0	145	17	10.4938
TRIM42	0	genome.wustl.edu	37	3	140409957	140409957	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	140409957	140409957	A	C	SNP	TRIM42	ENST00000286349	human	ensembl	74_37	+1	known	missense	c.2008	p.T670P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890				117	0	0	184	24	11.5385
ZBTB38	0	genome.wustl.edu	37	3	141162696	141162696	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	141162696	141162696	C	A	SNP	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	missense	c.1469	p.P490H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311				77	0	0	137	20	12.7389
CNTN6	0	genome.wustl.edu	37	3	1424988	1424988	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	1424988	1424988	G	C	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.2413	p.A805P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				218	0	0	276	59	17.6119
PCOLCE2	0	genome.wustl.edu	37	3	142539750	142539750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	142539750	142539750	C	T	SNP	PCOLCE2	ENST00000295992	human	ensembl	74_37	-1	known	missense	c.1087	p.V363I	1.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_CUB_dom,pfam_Netrin_module_non-TIMP,superfamily_CUB_dom,superfamily_TIMP-like_OB-fold,smart_CUB_dom,smart_Netrin_module_non-TIMP,pfscan_CUB_dom,pfscan_Netrin_domain	-	no_errors	PCOLCE2	HGNC	ENSG00000163710				85	0	0	79	27	25.4717
U2SURP	0	genome.wustl.edu	37	3	142773855	142773855	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	142773855	142773855	C	T	SNP	U2SURP	ENST00000473835	human	ensembl	74_37	+1	known	missense	c.2845	p.P949S	1.000	NULL	pfam_Surp,pfam_RRM_dom,superfamily_Surp,superfamily_ENTH_VHS,smart_RRM_dom,smart_Surp,smart_CID_dom,pfscan_Surp,pfscan_RRM_dom	-	no_errors	U2SURP	HGNC	ENSG00000163714				21	0	0	33	6	15.3846
C3orf58	0	genome.wustl.edu	37	3	143691683	143691683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	143691683	143691683	G	A	SNP	C3orf58	ENST00000315691	human	ensembl	74_37	+1	known	missense	c.509	p.C170Y	1.000	NULL	NULL	-	no_errors	C3orf58	HGNC	ENSG00000181744				15	0	0	7	6	46.1538
AGTR1	0	genome.wustl.edu	37	3	148459562	148459562	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	148459562	148459562	T	C	SNP	AGTR1	ENST00000349243	human	ensembl	74_37	+1	known	missense	c.740	p.L247P	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ATII_AT1_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ATII_AT1_rcpt,prints_ATII_rcpt,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Formyl_pep_rcpt,prints_Brdyknn_rcpt	-	no_errors	AGTR1	HGNC	ENSG00000144891				68	0	0	105	16	13.2231
GYG1	0	genome.wustl.edu	37	3	148741865	148741865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	148741865	148741865	C	T	SNP	GYG1	ENST00000345003	human	ensembl	74_37	+1	known	missense	c.634	p.H212Y	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG1	HGNC	ENSG00000163754				53	0	0	87	12	12.1212
TSC22D2	0	genome.wustl.edu	37	3	150128715	150128715	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	150128715	150128715	T	C	SNP	TSC22D2	ENST00000361875	human	ensembl	74_37	+1	known	silent	c.1578	p.V526	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D2	HGNC	ENSG00000196428				86	0	0	85	19	18.2692
MED12L	0	genome.wustl.edu	37	3	151105776	151105776	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	151105776	151105776	G	A	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.5162	p.R1721H	0.992	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				92	0	0	86	14	14
MBNL1	0	genome.wustl.edu	37	3	152163087	152163087	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	152163087	152163087	A	G	SNP	MBNL1	ENST00000282486	human	ensembl	74_37	+1	known	missense	c.566	p.Q189R	1.000	smart_Znf_CCCH	smart_Znf_CCCH	-	no_errors	MBNL1	HGNC	ENSG00000152601				53	0	0	88	13	12.8713
GMPS	0	genome.wustl.edu	37	3	155652816	155652816	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	155652816	155652816	T	C	SNP	GMPS	ENST00000496455	human	ensembl	74_37	+1	known	silent	c.1788	p.H596	0.991	pfam_GMP_synth_C	pfam_GATASE,pfam_GMP_synth_C,pfam_Peptidase_C26,pfam_NAD/GMP_synthase,pfam_QueC,pfam_Asn_synthase,pfam_tRNA-specific_2-thiouridylase,tigrfam_GMP_synth_N	-	no_errors	GMPS	HGNC	ENSG00000163655				166	0	0	302	43	12.4638
KCNAB1	0	genome.wustl.edu	37	3	156009716	156009716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	156009716	156009716	G	A	SNP	KCNAB1	ENST00000302490	human	ensembl	74_37	+1	known	missense	c.20	p.C7Y	1.000	NULL	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB1	HGNC	ENSG00000169282				97	0	0	115	17	12.8788
KCNAB1	0	genome.wustl.edu	37	3	156009905	156009905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	156009905	156009905	G	A	SNP	KCNAB1	ENST00000302490	human	ensembl	74_37	+1	known	missense	c.209	p.G70D	1.000	superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB1	HGNC	ENSG00000169282				53	0	0	56	7	11.1111
KCNAB1	0	genome.wustl.edu	37	3	156232930	156232930	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	156232930	156232930	G	A	SNP	KCNAB1	ENST00000490337	human	ensembl	74_37	+1	known	silent	c.786	p.P262	0.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB1	HGNC	ENSG00000169282				77	0	0	113	28	19.8582
VEPH1	0	genome.wustl.edu	37	3	157081510	157081510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	157081510	157081510	C	T	SNP	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	missense	c.1378	p.V460M	0.000	NULL	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415				85	0	0	118	30	20.2703
GALNT15	0	genome.wustl.edu	37	3	16261500	16261500	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	16261500	16261500	C	T	SNP	GALNT15	ENST00000339732	human	ensembl	74_37	+1	known	silent	c.1608	p.C536	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT15	HGNC	ENSG00000131386				233	0	0	221	41	15.6489
SLITRK3	0	genome.wustl.edu	37	3	164905717	164905717	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	164905717	164905717	C	T	SNP	SLITRK3	ENST00000241274	human	ensembl	74_37	-1	known	missense	c.2902	p.E968K	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871				125	0	0	247	33	11.7857
ACTRT3	0	genome.wustl.edu	37	3	169486125	169486125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	169486125	169486125	G	A	SNP	ACTRT3	ENST00000330368	human	ensembl	74_37	-1	known	missense	c.214	p.R72C	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT3	HGNC	ENSG00000184378				58	0	0	74	12	13.9535
SEC62	0	genome.wustl.edu	37	3	169710494	169710494	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	169710494	169710494	G	A	SNP	SEC62	ENST00000337002	human	ensembl	74_37	+1	known	silent	c.843	p.L281	1.000	pfam_Sec62	pfam_Sec62,superfamily_ABC1_TM_dom	-	no_errors	SEC62	HGNC	ENSG00000008952				95	0	0	156	29	15.6757
SEC62	0	genome.wustl.edu	37	3	169710750	169710750	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	169710750	169710750	A	G	SNP	SEC62	ENST00000337002	human	ensembl	74_37	+1	known	missense	c.1099	p.T367A	1.000	NULL	pfam_Sec62,superfamily_ABC1_TM_dom	-	no_errors	SEC62	HGNC	ENSG00000008952				29	0	0	57	10	14.9254
ECT2	0	genome.wustl.edu	37	3	172525679	172525679	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	172525679	172525679	C	T	SNP	ECT2	ENST00000427830	human	ensembl	74_37	+1	known	nonsense	c.2272	p.R758*	1.000	NULL	pfam_DH-domain,pfam_BRCT_dom,superfamily_DH-domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DH-domain,pfscan_BRCT_dom,pfscan_DH-domain	-	no_errors	ECT2	HGNC	ENSG00000114346				43	0	0	82	21	20.3883
EIF2B5	0	genome.wustl.edu	37	3	183858392	183858392	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	183858392	183858392	C	T	SNP	EIF2B5	ENST00000273783	human	ensembl	74_37	+1	known	nonsense	c.1030	p.R344*	1.000	superfamily_Trimer_LpxA-like	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191				167	0	0	155	29	15.7609
FETUB	0	genome.wustl.edu	37	3	186362568	186362568	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	186362568	186362568	C	T	SNP	FETUB	ENST00000265029	human	ensembl	74_37	+1	known	silent	c.453	p.C151	0.961	smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	FETUB	HGNC	ENSG00000090512				118	0	0	199	23	10.3604
RTP4	0	genome.wustl.edu	37	3	187088874	187088874	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	187088874	187088874	G	T	SNP	RTP4	ENST00000259030	human	ensembl	74_37	+1	known	missense	c.454	p.A152S	0.000	NULL	NULL	-	no_errors	RTP4	HGNC	ENSG00000136514				46	0	0	66	14	17.5
BCL6	0	genome.wustl.edu	37	3	187447070	187447070	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	187447070	187447070	A	G	SNP	BCL6	ENST00000232014	human	ensembl	74_37	-1	known	missense	c.1123	p.W375R	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6	HGNC	ENSG00000113916				399	1	0.25	471	87	15.5914
TP63	0	genome.wustl.edu	37	3	189608582	189608582	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	189608582	189608582	T	A	SNP	TP63	ENST00000264731	human	ensembl	74_37	+1	known	missense	c.1657	p.L553I	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282				33	0	0	47	7	12.963
LSG1	0	genome.wustl.edu	37	3	194366918	194366918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	194366918	194366918	C	T	SNP	LSG1	ENST00000265245	human	ensembl	74_37	-1	known	missense	c.1598	p.R533H	1.000	NULL	pfam_GTP_binding_domain,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	LSG1	HGNC	ENSG00000041802				192	0	0	199	39	16.3866
KCNH8	0	genome.wustl.edu	37	3	19575103	19575103	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	19575103	19575103	C	G	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.2836	p.Q946E	0.950	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				75	0	0	97	20	17.094
KCNH8	0	genome.wustl.edu	37	3	19575113	19575113	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	19575113	19575113	T	G	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.2846	p.L949R	0.994	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				79	0	0	109	19	14.8438
CRBN	0	genome.wustl.edu	37	3	3195744	3195744	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	3195744	3195744	A	G	SNP	CRBN	ENST00000231948	human	ensembl	74_37	-1	known	missense	c.851	p.V284A	1.000	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	-	no_errors	CRBN	HGNC	ENSG00000113851				49	0	0	67	6	8.21918
VILL	0	genome.wustl.edu	37	3	38035424	38035424	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	38035424	38035424	C	T	SNP	VILL	ENST00000283713	human	ensembl	74_37	+1	known	silent	c.96	p.Y32	0.996	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				147	0	0	148	37	20
DLEC1	0	genome.wustl.edu	37	3	38149177	38149177	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	38149177	38149177	C	T	SNP	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	silent	c.2967	p.T989	0.000	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226				66	0	0	62	10	13.8889
ACAA1	0	genome.wustl.edu	37	3	38173437	38173437	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	38173437	38173437	T	C	SNP	ACAA1	ENST00000333167	human	ensembl	74_37	-1	known	missense	c.383	p.Q128R	1.000	pfam_Thiolase_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,pfam_ACP_syn_III_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAA1	HGNC	ENSG00000060971				57	0	0	71	10	12.3457
MYD88	0	genome.wustl.edu	37	3	38181390	38181390	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	38181390	38181390	C	G	SNP	MYD88	ENST00000417037	human	ensembl	74_37	+1	known	missense	c.403	p.Q135E	0.969	superfamily_DEATH-like_dom,pirsf_Myelin_different_resp_MyD88	pfam_TIR_dom,pfam_Death_domain,superfamily_DEATH-like_dom,superfamily_TIR_dom,smart_Death_domain,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_Death_domain,pfscan_TIR_dom	-	no_errors	MYD88	HGNC	ENSG00000172936				62	0	0	87	10	10.3093
SCN10A	0	genome.wustl.edu	37	3	38739984	38739984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	38739984	38739984	C	T	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.4727	p.R1576H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				124	0	0	163	30	15.544
XIRP1	0	genome.wustl.edu	37	3	39230627	39230627	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	39230627	39230627	C	T	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	missense	c.310	p.D104N	1.000	pfam_Actin-binding_Xin_repeat	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				82	0	0	100	15	13.0435
ZNF620	0	genome.wustl.edu	37	3	40557736	40557736	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	40557736	40557736	T	A	SNP	ZNF620	ENST00000314529	human	ensembl	74_37	+1	known	nonsense	c.651	p.C217*	0.648	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF620	HGNC	ENSG00000177842				72	0	0	109	22	16.7939
ZBTB47	0	genome.wustl.edu	37	3	42701038	42701038	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	42701038	42701038	G	A	SNP	ZBTB47	ENST00000232974	human	ensembl	74_37	+1	known	silent	c.1191	p.G397	0.997	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB47	HGNC	ENSG00000114853				29	0	0	28	9	24.3243
SNRK	0	genome.wustl.edu	37	3	43389492	43389492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	43389492	43389492	G	A	SNP	SNRK	ENST00000296088	human	ensembl	74_37	+1	known	missense	c.1741	p.G581R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SNRK	HGNC	ENSG00000163788				89	0	0	95	29	23.3871
KIF15	0	genome.wustl.edu	37	3	44893381	44893381	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	44893381	44893381	G	T	SNP	KIF15	ENST00000326047	human	ensembl	74_37	+1	known	missense	c.3909	p.Q1303H	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808				110	0	0	132	33	20
CCR5	0	genome.wustl.edu	37	3	46415362	46415362	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	46415362	46415362	C	T	SNP	CCR5	ENST00000292303	human	ensembl	74_37	+1	known	silent	c.969	p.C323	0.001	prints_Chemokine_CCR5	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_rcpt,prints_GPCR_Rhodpsn,prints_Chemokine_CCR5,prints_Chemokine_CCR1,prints_ATII_rcpt	-	no_errors	CCR5	HGNC	ENSG00000160791				160	0	0	152	37	19.5767
PRSS50	0	genome.wustl.edu	37	3	46754421	46754421	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	46754421	46754421	C	T	SNP	PRSS50	ENST00000315170	human	ensembl	74_37	-1	known	silent	c.891	p.A297	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS50	HGNC	ENSG00000206549				180	0	0	216	40	15.625
PRSS42	0	genome.wustl.edu	37	3	46871956	46871956	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	46871956	46871956	C	T	SNP	PRSS42	ENST00000429665	human	ensembl	74_37	-1	known	missense	c.820	p.E274K	0.013	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS42	HGNC	ENSG00000178055				20	0	0	25	10	28.5714
MYL3	0	genome.wustl.edu	37	3	46901099	46901099	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	46901099	46901099	G	T	SNP	MYL3	ENST00000292327	human	ensembl	74_37	-1	known	missense	c.347	p.P116H	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	MYL3	HGNC	ENSG00000160808				152	0	0	181	35	16.2037
ITPR1	0	genome.wustl.edu	37	3	4747965	4747965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	4747965	4747965	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.4727	p.R1576H	0.925	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				66	0	0	63	13	17.1053
ELP6	0	genome.wustl.edu	37	3	47537654	47537654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	47537654	47537654	C	T	SNP	ELP6	ENST00000296149	human	ensembl	74_37	-1	known	missense	c.706	p.A236T	0.005	pfam_UPF0405	pfam_UPF0405	-	no_errors	ELP6	HGNC	ENSG00000163832				66	0	0	80	14	14.8936
CELSR3	0	genome.wustl.edu	37	3	48699463	48699463	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	48699463	48699463	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.605	p.A202V	0.000	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				218	0	0	235	48	16.9611
AMT	0	genome.wustl.edu	37	3	49459831	49459831	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	49459831	49459831	A	G	SNP	AMT	ENST00000273588	human	ensembl	74_37	-1	known	missense	c.53	p.F18S	0.000	pirsf_GcvT	pfam_GCV_T_N,pfam_GCV_T_C,pirsf_GcvT,tigrfam_GcvT	-	no_errors	AMT	HGNC	ENSG00000145020				50	0	0	59	10	14.4928
MON1A	0	genome.wustl.edu	37	3	49947673	49947673	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	49947673	49947673	G	A	SNP	MON1A	ENST00000296473	human	ensembl	74_37	-1	known	missense	c.1549	p.R517C	1.000	pfam_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,superfamily_Longin-like_dom,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1A	HGNC	ENSG00000164077				80	0	0	67	12	15.1899
SPCS1	0	genome.wustl.edu	37	3	52740186	52740186	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	52740186	52740186	T	G	SNP	SPCS1	ENST00000233025	human	ensembl	74_37	+1	known	missense	c.125	p.L42R	0.000	NULL	pfam_SPC12	-	no_errors	SPCS1	HGNC	ENSG00000114902				8	0	0	5	11	68.75
SPCS1	0	genome.wustl.edu	37	3	52741730	52741730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	52741730	52741730	C	T	SNP	SPCS1	ENST00000233025	human	ensembl	74_37	+1	known	missense	c.412	p.R138C	1.000	pfam_SPC12	pfam_SPC12	-	no_errors	SPCS1	HGNC	ENSG00000114902				138	0	0	180	37	17.0507
SFMBT1	0	genome.wustl.edu	37	3	52962274	52962274	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	52962274	52962274	G	A	SNP	SFMBT1	ENST00000358080	human	ensembl	74_37	-1	known	silent	c.981	p.A327	0.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935				123	0	0	132	34	20.4819
C3orf67	0	genome.wustl.edu	37	3	58817526	58817526	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	58817526	58817526	T	G	SNP	C3orf67	ENST00000482387	human	ensembl	74_37	-1	known	missense	c.1686	p.E562D	0.383	NULL	NULL	-	no_errors	C3orf67	HGNC	ENSG00000163689				59	0	0	83	16	16.1616
FAM19A4	0	genome.wustl.edu	37	3	68802150	68802150	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	68802150	68802150	T	G	SNP	FAM19A4	ENST00000295569	human	ensembl	74_37	-1	known	missense	c.150	p.Q50H	0.994	pfam_Chemokine-like_FAM19A2	pfam_Chemokine-like_FAM19A2	-	no_errors	FAM19A4	HGNC	ENSG00000163377				43	0	0	53	8	13.1148
GRM7	0	genome.wustl.edu	37	3	6903381	6903381	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	6903381	6903381	C	T	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	silent	c.306	p.G102	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				59	0	0	46	10	17.8571
TMF1	0	genome.wustl.edu	37	3	69077434	69077434	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	69077434	69077434	T	A	SNP	TMF1	ENST00000543976	human	ensembl	74_37	-1	known	missense	c.2616	p.E872D	1.000	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747				30	0	0	53	6	10.1695
LMOD3	0	genome.wustl.edu	37	3	69168250	69168250	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	69168250	69168250	A	G	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	missense	c.1256	p.M419T	1.000	NULL	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380				106	0	0	93	26	21.8487
GPR27	0	genome.wustl.edu	37	3	71804103	71804103	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	71804103	71804103	C	T	SNP	GPR27	ENST00000304411	human	ensembl	74_37	+1	known	silent	c.903	p.V301	0.813	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR27	HGNC	ENSG00000170837				58	0	0	47	11	18.9655
GRM7	0	genome.wustl.edu	37	3	7620324	7620324	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	7620324	7620324	G	A	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	silent	c.1731	p.Q577	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				128	0	0	165	24	12.6984
ROBO2	0	genome.wustl.edu	37	3	77147246	77147246	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	77147246	77147246	C	T	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.143	p.T48M	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				46	0	0	47	8	14.5455
OXTR	0	genome.wustl.edu	37	3	8809146	8809146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	8809146	8809146	G	A	SNP	OXTR	ENST00000316793	human	ensembl	74_37	-1	known	missense	c.728	p.A243V	0.003	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Oxytocn_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OXTR	HGNC	ENSG00000180914				34	0	0	27	4	12.9032
MTHFD2P1	0	genome.wustl.edu	37	3	95374406	95374406	+	RNA	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	95374406	95374406	T	C	SNP	MTHFD2P1	ENST00000494840	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MTHFD2P1	HGNC	ENSG00000244681				61	0	0	110	15	12
MINA	0	genome.wustl.edu	37	3	97686125	97686125	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	97686125	97686125	A	G	SNP	MINA	ENST00000333396	human	ensembl	74_37	-1	known	missense	c.313	p.C105R	0.989	pfam_JmjC_dom	pfam_JmjC_dom,pfscan_JmjC_dom	-	no_errors	MINA	HGNC	ENSG00000170854				332	0	0	487	71	12.724
OR5H1	0	genome.wustl.edu	37	3	97852335	97852335	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	97852335	97852335	C	T	SNP	OR5H1	ENST00000354565	human	ensembl	74_37	+1	known	missense	c.794	p.P265L	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192				86	0	0	129	23	15.1316
RPUSD3	0	genome.wustl.edu	37	3	9883494	9883494	+	RNA	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	9883494	9883494	A	G	SNP	RPUSD3	ENST00000485705	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RPUSD3	HGNC	ENSG00000156990				14	0	0	10	4	28.5714
FILIP1L	0	genome.wustl.edu	37	3	99569707	99569707	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	99569707	99569707	A	G	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	silent	c.813	p.H271	1.000	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				239	0	0	317	64	16.7979
COL25A1	0	genome.wustl.edu	37	4	110223091	110223091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	110223091	110223091	G	A	SNP	COL25A1	ENST00000399132	human	ensembl	74_37	-1	known	missense	c.85	p.R29W	0.000	NULL	pfam_Collagen	-	no_errors	COL25A1	HGNC	ENSG00000188517				120	0	0	107	19	15.0794
ANK2	0	genome.wustl.edu	37	4	114161659	114161659	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	114161659	114161659	C	A	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.712	p.H238N	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				79	0	0	114	17	12.9771
ANK2	0	genome.wustl.edu	37	4	114274836	114274836	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	114274836	114274836	C	T	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	nonsense	c.5062	p.Q1688*	0.001	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				126	0	0	116	13	10.0775
NDNF	0	genome.wustl.edu	37	4	121958509	121958509	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	121958509	121958509	T	C	SNP	NDNF	ENST00000379692	human	ensembl	74_37	-1	known	missense	c.617	p.K206R	1.000	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	NDNF	HGNC	ENSG00000173376				162	0	0	191	44	18.7234
QRFPR	0	genome.wustl.edu	37	4	122254150	122254150	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	122254150	122254150	G	T	SNP	QRFPR	ENST00000394427	human	ensembl	74_37	-1	known	missense	c.623	p.P208H	0.977	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	QRFPR	HGNC	ENSG00000186867				97	0	0	127	24	15.894
PCDH10	0	genome.wustl.edu	37	4	134072535	134072535	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	134072535	134072535	A	C	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.1240	p.T414P	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				303	0	0	288	42	12.7273
PCDH10	0	genome.wustl.edu	37	4	134072536	134072536	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	134072536	134072536	C	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.1241	p.T414N	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				306	0	0	292	43	12.8358
MMAA	0	genome.wustl.edu	37	4	146563587	146563587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	146563587	146563587	G	A	SNP	MMAA	ENST00000281317	human	ensembl	74_37	+1	known	missense	c.512	p.G171E	1.000	pfam_ArgK,pfam_CobW/HypB/UreG_dom,superfamily_P-loop_NTPase,tigrfam_ArgK	pfam_ArgK,pfam_CobW/HypB/UreG_dom,superfamily_P-loop_NTPase,tigrfam_ArgK	-	no_errors	MMAA	HGNC	ENSG00000151611				188	0	0	298	48	13.8728
SFRP2	0	genome.wustl.edu	37	4	154702668	154702668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	154702668	154702668	G	A	SNP	SFRP2	ENST00000274063	human	ensembl	74_37	-1	known	missense	c.823	p.R275W	1.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP2	HGNC	ENSG00000145423				91	0	0	81	15	15.625
NPY2R	0	genome.wustl.edu	37	4	156135999	156135999	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	156135999	156135999	A	G	SNP	NPY2R	ENST00000329476	human	ensembl	74_37	+1	known	missense	c.908	p.Y303C	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY2_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	NPY2R	HGNC	ENSG00000185149				60	0	0	58	12	17.1429
TLL1	0	genome.wustl.edu	37	4	166910643	166910643	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	166910643	166910643	G	T	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.280	p.G94C	1.000	pirsf_BMP_1/tolloid-like	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				76	0	0	87	24	21.6216
CLCN3	0	genome.wustl.edu	37	4	170618478	170618478	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	170618478	170618478	T	C	SNP	CLCN3	ENST00000347613	human	ensembl	74_37	+1	known	missense	c.1156	p.Y386H	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-3	-	no_errors	CLCN3	HGNC	ENSG00000109572				136	0	0	170	52	23.4234
POLN	0	genome.wustl.edu	37	4	2172859	2172859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	2172859	2172859	C	T	SNP	POLN	ENST00000382865	human	ensembl	74_37	-1	known	missense	c.1424	p.R475Q	0.980	pfam_DNA-dir_DNA_pol_A_palm_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997				51	0	0	123	20	13.986
CCKAR	0	genome.wustl.edu	37	4	26491091	26491091	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	26491091	26491091	A	G	SNP	CCKAR	ENST00000295589	human	ensembl	74_37	-1	known	missense	c.128	p.V43A	1.000	pfam_CholecystokininA_recpt_N,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394				123	0	0	109	24	18.0451
NSG1	0	genome.wustl.edu	37	4	4389450	4389450	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	4389450	4389450	G	A	SNP	NSG1	ENST00000397958	human	ensembl	74_37	+1	known	missense	c.94	p.D32N	1.000	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	-	no_errors	NSG1	Uniprot_gn	ENSG00000168824				117	0	0	130	14	9.72222
ATP10D	0	genome.wustl.edu	37	4	47559905	47559905	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	47559905	47559905	C	T	SNP	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	silent	c.2049	p.P683	0.000	superfamily_HAD-like_dom	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				119	1	0.833333	100	20	16.6667
KDR	0	genome.wustl.edu	37	4	55981455	55981455	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	55981455	55981455	A	C	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	missense	c.482	p.L161R	1.000	smart_Ig_sub	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052				36	0	0	65	10	13.3333
CLOCK	0	genome.wustl.edu	37	4	56336882	56336882	+	Splice_Site	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	56336882	56336882	A	G	SNP	CLOCK	ENST00000309964	human	ensembl	74_37	-1	known	splice_site	c.438+2	e5+2	1.000	-	-	-	no_errors	CLOCK	HGNC	ENSG00000134852				60	0	0	84	14	14.2857
HOPX	0	genome.wustl.edu	37	4	57522176	57522176	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	57522176	57522176	G	A	SNP	HOPX	ENST00000554144	human	ensembl	74_37	-1	known	silent	c.45	p.R15	0.969	NULL	superfamily_Homeodomain-like	-	no_errors	HOPX	HGNC	ENSG00000171476				17	0	0	22	5	18.5185
MAN2B2	0	genome.wustl.edu	37	4	6596373	6596373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	6596373	6596373	C	T	SNP	MAN2B2	ENST00000285599	human	ensembl	74_37	+1	known	missense	c.971	p.T324M	1.000	pfam_Glyco_hydro_38_N,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288				50	0	0	50	10	16.6667
TMPRSS11D	0	genome.wustl.edu	37	4	68699069	68699069	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	68699069	68699069	A	G	SNP	TMPRSS11D	ENST00000283916	human	ensembl	74_37	-1	known	missense	c.545	p.L182S	0.855	pirsf_Pept_S1A_HAT/DESC1,superfamily_Trypsin-like_Pept_dom	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_SEA_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SEA_dom,pfscan_Peptidase_S1	-	no_errors	TMPRSS11D	HGNC	ENSG00000153802				217	0	0	250	44	14.966
UGT2B28	0	genome.wustl.edu	37	4	70152481	70152481	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	70152481	70152481	A	G	SNP	UGT2B28	ENST00000335568	human	ensembl	74_37	+1	known	silent	c.882	p.E294	0.999	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B28	HGNC	ENSG00000135226				229	0	0	355	21	5.58511
AMBN	0	genome.wustl.edu	37	4	71467311	71467311	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	71467311	71467311	A	G	SNP	AMBN	ENST00000322937	human	ensembl	74_37	+1	known	silent	c.471	p.E157	0.022	pfam_Amelin,smart_Amelin	pfam_Amelin,smart_Amelin	-	no_errors	AMBN	HGNC	ENSG00000178522				133	0	0	148	28	15.9091
IGJ	0	genome.wustl.edu	37	4	71532173	71532173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	71532173	71532173	G	A	SNP	IGJ	ENST00000543780	human	ensembl	74_37	-1	known	missense	c.35	p.A12V	0.974	NULL	NULL	-	no_errors	IGJ	HGNC	ENSG00000132465				49	0	0	90	12	11.7647
CCDC158	0	genome.wustl.edu	37	4	77292635	77292635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	77292635	77292635	G	A	SNP	CCDC158	ENST00000388914	human	ensembl	74_37	-1	known	missense	c.1084	p.R362W	0.991	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749				39	0	0	62	16	20.5128
SHROOM3	0	genome.wustl.edu	37	4	77692019	77692019	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	77692019	77692019	G	A	SNP	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	missense	c.5590	p.G1864S	0.499	pfam_ASD2	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771				166	0	0	152	33	17.8378
PRDM8	0	genome.wustl.edu	37	4	81124621	81124621	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	81124621	81124621	C	A	SNP	PRDM8	ENST00000339711	human	ensembl	74_37	+1	known	missense	c.2005	p.P669T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM8	HGNC	ENSG00000152784				34	0	0	39	6	13.3333
SH3TC1	0	genome.wustl.edu	37	4	8229061	8229061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	8229061	8229061	G	A	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	missense	c.1640	p.R547Q	1.000	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				36	0	0	26	9	25.7143
AFF1	0	genome.wustl.edu	37	4	87968052	87968052	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	87968052	87968052	C	A	SNP	AFF1	ENST00000395146	human	ensembl	74_37	+1	known	missense	c.365	p.S122Y	0.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493				106	0	0	116	25	17.7305
GAK	0	genome.wustl.edu	37	4	887712	887712	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	887712	887712	T	C	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	missense	c.827	p.Y276C	0.996	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950				48	0	0	61	6	8.95522
ABCG2	0	genome.wustl.edu	37	4	89020553	89020553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	89020553	89020553	C	T	SNP	ABCG2	ENST00000237612	human	ensembl	74_37	-1	known	missense	c.1415	p.G472E	1.000	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG2	HGNC	ENSG00000118777				63	0	0	98	23	19.0083
TMEM175	0	genome.wustl.edu	37	4	946218	946218	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	946218	946218	A	G	SNP	TMEM175	ENST00000264771	human	ensembl	74_37	+1	known	missense	c.442	p.I148V	1.000	NULL	pfam_DUF1211_TMEM175	-	no_errors	TMEM175	HGNC	ENSG00000127419				198	0	0	200	48	19.3548
SLC12A7	0	genome.wustl.edu	37	5	1076887	1076887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	1076887	1076887	G	A	SNP	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	missense	c.1670	p.A557V	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504				104	0	0	113	21	15.6716
FER	0	genome.wustl.edu	37	5	108523207	108523207	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	108523207	108523207	A	G	SNP	FER	ENST00000281092	human	ensembl	74_37	+1	known	silent	c.2400	p.K800	0.378	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FER	HGNC	ENSG00000151422				53	0	0	83	9	9.78261
APC	0	genome.wustl.edu	37	5	112178211	112178211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	112178211	112178211	C	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.6920	p.S2307L	0.994	pfam_APC_basic_dom	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				96	0	0	99	21	17.5
DMXL1	0	genome.wustl.edu	37	5	118556667	118556667	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	118556667	118556667	A	G	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	missense	c.8168	p.D2723G	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				48	0	0	73	13	15.1163
TERT	0	genome.wustl.edu	37	5	1294623	1294623	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	1294623	1294623	C	T	SNP	TERT	ENST00000310581	human	ensembl	74_37	-1	known	silent	c.378	p.T126	0.014	NULL	pfam_Telomerase_RBD,pfam_RVT,smart_Telomerase_RBD,pfscan_RVT,prints_Telomerase_RT	-	no_errors	TERT	HGNC	ENSG00000164362				21	0	0	24	5	17.2414
RAPGEF6	0	genome.wustl.edu	37	5	130939000	130939000	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	130939000	130939000	C	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	74_37	-1	known	missense	c.161	p.R54L	1.000	superfamily_cNMP-bd-like	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987				67	0	0	128	18	12.3288
PDLIM4	0	genome.wustl.edu	37	5	131607542	131607542	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	131607542	131607542	C	T	SNP	PDLIM4	ENST00000253754	human	ensembl	74_37	+1	known	silent	c.729	p.G243	0.013	NULL	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM4	HGNC	ENSG00000131435				46	0	0	44	13	22.807
C5orf15	0	genome.wustl.edu	37	5	133304225	133304225	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	133304225	133304225	C	T	SNP	C5orf15	ENST00000231512	human	ensembl	74_37	-1	known	silent	c.51	p.L17	0.049	NULL	NULL	-	no_errors	C5orf15	HGNC	ENSG00000113583				28	0	0	20	4	16.6667
DNAH5	0	genome.wustl.edu	37	5	13754314	13754314	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	13754314	13754314	A	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.10553	p.V3518A	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				119	0	0	246	27	9.89011
MATR3	0	genome.wustl.edu	37	5	138650379	138650379	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	138650379	138650379	A	G	SNP	MATR3	ENST00000361059	human	ensembl	74_37	+1	known	missense	c.928	p.I310V	1.000	smart_Znf_U1	smart_Znf_U1,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	MATR3	HGNC	ENSG00000015479				54	0	0	89	20	18.3486
NRG2	0	genome.wustl.edu	37	5	139231224	139231224	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	139231224	139231224	G	A	SNP	NRG2	ENST00000545385	human	ensembl	74_37	-1	known	silent	c.1743	p.S581	0.378	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom	-	no_errors	NRG2	HGNC	ENSG00000158458				128	0	0	116	25	17.7305
APBB3	0	genome.wustl.edu	37	5	139942072	139942072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	139942072	139942072	G	A	SNP	APBB3	ENST00000356738	human	ensembl	74_37	-1	known	missense	c.364	p.R122C	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB3	HGNC	ENSG00000113108				326	1	0.30581	303	46	13.1805
HARS	0	genome.wustl.edu	37	5	140056256	140056256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	140056256	140056256	C	T	SNP	HARS	ENST00000504156	human	ensembl	74_37	-1	known	missense	c.1177	p.V393M	0.978	pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,tigrfam_His-tRNA-ligase	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_His-tRNA-ligase	-	no_errors	HARS	HGNC	ENSG00000170445				242	0	0	263	38	12.6246
PCDHA9	0	genome.wustl.edu	37	5	140229932	140229932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	140229932	140229932	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	+1	known	missense	c.1852	p.A618T	0.007	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961				193	0	0	157	37	19.0722
PCDHAC2	0	genome.wustl.edu	37	5	140348878	140348878	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	140348878	140348878	C	A	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	missense	c.2527	p.L843M	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				53	0	0	57	13	18.5714
PCDHB7	0	genome.wustl.edu	37	5	140553092	140553092	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	140553092	140553092	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.676	p.A226T	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				113	0	0	93	19	16.9643
PCDHB11	0	genome.wustl.edu	37	5	140581696	140581696	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	140581696	140581696	T	C	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	silent	c.2349	p.S783	0.007	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				57	0	0	74	18	19.5652
PCDHB14	0	genome.wustl.edu	37	5	140605247	140605247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	140605247	140605247	C	T	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.2170	p.R724C	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				254	1	0.392157	312	50	13.8122
PCDHB18	0	genome.wustl.edu	37	5	140616129	140616129	+	RNA	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	140616129	140616129	A	G	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				135	1	0.735294	104	21	16.8
PCDHGA2	0	genome.wustl.edu	37	5	140720764	140720764	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	140720764	140720764	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	silent	c.2226	p.G742	0.111	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				181	0	0	177	43	19.5455
PCDHGA10	0	genome.wustl.edu	37	5	140794641	140794641	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	140794641	140794641	G	A	SNP	PCDHGA10	ENST00000398610	human	ensembl	74_37	+1	known	silent	c.1899	p.A633	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846				214	0	0	164	30	15.4639
TRIO	0	genome.wustl.edu	37	5	14507244	14507244	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	14507244	14507244	C	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.8626	p.R2876C	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				62	0	0	49	30	37.9747
ABLIM3	0	genome.wustl.edu	37	5	148619447	148619447	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	148619447	148619447	C	T	SNP	ABLIM3	ENST00000309868	human	ensembl	74_37	+1	known	silent	c.1200	p.R400	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM3	HGNC	ENSG00000173210				131	0	0	149	19	11.3095
ARSI	0	genome.wustl.edu	37	5	149681757	149681757	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	149681757	149681757	G	A	SNP	ARSI	ENST00000328668	human	ensembl	74_37	-1	known	silent	c.180	p.H60	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSI	HGNC	ENSG00000183876				51	0	0	62	14	18.4211
ZNF300	0	genome.wustl.edu	37	5	150276528	150276528	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	150276528	150276528	C	T	SNP	ZNF300	ENST00000446148	human	ensembl	74_37	-1	known	silent	c.321	p.K107	0.993	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF300	HGNC	ENSG00000145908				36	0	0	46	6	11.5385
HAVCR1	0	genome.wustl.edu	37	5	156479604	156479604	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	156479604	156479604	G	T	SNP	HAVCR1	ENST00000425854	human	ensembl	74_37	-1	known	missense	c.441	p.S147R	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	HAVCR1	HGNC	ENSG00000113249				494	1	0.20202	564	95	14.4158
CYFIP2	0	genome.wustl.edu	37	5	156721849	156721849	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	156721849	156721849	T	G	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	missense	c.265	p.C89G	1.000	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163				54	0	0	58	8	12.1212
IL12B	0	genome.wustl.edu	37	5	158749469	158749469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	158749469	158749469	G	A	SNP	IL12B	ENST00000231228	human	ensembl	74_37	-1	known	missense	c.415	p.R139C	0.366	pirsf_IL-12_beta,pfam_IL-12_beta_cen-dom,superfamily_Fibronectin_type3,prints_IL-12_beta	pirsf_IL-12_beta,pfam_IL-12_beta_cen-dom,superfamily_Fibronectin_type3,smart_Ig_sub2,prints_IL-12_beta,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IL12B	HGNC	ENSG00000113302				41	0	0	72	14	16.2791
GABRG2	0	genome.wustl.edu	37	5	161495078	161495078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	161495078	161495078	G	A	SNP	GABRG2	ENST00000356592	human	ensembl	74_37	+1	known	missense	c.73	p.V25M	0.999	prints_GABBAg_rcpt,prints_GABBAg2_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327				73	0	0	99	6	5.71429
ENSG00000188002	0	genome.wustl.edu	37	5	1632899	1632899	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	1632899	1632899	G	A	SNP	ENSG00000188002	ENST00000507290	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.065	-	-	-	no_errors	RP11-43F13.1	Clone_based_vega_gene	ENSG00000188002				57	0	0	90	9	9.09091
NSD1	0	genome.wustl.edu	37	5	176721436	176721436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	176721436	176721436	C	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.7067	p.T2356M	0.000	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				81	0	0	79	10	11.236
NSD1	0	genome.wustl.edu	37	5	176721771	176721771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	176721771	176721771	C	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.7402	p.R2468W	0.006	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				71	0	0	84	11	11.5789
PFN3	0	genome.wustl.edu	37	5	176827207	176827207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	176827207	176827207	G	A	SNP	PFN3	ENST00000358571	human	ensembl	74_37	-1	known	missense	c.371	p.T124M	0.080	pfam_Profilin_eukaryotes/bac,superfamily_Profilin_eukaryotes/bac,smart_Profilin_eukaryotes/bac,prints_Profilin_chordates	pfam_Profilin_eukaryotes/bac,superfamily_Profilin_eukaryotes/bac,smart_Profilin_eukaryotes/bac,prints_Profilin_chordates	-	no_errors	PFN3	HGNC	ENSG00000196570				57	0	0	63	12	16
GRK6	0	genome.wustl.edu	37	5	176868759	176868759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	176868759	176868759	G	A	SNP	GRK6	ENST00000355472	human	ensembl	74_37	+1	known	missense	c.1699	p.D567N	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK6	HGNC	ENSG00000198055				93	0	0	137	22	13.8365
RASGEF1C	0	genome.wustl.edu	37	5	179545688	179545688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	179545688	179545688	G	A	SNP	RASGEF1C	ENST00000361132	human	ensembl	74_37	-1	known	missense	c.1004	p.T335M	0.984	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090				106	0	0	113	22	16.2963
RASGEF1C	0	genome.wustl.edu	37	5	179563481	179563481	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	179563481	179563481	T	C	SNP	RASGEF1C	ENST00000361132	human	ensembl	74_37	-1	known	missense	c.335	p.Q112R	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090				10	0	0	12	3	20
FLT4	0	genome.wustl.edu	37	5	180048230	180048230	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	180048230	180048230	C	T	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	silent	c.2043	p.T681	0.987	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				64	0	0	88	9	9.27835
PRDM9	0	genome.wustl.edu	37	5	23521189	23521189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	23521189	23521189	G	A	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.409	p.A137T	0.000	NULL	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				74	0	0	94	43	31.3869
TARS	0	genome.wustl.edu	37	5	33459936	33459936	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	33459936	33459936	C	T	SNP	TARS	ENST00000265112	human	ensembl	74_37	+1	known	missense	c.1220	p.A407V	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS	HGNC	ENSG00000113407				121	0	0	102	66	39.2857
TTC23L	0	genome.wustl.edu	37	5	34867166	34867166	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	34867166	34867166	T	G	SNP	TTC23L	ENST00000505624	human	ensembl	74_37	+1	known	missense	c.832	p.L278V	0.981	NULL	NULL	-	no_errors	TTC23L	HGNC	ENSG00000205838				25	0	0	28	6	17.6471
IRX1	0	genome.wustl.edu	37	5	3599882	3599882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	3599882	3599882	G	A	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.820	p.V274I	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				30	0	0	23	3	11.5385
NUP155	0	genome.wustl.edu	37	5	37294516	37294516	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	37294516	37294516	A	G	SNP	NUP155	ENST00000231498	human	ensembl	74_37	-1	known	missense	c.3845	p.V1282A	1.000	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569				29	0	0	74	7	8.64198
LIFR	0	genome.wustl.edu	37	5	38502900	38502900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	38502900	38502900	C	T	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	missense	c.1439	p.R480Q	0.992	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594				16	0	0	22	7	24.1379
OXCT1	0	genome.wustl.edu	37	5	41807470	41807470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	41807470	41807470	C	T	SNP	OXCT1	ENST00000196371	human	ensembl	74_37	-1	known	missense	c.803	p.R268H	1.000	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_A	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720				50	0	0	88	8	8.33333
ZNF131	0	genome.wustl.edu	37	5	43161649	43161649	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	43161649	43161649	G	T	SNP	ZNF131	ENST00000399534	human	ensembl	74_37	+1	known	missense	c.670	p.G224C	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262				55	0	0	111	16	12.5984
SLC9A3	0	genome.wustl.edu	37	5	482225	482225	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	482225	482225	G	A	SNP	SLC9A3	ENST00000264938	human	ensembl	74_37	-1	known	silent	c.1404	p.S468	0.329	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_dom,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230				28	0	0	44	7	13.7255
ADAMTS16	0	genome.wustl.edu	37	5	5239385	5239385	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	5239385	5239385	A	G	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.2276	p.N759S	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				138	0	0	178	22	11
SNX18	0	genome.wustl.edu	37	5	53814787	53814787	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	53814787	53814787	G	A	SNP	SNX18	ENST00000326277	human	ensembl	74_37	+1	known	silent	c.1005	p.L335	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pirsf_Snx9,pfscan_Phox	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX18	HGNC	ENSG00000178996				62	0	0	57	9	13.6364
SGTB	0	genome.wustl.edu	37	5	65016588	65016588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	65016588	65016588	C	T	SNP	SGTB	ENST00000381007	human	ensembl	74_37	-1	known	missense	c.47	p.R16Q	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SGTB	HGNC	ENSG00000197860				51	0	0	83	13	13.5417
CMYA5	0	genome.wustl.edu	37	5	79025878	79025878	+	Silent	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	79025878	79025878	T	G	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.1290	p.A430	0.006	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				118	0	0	84	18	17.6471
CMYA5	0	genome.wustl.edu	37	5	79027433	79027433	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	79027433	79027433	T	C	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.2845	p.S949P	0.994	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				62	0	0	104	24	18.75
CMYA5	0	genome.wustl.edu	37	5	79029547	79029547	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	79029547	79029547	T	C	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.4959	p.G1653	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				85	0	0	99	16	13.913
EDIL3	0	genome.wustl.edu	37	5	83239319	83239319	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	83239319	83239319	T	C	SNP	EDIL3	ENST00000296591	human	ensembl	74_37	-1	known	silent	c.1362	p.R454	0.983	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_Galactose-bd-like,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	EDIL3	HGNC	ENSG00000164176				73	0	0	93	20	17.6991
ZDHHC11	0	genome.wustl.edu	37	5	850499	850499	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	850499	850499	G	A	SNP	ZDHHC11	ENST00000283441	human	ensembl	74_37	-1	known	silent	c.219	p.Y73	0.004	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818				44	0	0	48	27	36
TMEM161B	0	genome.wustl.edu	37	5	87493585	87493585	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	87493585	87493585	G	A	SNP	TMEM161B	ENST00000515293	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TMEM161B	HGNC	ENSG00000164180				71	0	0	90	17	15.8879
SEMA5A	0	genome.wustl.edu	37	5	9066627	9066627	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	9066627	9066627	G	T	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	silent	c.2205	p.A735	0.992	NULL	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				164	0	0	245	30	10.9091
ERAP2	0	genome.wustl.edu	37	5	96232522	96232522	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	96232522	96232522	C	T	SNP	ERAP2	ENST00000437043	human	ensembl	74_37	+1	known	silent	c.1458	p.S486	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP2	HGNC	ENSG00000164308				73	0	0	120	17	12.4088
ZNF259P1	0	genome.wustl.edu	37	6	109107993	109107993	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	109107993	109107993	C	T	SNP	ZNF259P1	ENST00000572422	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	ZNF259P1	HGNC	ENSG00000219565				72	0	0	95	16	14.4144
ELOVL2	0	genome.wustl.edu	37	6	10990652	10990652	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	10990652	10990652	T	C	SNP	ELOVL2	ENST00000354666	human	ensembl	74_37	-1	known	missense	c.529	p.S177G	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL2	HGNC	ENSG00000197977				54	0	0	100	8	7.40741
GPR6	0	genome.wustl.edu	37	6	110301082	110301082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	110301082	110301082	C	T	SNP	GPR6	ENST00000414000	human	ensembl	74_37	+1	known	missense	c.812	p.A271V	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR_3/6/12_orphan	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR6,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn	-	no_errors	GPR6	HGNC	ENSG00000146360				67	0	0	70	9	11.3924
KIAA1919	0	genome.wustl.edu	37	6	111588192	111588192	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	111588192	111588192	C	T	SNP	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	missense	c.1427	p.T476M	0.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214				84	0	0	135	21	13.4615
REV3L	0	genome.wustl.edu	37	6	111672877	111672877	+	Splice_Site	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	111672877	111672877	A	G	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	splice_site	c.7300+2	e19+2	1.000	-	-	-	no_errors	REV3L	HGNC	ENSG00000009413				25	0	0	50	5	9.09091
COL10A1	0	genome.wustl.edu	37	6	116442885	116442885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	116442885	116442885	C	T	SNP	COL10A1	ENST00000243222	human	ensembl	74_37	-1	known	missense	c.394	p.A132T	0.983	pfam_Collagen	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL10A1	HGNC	ENSG00000123500				49	0	0	53	8	13.1148
RSPH4A	0	genome.wustl.edu	37	6	116943975	116943975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	116943975	116943975	G	A	SNP	RSPH4A	ENST00000229554	human	ensembl	74_37	+1	known	missense	c.731	p.R244H	1.000	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834				67	0	0	127	17	11.8056
ZUFSP	0	genome.wustl.edu	37	6	116968721	116968721	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	116968721	116968721	G	A	SNP	ZUFSP	ENST00000368576	human	ensembl	74_37	-1	known	missense	c.1369	p.R457C	1.000	pfam_Peptidase_C78_UfSP1/2	pfam_Peptidase_C78_UfSP1/2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZUFSP	HGNC	ENSG00000153975				51	0	0	64	14	17.9487
BCLAF1	0	genome.wustl.edu	37	6	136599103	136599103	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	136599103	136599103	C	T	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.916	p.A306T	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				88	0	0	118	12	9.23077
NMBR	0	genome.wustl.edu	37	6	142409697	142409697	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	142409697	142409697	C	T	SNP	NMBR	ENST00000258042	human	ensembl	74_37	-1	known	silent	c.99	p.S33	0.001	prints_NeuroB_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NeuroB_rcpt,prints_Bombsn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NMBR	HGNC	ENSG00000135577				57	0	0	47	8	14.5455
PLEKHG1	0	genome.wustl.edu	37	6	151116993	151116993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	151116993	151116993	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	missense	c.584	p.S195N	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				91	0	0	136	25	15.528
CCDC170	0	genome.wustl.edu	37	6	151939223	151939223	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	151939223	151939223	A	G	SNP	CCDC170	ENST00000367290	human	ensembl	74_37	+1	known	missense	c.2110	p.K704E	0.995	NULL	superfamily_Prefoldin,superfamily_Smac_DIABLO-like	-	no_errors	CCDC170	HGNC	ENSG00000120262				95	0	0	79	26	24.7619
SYNE1	0	genome.wustl.edu	37	6	152655285	152655285	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	152655285	152655285	A	C	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.12652	p.W4218G	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				165	0	0	255	47	15.5629
MTRF1L	0	genome.wustl.edu	37	6	153311082	153311082	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	153311082	153311082	T	C	SNP	MTRF1L	ENST00000367233	human	ensembl	74_37	-1	known	missense	c.1091	p.K364R	0.998	NULL	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1L	HGNC	ENSG00000112031				60	0	0	118	11	8.52713
SYNJ2	0	genome.wustl.edu	37	6	158487477	158487477	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	158487477	158487477	G	A	SNP	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	silent	c.1527	p.V509	1.000	superfamily_Endo/exonuclease/phosphatase	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				86	0	0	87	13	13
TULP4	0	genome.wustl.edu	37	6	158925097	158925097	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	158925097	158925097	G	T	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	missense	c.4402	p.A1468S	1.000	pfam_Tubby_C,superfamily_Tubby_C-like	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				27	0	0	12	5	29.4118
TMEM181	0	genome.wustl.edu	37	6	159028323	159028323	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	159028323	159028323	C	T	SNP	TMEM181	ENST00000367090	human	ensembl	74_37	+1	known	silent	c.1032	p.G344	1.000	NULL	NULL	-	no_errors	TMEM181	HGNC	ENSG00000146433				56	0	0	84	14	14.2857
SLC22A3	0	genome.wustl.edu	37	6	160831880	160831880	+	Splice_Site	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	160831880	160831880	T	C	SNP	SLC22A3	ENST00000392145	human	ensembl	74_37	+1	known	splice_site	c.975+2	e5+2	0.997	-	-	-	no_errors	SLC22A3	HGNC	ENSG00000146477				32	0	0	36	7	16.2791
MAP3K4	0	genome.wustl.edu	37	6	161470750	161470750	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	161470750	161470750	C	T	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	silent	c.1446	p.F482	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				113	0	0	119	22	15.6028
GPLD1	0	genome.wustl.edu	37	6	24437410	24437410	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	24437410	24437410	T	G	SNP	GPLD1	ENST00000230036	human	ensembl	74_37	-1	known	missense	c.2128	p.S710R	1.000	NULL	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293				149	0	0	136	22	13.9241
GPLD1	0	genome.wustl.edu	37	6	24445781	24445781	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	24445781	24445781	A	G	SNP	GPLD1	ENST00000230036	human	ensembl	74_37	-1	known	silent	c.2013	p.P671	0.025	prints_Gprt_PLipase_D	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293				50	0	0	69	15	17.8571
BTN3A2	0	genome.wustl.edu	37	6	26370798	26370798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	26370798	26370798	G	A	SNP	BTN3A2	ENST00000356386	human	ensembl	74_37	+1	known	missense	c.682	p.G228S	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	BTN3A2	HGNC	ENSG00000186470				179	0	0	152	43	22.0513
HLA-L	0	genome.wustl.edu	37	6	30227640	30227640	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	30227640	30227640	G	A	SNP	HLA-L	ENST00000482052	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HLA-L	HGNC	ENSG00000243753				43	0	0	24	4	14.2857
VARS2	0	genome.wustl.edu	37	6	30883933	30883933	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	30883933	30883933	T	C	SNP	VARS2	ENST00000541562	human	ensembl	74_37	+1	known	missense	c.668	p.V223A	1.000	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS2	HGNC	ENSG00000137411				97	0	0	110	17	13.3858
NELFE	0	genome.wustl.edu	37	6	31922410	31922410	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	31922410	31922410	G	A	SNP	NELFE	ENST00000375429	human	ensembl	74_37	-1	known	missense	c.664	p.R222W	0.003	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NELFE	HGNC	ENSG00000204356				43	0	0	35	7	16.6667
PBX2	0	genome.wustl.edu	37	6	32157508	32157508	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	32157508	32157508	G	A	SNP	PBX2	ENST00000375050	human	ensembl	74_37	-1	known	missense	c.185	p.T62I	1.000	pfam_PBX	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX2	HGNC	ENSG00000204304				61	0	0	75	19	20.2128
B3GALT4	0	genome.wustl.edu	37	6	33245588	33245588	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	33245588	33245588	A	G	SNP	B3GALT4	ENST00000451237	human	ensembl	74_37	+1	known	missense	c.392	p.E131G	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT4	HGNC	ENSG00000235863				178	0	0	190	32	14.4144
SYNGAP1	0	genome.wustl.edu	37	6	33409508	33409508	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	33409508	33409508	C	T	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	nonsense	c.2266	p.Q756*	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				69	0	0	66	14	17.5
PPARD	0	genome.wustl.edu	37	6	35392429	35392429	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	35392429	35392429	G	A	SNP	PPARD	ENST00000311565	human	ensembl	74_37	+1	known	silent	c.951	p.L317	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_1Cnucl_rcpt_B,prints_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A	-	no_errors	PPARD	HGNC	ENSG00000112033				45	0	0	55	10	15.3846
CDKN1A	0	genome.wustl.edu	37	6	36651917	36651917	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	36651917	36651917	C	T	SNP	CDKN1A	ENST00000448526	human	ensembl	74_37	+1	known	silent	c.141	p.C47	0.000	NULL	pfam_CDI	-	no_errors	CDKN1A	HGNC	ENSG00000124762				68	0	0	52	8	13.3333
KCNK5	0	genome.wustl.edu	37	6	39158873	39158873	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	39158873	39158873	G	A	SNP	KCNK5	ENST00000359534	human	ensembl	74_37	-1	known	silent	c.1293	p.D431	0.044	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK5	HGNC	ENSG00000164626				62	0	0	49	11	18.3333
USP49	0	genome.wustl.edu	37	6	41774562	41774562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	41774562	41774562	C	T	SNP	USP49	ENST00000373009	human	ensembl	74_37	-1	known	missense	c.160	p.A54T	1.000	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP49	HGNC	ENSG00000164663				231	0	0	225	41	15.4135
CUL7	0	genome.wustl.edu	37	6	43017368	43017368	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	43017368	43017368	G	A	SNP	CUL7	ENST00000535468	human	ensembl	74_37	-1	known	silent	c.1854	p.A618	0.230	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090				100	0	0	112	23	17.037
DNPH1	0	genome.wustl.edu	37	6	43194124	43194124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	43194124	43194124	G	A	SNP	DNPH1	ENST00000230431	human	ensembl	74_37	-1	known	missense	c.206	p.A69V	0.667	pfam_Nucleoside_deoxyribTrfase	pfam_Nucleoside_deoxyribTrfase	-	no_errors	DNPH1	HGNC	ENSG00000112667				33	0	0	34	10	22.7273
DLK2	0	genome.wustl.edu	37	6	43418891	43418891	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	43418891	43418891	T	A	SNP	DLK2	ENST00000357338	human	ensembl	74_37	-1	known	missense	c.538	p.M180L	1.000	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DLK2	HGNC	ENSG00000171462				71	0	0	55	12	17.9104
SLC35B2	0	genome.wustl.edu	37	6	44224191	44224191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	44224191	44224191	C	T	SNP	SLC35B2	ENST00000393812	human	ensembl	74_37	-1	known	missense	c.248	p.G83D	1.000	NULL	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593				137	0	0	101	23	18.5484
MEP1A	0	genome.wustl.edu	37	6	46797161	46797161	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	46797161	46797161	C	T	SNP	MEP1A	ENST00000230588	human	ensembl	74_37	+1	known	missense	c.997	p.R333W	0.997	pirsf_Pept_M12A_Meprin,pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EG-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl_sf,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818				174	0	0	215	41	16.0156
MUT	0	genome.wustl.edu	37	6	49425419	49425419	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	49425419	49425419	A	T	SNP	MUT	ENST00000274813	human	ensembl	74_37	-1	known	missense	c.738	p.F246L	0.995	pfam_MeMalonylCoA_mutase_a/b_cat,superfamily_Cbl-dep_enz_cat,tigrfam_MMCoA_mutase_a_cat	pfam_MeMalonylCoA_mutase_a/b_cat,pfam_Cobalamin-bd,superfamily_Cbl-dep_enz_cat,superfamily_Cobalamin-bd,tigrfam_MMCoA_mutase_a_cat,tigrfam_Acid_CoA_mut_C	-	no_errors	MUT	HGNC	ENSG00000146085				33	0	0	38	8	17.3913
DEFB114	0	genome.wustl.edu	37	6	49928136	49928136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	49928136	49928136	C	T	SNP	DEFB114	ENST00000322066	human	ensembl	74_37	-1	known	missense	c.79	p.D27N	0.014	NULL	NULL	-	no_errors	DEFB114	HGNC	ENSG00000177684				46	0	0	76	12	13.6364
PKHD1	0	genome.wustl.edu	37	6	51612919	51612919	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	51612919	51612919	C	T	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	silent	c.9495	p.V3165	0.839	superfamily_Pectin_lyase_fold/virulence	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				212	0	0	308	34	9.94152
PAQR8	0	genome.wustl.edu	37	6	52268246	52268246	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	52268246	52268246	G	A	SNP	PAQR8	ENST00000360726	human	ensembl	74_37	+1	known	missense	c.235	p.V79I	1.000	pfam_HlyIII-related	pfam_HlyIII-related,superfamily_C-type_lectin_fold	-	no_errors	PAQR8	HGNC	ENSG00000170915				122	0	0	168	11	6.14525
BMP5	0	genome.wustl.edu	37	6	55638912	55638912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	55638912	55638912	C	T	SNP	BMP5	ENST00000370830	human	ensembl	74_37	-1	known	missense	c.962	p.R321Q	1.000	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175				127	0	0	144	22	13.253
KHDRBS2	0	genome.wustl.edu	37	6	62687976	62687976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	62687976	62687976	C	T	SNP	KHDRBS2	ENST00000281156	human	ensembl	74_37	-1	known	missense	c.478	p.V160I	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232				88	0	0	111	9	7.5
HUS1B	0	genome.wustl.edu	37	6	656447	656447	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	656447	656447	C	T	SNP	HUS1B	ENST00000380907	human	ensembl	74_37	-1	known	silent	c.498	p.R166	0.439	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	-	no_errors	HUS1B	HGNC	ENSG00000188996				220	0	0	243	58	19.2691
EYS	0	genome.wustl.edu	37	6	66204602	66204602	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	66204602	66204602	A	G	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	silent	c.702	p.N234	0.000	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107				13	0	0	15	7	31.8182
COL9A1	0	genome.wustl.edu	37	6	71009815	71009815	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	71009815	71009815	A	G	SNP	COL9A1	ENST00000357250	human	ensembl	74_37	-1	known	missense	c.230	p.V77A	0.863	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280				51	0	0	66	9	12
OGFRL1	0	genome.wustl.edu	37	6	71998699	71998699	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	71998699	71998699	C	T	SNP	OGFRL1	ENST00000370435	human	ensembl	74_37	+1	known	silent	c.60	p.D20	1.000	NULL	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900				14	0	0	23	3	11.5385
RREB1	0	genome.wustl.edu	37	6	7230996	7230996	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	7230996	7230996	C	T	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	silent	c.2664	p.P888	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				90	0	0	105	19	15.3226
DSP	0	genome.wustl.edu	37	6	7559542	7559542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	7559542	7559542	G	A	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	missense	c.506	p.G169D	0.654	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				180	0	0	209	29	12.1849
IMPG1	0	genome.wustl.edu	37	6	76744488	76744488	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	76744488	76744488	T	C	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	silent	c.318	p.V106	0.602	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG1	HGNC	ENSG00000112706				68	0	0	86	9	9.47368
TPBG	0	genome.wustl.edu	37	6	83074849	83074849	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	83074849	83074849	G	A	SNP	TPBG	ENST00000369750	human	ensembl	74_37	+1	known	silent	c.171	p.P57	0.020	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	TPBG	HGNC	ENSG00000146242				29	0	0	21	7	25
DOPEY1	0	genome.wustl.edu	37	6	83847420	83847420	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	83847420	83847420	C	T	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.3659	p.S1220F	0.942	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				92	0	0	145	17	10.4938
MDN1	0	genome.wustl.edu	37	6	90405413	90405413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	90405413	90405413	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.9682	p.G3228S	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				104	0	0	99	13	11.6071
MDN1	0	genome.wustl.edu	37	6	90442374	90442374	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	90442374	90442374	A	G	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.4844	p.M1615T	1.000	superfamily_P-loop_NTPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				123	0	0	181	22	10.8374
CASP8AP2	0	genome.wustl.edu	37	6	90575882	90575882	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	90575882	90575882	G	A	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.130	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				17	0	0	28	7	20
CASP8AP2	0	genome.wustl.edu	37	6	90575909	90575909	+	RNA	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	90575909	90575909	A	C	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				20	0	0	24	3	11.1111
CASP8AP2	0	genome.wustl.edu	37	6	90577011	90577011	+	RNA	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	90577011	90577011	T	C	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				58	0	0	49	14	22.2222
GPR63	0	genome.wustl.edu	37	6	97247002	97247002	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	97247002	97247002	A	G	SNP	GPR63	ENST00000229955	human	ensembl	74_37	-1	known	silent	c.606	p.S202	0.958	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR63	HGNC	ENSG00000112218				121	0	0	97	22	18.4874
POU3F2	0	genome.wustl.edu	37	6	99283474	99283474	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	99283474	99283474	C	T	SNP	POU3F2	ENST00000328345	human	ensembl	74_37	+1	known	missense	c.725	p.P242L	1.000	pirsf_Transcription_factor_POU	pirsf_Transcription_factor_POU,pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F2	HGNC	ENSG00000184486				101	0	0	77	12	13.4831
FAXC	0	genome.wustl.edu	37	6	99797031	99797031	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	99797031	99797031	G	T	SNP	FAXC	ENST00000389677	human	ensembl	74_37	-1	known	missense	c.218	p.A73D	1.000	NULL	superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	FAXC	HGNC	ENSG00000146267				125	0	0	114	22	16.1765
FBXO24	0	genome.wustl.edu	37	7	100198185	100198185	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	100198185	100198185	C	A	SNP	FBXO24	ENST00000427939	human	ensembl	74_37	+1	known	missense	c.1520	p.A507D	1.000	superfamily_RCC1/BLIP-II	pfam_F-box_dom,pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336				170	0	0	182	24	11.6505
PSMC2	0	genome.wustl.edu	37	7	103004631	103004631	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	103004631	103004631	C	T	SNP	PSMC2	ENST00000292644	human	ensembl	74_37	+1	known	silent	c.633	p.G211	0.921	superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC2	HGNC	ENSG00000161057				75	0	0	117	20	14.5985
RELN	0	genome.wustl.edu	37	7	103290771	103290771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	103290771	103290771	C	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.1952	p.R651H	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				84	0	0	114	29	20.2797
NRCAM	0	genome.wustl.edu	37	7	107838532	107838532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	107838532	107838532	C	T	SNP	NRCAM	ENST00000379028	human	ensembl	74_37	-1	known	missense	c.1219	p.D407N	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NRCAM	HGNC	ENSG00000091129				43	0	0	50	8	13.7931
CFTR	0	genome.wustl.edu	37	7	117182086	117182086	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	117182086	117182086	A	G	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	missense	c.1133	p.Q378R	1.000	superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626				27	0	0	35	5	12.5
GRM8	0	genome.wustl.edu	37	7	126086333	126086333	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	126086333	126086333	T	A	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	missense	c.2524	p.I842F	1.000	pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603				71	0	0	104	18	14.7541
LRRC4	0	genome.wustl.edu	37	7	127669905	127669905	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	127669905	127669905	G	A	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	silent	c.789	p.D263	0.994	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				93	0	0	94	14	12.963
C7orf49	0	genome.wustl.edu	37	7	134851435	134851435	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	134851435	134851435	G	T	SNP	C7orf49	ENST00000393114	human	ensembl	74_37	-1	known	silent	c.402	p.A134	0.003	NULL	NULL	-	no_errors	C7orf49	HGNC	ENSG00000122783				109	0	0	145	32	18.0791
KIAA1549	0	genome.wustl.edu	37	7	138601984	138601984	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	138601984	138601984	C	T	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	silent	c.2388	p.T796	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				52	0	0	59	13	18.0556
BRAF	0	genome.wustl.edu	37	7	140534520	140534520	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	140534520	140534520	T	C	SNP	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	silent	c.393	p.L131	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				88	0	0	122	32	20.7792
TRPV6	0	genome.wustl.edu	37	7	142569632	142569632	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	142569632	142569632	A	C	SNP	TRPV6	ENST00000359396	human	ensembl	74_37	-1	known	missense	c.2006	p.L669R	0.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125				110	0	0	95	10	9.52381
EPHA1	0	genome.wustl.edu	37	7	143094660	143094660	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	143094660	143094660	C	T	SNP	EPHA1	ENST00000275815	human	ensembl	74_37	-1	known	missense	c.1706	p.R569Q	0.980	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904				96	0	0	113	12	9.6
OR2A7	0	genome.wustl.edu	37	7	143956655	143956655	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	143956655	143956655	G	A	SNP	OR2A7	ENST00000493325	human	ensembl	74_37	-1	known	nonsense	c.67	p.Q23*	0.003	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A7	HGNC	ENSG00000243896				176	0	0	216	17	7.29614
CNTNAP2	0	genome.wustl.edu	37	7	146741142	146741142	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	146741142	146741142	T	C	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	silent	c.546	p.S182	0.942	superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				100	0	0	158	50	24.0385
ZNF783	0	genome.wustl.edu	37	7	148975608	148975608	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	148975608	148975608	G	A	SNP	ZNF783	ENST00000434415	human	ensembl	74_37	+1	known	silent	c.792	p.G264	0.008	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF783	HGNC	ENSG00000204946				50	0	0	42	5	10.6383
ZNF746	0	genome.wustl.edu	37	7	149171850	149171850	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	149171850	149171850	C	T	SNP	ZNF746	ENST00000458143	human	ensembl	74_37	-1	known	silent	c.1563	p.T521	0.009	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_DUF3669_Znf,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF746	HGNC	ENSG00000181220				20	0	0	16	3	15.7895
ZNF862	0	genome.wustl.edu	37	7	149561323	149561323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	149561323	149561323	G	A	SNP	ZNF862	ENST00000223210	human	ensembl	74_37	+1	known	missense	c.3460	p.E1154K	0.000	NULL	pfam_Krueppel-associated_box,pfam_HATC_dom_C,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479				11	0	0	22	5	18.5185
WDR86	0	genome.wustl.edu	37	7	151082222	151082222	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	151082222	151082222	T	C	SNP	WDR86	ENST00000469830	human	ensembl	74_37	-1	putative	missense	c.878	p.H293R	0.112	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR86	HGNC	ENSG00000187260				54	0	0	47	12	20.339
GALNT11	0	genome.wustl.edu	37	7	151791543	151791543	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	151791543	151791543	C	T	SNP	GALNT11	ENST00000320311	human	ensembl	74_37	+1	known	silent	c.231	p.D77	0.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234				118	0	0	155	19	10.9195
KMT2C	0	genome.wustl.edu	37	7	152008901	152008901	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	152008901	152008901	C	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.721	p.A241S	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				67	0	0	103	21	16.9355
RBM33	0	genome.wustl.edu	37	7	155499646	155499646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	155499646	155499646	C	T	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	missense	c.832	p.R278W	0.991	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				23	0	0	28	3	9.67742
RBM33	0	genome.wustl.edu	37	7	155534589	155534589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	155534589	155534589	G	A	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	missense	c.2126	p.R709H	1.000	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				223	0	0	199	41	17.0833
MNX1	0	genome.wustl.edu	37	7	156798351	156798351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	156798351	156798351	C	T	SNP	MNX1	ENST00000252971	human	ensembl	74_37	-1	known	missense	c.1069	p.E357K	0.969	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MNX1	HGNC	ENSG00000130675				45	0	0	49	16	24.6154
UBE3C	0	genome.wustl.edu	37	7	157046707	157046707	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	157046707	157046707	G	A	SNP	UBE3C	ENST00000348165	human	ensembl	74_37	+1	known	silent	c.2754	p.A918	0.236	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335				76	0	0	70	6	7.89474
MEOX2	0	genome.wustl.edu	37	7	15725539	15725539	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	15725539	15725539	G	T	SNP	MEOX2	ENST00000262041	human	ensembl	74_37	-1	known	missense	c.489	p.S163R	0.888	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MEOX2	HGNC	ENSG00000106511				263	0	0	301	65	17.7596
NCAPG2	0	genome.wustl.edu	37	7	158443607	158443607	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	158443607	158443607	G	A	SNP	NCAPG2	ENST00000409339	human	ensembl	74_37	-1	known	missense	c.2992	p.H998Y	1.000	NULL	pfam_Condensin2_G2,superfamily_ARM-type_fold	-	no_errors	NCAPG2	HGNC	ENSG00000146918				92	0	0	136	27	16.5644
NCAPG2	0	genome.wustl.edu	37	7	158447310	158447310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	158447310	158447310	C	T	SNP	NCAPG2	ENST00000409339	human	ensembl	74_37	-1	known	missense	c.2723	p.R908Q	0.002	NULL	pfam_Condensin2_G2,superfamily_ARM-type_fold	-	no_errors	NCAPG2	HGNC	ENSG00000146918				137	0	0	178	45	20.1794
TSPAN13	0	genome.wustl.edu	37	7	16817465	16817465	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	16817465	16817465	C	T	SNP	TSPAN13	ENST00000262067	human	ensembl	74_37	+1	known	nonsense	c.355	p.R119*	0.604	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN13	HGNC	ENSG00000106537				80	0	0	109	20	15.5039
MACC1	0	genome.wustl.edu	37	7	20199428	20199428	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	20199428	20199428	G	A	SNP	MACC1	ENST00000332878	human	ensembl	74_37	-1	known	missense	c.556	p.R186C	1.000	NULL	pfam_SH3_2,superfamily_DEATH-like_dom	-	no_errors	MACC1	HGNC	ENSG00000183742				63	0	0	85	11	11.4583
ABCB5	0	genome.wustl.edu	37	7	20782555	20782555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	20782555	20782555	G	A	SNP	ABCB5	ENST00000258738	human	ensembl	74_37	+1	known	missense	c.1745	p.R582H	0.998	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846				49	0	0	64	18	21.9512
NFE2L3	0	genome.wustl.edu	37	7	26224439	26224439	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	26224439	26224439	A	G	SNP	NFE2L3	ENST00000056233	human	ensembl	74_37	+1	known	missense	c.1121	p.N374S	0.663	NULL	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344				109	0	0	132	30	18.5185
HOXA2	0	genome.wustl.edu	37	7	27141760	27141760	+	Silent	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	27141760	27141760	T	G	SNP	HOXA2	ENST00000222718	human	ensembl	74_37	-1	known	silent	c.360	p.A120	0.927	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA2	HGNC	ENSG00000105996				16	0	0	19	5	20.8333
HOXA6	0	genome.wustl.edu	37	7	27187001	27187001	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	27187001	27187001	A	G	SNP	HOXA6	ENST00000222728	human	ensembl	74_37	-1	known	missense	c.368	p.L123P	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA6	HGNC	ENSG00000106006				135	0	0	145	20	12.1212
JAZF1	0	genome.wustl.edu	37	7	27880399	27880399	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	27880399	27880399	G	A	SNP	JAZF1	ENST00000283928	human	ensembl	74_37	-1	known	missense	c.473	p.A158V	1.000	NULL	smart_Znf_C2H2-like	-	no_errors	JAZF1	HGNC	ENSG00000153814				172	0	0	196	33	14.4105
GARS	0	genome.wustl.edu	37	7	30651771	30651771	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	30651771	30651771	T	G	SNP	GARS	ENST00000389266	human	ensembl	74_37	+1	known	missense	c.941	p.F314C	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II,tigrfam_tRNA-synt_gly	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,prints_tRNA-synt_gly,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_tRNA-synt_gly	-	no_errors	GARS	HGNC	ENSG00000106105				107	0	0	148	23	13.4503
PDE1C	0	genome.wustl.edu	37	7	31876897	31876897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	31876897	31876897	G	A	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	missense	c.1100	p.A367V	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678				45	0	0	60	5	7.69231
PDE1C	0	genome.wustl.edu	37	7	31890287	31890287	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	31890287	31890287	G	A	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	silent	c.819	p.T273	0.102	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678				69	0	0	98	17	14.7826
RP9	0	genome.wustl.edu	37	7	33136917	33136917	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	33136917	33136917	A	G	SNP	RP9	ENST00000297157	human	ensembl	74_37	-1	known	missense	c.371	p.I124T	1.000	NULL	NULL	-	no_errors	RP9	HGNC	ENSG00000164610				50	0	0	67	10	12.987
STARD3NL	0	genome.wustl.edu	37	7	38247159	38247159	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	38247159	38247159	C	T	SNP	STARD3NL	ENST00000009041	human	ensembl	74_37	+1	known	silent	c.54	p.S18	0.985	NULL	pfam_MENTAL	-	no_errors	STARD3NL	HGNC	ENSG00000010270				89	0	0	91	15	14.1509
VPS41	0	genome.wustl.edu	37	7	38816279	38816279	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	38816279	38816279	C	T	SNP	VPS41	ENST00000310301	human	ensembl	74_37	-1	known	silent	c.882	p.T294	1.000	pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715				30	0	0	47	3	6
POLM	0	genome.wustl.edu	37	7	44120340	44120340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	44120340	44120340	G	A	SNP	POLM	ENST00000242248	human	ensembl	74_37	-1	known	missense	c.364	p.R122C	0.955	superfamily_BRCT_dom,pirsf_TdT/Mu	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	POLM	HGNC	ENSG00000122678				179	0	0	214	34	13.7097
ZMIZ2	0	genome.wustl.edu	37	7	44806229	44806229	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	44806229	44806229	T	C	SNP	ZMIZ2	ENST00000309315	human	ensembl	74_37	+1	known	silent	c.2622	p.S874	0.948	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515				103	0	0	92	23	20
IGFBP1	0	genome.wustl.edu	37	7	45928308	45928308	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	45928308	45928308	G	T	SNP	IGFBP1	ENST00000275525	human	ensembl	74_37	+1	known	missense	c.57	p.Q19H	0.002	NULL	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP1	-	no_errors	IGFBP1	HGNC	ENSG00000146678				51	0	0	34	10	22.7273
ABCA13	0	genome.wustl.edu	37	7	48318404	48318404	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	48318404	48318404	C	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.7613	p.T2538K	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				173	0	0	260	48	15.5844
RADIL	0	genome.wustl.edu	37	7	4855941	4855941	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	4855941	4855941	C	T	SNP	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	silent	c.1884	p.V628	0.995	pfscan_Dilute	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927				36	0	0	39	7	15.2174
RADIL	0	genome.wustl.edu	37	7	4917581	4917581	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	4917581	4917581	C	T	SNP	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	missense	c.190	p.V64I	0.961	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927				38	0	0	35	7	16.6667
COBL	0	genome.wustl.edu	37	7	51096673	51096673	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	51096673	51096673	G	A	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	missense	c.2366	p.T789M	0.806	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078				64	0	0	73	17	18.8889
POM121L12	0	genome.wustl.edu	37	7	53103605	53103605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	53103605	53103605	C	T	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	missense	c.241	p.R81W	0.000	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900				63	0	0	53	6	10.1695
RSPH10B	0	genome.wustl.edu	37	7	5966162	5966162	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	5966162	5966162	A	G	SNP	RSPH10B	ENST00000337579	human	ensembl	74_37	-1	known	missense	c.2450	p.L817S	0.042	NULL	pfam_MORN,smart_MORN	-	no_errors	RSPH10B	HGNC	ENSG00000155026				84	0	0	74	20	21.2766
ZNF733P	0	genome.wustl.edu	37	7	62753101	62753101	+	RNA	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	62753101	62753101	C	A	SNP	ZNF733P	ENST00000331425	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	ZNF733P	HGNC	ENSG00000185037				69	0	0	111	19	14.6154
ZNF679	0	genome.wustl.edu	37	7	63726625	63726625	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	63726625	63726625	T	C	SNP	ZNF679	ENST00000255746	human	ensembl	74_37	+1	known	missense	c.614	p.I205T	0.496	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF679	HGNC	ENSG00000197123				13	0	0	13	3	18.75
GTF2IRD1	0	genome.wustl.edu	37	7	73961459	73961459	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	73961459	73961459	G	A	SNP	GTF2IRD1	ENST00000265755	human	ensembl	74_37	+1	known	missense	c.1759	p.V587I	0.987	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704				151	1	0.657895	177	41	18.8073
DTX2P1-UPK3BP1-PMS2P11	0	genome.wustl.edu	37	7	76633587	76633587	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	76633587	76633587	G	A	SNP	DTX2P1-UPK3BP1-PMS2P11	ENST00000579700	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DTX2P1-UPK3BP1-PMS2P11	HGNC	ENSG00000265479				75	0	0	57	9	13.6364
CCDC146	0	genome.wustl.edu	37	7	76922503	76922503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	76922503	76922503	G	A	SNP	CCDC146	ENST00000285871	human	ensembl	74_37	+1	known	missense	c.2650	p.A884T	0.966	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205				112	0	0	172	33	16.0976
MAGI2	0	genome.wustl.edu	37	7	77824201	77824201	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	77824201	77824201	A	C	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	nonsense	c.2259	p.Y753*	1.000	superfamily_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				85	0	0	136	33	19.5266
HEATR2	0	genome.wustl.edu	37	7	801405	801405	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	801405	801405	C	T	SNP	HEATR2	ENST00000297440	human	ensembl	74_37	+1	known	missense	c.1486	p.R496C	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR2	HGNC	ENSG00000164818				18	0	0	20	3	13.0435
SEMA3A	0	genome.wustl.edu	37	7	83689835	83689835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	83689835	83689835	C	T	SNP	SEMA3A	ENST00000265362	human	ensembl	74_37	-1	known	missense	c.493	p.G165S	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3A	HGNC	ENSG00000075213				114	0	0	171	28	14.0704
COL1A2	0	genome.wustl.edu	37	7	94041396	94041396	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	94041396	94041396	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.1367	p.P456L	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				11	0	0	27	3	10
TRRAP	0	genome.wustl.edu	37	7	98497363	98497363	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	98497363	98497363	T	C	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.773	p.I258T	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				57	0	0	72	18	20
PILRA	0	genome.wustl.edu	37	7	99971837	99971837	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	99971837	99971837	C	T	SNP	PILRA	ENST00000198536	human	ensembl	74_37	+1	known	nonsense	c.235	p.Q79*	0.007	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	PILRA	HGNC	ENSG00000085514				140	1	0.70922	149	29	16.2921
VPS13B	0	genome.wustl.edu	37	8	100791069	100791069	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	100791069	100791069	A	G	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.7664	p.K2555R	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				78	0	0	124	29	18.9542
KLF10	0	genome.wustl.edu	37	8	103662532	103662532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	103662532	103662532	G	A	SNP	KLF10	ENST00000285407	human	ensembl	74_37	-1	known	missense	c.1271	p.T424M	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF10	HGNC	ENSG00000155090				112	0	0	149	31	17.2222
DCAF13	0	genome.wustl.edu	37	8	104427576	104427576	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	104427576	104427576	A	C	SNP	DCAF13	ENST00000297579	human	ensembl	74_37	+1	known	missense	c.358	p.S120R	1.000	NULL	pfam_Sof1,pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				142	0	0	102	15	12.8205
PINX1	0	genome.wustl.edu	37	8	10623283	10623283	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	10623283	10623283	C	T	SNP	PINX1	ENST00000314787	human	ensembl	74_37	-1	known	silent	c.615	p.T205	0.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	PINX1	HGNC	ENSG00000254093				293	0	0	370	64	14.7465
OXR1	0	genome.wustl.edu	37	8	107691458	107691458	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	107691458	107691458	C	A	SNP	OXR1	ENST00000442977	human	ensembl	74_37	+1	known	missense	c.244	p.L82I	1.000	NULL	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830				81	0	0	101	19	15.8333
PKHD1L1	0	genome.wustl.edu	37	8	110456122	110456122	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	110456122	110456122	G	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.4782	p.W1594C	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				73	0	0	99	22	18.1818
CTSB	0	genome.wustl.edu	37	8	11710150	11710150	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	11710150	11710150	T	C	SNP	CTSB	ENST00000345125	human	ensembl	74_37	-1	known	missense	c.181	p.T61A	0.690	pfam_Propeptide_C1A	pfam_Peptidase_C1A_C,pfam_Propeptide_C1A,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSB	HGNC	ENSG00000164733				51	0	0	53	7	11.6667
TNFRSF11B	0	genome.wustl.edu	37	8	119938851	119938851	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	119938851	119938851	G	A	SNP	TNFRSF11B	ENST00000297350	human	ensembl	74_37	-1	known	silent	c.699	p.N233	0.025	pirsf_TNFR_11B,superfamily_DEATH-like_dom	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11B	HGNC	ENSG00000164761				66	0	0	92	18	16.3636
LRRC6	0	genome.wustl.edu	37	8	133673853	133673853	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	133673853	133673853	G	A	SNP	LRRC6	ENST00000250173	human	ensembl	74_37	-1	known	missense	c.31	p.R11W	0.990	NULL	superfamily_HSP20-like_chaperone,smart_U2A'_phosphoprotein32A_C,pfscan_CS_dom	-	no_errors	LRRC6	HGNC	ENSG00000129295				42	0	0	52	7	11.8644
DENND3	0	genome.wustl.edu	37	8	142190927	142190927	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	142190927	142190927	C	T	SNP	DENND3	ENST00000262585	human	ensembl	74_37	+1	known	missense	c.2678	p.A893V	0.888	superfamily_WD40_repeat_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339				94	0	0	86	16	15.6863
ZNF696	0	genome.wustl.edu	37	8	144378753	144378753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	144378753	144378753	G	A	SNP	ZNF696	ENST00000330143	human	ensembl	74_37	+1	known	missense	c.908	p.S303N	0.569	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF696	HGNC	ENSG00000185730				31	0	0	24	6	20
RHPN1	0	genome.wustl.edu	37	8	144458725	144458725	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	144458725	144458725	G	T	SNP	RHPN1	ENST00000289013	human	ensembl	74_37	+1	known	silent	c.207	p.T69	0.747	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106				32	0	0	32	7	17.9487
PLEC	0	genome.wustl.edu	37	8	144991783	144991783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	144991783	144991783	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.12617	p.R4206H	0.999	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				106	0	0	86	16	15.6863
PLEC	0	genome.wustl.edu	37	8	144991811	144991811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	144991811	144991811	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.12589	p.R4197W	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				90	0	0	80	15	15.7895
SPATC1	0	genome.wustl.edu	37	8	145095791	145095791	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	145095791	145095791	T	C	SNP	SPATC1	ENST00000377470	human	ensembl	74_37	+1	known	silent	c.1089	p.H363	0.000	NULL	NULL	-	no_errors	SPATC1	HGNC	ENSG00000186583				81	0	0	67	15	18.2927
OPLAH	0	genome.wustl.edu	37	8	145108142	145108142	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	145108142	145108142	G	A	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	silent	c.2841	p.D947	0.343	pfam_Hydantoinase_B	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				58	0	0	42	12	22.2222
EXOSC4	0	genome.wustl.edu	37	8	145135325	145135325	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	145135325	145135325	C	A	SNP	EXOSC4	ENST00000316052	human	ensembl	74_37	+1	known	missense	c.559	p.L187M	1.000	pfam_ExoRNase_PH_dom2,superfamily_ExoRNase_PH_dom2	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC4	HGNC	ENSG00000178896				126	0	0	117	18	13.3333
SLC39A4	0	genome.wustl.edu	37	8	145641416	145641416	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	145641416	145641416	C	T	SNP	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	silent	c.252	p.P84	0.000	NULL	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804				13	0	0	17	4	19.0476
GPT	0	genome.wustl.edu	37	8	145730035	145730035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	145730035	145730035	G	A	SNP	GPT	ENST00000394955	human	ensembl	74_37	+1	known	missense	c.211	p.A71T	1.000	superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GPT	HGNC	ENSG00000167701				169	0	0	151	23	13.2184
MSR1	0	genome.wustl.edu	37	8	16035397	16035397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	16035397	16035397	G	A	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	missense	c.101	p.P34L	0.000	prints_Macro_scav_rcpt	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				30	0	0	39	10	20.4082
SH2D4A	0	genome.wustl.edu	37	8	19252128	19252128	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	19252128	19252128	C	A	SNP	SH2D4A	ENST00000265807	human	ensembl	74_37	+1	known	missense	c.1340	p.P447H	0.342	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D4A	HGNC	ENSG00000104611				96	0	0	87	14	13.8614
ZNF596	0	genome.wustl.edu	37	8	195439	195439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	195439	195439	C	T	SNP	ZNF596	ENST00000308811	human	ensembl	74_37	+1	known	missense	c.592	p.R198C	0.222	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF596	HGNC	ENSG00000172748				70	0	0	96	14	12.7273
ZNF596	0	genome.wustl.edu	37	8	195650	195650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	195650	195650	G	A	SNP	ZNF596	ENST00000308811	human	ensembl	74_37	+1	known	missense	c.803	p.R268Q	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF596	HGNC	ENSG00000172748				75	0	0	112	18	13.8462
SLC18A1	0	genome.wustl.edu	37	8	20005154	20005154	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	20005154	20005154	G	A	SNP	SLC18A1	ENST00000276373	human	ensembl	74_37	-1	known	silent	c.1290	p.Y430	0.987	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565				66	0	0	44	10	18.5185
RHOBTB2	0	genome.wustl.edu	37	8	22865085	22865085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	22865085	22865085	C	T	SNP	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	missense	c.1327	p.R443C	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				161	0	0	136	25	15.528
LOXL2	0	genome.wustl.edu	37	8	23159645	23159645	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	23159645	23159645	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	silent	c.2028	p.F676	0.958	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				73	0	0	51	10	16.3934
NEFL	0	genome.wustl.edu	37	8	24813072	24813072	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	24813072	24813072	C	T	SNP	NEFL	ENST00000221169	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725				69	0	0	66	18	21.4286
SDAD1P1	0	genome.wustl.edu	37	8	26238015	26238015	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	26238015	26238015	G	A	SNP	SDAD1P1	ENST00000519902	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDAD1P1	HGNC	ENSG00000228451				42	0	0	82	12	12.766
CHRNA2	0	genome.wustl.edu	37	8	27320707	27320707	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	27320707	27320707	T	A	SNP	CHRNA2	ENST00000407991	human	ensembl	74_37	-1	known	missense	c.1253	p.E418V	0.313	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA2	HGNC	ENSG00000120903				106	0	0	113	20	15.0376
ESCO2	0	genome.wustl.edu	37	8	27657064	27657064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	27657064	27657064	C	T	SNP	ESCO2	ENST00000305188	human	ensembl	74_37	+1	known	missense	c.1504	p.R502C	1.000	NULL	NULL	-	no_errors	ESCO2	HGNC	ENSG00000171320				104	0	0	132	29	18.0124
GSR	0	genome.wustl.edu	37	8	30541660	30541660	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	30541660	30541660	G	A	SNP	GSR	ENST00000221130	human	ensembl	74_37	-1	known	silent	c.1098	p.N366	0.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Glutathione_Rdtase_euk/bac	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Glutathione_Rdtase_euk/bac	-	no_errors	GSR	HGNC	ENSG00000104687				177	0	0	239	51	17.5862
NRG1	0	genome.wustl.edu	37	8	32600278	32600278	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	32600278	32600278	C	G	SNP	NRG1	ENST00000520502	human	ensembl	74_37	+1	known	missense	c.883	p.P295A	1.000	NULL	smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	NRG1	HGNC	ENSG00000157168				249	0	0	315	44	12.2563
UNC5D	0	genome.wustl.edu	37	8	35583730	35583730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	35583730	35583730	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.1364	p.S455N	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				88	0	0	85	16	15.8416
NKX6-3	0	genome.wustl.edu	37	8	41504832	41504832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	41504832	41504832	C	T	SNP	NKX6-3	ENST00000524115	human	ensembl	74_37	-1	known	missense	c.43	p.G15R	0.028	NULL	superfamily_Homeodomain-like	-	no_errors	NKX6-3	HGNC	ENSG00000165066				20	0	0	22	3	12
KAT6A	0	genome.wustl.edu	37	8	41791029	41791029	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	41791029	41791029	T	A	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.4709	p.D1570V	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				89	0	0	96	20	17.2414
SNTG1	0	genome.wustl.edu	37	8	51617256	51617256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	51617256	51617256	G	A	SNP	SNTG1	ENST00000518864	human	ensembl	74_37	+1	known	missense	c.1135	p.A379T	0.160	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481				63	0	0	96	16	14.2857
PXDNL	0	genome.wustl.edu	37	8	52321999	52321999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	52321999	52321999	C	T	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2185	p.A729T	0.157	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				50	0	0	51	9	15
OPRK1	0	genome.wustl.edu	37	8	54147653	54147653	+	Silent	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	54147653	54147653	T	G	SNP	OPRK1	ENST00000265572	human	ensembl	74_37	-1	known	silent	c.276	p.T92	0.218	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Opioid_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OPRK1	HGNC	ENSG00000082556				97	0	0	140	14	9.09091
TCEA1	0	genome.wustl.edu	37	8	54900718	54900718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	54900718	54900718	C	T	SNP	TCEA1	ENST00000521604	human	ensembl	74_37	-1	known	missense	c.422	p.R141Q	0.998	pfam_TFIIS_cen_dom,superfamily_TFIIS_cen_dom,smart_TFS2M,pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_Znf_TFIIS,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA1	HGNC	ENSG00000187735				30	0	0	25	7	21.875
CLVS1	0	genome.wustl.edu	37	8	62371044	62371044	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	62371044	62371044	A	G	SNP	CLVS1	ENST00000325897	human	ensembl	74_37	+1	known	missense	c.920	p.H307R	0.991	NULL	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	CLVS1	HGNC	ENSG00000177182				35	0	0	65	15	18.75
ERICH1	0	genome.wustl.edu	37	8	623991	623991	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	623991	623991	T	C	SNP	ERICH1	ENST00000262109	human	ensembl	74_37	-1	known	missense	c.361	p.K121E	0.990	NULL	NULL	-	no_errors	ERICH1	HGNC	ENSG00000104714				41	0	0	64	18	21.9512
BHLHE22	0	genome.wustl.edu	37	8	65494426	65494426	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	65494426	65494426	C	T	SNP	BHLHE22	ENST00000321870	human	ensembl	74_37	+1	known	missense	c.1079	p.P360L	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE22	HGNC	ENSG00000180828				26	0	0	30	4	11.7647
ARFGEF1	0	genome.wustl.edu	37	8	68140340	68140340	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	68140340	68140340	A	G	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	missense	c.3449	p.V1150A	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				74	0	0	103	24	18.8976
KCNB2	0	genome.wustl.edu	37	8	73480260	73480260	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	73480260	73480260	T	C	SNP	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	silent	c.291	p.T97	0.910	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				84	0	0	104	12	10.3448
SGK223	0	genome.wustl.edu	37	8	8235193	8235193	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	8235193	8235193	G	A	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	silent	c.726	p.C242	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				85	0	0	75	17	18.4783
LRRCC1	0	genome.wustl.edu	37	8	86019623	86019623	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	86019623	86019623	A	C	SNP	LRRCC1	ENST00000360375	human	ensembl	74_37	+1	known	missense	c.93	p.K31N	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739				82	0	0	100	20	16.6667
ESRP1	0	genome.wustl.edu	37	8	95658510	95658510	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	95658510	95658510	T	C	SNP	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	missense	c.490	p.Y164H	0.992	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				93	0	0	122	18	12.8571
ABCA1	0	genome.wustl.edu	37	9	107548643	107548643	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	107548643	107548643	T	C	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	missense	c.6337	p.R2113G	0.988	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				96	0	0	168	34	16.8317
PALM2-AKAP2	0	genome.wustl.edu	37	9	112918719	112918719	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	112918719	112918719	T	G	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	missense	c.3116	p.L1039R	1.000	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				111	0	0	115	19	14.1791
C9orf91	0	genome.wustl.edu	37	9	117379467	117379467	+	RNA	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	117379467	117379467	C	T	SNP	C9orf91	ENST00000471206	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf91	HGNC	ENSG00000157693				61	0	0	73	18	19.7802
TNC	0	genome.wustl.edu	37	9	117848521	117848521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	117848521	117848521	G	A	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.1489	p.R497W	0.791	smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				246	0	0	207	31	13.0252
CDK5RAP2	0	genome.wustl.edu	37	9	123234112	123234112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	123234112	123234112	C	T	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.1772	p.R591Q	1.000	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				56	0	0	91	18	16.5138
PTGS1	0	genome.wustl.edu	37	9	125154645	125154645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	125154645	125154645	C	T	SNP	PTGS1	ENST00000362012	human	ensembl	74_37	+1	known	missense	c.1622	p.P541L	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303				142	0	0	187	27	12.6168
OR1B1	0	genome.wustl.edu	37	9	125391778	125391778	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	125391778	125391778	C	A	SNP	OR1B1	ENST00000304833	human	ensembl	74_37	-1	known	missense	c.37	p.V13F	0.033	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1B1	HGNC	ENSG00000171484				79	0	0	75	10	11.7647
NR6A1	0	genome.wustl.edu	37	9	127316774	127316774	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	127316774	127316774	C	A	SNP	NR6A1	ENST00000487099	human	ensembl	74_37	-1	known	missense	c.218	p.G73V	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR6A1	HGNC	ENSG00000148200				95	0	0	120	22	15.493
LMX1B	0	genome.wustl.edu	37	9	129377676	129377676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	129377676	129377676	C	T	SNP	LMX1B	ENST00000355497	human	ensembl	74_37	+1	known	missense	c.154	p.H52Y	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1B	HGNC	ENSG00000136944				30	0	0	38	9	19.1489
LMX1B	0	genome.wustl.edu	37	9	129377811	129377811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	129377811	129377811	C	T	SNP	LMX1B	ENST00000355497	human	ensembl	74_37	+1	known	missense	c.289	p.R97W	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1B	HGNC	ENSG00000136944				41	0	0	42	9	17.6471
ANGPTL2	0	genome.wustl.edu	37	9	129851253	129851253	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	129851253	129851253	T	C	SNP	ANGPTL2	ENST00000373425	human	ensembl	74_37	-1	known	missense	c.1447	p.M483V	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL2	HGNC	ENSG00000136859				197	0	0	174	30	14.7059
GOLGA2	0	genome.wustl.edu	37	9	131019435	131019435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	131019435	131019435	G	A	SNP	GOLGA2	ENST00000421699	human	ensembl	74_37	-1	known	missense	c.2920	p.R974W	1.000	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110				154	0	0	145	24	14.2012
GOLGA2	0	genome.wustl.edu	37	9	131020362	131020362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	131020362	131020362	G	A	SNP	GOLGA2	ENST00000421699	human	ensembl	74_37	-1	known	missense	c.2324	p.A775V	0.000	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110				59	0	0	33	8	19.5122
PKN3	0	genome.wustl.edu	37	9	131477648	131477648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	131477648	131477648	G	A	SNP	PKN3	ENST00000291906	human	ensembl	74_37	+1	known	missense	c.1717	p.V573I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN3	HGNC	ENSG00000160447				83	0	0	63	16	20.2532
DOLK	0	genome.wustl.edu	37	9	131708405	131708405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	131708405	131708405	G	A	SNP	DOLK	ENST00000372586	human	ensembl	74_37	-1	known	missense	c.1178	p.S393F	1.000	NULL	NULL	-	no_errors	DOLK	HGNC	ENSG00000175283				120	0	0	109	23	17.4242
CRAT	0	genome.wustl.edu	37	9	131873368	131873368	+	RNA	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	131873368	131873368	T	C	SNP	CRAT	ENST00000464290	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CRAT	HGNC	ENSG00000095321				47	0	0	42	7	14.2857
IER5L	0	genome.wustl.edu	37	9	131939119	131939119	+	Nonstop_Mutation	SNP	A	A	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	131939119	131939119	A	T	SNP	IER5L	ENST00000372491	human	ensembl	74_37	-1	known	nonstop	c.1213	p.*405K	1.000	NULL	pfam_IER	-	no_errors	IER5L	HGNC	ENSG00000188483				28	0	0	23	6	20.6897
PRRX2	0	genome.wustl.edu	37	9	132484621	132484621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	132484621	132484621	C	T	SNP	PRRX2	ENST00000372469	human	ensembl	74_37	+1	known	missense	c.752	p.T251M	0.999	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PRRX2	HGNC	ENSG00000167157				62	0	0	51	14	21.5385
QRFP	0	genome.wustl.edu	37	9	133769184	133769184	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	133769184	133769184	C	T	SNP	QRFP	ENST00000343079	human	ensembl	74_37	-1	known	silent	c.42	p.P14	0.845	pfam_P518	pfam_P518	-	no_errors	QRFP	HGNC	ENSG00000188710				81	0	0	123	20	13.986
POMT1	0	genome.wustl.edu	37	9	134386850	134386850	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	134386850	134386850	A	G	SNP	POMT1	ENST00000372228	human	ensembl	74_37	+1	known	missense	c.1048	p.M350V	0.993	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	pfam_Glyco_trans_39,pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT1	HGNC	ENSG00000130714				77	0	0	88	15	14.5631
C9orf96	0	genome.wustl.edu	37	9	136268936	136268936	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	136268936	136268936	G	T	SNP	C9orf96	ENST00000371957	human	ensembl	74_37	+1	known	missense	c.1587	p.W529C	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870				46	0	0	59	15	20.2703
ADAMTS13	0	genome.wustl.edu	37	9	136321236	136321236	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	136321236	136321236	T	C	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	missense	c.3614	p.M1205T	0.341	superfamily_CUB_dom	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				128	0	0	119	28	19.0476
KCNT1	0	genome.wustl.edu	37	9	138657549	138657549	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	138657549	138657549	A	G	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	missense	c.1280	p.Q427R	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				23	0	0	29	7	19.4444
SEC16A	0	genome.wustl.edu	37	9	139354227	139354227	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	139354227	139354227	T	C	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	missense	c.5173	p.T1725A	1.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				26	0	0	25	3	10.7143
SEC16A	0	genome.wustl.edu	37	9	139361486	139361486	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	139361486	139361486	G	T	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	silent	c.3852	p.P1284	0.017	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				45	0	0	73	14	16.092
LCN12	0	genome.wustl.edu	37	9	139848433	139848433	+	RNA	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	139848433	139848433	G	A	SNP	LCN12	ENST00000466277	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LCN12	HGNC	ENSG00000184925				30	0	0	25	8	24.2424
NDOR1	0	genome.wustl.edu	37	9	140108803	140108803	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	140108803	140108803	C	T	SNP	NDOR1	ENST00000371521	human	ensembl	74_37	+1	known	silent	c.660	p.T220	0.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NDOR1	HGNC	ENSG00000188566				157	0	0	132	28	17.5
PNPLA7	0	genome.wustl.edu	37	9	140379084	140379084	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	140379084	140379084	G	T	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.2302	p.L768I	1.000	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				39	0	0	29	6	17.1429
SCARNA8	0	genome.wustl.edu	37	9	19063702	19063702	+	RNA	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	19063702	19063702	G	T	SNP	SCARNA8	ENST00000515924	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SCARNA8	HGNC	ENSG00000251733				82	0	0	119	22	15.6028
SLC24A2	0	genome.wustl.edu	37	9	19576949	19576949	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	19576949	19576949	G	A	SNP	SLC24A2	ENST00000341998	human	ensembl	74_37	-1	known	missense	c.1201	p.R401W	1.000	tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A2	HGNC	ENSG00000155886				106	0	0	145	31	17.6136
MLLT3	0	genome.wustl.edu	37	9	20414331	20414331	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	20414331	20414331	G	A	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	silent	c.513	p.S171	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				63	0	0	103	7	6.36364
MLLT3	0	genome.wustl.edu	37	9	20414370	20414370	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	20414370	20414370	G	A	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	silent	c.474	p.S158	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				67	0	0	64	5	7.24638
LINGO2	0	genome.wustl.edu	37	9	27950348	27950348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	27950348	27950348	G	A	SNP	LINGO2	ENST00000308675	human	ensembl	74_37	-1	known	missense	c.322	p.R108C	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO2	HGNC	ENSG00000174482				125	0	0	160	27	14.4385
NOL6	0	genome.wustl.edu	37	9	33466680	33466680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	33466680	33466680	C	T	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	missense	c.1978	p.V660I	0.996	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271				114	0	0	94	7	6.93069
UBAP2	0	genome.wustl.edu	37	9	33927924	33927924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	33927924	33927924	C	T	SNP	UBAP2	ENST00000360802	human	ensembl	74_37	-1	known	missense	c.2242	p.V748I	0.019	NULL	pfam_DUF3697_Uba2,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073				114	0	0	135	10	6.89655
VCP	0	genome.wustl.edu	37	9	35066769	35066769	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	35066769	35066769	C	T	SNP	VCP	ENST00000358901	human	ensembl	74_37	-1	known	silent	c.348	p.V116	1.000	tigrfam_AAA_ATPase_CDC48	pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase,tigrfam_AAA_ATPase_CDC48	-	no_errors	VCP	HGNC	ENSG00000165280				103	0	0	121	24	16.5517
RECK	0	genome.wustl.edu	37	9	36122901	36122901	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	36122901	36122901	T	C	SNP	RECK	ENST00000377966	human	ensembl	74_37	+1	known	silent	c.2775	p.P925	0.167	NULL	pfam_Kazal_dom,superfamily_Prot_inh_PMP,smart_Kazal_dom	-	no_errors	RECK	HGNC	ENSG00000122707				155	1	0.641026	209	43	17.0635
KIAA2026	0	genome.wustl.edu	37	9	6007371	6007371	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	6007371	6007371	C	T	SNP	KIAA2026	ENST00000399933	human	ensembl	74_37	-1	novel	silent	c.417	p.L139	1.000	superfamily_Bromodomain	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354				48	0	0	33	5	13.1579
RANBP6	0	genome.wustl.edu	37	9	6014724	6014724	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	6014724	6014724	G	T	SNP	RANBP6	ENST00000259569	human	ensembl	74_37	-1	known	missense	c.884	p.S295Y	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040				70	0	0	67	11	14.1026
PGM5	0	genome.wustl.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	70993145	70993145	A	G	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.292	p.I98V	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				57	0	0	105	9	7.89474
SMC5	0	genome.wustl.edu	37	9	72933542	72933542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	72933542	72933542	C	T	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	missense	c.1919	p.A640V	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887				84	0	0	148	23	13.4503
C9orf41	0	genome.wustl.edu	37	9	77614759	77614759	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	77614759	77614759	T	C	SNP	C9orf41	ENST00000376834	human	ensembl	74_37	-1	known	silent	c.618	p.V206	1.000	pfam_N2227	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017				55	0	0	107	29	21.3235
PCSK5	0	genome.wustl.edu	37	9	78790138	78790138	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	78790138	78790138	A	G	SNP	PCSK5	ENST00000376767	human	ensembl	74_37	+1	known	missense	c.1993	p.K665E	0.037	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				32	0	0	25	6	19.3548
FOXB2	0	genome.wustl.edu	37	9	79635218	79635218	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	79635218	79635218	G	A	SNP	FOXB2	ENST00000376708	human	ensembl	74_37	+1	known	silent	c.648	p.K216	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head,prints_Antifreeze_1	-	no_errors	FOXB2	HGNC	ENSG00000204612				15	0	0	19	4	17.3913
GNA14	0	genome.wustl.edu	37	9	80262613	80262613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	80262613	80262613	G	A	SNP	GNA14	ENST00000341700	human	ensembl	74_37	-1	known	missense	c.97	p.R33C	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA14	HGNC	ENSG00000156049				24	0	0	28	3	9.67742
TLE4	0	genome.wustl.edu	37	9	82322068	82322068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	82322068	82322068	C	T	SNP	TLE4	ENST00000376520	human	ensembl	74_37	+1	known	missense	c.967	p.R323C	0.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE4	HGNC	ENSG00000106829				136	0	0	171	32	15.7635
RMI1	0	genome.wustl.edu	37	9	86616917	86616917	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	86616917	86616917	T	G	SNP	RMI1	ENST00000325875	human	ensembl	74_37	+1	known	missense	c.1016	p.L339W	0.062	NULL	pfam_DUF1767	-	no_errors	RMI1	HGNC	ENSG00000178966				53	0	0	68	11	13.9241
GAS1	0	genome.wustl.edu	37	9	89560907	89560907	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	89560907	89560907	T	C	SNP	GAS1	ENST00000298743	human	ensembl	74_37	-1	known	missense	c.788	p.D263G	1.000	NULL	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GAS1	HGNC	ENSG00000180447				29	0	0	22	4	15.3846
NXNL2	0	genome.wustl.edu	37	9	91150404	91150404	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	91150404	91150404	G	T	SNP	NXNL2	ENST00000375854	human	ensembl	74_37	+1	known	nonsense	c.55	p.E19*	1.000	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	NXNL2	HGNC	ENSG00000130045				59	0	0	60	19	24.0506
IPPK	0	genome.wustl.edu	37	9	95420958	95420958	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	95420958	95420958	G	A	SNP	IPPK	ENST00000287996	human	ensembl	74_37	-1	known	silent	c.87	p.C29	1.000	pfam_Ins_P5_2-kin	pfam_Ins_P5_2-kin	-	no_errors	IPPK	HGNC	ENSG00000127080				80	0	0	114	21	15.5556
WNK2	0	genome.wustl.edu	37	9	95992120	95992120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	95992120	95992120	C	T	SNP	WNK2	ENST00000297954	human	ensembl	74_37	+1	known	missense	c.824	p.T275M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK2	HGNC	ENSG00000165238				51	0	0	55	7	11.2903
NUTM2F	0	genome.wustl.edu	37	9	97082005	97082005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	97082005	97082005	C	T	SNP	NUTM2F	ENST00000253262	human	ensembl	74_37	-1	known	missense	c.1375	p.A459T	0.887	NULL	NULL	-	no_errors	NUTM2F	HGNC	ENSG00000130950				163	0	0	167	37	18.1373
NUTM2G	0	genome.wustl.edu	37	9	99700174	99700174	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	99700174	99700174	C	T	SNP	NUTM2G	ENST00000372322	human	ensembl	74_37	+1	known	missense	c.1331	p.A444V	0.489	NULL	NULL	-	no_errors	NUTM2G	HGNC	ENSG00000188152				160	0	0	187	25	11.7925
ENSG00000238643	0	genome.wustl.edu	37	GL000229.1	17387	17387	+	RNA	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	GL000229.1	17387	17387	T	A	SNP	ENSG00000238643	ENST00000459109	human	ensembl	74_37	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	CT978678.1	Clone_based_ensembl_gene	ENSG00000238643				32	0	0	39	4	9.30233
NXF4	0	genome.wustl.edu	37	X	101818313	101818313	+	RNA	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	101818313	101818313	A	C	SNP	NXF4	ENST00000360035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NXF4	HGNC	ENSG00000196970				68	0	0	64	16	20
BHLHB9	0	genome.wustl.edu	37	X	102004814	102004814	+	Silent	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	102004814	102004814	T	G	SNP	BHLHB9	ENST00000361229	human	ensembl	74_37	+1	known	silent	c.891	p.R297	0.261	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908				110	0	0	125	21	14.3836
PLP1	0	genome.wustl.edu	37	X	103041611	103041611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	103041611	103041611	C	T	SNP	PLP1	ENST00000303958	human	ensembl	74_37	+1	known	missense	c.409	p.R137W	1.000	pfam_Myelin_PLP,prints_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	PLP1	HGNC	ENSG00000123560				274	0	0	310	53	14.6006
H2BFWT	0	genome.wustl.edu	37	X	103267881	103267881	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	103267881	103267881	C	T	SNP	H2BFWT	ENST00000217926	human	ensembl	74_37	-1	known	missense	c.352	p.A118T	0.996	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	H2BFWT	HGNC	ENSG00000123569				65	0	0	74	12	13.9535
MID1	0	genome.wustl.edu	37	X	10427835	10427835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	10427835	10427835	G	A	SNP	MID1	ENST00000317552	human	ensembl	74_37	-1	known	missense	c.1298	p.S433L	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871				184	0	0	181	26	12.5604
NRK	0	genome.wustl.edu	37	X	105152838	105152838	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	105152838	105152838	A	C	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	missense	c.1208	p.Q403P	0.977	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				100	0	0	110	16	12.6984
FRMPD3	0	genome.wustl.edu	37	X	106841349	106841349	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	106841349	106841349	A	C	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	missense	c.2339	p.H780P	0.997	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234				95	0	0	86	10	10.4167
GUCY2F	0	genome.wustl.edu	37	X	108636252	108636252	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	108636252	108636252	A	G	SNP	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	silent	c.2457	p.N819	1.000	superfamily_Kinase-like_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890				141	0	0	211	39	15.6
AMMECR1	0	genome.wustl.edu	37	X	109441848	109441848	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	109441848	109441848	T	C	SNP	AMMECR1	ENST00000262844	human	ensembl	74_37	-1	known	missense	c.902	p.K301R	1.000	pfam_AMMECR1_domain,superfamily_AMMECR1_domain,pfscan_AMMECR1_domain	pfam_AMMECR1_domain,superfamily_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	-	no_errors	AMMECR1	HGNC	ENSG00000101935				50	0	0	71	17	19.3182
GLUD2	0	genome.wustl.edu	37	X	120181650	120181650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	120181650	120181650	G	A	SNP	GLUD2	ENST00000328078	human	ensembl	74_37	+1	known	missense	c.112	p.A38T	0.020	NULL	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890				43	0	0	44	6	12
PRPS2	0	genome.wustl.edu	37	X	12809648	12809648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	12809648	12809648	C	T	SNP	PRPS2	ENST00000398491	human	ensembl	74_37	+1	known	missense	c.32	p.S11L	1.000	tigrfam_Rib-P_diPkinase	pfam_PRibTrfase_dom,tigrfam_Rib-P_diPkinase	-	no_errors	PRPS2	HGNC	ENSG00000101911				51	0	0	49	8	14.0351
ELF4	0	genome.wustl.edu	37	X	129201411	129201411	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	129201411	129201411	G	A	SNP	ELF4	ENST00000308167	human	ensembl	74_37	-1	known	missense	c.1277	p.T426M	1.000	NULL	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF4	HGNC	ENSG00000102034				186	0	0	170	30	15
TLR8	0	genome.wustl.edu	37	X	12938574	12938574	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	12938574	12938574	G	A	SNP	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	missense	c.1415	p.R472H	0.000	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				80	0	0	122	22	15.2778
SLC25A14	0	genome.wustl.edu	37	X	129483330	129483330	+	RNA	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	129483330	129483330	T	C	SNP	SLC25A14	ENST00000467346	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC25A14	HGNC	ENSG00000102078				27	0	0	42	9	17.6471
MOSPD1	0	genome.wustl.edu	37	X	134025602	134025602	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	134025602	134025602	G	T	SNP	MOSPD1	ENST00000370777	human	ensembl	74_37	-1	known	missense	c.520	p.L174M	1.000	NULL	pfam_MSP_dom,superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	MOSPD1	HGNC	ENSG00000101928				163	0	0	170	27	13.7056
DDX26B	0	genome.wustl.edu	37	X	134709114	134709114	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	134709114	134709114	T	C	SNP	DDX26B	ENST00000370752	human	ensembl	74_37	+1	known	missense	c.1736	p.L579P	0.992	NULL	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359				155	0	0	237	42	15.0538
MAP7D3	0	genome.wustl.edu	37	X	135314371	135314371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	135314371	135314371	C	T	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	missense	c.691	p.V231I	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				122	0	0	130	15	10.3448
GPR112	0	genome.wustl.edu	37	X	135405372	135405372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	135405372	135405372	G	A	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.506	p.S169N	0.003	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				163	0	0	230	46	16.6667
GPR112	0	genome.wustl.edu	37	X	135428617	135428617	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	135428617	135428617	A	C	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.2752	p.T918P	0.002	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				202	0	0	197	48	19.5918
GPR112	0	genome.wustl.edu	37	X	135431470	135431470	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	135431470	135431470	A	G	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.5605	p.R1869G	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				116	0	0	146	35	19.337
GPR101	0	genome.wustl.edu	37	X	136112734	136112734	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	136112734	136112734	A	G	SNP	GPR101	ENST00000298110	human	ensembl	74_37	-1	known	missense	c.1100	p.V367A	0.055	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370				195	0	0	209	46	18.0392
ZIC3	0	genome.wustl.edu	37	X	136649262	136649262	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	136649262	136649262	G	A	SNP	ZIC3	ENST00000287538	human	ensembl	74_37	+1	known	missense	c.412	p.G138R	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925				29	0	0	20	6	23.0769
GEMIN8	0	genome.wustl.edu	37	X	14038456	14038456	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	14038456	14038456	C	T	SNP	GEMIN8	ENST00000380523	human	ensembl	74_37	-1	known	silent	c.213	p.A71	0.000	NULL	NULL	-	no_errors	GEMIN8	HGNC	ENSG00000046647				192	0	0	207	28	11.9149
MAGEC1	0	genome.wustl.edu	37	X	140995432	140995432	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	140995432	140995432	T	A	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.2242	p.S748T	0.718	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				343	0	0	414	72	14.8148
AFF2	0	genome.wustl.edu	37	X	147743680	147743680	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	147743680	147743680	G	A	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	silent	c.432	p.L144	0.979	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				360	0	0	467	74	13.6784
MTM1	0	genome.wustl.edu	37	X	149809853	149809853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	149809853	149809853	C	T	SNP	MTM1	ENST00000370396	human	ensembl	74_37	+1	known	missense	c.640	p.R214W	0.991	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100				116	0	0	198	32	13.913
HMGB3	0	genome.wustl.edu	37	X	150156290	150156290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	150156290	150156290	C	T	SNP	HMGB3	ENST00000325307	human	ensembl	74_37	+1	known	missense	c.506	p.A169V	0.165	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGB3	HGNC	ENSG00000029993				94	0	0	87	22	20.1835
GPR50	0	genome.wustl.edu	37	X	150348782	150348782	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	150348782	150348782	T	G	SNP	GPR50	ENST00000218316	human	ensembl	74_37	+1	known	missense	c.727	p.F243V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Melatonin_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mel_rcpt_1X,prints_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195				156	0	0	152	25	14.1243
CNGA2	0	genome.wustl.edu	37	X	150911720	150911720	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	150911720	150911720	C	T	SNP	CNGA2	ENST00000329903	human	ensembl	74_37	+1	known	missense	c.745	p.R249C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862				199	0	0	171	33	16.1765
MAGEA12	0	genome.wustl.edu	37	X	151899916	151899916	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	151899916	151899916	T	C	SNP	MAGEA12	ENST00000357916	human	ensembl	74_37	-1	known	silent	c.885	p.G295	0.000	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401				295	0	0	322	52	13.9037
PNMA5	0	genome.wustl.edu	37	X	152158876	152158876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	152158876	152158876	C	T	SNP	PNMA5	ENST00000361887	human	ensembl	74_37	-1	known	missense	c.1267	p.G423R	0.000	NULL	NULL	-	no_errors	PNMA5	HGNC	ENSG00000198883				160	0	0	144	29	16.763
ATP2B3	0	genome.wustl.edu	37	X	152822455	152822455	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	152822455	152822455	A	G	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.2407	p.K803E	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				13	0	0	12	3	20
AVPR2	0	genome.wustl.edu	37	X	153171758	153171758	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	153171758	153171758	G	T	SNP	AVPR2	ENST00000337474	human	ensembl	74_37	+1	known	silent	c.798	p.V266	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vasoprsn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895				158	0	0	130	15	10.3448
TMEM187	0	genome.wustl.edu	37	X	153247849	153247849	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	153247849	153247849	G	A	SNP	TMEM187	ENST00000369982	human	ensembl	74_37	+1	known	silent	c.336	p.A112	0.182	NULL	NULL	-	no_errors	TMEM187	HGNC	ENSG00000177854				35	0	0	23	4	14.8148
VAMP7	0	genome.wustl.edu	37	X	155127786	155127786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	155127786	155127786	G	A	SNP	VAMP7	ENST00000262640	human	ensembl	74_37	+1	known	missense	c.215	p.R72H	1.000	superfamily_Longin-like_dom,pfscan_Longin_dom	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	VAMP7	HGNC	ENSG00000124333				78	0	0	121	12	9.02256
ZRSR2	0	genome.wustl.edu	37	X	15841310	15841310	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	15841310	15841310	G	A	SNP	ZRSR2	ENST00000307771	human	ensembl	74_37	+1	known	missense	c.1394	p.G465D	0.410	NULL	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,pfscan_RRM_dom,prints_U2_small	-	no_errors	ZRSR2	HGNC	ENSG00000169249				53	0	0	55	10	15.3846
GPR64	0	genome.wustl.edu	37	X	19045371	19045371	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	19045371	19045371	T	C	SNP	GPR64	ENST00000379869	human	ensembl	74_37	-1	known	missense	c.436	p.T146A	0.051	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698				165	0	0	236	41	14.8014
KLHL34	0	genome.wustl.edu	37	X	21675009	21675009	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	21675009	21675009	C	T	SNP	KLHL34	ENST00000379499	human	ensembl	74_37	-1	known	missense	c.898	p.A300T	0.018	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL34	HGNC	ENSG00000185915				25	0	0	31	5	13.8889
PHEX	0	genome.wustl.edu	37	X	22051188	22051188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	22051188	22051188	C	T	SNP	PHEX	ENST00000379374	human	ensembl	74_37	+1	known	missense	c.65	p.A22V	0.996	NULL	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174				149	0	0	161	23	12.5
PTCHD1	0	genome.wustl.edu	37	X	23411550	23411550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	23411550	23411550	G	A	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	missense	c.1915	p.E639K	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186				75	0	0	122	24	16.4384
ACOT9	0	genome.wustl.edu	37	X	23722911	23722911	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	23722911	23722911	C	T	SNP	ACOT9	ENST00000379303	human	ensembl	74_37	-1	known	silent	c.1158	p.V386	0.995	NULL	pfam_Thioestr_supf	-	no_errors	ACOT9	HGNC	ENSG00000123130				213	1	0.46729	340	21	5.81717
MXRA5	0	genome.wustl.edu	37	X	3229371	3229371	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	3229371	3229371	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.6873	p.S2291	0.058	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				139	0	0	121	29	19.3333
MXRA5	0	genome.wustl.edu	37	X	3235196	3235196	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	3235196	3235196	G	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.6526	p.P2176T	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				18	0	0	25	6	19.3548
MXRA5	0	genome.wustl.edu	37	X	3235707	3235707	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	3235707	3235707	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.6015	p.H2005	0.069	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				61	0	0	69	7	9.21053
FAM47A	0	genome.wustl.edu	37	X	34149740	34149740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	34149740	34149740	G	A	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	missense	c.656	p.P219L	0.000	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				118	0	0	131	11	7.74648
FAM47C	0	genome.wustl.edu	37	X	37027561	37027561	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	37027561	37027561	G	T	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	nonsense	c.1078	p.E360*	0.947	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				191	0	0	179	35	16.3551
FAM47C	0	genome.wustl.edu	37	X	37028339	37028339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	37028339	37028339	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.1856	p.R619H	0.002	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				172	0	0	168	30	15.1515
XK	0	genome.wustl.edu	37	X	37545386	37545386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	37545386	37545386	G	A	SNP	XK	ENST00000378616	human	ensembl	74_37	+1	known	missense	c.172	p.V58I	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XK	HGNC	ENSG00000047597				27	0	0	31	6	16.2162
CASK	0	genome.wustl.edu	37	X	41413004	41413004	+	Silent	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	41413004	41413004	T	C	SNP	CASK	ENST00000378163	human	ensembl	74_37	-1	known	silent	c.2007	p.A669	0.693	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Prot_kinase_dom,pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Guanylate_kin-like	-	no_errors	CASK	HGNC	ENSG00000147044				20	0	0	40	6	13.0435
MAOA	0	genome.wustl.edu	37	X	43603382	43603382	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	43603382	43603382	C	T	SNP	MAOA	ENST00000338702	human	ensembl	74_37	+1	known	silent	c.1401	p.T467	0.000	NULL	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_FAD_bind_dom,prints_Flavin_amine_oxidase	-	no_errors	MAOA	HGNC	ENSG00000189221				56	0	0	66	20	23.2558
RBM10	0	genome.wustl.edu	37	X	47030582	47030582	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	47030582	47030582	G	T	SNP	RBM10	ENST00000377604	human	ensembl	74_37	+1	known	missense	c.357	p.E119D	0.922	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872				52	0	0	67	4	5.6338
ARAF	0	genome.wustl.edu	37	X	47424262	47424262	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	47424262	47424262	G	A	SNP	ARAF	ENST00000377045	human	ensembl	74_37	+1	known	silent	c.267	p.E89	1.000	pfam_Raf-like_ras-bd,smart_Raf-like_ras-bd,pfscan_Raf-like_ras-bd	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	ARAF	HGNC	ENSG00000078061				27	0	0	33	9	21.4286
SYN1	0	genome.wustl.edu	37	X	47464744	47464744	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	47464744	47464744	G	A	SNP	SYN1	ENST00000295987	human	ensembl	74_37	-1	known	missense	c.562	p.H188Y	1.000	pfam_Synapsin_pre-ATP-grasp_dom,superfamily_PreATP-grasp_dom	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN1	HGNC	ENSG00000008056				48	0	0	38	9	19.1489
WDR13	0	genome.wustl.edu	37	X	48458953	48458953	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	48458953	48458953	A	G	SNP	WDR13	ENST00000218056	human	ensembl	74_37	+1	known	missense	c.770	p.D257G	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940				62	0	0	44	9	16.9811
CCDC120	0	genome.wustl.edu	37	X	48923103	48923103	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	48923103	48923103	A	G	SNP	CCDC120	ENST00000603986	human	ensembl	74_37	+1	known	silent	c.906	p.P302	0.007	NULL	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144				46	0	0	42	10	19.2308
CCDC120	0	genome.wustl.edu	37	X	48925339	48925339	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	48925339	48925339	G	A	SNP	CCDC120	ENST00000603986	human	ensembl	74_37	+1	known	silent	c.1689	p.V563	0.000	NULL	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144				17	0	0	23	3	11.5385
DGKK	0	genome.wustl.edu	37	X	50125581	50125581	+	RNA	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	50125581	50125581	A	G	SNP	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466				39	0	0	64	15	18.9873
GSPT2	0	genome.wustl.edu	37	X	51487354	51487354	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	51487354	51487354	A	C	SNP	GSPT2	ENST00000340438	human	ensembl	74_37	+1	known	missense	c.632	p.H211P	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,prints_EF_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom	-	no_errors	GSPT2	HGNC	ENSG00000189369				54	0	0	29	13	30.9524
MAGED1	0	genome.wustl.edu	37	X	51637865	51637865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	51637865	51637865	C	T	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	missense	c.188	p.T63M	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222				143	0	0	174	31	15.122
KDM5C	0	genome.wustl.edu	37	X	53222406	53222406	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	53222406	53222406	C	T	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	missense	c.4426	p.E1476K	1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				87	0	0	108	16	12.9032
IQSEC2	0	genome.wustl.edu	37	X	53284024	53284024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	53284024	53284024	C	T	SNP	IQSEC2	ENST00000396435	human	ensembl	74_37	-1	known	missense	c.1089	p.M363I	1.000	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_P-loop_NTPase,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC2	HGNC	ENSG00000124313				32	0	0	23	5	17.8571
FAM120C	0	genome.wustl.edu	37	X	54209086	54209086	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	54209086	54209086	C	T	SNP	FAM120C	ENST00000375180	human	ensembl	74_37	-1	known	silent	c.546	p.E182	0.998	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083				42	0	0	34	4	10.5263
FAM120C	0	genome.wustl.edu	37	X	54209092	54209092	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	54209092	54209092	C	T	SNP	FAM120C	ENST00000375180	human	ensembl	74_37	-1	known	silent	c.540	p.L180	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083				46	0	0	34	4	10.5263
USP51	0	genome.wustl.edu	37	X	55513677	55513677	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	55513677	55513677	C	T	SNP	USP51	ENST00000500968	human	ensembl	74_37	-1	known	missense	c.1696	p.A566T	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP51	HGNC	ENSG00000247746				51	0	0	56	11	16.4179
MTMR8	0	genome.wustl.edu	37	X	63555964	63555964	+	Silent	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	63555964	63555964	G	T	SNP	MTMR8	ENST00000374852	human	ensembl	74_37	-1	known	silent	c.1146	p.S382	0.694	smart_Tyr_Pase_cat	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat	-	no_errors	MTMR8	HGNC	ENSG00000102043				44	0	0	93	16	14.6789
AR	0	genome.wustl.edu	37	X	66766584	66766584	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	66766584	66766584	C	T	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	silent	c.1596	p.S532	0.824	NULL	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				28	0	0	29	7	19.4444
OPHN1	0	genome.wustl.edu	37	X	67412807	67412807	+	Silent	SNP	A	A	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	67412807	67412807	A	C	SNP	OPHN1	ENST00000355520	human	ensembl	74_37	-1	known	silent	c.1230	p.T410	0.667	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482				88	0	0	100	15	13.0435
RAB41	0	genome.wustl.edu	37	X	69503872	69503872	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	69503872	69503872	A	G	SNP	RAB41	ENST00000374473	human	ensembl	74_37	+1	known	silent	c.528	p.K176	0.997	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB41	HGNC	ENSG00000147127				48	0	0	74	7	8.64198
DLG3	0	genome.wustl.edu	37	X	69669629	69669629	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	69669629	69669629	C	A	SNP	DLG3	ENST00000194900	human	ensembl	74_37	+1	known	missense	c.677	p.P226H	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG3	HGNC	ENSG00000082458				35	0	0	23	9	28.125
DLG3	0	genome.wustl.edu	37	X	69719839	69719839	+	Silent	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	69719839	69719839	C	A	SNP	DLG3	ENST00000194900	human	ensembl	74_37	+1	known	silent	c.2181	p.G727	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG3	HGNC	ENSG00000082458				59	0	0	60	13	17.8082
NONO	0	genome.wustl.edu	37	X	70517705	70517705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	70517705	70517705	C	T	SNP	NONO	ENST00000276079	human	ensembl	74_37	+1	known	missense	c.1048	p.R350C	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NONO	HGNC	ENSG00000147140				45	0	0	69	7	9.21053
CXCR3	0	genome.wustl.edu	37	X	70836598	70836598	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	70836598	70836598	G	A	SNP	CXCR3	ENST00000373691	human	ensembl	74_37	-1	known	silent	c.865	p.L289	0.979	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR4	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR3,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810				41	0	0	27	6	18.1818
UPRT	0	genome.wustl.edu	37	X	74494453	74494453	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	74494453	74494453	C	A	SNP	UPRT	ENST00000373383	human	ensembl	74_37	+1	known	missense	c.364	p.L122I	1.000	NULL	pfam_PRibTrfase_dom	-	no_errors	UPRT	HGNC	ENSG00000094841				48	0	0	25	4	13.7931
MAGEE2	0	genome.wustl.edu	37	X	75004644	75004644	+	Silent	SNP	C	C	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	75004644	75004644	C	T	SNP	MAGEE2	ENST00000373359	human	ensembl	74_37	-1	known	silent	c.243	p.A81	0.927	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675				84	0	0	80	12	13.0435
MAGEE1	0	genome.wustl.edu	37	X	75649353	75649353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	75649353	75649353	G	A	SNP	MAGEE1	ENST00000361470	human	ensembl	74_37	+1	known	missense	c.1030	p.V344M	0.003	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934				66	0	0	84	8	8.69565
MIR325	0	genome.wustl.edu	37	X	76225846	76225846	+	RNA	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	76225846	76225846	G	T	SNP	MIR325	ENST00000385260	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	MIR325	HGNC	ENSG00000207995				53	0	0	82	22	21.1538
ATRX	0	genome.wustl.edu	37	X	76920196	76920196	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	76920196	76920196	T	C	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.3881	p.D1294G	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				80	0	0	121	18	12.9496
PNPLA4	0	genome.wustl.edu	37	X	7870101	7870101	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	7870101	7870101	G	A	SNP	PNPLA4	ENST00000381042	human	ensembl	74_37	-1	known	nonsense	c.559	p.R187*	0.004	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA4	HGNC	ENSG00000006757				109	0	0	145	17	10.4938
HDX	0	genome.wustl.edu	37	X	83724232	83724232	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	83724232	83724232	G	T	SNP	HDX	ENST00000297977	human	ensembl	74_37	-1	known	missense	c.499	p.L167I	0.296	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HDX	HGNC	ENSG00000165259				116	1	0.854701	127	28	18.0645
APOOL	0	genome.wustl.edu	37	X	84310876	84310876	+	Silent	SNP	G	G	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	84310876	84310876	G	A	SNP	APOOL	ENST00000373173	human	ensembl	74_37	+1	known	silent	c.339	p.P113	0.015	pfam_Apolipoprotein_O	pfam_Apolipoprotein_O	-	no_errors	APOOL	HGNC	ENSG00000155008				30	0	0	46	10	17.8571
TBL1X	0	genome.wustl.edu	37	X	9660159	9660159	+	Silent	SNP	A	A	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	9660159	9660159	A	G	SNP	TBL1X	ENST00000217964	human	ensembl	74_37	+1	known	silent	c.756	p.G252	0.972	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849				200	0	0	236	55	18.9003
TSPAN6	0	genome.wustl.edu	37	X	99891682	99891682	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	99891682	99891682	G	T	SNP	TSPAN6	ENST00000373020	human	ensembl	74_37	-1	known	missense	c.10	p.P4T	0.992	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN6	HGNC	ENSG00000000003				35	0	0	30	3	9.09091
ENSG00000269175	0	genome.wustl.edu	37	1	101456193	101456193	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	101456193	101456193	A	-	DEL	ENSG00000269175	ENST00000593496	human	ensembl	74_37	+1	known	frame_shift_del	c.187	p.R66fs	0.002	NULL	NULL	-	no_errors	AC093157.1	Clone_based_ensembl_gene	ENSG00000269175				38	0	0	49	22	30.9859
TTLL10	0	genome.wustl.edu	37	1	1116223	1116223	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	1116223	1116223	G	-	DEL	TTLL10	ENST00000379289	human	ensembl	74_37	+1	known	frame_shift_del	c.738	p.V249fs	0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL10	HGNC	ENSG00000162571				9	0	0	15	2	11.7647
SYCP1	0	genome.wustl.edu	37	1	115430252	115430252	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	115430252	115430252	A	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.1196	p.N401fs	0.995	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				37	0	0	69	15	17.8571
ATP1A1OS	0	genome.wustl.edu	37	1	116935436	116935436	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	116935436	116935436	T	-	DEL	ATP1A1OS	ENST00000608511	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATP1A1OS	HGNC	ENSG00000203865				37	0	0	65	11	14.4737
CD58	0	genome.wustl.edu	37	1	117087118	117087118	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	117087118	117087118	T	-	DEL	CD58	ENST00000369489	human	ensembl	74_37	-1	known	frame_shift_del	c.179	p.K60fs	0.048	NULL	NULL	-	no_errors	CD58	HGNC	ENSG00000116815				41	0	0	57	9	13.6364
PIAS3	0	genome.wustl.edu	37	1	145578385	145578385	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	145578385	145578385	C	-	DEL	PIAS3	ENST00000393045	human	ensembl	74_37	+1	known	frame_shift_del	c.348	p.P118fs	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS3	HGNC	ENSG00000131788				148	0	0	174	26	13
VPS45	0	genome.wustl.edu	37	1	150082564	150082564	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	150082564	150082564	T	-	DEL	VPS45	ENST00000484306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631				30	0	0	41	25	37.8788
PLEKHO1	0	genome.wustl.edu	37	1	150131249	150131249	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	150131249	150131249	C	-	DEL	PLEKHO1	ENST00000025469	human	ensembl	74_37	+1	known	frame_shift_del	c.659	p.Q222fs	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHO1	HGNC	ENSG00000023902				94	0	0	104	16	13.3333
RPTN	0	genome.wustl.edu	37	1	152128528	152128528	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	152128528	152128528	T	-	DEL	RPTN	ENST00000316073	human	ensembl	74_37	-1	known	frame_shift_del	c.1047	p.G350fs	0.004	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	RPTN	HGNC	ENSG00000215853				963	0	0	1105	201	15.3905
FLG2	0	genome.wustl.edu	37	1	152325255	152325256	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	152325255	152325256	-	TG	INS	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	frame_shift_ins	c.5007_5006	p.T1670fs	0.000:0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				444	0	0	549	72	11.5942
CRCT1	0	genome.wustl.edu	37	1	152487960	152487962	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	152487960	152487962	CCT	-	DEL	CRCT1	ENST00000368790	human	ensembl	74_37	+1	known	in_frame_del	c.101_103	p.S38in_frame_del	0.014:0.021:0.097	NULL	NULL	-	no_errors	CRCT1	HGNC	ENSG00000169509				25	0	0	23	6	20.6897
CLK2	0	genome.wustl.edu	37	1	155238600	155238600	+	RNA	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	155238600	155238600	G	-	DEL	CLK2	ENST00000497188	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CLK2	HGNC	ENSG00000176444				64	0	0	55	13	19.1176
MEX3A	0	genome.wustl.edu	37	1	156046866	156046867	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	156046866	156046867	-	G	INS	MEX3A	ENST00000532414	human	ensembl	74_37	-1	known	frame_shift_ins	c.1062_1061	p.R355fs	0.998:1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3A	HGNC	ENSG00000254726				93	0	0	124	27	17.8808
VANGL2	0	genome.wustl.edu	37	1	160389203	160389203	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	160389203	160389203	G	-	DEL	VANGL2	ENST00000368061	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.V202fs	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738				179	0	0	192	30	13.5135
ENSG00000228863	0	genome.wustl.edu	37	1	160640798	160640798	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	160640798	160640798	T	-	DEL	ENSG00000228863	ENST00000598917	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	RP11-404F10.2	Clone_based_vega_gene	ENSG00000228863				10	0	0	18	10	35.7143
ARHGAP30	0	genome.wustl.edu	37	1	161023062	161023062	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	161023062	161023062	C	-	DEL	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	frame_shift_del	c.650	p.G217fs	0.998	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				72	0	0	98	9	8.41121
CDK11A	0	genome.wustl.edu	37	1	1635530	1635530	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	1635530	1635530	G	-	DEL	CDK11A	ENST00000404249	human	ensembl	74_37	-1	known	frame_shift_del	c.1742	p.P581fs	0.242	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128				57	0	0	49	12	19.6721
C1orf112	0	genome.wustl.edu	37	1	169822809	169822809	+	RNA	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	169822809	169822809	A	-	DEL	C1orf112	ENST00000459772	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf112	HGNC	ENSG00000000460				96	0	0	222	37	14.2857
FMO2	0	genome.wustl.edu	37	1	171178258	171178258	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	171178258	171178258	T	-	DEL	FMO2	ENST00000529935	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.941	-	-	-	no_errors	FMO2	HGNC	ENSG00000094963				14	0	0	14	3	17.6471
GNB1	0	genome.wustl.edu	37	1	1749278	1749279	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	1749278	1749279	GA	-	DEL	GNB1	ENST00000378609	human	ensembl	74_37	-1	known	frame_shift_del	c.94_93	p.Q32fs	1.000:0.979	pirsf_Guanine_nucleotide-bd_bsu,superfamily_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB1	HGNC	ENSG00000078369				45	0	0	71	8	10.1266
CEP350	0	genome.wustl.edu	37	1	179982981	179982981	+	Splice_Site	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	179982981	179982981	G	-	DEL	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	splice_site_del	c.1394-1	e9-1	0.963	-	-	-	no_errors	CEP350	HGNC	ENSG00000135837				114	0	0	171	19	10
ARHGEF10L	0	genome.wustl.edu	37	1	18021551	18021552	+	RNA	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	18021551	18021552	-	G	INS	ARHGEF10L	ENST00000495593	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964				97	0	0	88	19	17.757
DHX9	0	genome.wustl.edu	37	1	182856513	182856514	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	182856513	182856514	-	G	INS	DHX9	ENST00000367549	human	ensembl	74_37	+1	known	frame_shift_ins	c.3757_3758	p.A1255fs	0.846:0.996	NULL	pfam_dsRNA-bd_dom,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_dsRNA-bd_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_dsRNA-bd_dom	-	no_errors	DHX9	HGNC	ENSG00000135829				77	0	0	79	13	14.1304
KCNT2	0	genome.wustl.edu	37	1	196295987	196295987	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	196295987	196295987	T	-	DEL	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	frame_shift_del	c.2136	p.A713fs	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				64	0	0	134	15	10.0671
ZBTB41	0	genome.wustl.edu	37	1	197145703	197145703	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	197145703	197145703	T	-	DEL	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	frame_shift_del	c.1870	p.I624fs	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888				60	0	0	111	21	15.9091
ZBTB41	0	genome.wustl.edu	37	1	197168890	197168890	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	197168890	197168890	T	-	DEL	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	frame_shift_del	c.714	p.K238fs	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888				29	0	0	42	7	14.2857
CRB1	0	genome.wustl.edu	37	1	197404311	197404312	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	197404311	197404312	TC	-	DEL	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	frame_shift_del	c.3318_3319	p.S1108fs	1.000:1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				86	0	0	131	18	12.0805
KDM5B	0	genome.wustl.edu	37	1	202699003	202699003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	202699003	202699003	G	-	DEL	KDM5B	ENST00000367264	human	ensembl	74_37	-1	known	frame_shift_del	c.4437	p.K1480fs	0.986	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139				217	0	0	353	52	12.8395
PLEKHA6	0	genome.wustl.edu	37	1	204228411	204228411	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	204228411	204228411	C	-	DEL	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	frame_shift_del	c.982	p.V328fs	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				102	0	0	95	12	11.215
CR1	0	genome.wustl.edu	37	1	207696973	207696973	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	207696973	207696973	C	-	DEL	CR1	ENST00000367049	human	ensembl	74_37	+1	known	frame_shift_del	c.505	p.T171fs	0.129	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				75	0	0	90	13	12.6214
IRF6	0	genome.wustl.edu	37	1	209961801	209961801	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	209961801	209961801	G	-	DEL	IRF6	ENST00000367021	human	ensembl	74_37	-1	known	frame_shift_del	c.1368	p.S457fs	0.671	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF6	HGNC	ENSG00000117595				109	0	0	119	20	14.3885
RCOR3	0	genome.wustl.edu	37	1	211451507	211451507	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	211451507	211451507	A	-	DEL	RCOR3	ENST00000367005	human	ensembl	74_37	+1	known	frame_shift_del	c.391	p.T133fs	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR3	HGNC	ENSG00000117625				69	0	0	154	24	13.4831
EIF4G3	0	genome.wustl.edu	37	1	21226332	21226332	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	21226332	21226332	T	-	DEL	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	frame_shift_del	c.1707	p.V570fs	0.003	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151				225	2	0.881057	372	58	13.4884
RAB3GAP2	0	genome.wustl.edu	37	1	220324662	220324662	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	220324662	220324662	T	-	DEL	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	frame_shift_del	c.4113	p.K1371fs	0.982	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				130	0	0	204	34	14.2857
USP48	0	genome.wustl.edu	37	1	22033386	22033387	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	22033386	22033387	AA	-	DEL	USP48	ENST00000529637	human	ensembl	74_37	-1	novel	frame_shift_del	c.1975_1974	p.S659fs	0.000:0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				32	0	0	45	11	19.6429
EPHB2	0	genome.wustl.edu	37	1	23240246	23240246	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	23240246	23240246	A	-	DEL	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	frame_shift_del	c.3051	p.K1020fs	0.270	NULL	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				26	0	0	25	4	13.7931
OR14C36	0	genome.wustl.edu	37	1	248512384	248512384	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	248512384	248512384	T	-	DEL	OR14C36	ENST00000317861	human	ensembl	74_37	+1	known	frame_shift_del	c.308	p.F105fs	0.004	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14C36	HGNC	ENSG00000177174				66	0	0	69	11	13.75
TMEM57	0	genome.wustl.edu	37	1	25775374	25775375	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	25775374	25775375	-	T	INS	TMEM57	ENST00000374343	human	ensembl	74_37	+1	known	frame_shift_ins	c.298_299	p.A103fs	1.000:1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178				30	0	0	79	11	12.2222
ARID1A	0	genome.wustl.edu	37	1	27023769	27023769	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	27023769	27023769	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.875	p.T294fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				15	0	0	5	5	50
ARID1A	0	genome.wustl.edu	37	1	27106804	27106804	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	27106804	27106804	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.6415	p.F2141fs	0.999	pfam_DUF3518,superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				196	0	0	255	24	8.60215
SYTL1	0	genome.wustl.edu	37	1	27676357	27676357	+	RNA	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	27676357	27676357	C	-	DEL	SYTL1	ENST00000490170	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SYTL1	HGNC	ENSG00000142765				14	0	0	8	3	27.2727
YTHDF2	0	genome.wustl.edu	37	1	29069013	29069013	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	29069013	29069013	G	-	DEL	YTHDF2	ENST00000373812	human	ensembl	74_37	+1	known	frame_shift_del	c.231	p.G79fs	0.999	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF2	HGNC	ENSG00000198492				192	1	0.518135	237	37	13.5036
EPB41	0	genome.wustl.edu	37	1	29362428	29362428	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	29362428	29362428	T	-	DEL	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	frame_shift_del	c.1456	p.F487fs	1.000	pirsf_Band_41_protein,pfam_FERM_PH-like_C,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023				56	0	0	112	8	6.66667
MAP7D1	0	genome.wustl.edu	37	1	36644580	36644580	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	36644580	36644580	A	-	DEL	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	frame_shift_del	c.2084	p.K696fs	1.000	pfam_MAP7	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				8	0	0	9	3	25
HIVEP3	0	genome.wustl.edu	37	1	41979244	41979244	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	41979244	41979244	G	-	DEL	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	frame_shift_del	c.5648	p.P1883fs	0.008	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				42	0	0	53	13	19.697
MAST2	0	genome.wustl.edu	37	1	46494559	46494559	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	46494559	46494559	T	-	DEL	MAST2	ENST00000361297	human	ensembl	74_37	+1	known	frame_shift_del	c.2172	p.F726fs	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST2	HGNC	ENSG00000086015				365	1	0.273224	438	68	13.4387
CYP4Z1	0	genome.wustl.edu	37	1	47581140	47581141	+	RNA	DEL	AA	AA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	47581140	47581141	AA	-	DEL	CYP4Z1	ENST00000471598	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010:0.008	-	-	-	no_errors	CYP4Z1	HGNC	ENSG00000186160				17	0	0	26	4	13.3333
PODN	0	genome.wustl.edu	37	1	53543377	53543377	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	53543377	53543377	C	-	DEL	PODN	ENST00000312553	human	ensembl	74_37	+1	known	frame_shift_del	c.903	p.P303fs	0.997	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348				286	1	0.348432	374	62	14.2202
C1orf177	0	genome.wustl.edu	37	1	55279487	55279487	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	55279487	55279487	A	-	DEL	C1orf177	ENST00000371273	human	ensembl	74_37	+1	known	frame_shift_del	c.763	p.K257fs	0.997	NULL	NULL	-	no_errors	C1orf177	HGNC	ENSG00000162398				41	0	0	84	11	11.5789
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				31	0	0	57	9	13.6364
JAK1	0	genome.wustl.edu	37	1	65306997	65306997	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	65306997	65306997	T	-	DEL	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	frame_shift_del	c.2580	p.K860fs	0.055	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				86	0	0	163	27	14.2105
PHF13	0	genome.wustl.edu	37	1	6680128	6680128	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	6680128	6680128	G	-	DEL	PHF13	ENST00000377648	human	ensembl	74_37	+1	known	frame_shift_del	c.407	p.G138fs	0.944	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF13	HGNC	ENSG00000116273				117	0	0	141	20	12.4224
SGIP1	0	genome.wustl.edu	37	1	67099769	67099769	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	67099769	67099769	A	-	DEL	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	frame_shift_del	c.106	p.K38fs	0.997	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				18	0	0	20	6	23.0769
GNG12	0	genome.wustl.edu	37	1	68171150	68171151	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	68171150	68171151	-	T	INS	GNG12	ENST00000370982	human	ensembl	74_37	-1	known	frame_shift_ins	c.203_202	p.T68fs	1.000:1.000	smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG12	HGNC	ENSG00000172380				95	0	0	189	21	10
LRRIQ3	0	genome.wustl.edu	37	1	74575213	74575213	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	74575213	74575213	T	-	DEL	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	frame_shift_del	c.732	p.K244fs	0.004	pfscan_IQ_motif_EF-hand-BS	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				61	0	0	121	20	14.1844
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74929169	74929170	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	74929169	74929170	-	T	INS	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	frame_shift_ins	c.2398_2399	p.G801fs	1.000:1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				241	0	0	322	39	10.8033
ODF2L	0	genome.wustl.edu	37	1	86826142	86826142	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	86826142	86826142	T	-	DEL	ODF2L	ENST00000317336	human	ensembl	74_37	-1	known	frame_shift_del	c.1221	p.K407fs	0.038	NULL	NULL	-	no_errors	ODF2L	HGNC	ENSG00000122417				57	0	0	68	9	11.6883
CCDC18	0	genome.wustl.edu	37	1	93667516	93667516	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	93667516	93667516	A	-	DEL	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	frame_shift_del	c.1120	p.V377fs	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				31	0	0	54	7	11.4754
ABCD3	0	genome.wustl.edu	37	1	94982785	94982785	+	RNA	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	1	94982785	94982785	A	-	DEL	ABCD3	ENST00000464165	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ABCD3	HGNC	ENSG00000117528				18	0	0	17	6	26.087
BTRC	0	genome.wustl.edu	37	10	103310573	103310573	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	103310573	103310573	C	-	DEL	BTRC	ENST00000370187	human	ensembl	74_37	+1	known	frame_shift_del	c.1774	p.R594fs	1.000	NULL	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167				114	0	0	138	20	12.6582
TIAL1	0	genome.wustl.edu	37	10	121335157	121335157	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	121335157	121335157	T	-	DEL	TIAL1	ENST00000463089	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	TIAL1	HGNC	ENSG00000151923				158	1	0.628931	278	55	16.5165
INPP5F	0	genome.wustl.edu	37	10	121551149	121551149	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	121551149	121551149	A	-	DEL	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	frame_shift_del	c.436	p.K147fs	1.000	pfam_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				73	0	0	133	7	5
TACC2	0	genome.wustl.edu	37	10	123844364	123844364	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	123844364	123844364	G	-	DEL	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	frame_shift_del	c.2349	p.E785fs	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				140	0	0	139	32	18.7135
FAM24A	0	genome.wustl.edu	37	10	124672308	124672308	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	124672308	124672308	A	-	DEL	FAM24A	ENST00000368894	human	ensembl	74_37	+1	known	frame_shift_del	c.156	p.N54fs	0.000	NULL	NULL	-	no_errors	FAM24A	HGNC	ENSG00000203795				109	0	0	160	18	10.1124
BCCIP	0	genome.wustl.edu	37	10	127520212	127520212	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	127520212	127520212	T	-	DEL	BCCIP	ENST00000463330	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BCCIP	HGNC	ENSG00000107949				44	0	0	60	11	15.493
MLLT10	0	genome.wustl.edu	37	10	21962452	21962452	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	21962452	21962452	G	-	DEL	MLLT10	ENST00000307729	human	ensembl	74_37	+1	known	frame_shift_del	c.1225	p.V411fs	0.999	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403				260	1	0.383142	378	52	12.093
MASTL	0	genome.wustl.edu	37	10	27459056	27459056	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	27459056	27459056	A	-	DEL	MASTL	ENST00000375940	human	ensembl	74_37	+1	known	frame_shift_del	c.1168	p.K391fs	0.077	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MASTL	HGNC	ENSG00000120539				91	0	0	163	17	9.44444
C10orf68	0	genome.wustl.edu	37	10	33018277	33018277	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	33018277	33018277	A	-	DEL	C10orf68	ENST00000375025	human	ensembl	74_37	+1	known	frame_shift_del	c.718	p.K242fs	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076				38	0	0	107	17	13.7097
CTNNA3	0	genome.wustl.edu	37	10	67680138	67680138	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	67680138	67680138	T	-	DEL	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	frame_shift_del	c.2638	p.I880fs	1.000	NULL	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				99	0	0	155	22	12.4294
CTNNA3	0	genome.wustl.edu	37	10	67680207	67680208	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	67680207	67680208	-	T	INS	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	frame_shift_ins	c.2569_2568	p.P856fs	1.000:0.996	pfam_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				109	0	0	198	26	11.6071
HERC4	0	genome.wustl.edu	37	10	69716603	69716604	+	RNA	DEL	AA	AA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	69716603	69716604	AA	-	DEL	HERC4	ENST00000480158	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HERC4	HGNC	ENSG00000148634				43	0	0	51	14	21.5385
SYNPO2L	0	genome.wustl.edu	37	10	75407589	75407589	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	75407589	75407589	G	-	DEL	SYNPO2L	ENST00000394810	human	ensembl	74_37	-1	known	frame_shift_del	c.1821	p.S608fs	0.013	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317				95	0	0	89	10	10.101
ZSWIM8	0	genome.wustl.edu	37	10	75560546	75560547	+	RNA	DEL	CC	CC	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	75560546	75560547	CC	-	DEL	ZSWIM8	ENST00000603195	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.749:0.797	-	-	-	no_errors	ZSWIM8	HGNC	ENSG00000214655				31	0	0	25	6	19.3548
GATA3	0	genome.wustl.edu	37	10	8115780	8115780	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	8115780	8115780	A	-	DEL	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	frame_shift_del	c.1129	p.V379fs	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				100	0	0	135	23	14.557
PANK1	0	genome.wustl.edu	37	10	91359120	91359120	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	91359120	91359120	T	-	DEL	PANK1	ENST00000307534	human	ensembl	74_37	-1	known	frame_shift_del	c.1199	p.K400fs	1.000	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK1	HGNC	ENSG00000152782				277	1	0.359712	348	50	12.5628
HECTD2	0	genome.wustl.edu	37	10	93247418	93247418	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	10	93247418	93247418	T	-	DEL	HECTD2	ENST00000498446	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HECTD2	HGNC	ENSG00000165338				73	0	0	105	12	10.2564
BIRC3	0	genome.wustl.edu	37	11	102195491	102195491	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	102195491	102195491	A	-	DEL	BIRC3	ENST00000263464	human	ensembl	74_37	+1	known	frame_shift_del	c.251	p.K85fs	0.989	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,pfam_CARD,superfamily_DEATH-like_dom,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC3	HGNC	ENSG00000023445				145	0	0	174	42	19.4444
CASP1	0	genome.wustl.edu	37	11	104901070	104901070	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	104901070	104901070	T	-	DEL	CASP1	ENST00000436863	human	ensembl	74_37	-1	known	frame_shift_del	c.614	p.N205fs	0.994	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP1	HGNC	ENSG00000137752				107	0	0	137	20	12.7389
AMPD3	0	genome.wustl.edu	37	11	10500145	10500145	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	10500145	10500145	C	-	DEL	AMPD3	ENST00000396553	human	ensembl	74_37	+1	known	frame_shift_del	c.294	p.P100fs	0.003	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805				375	1	0.265957	457	53	10.3922
ATM	0	genome.wustl.edu	37	11	108114817	108114817	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	108114817	108114817	T	-	DEL	ATM	ENST00000278616	human	ensembl	74_37	+1	known	frame_shift_del	c.634	p.S214fs	0.976	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				36	0	0	67	12	15.1899
DDX10	0	genome.wustl.edu	37	11	108544239	108544239	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	108544239	108544239	A	-	DEL	DDX10	ENST00000322536	human	ensembl	74_37	+1	known	frame_shift_del	c.232	p.T80fs	0.988	pfscan_RNA_helicase_DEAD_Q_motif	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105				41	0	0	56	12	17.6471
LAYN	0	genome.wustl.edu	37	11	111425991	111425991	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	111425991	111425991	A	-	DEL	LAYN	ENST00000375615	human	ensembl	74_37	+1	known	frame_shift_del	c.658	p.T222fs	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	LAYN	HGNC	ENSG00000204381				67	0	0	71	12	14.4578
NCAM1	0	genome.wustl.edu	37	11	113103872	113103872	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	113103872	113103872	C	-	DEL	NCAM1	ENST00000316851	human	ensembl	74_37	+1	known	frame_shift_del	c.1496	p.S501fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM1	HGNC	ENSG00000149294				78	0	0	57	13	18.5714
NLRX1	0	genome.wustl.edu	37	11	119044381	119044381	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	119044381	119044381	C	-	DEL	NLRX1	ENST00000292199	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.P143fs	0.010	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703				84	0	0	72	17	19.1011
OR8D4	0	genome.wustl.edu	37	11	123777442	123777442	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	123777442	123777442	T	-	DEL	OR8D4	ENST00000321355	human	ensembl	74_37	+1	known	frame_shift_del	c.304	p.F104fs	0.939	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D4	HGNC	ENSG00000181518				250	1	0.398406	346	46	11.7347
CCDC15	0	genome.wustl.edu	37	11	124845049	124845049	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	124845049	124845049	A	-	DEL	CCDC15	ENST00000344762	human	ensembl	74_37	+1	known	frame_shift_del	c.574	p.K194fs	0.000	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548				24	0	0	53	7	11.6667
C11orf45	0	genome.wustl.edu	37	11	128774338	128774338	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	128774338	128774338	C	-	DEL	C11orf45	ENST00000310799	human	ensembl	74_37	-1	known	frame_shift_del	c.124	p.V42fs	0.000	NULL	NULL	-	no_errors	C11orf45	HGNC	ENSG00000174370				188	0	0	218	38	14.8438
PDE3B	0	genome.wustl.edu	37	11	14880717	14880717	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	14880717	14880717	T	-	DEL	PDE3B	ENST00000282096	human	ensembl	74_37	+1	known	frame_shift_del	c.2649	p.L885fs	0.996	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270				50	0	0	100	21	17.3554
BDNF	0	genome.wustl.edu	37	11	27679518	27679519	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	27679518	27679519	-	C	INS	BDNF	ENST00000438929	human	ensembl	74_37	-1	known	frame_shift_ins	c.840_839	p.I281fs	1.000:1.000	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Brain-der_neurotrophic_factor,prints_Nerve_growth_factor-rel	-	no_errors	BDNF	HGNC	ENSG00000176697				224	0	0	291	43	12.8743
CCDC73	0	genome.wustl.edu	37	11	32635951	32635951	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	32635951	32635951	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.1913	p.N638fs	0.024	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				22	0	0	38	10	20.8333
HIPK3	0	genome.wustl.edu	37	11	33358692	33358693	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	33358692	33358693	-	T	INS	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	frame_shift_ins	c.1293_1294	p.C433fs	1.000:1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				33	0	0	63	4	5.97015
TRIM51HP	0	genome.wustl.edu	37	11	55065032	55065032	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	55065032	55065032	T	-	DEL	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007				36	0	0	77	14	15.3846
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				53	0	0	100	15	13.0435
VWCE	0	genome.wustl.edu	37	11	61044093	61044094	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	61044093	61044094	-	G	INS	VWCE	ENST00000335613	human	ensembl	74_37	-1	known	frame_shift_ins	c.1467_1466	p.Q490fs	0.003:0.008	smart_VWC_out,smart_VWF_C	pfam_VWF_C,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWF_C,smart_VWC_out,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	VWCE	HGNC	ENSG00000167992				38	0	0	41	6	12.766
EML3	0	genome.wustl.edu	37	11	62377133	62377133	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	62377133	62377133	C	-	DEL	EML3	ENST00000529309	human	ensembl	74_37	-1	known	frame_shift_del	c.602	p.G201fs	0.998	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML3	HGNC	ENSG00000149499				352	0	0	524	73	12.2278
RARRES3	0	genome.wustl.edu	37	11	63313709	63313709	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	63313709	63313709	A	-	DEL	RARRES3	ENST00000255688	human	ensembl	74_37	+1	known	frame_shift_del	c.476	p.A162fs	0.001	NULL	pfam_LRAT-like_dom	-	no_errors	RARRES3	HGNC	ENSG00000133321				234	0	0	297	57	16.1017
RTN3	0	genome.wustl.edu	37	11	63525656	63525656	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	63525656	63525656	A	-	DEL	RTN3	ENST00000377819	human	ensembl	74_37	+1	known	frame_shift_del	c.3082	p.K1030fs	1.000	pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				48	0	0	65	17	20.7317
MALAT1	0	genome.wustl.edu	37	11	65272060	65272060	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	65272060	65272060	T	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.084	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				25	0	0	43	7	14
LTBP3	0	genome.wustl.edu	37	11	65314283	65314283	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	65314283	65314283	C	-	DEL	LTBP3	ENST00000301873	human	ensembl	74_37	-1	known	frame_shift_del	c.2216	p.G739fs	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP3	HGNC	ENSG00000168056				97	0	0	72	20	21.7391
POLD3	0	genome.wustl.edu	37	11	74336609	74336609	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	74336609	74336609	A	-	DEL	POLD3	ENST00000263681	human	ensembl	74_37	+1	known	frame_shift_del	c.890	p.R300fs	0.998	pfam_DNA_polymerase_subunit_Cdc27	pfam_DNA_polymerase_subunit_Cdc27	-	no_errors	POLD3	HGNC	ENSG00000077514				41	0	0	53	10	15.873
ENSG00000254420	0	genome.wustl.edu	37	11	78154811	78154813	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	11	78154811	78154813	AAA	-	DEL	ENSG00000254420	ENST00000534168	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.006:0.000	-	-	-	no_errors	RP11-452H21.1	Clone_based_vega_gene	ENSG00000254420				40	0	0	33	3	8.33333
PAH	0	genome.wustl.edu	37	12	103310938	103310938	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	103310938	103310938	T	-	DEL	PAH	ENST00000547319	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PAH	HGNC	ENSG00000171759				55	0	0	37	18	32.7273
TAS2R8	0	genome.wustl.edu	37	12	10959322	10959322	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	10959322	10959322	A	-	DEL	TAS2R8	ENST00000240615	human	ensembl	74_37	-1	known	frame_shift_del	c.258	p.F86fs	0.000	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAS2R8	HGNC	ENSG00000121314				95	0	0	197	20	9.21659
ANKRD13A	0	genome.wustl.edu	37	12	110468565	110468566	+	Splice_Site	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	110468565	110468566	-	A	INS	ANKRD13A	ENST00000261739	human	ensembl	74_37	+1	known	splice_site_ins	c.1348+2_1348+1	e12+2	1.000:0.873	-	-	-	no_errors	ANKRD13A	HGNC	ENSG00000076513				27	0	0	33	9	21.4286
DNAH10	0	genome.wustl.edu	37	12	124256216	124256217	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	124256216	124256217	AA	-	DEL	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	frame_shift_del	c.184_185	p.K62fs	0.001:0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				33	0	0	59	16	21.3333
APOLD1	0	genome.wustl.edu	37	12	12938628	12938635	+	Frame_Shift_Del	DEL	GGTAAGTG	GGTAAGTG	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	GGTAAGTG	GGTAAGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	12938628	12938635	GGTAAGTG	-	DEL	APOLD1	ENST00000356591	human	ensembl	74_37	+1	known	frame_shift_del	c.3	p.G2fs	0.994	NULL	pfam_ApoL	-	no_errors	APOLD1	HGNC	ENSG00000178878				100	0	0	146	14	8.75
TMEM132D	0	genome.wustl.edu	37	12	130184704	130184705	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	130184704	130184705	-	G	INS	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	frame_shift_ins	c.619_618	p.T206fs	0.073:0.027	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				65	0	0	91	10	9.90099
EP400	0	genome.wustl.edu	37	12	132475215	132475215	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	132475215	132475215	A	-	DEL	EP400	ENST00000333577	human	ensembl	74_37	+1	known	frame_shift_del	c.2693	p.R900fs	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				64	0	0	141	24	14.5455
RECQL	0	genome.wustl.edu	37	12	21644547	21644547	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	21644547	21644547	T	-	DEL	RECQL	ENST00000421138	human	ensembl	74_37	-1	known	frame_shift_del	c.120	p.V41fs	0.001	NULL	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700				34	0	0	65	16	19.7531
FKBP4	0	genome.wustl.edu	37	12	2907011	2907011	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	2907011	2907011	C	-	DEL	FKBP4	ENST00000001008	human	ensembl	74_37	+1	known	frame_shift_del	c.367	p.N125fs	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP4	HGNC	ENSG00000004478				201	0	0	245	22	8.2397
GXYLT1	0	genome.wustl.edu	37	12	42499815	42499816	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	42499815	42499816	-	A	INS	GXYLT1	ENST00000398675	human	ensembl	74_37	-1	known	frame_shift_ins	c.669_668	p.L223fs	0.997:1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233				57	0	0	87	22	20.1835
KMT2D	0	genome.wustl.edu	37	12	49445500	49445500	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	49445500	49445500	G	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.1966	p.L656fs	0.001	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				139	0	0	129	43	25
MAP3K12	0	genome.wustl.edu	37	12	53874984	53874985	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	53874984	53874985	-	G	INS	MAP3K12	ENST00000267079	human	ensembl	74_37	-1	known	frame_shift_ins	c.2562_2561	p.A855fs	0.994:1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625				52	0	0	67	13	16.25
CBX5	0	genome.wustl.edu	37	12	54645832	54645832	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	54645832	54645832	T	-	DEL	CBX5	ENST00000209875	human	ensembl	74_37	-1	known	frame_shift_del	c.317	p.K106fs	1.000	superfamily_Chromodomain-like	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX5	HGNC	ENSG00000094916				133	0	0	325	33	9.21788
OR6C75	0	genome.wustl.edu	37	12	55759486	55759486	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	55759486	55759486	T	-	DEL	OR6C75	ENST00000343399	human	ensembl	74_37	+1	known	frame_shift_del	c.592	p.L200fs	0.582	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C75	HGNC	ENSG00000187857				68	0	0	119	41	25.625
BAZ2A	0	genome.wustl.edu	37	12	57008974	57008974	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	57008974	57008974	A	-	DEL	BAZ2A	ENST00000551812	human	ensembl	74_37	-1	known	frame_shift_del	c.560	p.F187fs	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108				51	0	0	59	8	11.9403
LEPREL2	0	genome.wustl.edu	37	12	6939061	6939063	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	6939061	6939063	CTT	-	DEL	LEPREL2	ENST00000396725	human	ensembl	74_37	+1	known	in_frame_del	c.534_536	p.F180in_frame_del	1.000:1.000:1.000	NULL	smart_Pro_4_hyd_alph	-	no_errors	LEPREL2	HGNC	ENSG00000110811				232	0	0	285	88	23.5925
E2F7	0	genome.wustl.edu	37	12	77419717	77419717	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	77419717	77419717	G	-	DEL	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	frame_shift_del	c.2186	p.P729fs	0.000	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				21	0	0	47	12	20.339
TMTC2	0	genome.wustl.edu	37	12	83444732	83444732	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	83444732	83444732	A	-	DEL	TMTC2	ENST00000321196	human	ensembl	74_37	+1	known	frame_shift_del	c.2202	p.A737fs	1.000	pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104				34	0	0	61	11	15.2778
EEA1	0	genome.wustl.edu	37	12	93172940	93172940	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	93172940	93172940	T	-	DEL	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	frame_shift_del	c.3605	p.K1202fs	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189				121	0	0	233	27	10.3846
NDUFA12	0	genome.wustl.edu	37	12	95387988	95387988	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	12	95387988	95387988	T	-	DEL	NDUFA12	ENST00000327772	human	ensembl	74_37	-1	known	frame_shift_del	c.215	p.N72fs	0.995	NULL	NULL	-	no_errors	NDUFA12	HGNC	ENSG00000184752				52	0	0	87	25	22.3214
COL4A2	0	genome.wustl.edu	37	13	111114439	111114439	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	111114439	111114439	T	-	DEL	COL4A2	ENST00000478681	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COL4A2	HGNC	ENSG00000134871				50	0	0	36	14	28
CDC16	0	genome.wustl.edu	37	13	115012591	115012591	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	115012591	115012591	T	-	DEL	CDC16	ENST00000494581	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CDC16	HGNC	ENSG00000130177				10	0	0	9	4	30.7692
USPL1	0	genome.wustl.edu	37	13	31231961	31231962	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	31231961	31231962	-	T	INS	USPL1	ENST00000255304	human	ensembl	74_37	+1	known	frame_shift_ins	c.1747_1748	p.L584fs	0.000:0.010	NULL	pfscan_Peptidase_C19/C67	-	no_errors	USPL1	HGNC	ENSG00000132952				87	0	0	165	10	5.71429
RFC3	0	genome.wustl.edu	37	13	34398063	34398063	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	34398063	34398063	A	-	DEL	RFC3	ENST00000380071	human	ensembl	74_37	+1	known	frame_shift_del	c.235	p.I82fs	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC3	HGNC	ENSG00000133119				11	0	0	28	7	20
UTP14C	0	genome.wustl.edu	37	13	52603836	52603836	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	52603836	52603836	A	-	DEL	UTP14C	ENST00000521776	human	ensembl	74_37	+1	known	frame_shift_del	c.896	p.N300fs	1.000	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14C	HGNC	ENSG00000253797				189	0	0	214	31	12.6531
LMO7	0	genome.wustl.edu	37	13	76432174	76432174	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	76432174	76432174	T	-	DEL	LMO7	ENST00000605961	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LMO7	HGNC	ENSG00000136153				33	0	0	41	5	10.8696
MYCBP2	0	genome.wustl.edu	37	13	77641917	77641917	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	77641917	77641917	G	-	DEL	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	frame_shift_del	c.12254	p.P4085fs	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				152	0	0	256	38	12.9252
MYCBP2	0	genome.wustl.edu	37	13	77900636	77900636	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	77900636	77900636	C	-	DEL	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	frame_shift_del	c.275	p.G92fs	1.000	NULL	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				45	0	0	63	8	11.2676
UGGT2	0	genome.wustl.edu	37	13	96513045	96513045	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	13	96513045	96513045	A	-	DEL	UGGT2	ENST00000376747	human	ensembl	74_37	-1	known	frame_shift_del	c.3737	p.L1246fs	1.000	pfam_Glyco_trans_8	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595				24	0	0	43	11	20.3704
RPGRIP1	0	genome.wustl.edu	37	14	21794313	21794313	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	21794313	21794313	A	-	DEL	RPGRIP1	ENST00000206660	human	ensembl	74_37	+1	known	frame_shift_del	c.2691	p.N899fs	0.956	superfamily_C2_dom	pfam_DUF3250,superfamily_C2_dom	-	no_errors	RPGRIP1	HGNC	ENSG00000092200				42	0	0	52	9	14.7541
OR10G2	0	genome.wustl.edu	37	14	22102924	22102925	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	22102924	22102925	-	G	INS	OR10G2	ENST00000542433	human	ensembl	74_37	-1	known	frame_shift_ins	c.75_74	p.N26fs	0.000:0.048	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G2	HGNC	ENSG00000255582				147	0	0	194	28	12.6126
MIS18BP1	0	genome.wustl.edu	37	14	45716019	45716019	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	45716019	45716019	T	-	DEL	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	frame_shift_del	c.471	p.K157fs	0.001	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				64	0	0	124	24	16.2162
PRKCH	0	genome.wustl.edu	37	14	62016563	62016564	+	RNA	DEL	GA	GA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	62016563	62016564	GA	-	DEL	PRKCH	ENST00000536400	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PRKCH	HGNC	ENSG00000027075				71	0	0	112	18	13.8462
ENSG00000259648	0	genome.wustl.edu	37	14	68082827	68082827	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	68082827	68082827	T	-	DEL	ENSG00000259648	ENST00000559968	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.976	-	-	-	no_errors	RP11-643G16.4	Clone_based_vega_gene	ENSG00000259648				46	0	0	83	16	16.1616
GALNT16	0	genome.wustl.edu	37	14	69800300	69800300	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	69800300	69800300	G	-	DEL	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	frame_shift_del	c.950	p.G319fs	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626				65	0	0	68	10	12.8205
SERPINA13P	0	genome.wustl.edu	37	14	95108124	95108124	+	RNA	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	14	95108124	95108124	A	-	DEL	SERPINA13P	ENST00000469935	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	SERPINA13P	HGNC	ENSG00000187483				185	0	0	211	33	13.5246
SNORD116-2	0	genome.wustl.edu	37	15	25299376	25299377	+	RNA	DEL	AA	AA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	25299376	25299377	AA	-	DEL	SNORD116-2	ENST00000384274	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SNORD116-2	HGNC	ENSG00000207001				176	0	0	249	43	14.726
GJD2	0	genome.wustl.edu	37	15	35045250	35045250	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	35045250	35045250	C	-	DEL	GJD2	ENST00000290374	human	ensembl	74_37	-1	known	frame_shift_del	c.395	p.G132fs	1.000	prints_Connexin36	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin36	-	no_errors	GJD2	HGNC	ENSG00000159248				209	0	0	235	42	15.1625
MYO5A	0	genome.wustl.edu	37	15	52620058	52620058	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	52620058	52620058	T	-	DEL	MYO5A	ENST00000358212	human	ensembl	74_37	-1	known	frame_shift_del	c.4701	p.V1568fs	1.000	pfscan_Dilute	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535				138	0	0	288	45	13.5135
ZNF609	0	genome.wustl.edu	37	15	64967247	64967247	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	64967247	64967247	A	-	DEL	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	frame_shift_del	c.2194	p.K734fs	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				284	1	0.350877	283	65	18.6782
BLM	0	genome.wustl.edu	37	15	91292793	91292794	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	91292793	91292794	AC	-	DEL	BLM	ENST00000355112	human	ensembl	74_37	+1	known	frame_shift_del	c.295_296	p.Q100fs	0.001:0.000	NULL	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299				95	0	0	104	24	18.75
SLCO3A1	0	genome.wustl.edu	37	15	92706441	92706441	+	RNA	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	15	92706441	92706441	A	-	DEL	SLCO3A1	ENST00000555549	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.813	-	-	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				51	0	0	66	13	16.4557
SMG1	0	genome.wustl.edu	37	16	18937310	18937312	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	18937310	18937312	GCC	-	DEL	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	in_frame_del	c.54_52	p.G18in_frame_del	1.000:1.000:1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				22	0	0	18	3	14.2857
ZKSCAN2	0	genome.wustl.edu	37	16	25255311	25255311	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	25255311	25255311	G	-	DEL	ZKSCAN2	ENST00000328086	human	ensembl	74_37	-1	known	frame_shift_del	c.1776	p.S593fs	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN2	HGNC	ENSG00000155592				99	0	0	144	17	10.559
GTF3C1	0	genome.wustl.edu	37	16	27549671	27549671	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	27549671	27549671	C	-	DEL	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	frame_shift_del	c.438	p.K147fs	0.737	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				131	0	0	111	14	11.2
SEZ6L2	0	genome.wustl.edu	37	16	29891249	29891249	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	29891249	29891249	G	-	DEL	SEZ6L2	ENST00000308713	human	ensembl	74_37	-1	known	frame_shift_del	c.1509	p.N504fs	0.998	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938				329	0	0	341	36	9.54907
ITFG3	0	genome.wustl.edu	37	16	304498	304499	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	304498	304499	-	A	INS	ITFG3	ENST00000301678	human	ensembl	74_37	+1	known	frame_shift_ins	c.86_87	p.N31fs	0.000:0.000	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	ITFG3	HGNC	ENSG00000167930				225	0	0	323	56	14.7757
CREBBP	0	genome.wustl.edu	37	16	3781324	3781326	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	3781324	3781326	AGG	-	DEL	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	in_frame_del	c.5041_5039	p.S1680in_frame_del	0.602:0.536:1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				38	0	0	40	7	14.8936
CREBBP	0	genome.wustl.edu	37	16	3789590	3789591	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	3789590	3789591	-	G	INS	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	frame_shift_ins	c.4269_4268	p.P1424fs	0.957:0.998	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				78	0	0	81	7	7.95455
NLRC5	0	genome.wustl.edu	37	16	57060196	57060196	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	57060196	57060196	C	-	DEL	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	frame_shift_del	c.1341	p.P449fs	0.900	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				122	0	0	105	14	11.7647
TK2	0	genome.wustl.edu	37	16	66547656	66547656	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	66547656	66547656	A	-	DEL	TK2	ENST00000299697	human	ensembl	74_37	-1	known	frame_shift_del	c.803	p.F268fs	0.741	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase	-	no_errors	TK2	HGNC	ENSG00000166548				62	0	0	65	11	14.4737
FAM65A	0	genome.wustl.edu	37	16	67575786	67575788	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	67575786	67575788	AGG	-	DEL	FAM65A	ENST00000422602	human	ensembl	74_37	+1	known	in_frame_del	c.1157_1159	p.E388in_frame_del	1.000:1.000:1.000	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523				129	0	0	126	15	10.6383
CTCF	0	genome.wustl.edu	37	16	67645339	67645339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	67645339	67645339	A	-	DEL	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.T204fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				90	0	0	111	26	18.9781
ESRP2	0	genome.wustl.edu	37	16	68264442	68264442	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	68264442	68264442	G	-	DEL	ESRP2	ENST00000565858	human	ensembl	74_37	-1	known	frame_shift_del	c.1944	p.T649fs	0.467	NULL	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067				104	0	0	95	10	9.52381
HYDIN	0	genome.wustl.edu	37	16	70972629	70972630	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	70972629	70972630	-	TG	INS	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	frame_shift_ins	c.6883_6882	p.E2294fs	0.997:0.077	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				57	0	0	68	6	8.10811
DNAAF1	0	genome.wustl.edu	37	16	84209824	84209824	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	84209824	84209824	C	-	DEL	DNAAF1	ENST00000378553	human	ensembl	74_37	+1	known	frame_shift_del	c.1984	p.T664fs	0.000	NULL	NULL	-	no_errors	DNAAF1	HGNC	ENSG00000154099				77	0	0	90	8	8.16327
FOXC2	0	genome.wustl.edu	37	16	86601500	86601500	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	86601500	86601500	C	-	DEL	FOXC2	ENST00000320354	human	ensembl	74_37	+1	known	frame_shift_del	c.559	p.P188fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXC2	HGNC	ENSG00000176692				100	0	0	94	11	10.4762
ZC3H18	0	genome.wustl.edu	37	16	88691140	88691141	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	16	88691140	88691141	-	C	INS	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	frame_shift_ins	c.2029_2030	p.R680fs	0.978:0.568	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				41	0	0	49	7	12.5
MYH2	0	genome.wustl.edu	37	17	10446227	10446228	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	10446227	10446228	-	A	INS	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	frame_shift_ins	c.869_868	p.Y290fs	1.000:1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				33	0	0	51	6	10.5263
MYOCD	0	genome.wustl.edu	37	17	12642606	12642606	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	12642606	12642606	C	-	DEL	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	frame_shift_del	c.678	p.S229fs	0.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				103	0	0	94	18	16.0714
NLK	0	genome.wustl.edu	37	17	26449740	26449740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	26449740	26449740	T	-	DEL	NLK	ENST00000407008	human	ensembl	74_37	+1	known	frame_shift_del	c.570	p.F192fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NLK	HGNC	ENSG00000087095				90	0	0	152	23	13.1429
EFCAB5	0	genome.wustl.edu	37	17	28296061	28296061	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	28296061	28296061	A	-	DEL	EFCAB5	ENST00000394835	human	ensembl	74_37	+1	known	frame_shift_del	c.443	p.K150fs	0.000	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB5	HGNC	ENSG00000176927				19	0	0	31	7	18.4211
RAD51D	0	genome.wustl.edu	37	17	33445634	33445645	+	Frame_Shift_Del	DEL	AGGGCCTGCCAA	AGGGCCTGCCAA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AGGGCCTGCCAA	AGGGCCTGCCAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	33445634	33445645	AGGGCCTGCCAA	-	DEL	RAD51D	ENST00000345365	human	ensembl	74_37	-1	known	frame_shift_del	c.149_145	p.A49fs	1.000:1.000:1.000:1.000:1.000	pirsf_DNA_recomb/repair_RecA-like	pfam_DNA_recomb/repair_Rad51_C,pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	RAD51D	HGNC	ENSG00000185379				105	0	0	127	9	6.61765
ITGAE	0	genome.wustl.edu	37	17	3646898	3646900	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	3646898	3646900	TCC	-	DEL	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	in_frame_del	c.2333_2331	p.E777in_frame_del	0.989:0.959:0.667	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAE	HGNC	ENSG00000083457				281	0	0	303	38	11.1437
SRCIN1	0	genome.wustl.edu	37	17	36708254	36708254	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	36708254	36708254	G	-	DEL	SRCIN1	ENST00000264659	human	ensembl	74_37	-1	known	frame_shift_del	c.2595	p.S866fs	0.998	NULL	pfam_AIP3_C	-	no_errors	SRCIN1	HGNC	ENSG00000017373				95	0	0	119	21	15
ZZEF1	0	genome.wustl.edu	37	17	3919623	3919625	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	3919623	3919625	GTT	-	DEL	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	in_frame_del	c.8139_8137	p.N2713in_frame_del	1.000:1.000:1.000	superfamily_CUB_dom	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				172	0	0	174	14	7.44681
KANSL1	0	genome.wustl.edu	37	17	44109601	44109601	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	44109601	44109601	G	-	DEL	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	frame_shift_del	c.2902	p.Q968fs	0.999	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				103	0	0	166	35	17.4129
HOXB3	0	genome.wustl.edu	37	17	46628219	46628219	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	46628219	46628219	C	-	DEL	HOXB3	ENST00000311626	human	ensembl	74_37	-1	known	frame_shift_del	c.773	p.G258fs	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093				219	0	0	215	31	12.6016
XYLT2	0	genome.wustl.edu	37	17	48431304	48431304	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	48431304	48431304	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.449	p.Q152fs	1.000	NULL	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				63	0	0	71	6	7.79221
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				128	1	0.775194	148	20	11.9048
COIL	0	genome.wustl.edu	37	17	55028118	55028118	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	55028118	55028118	T	-	DEL	COIL	ENST00000240316	human	ensembl	74_37	-1	known	frame_shift_del	c.485	p.N162fs	0.013	NULL	NULL	-	no_errors	COIL	HGNC	ENSG00000121058				93	0	0	156	24	13.3333
CEP95	0	genome.wustl.edu	37	17	62517549	62517549	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	62517549	62517549	A	-	DEL	CEP95	ENST00000556440	human	ensembl	74_37	+1	known	frame_shift_del	c.619	p.A209fs	0.255	NULL	superfamily_CH-domain	-	no_errors	CEP95	HGNC	ENSG00000258890				18	0	0	44	7	13.7255
PRKCA	0	genome.wustl.edu	37	17	64683239	64683239	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	64683239	64683239	A	-	DEL	PRKCA	ENST00000413366	human	ensembl	74_37	+1	known	frame_shift_del	c.540	p.N182fs	0.999	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCA	HGNC	ENSG00000154229				98	0	0	170	24	12.3711
UNC13D	0	genome.wustl.edu	37	17	73838636	73838637	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	73838636	73838637	-	C	INS	UNC13D	ENST00000412096	human	ensembl	74_37	-1	known	frame_shift_ins	c.447_446	p.S150fs	0.970:0.346	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	UNC13D	HGNC	ENSG00000092929				129	0	0	122	19	13.4752
EFNB3	0	genome.wustl.edu	37	17	7611436	7611436	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	17	7611436	7611436	C	-	DEL	EFNB3	ENST00000226091	human	ensembl	74_37	+1	known	frame_shift_del	c.283	p.P96fs	0.825	pfam_Ephrin,superfamily_Cupredoxin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947				159	0	0	218	32	12.8
C18orf8	0	genome.wustl.edu	37	18	21111681	21111681	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	21111681	21111681	T	-	DEL	C18orf8	ENST00000591367	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C18orf8	HGNC	ENSG00000141452				90	0	0	174	21	10.7692
KLHL14	0	genome.wustl.edu	37	18	30350355	30350355	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	30350355	30350355	G	-	DEL	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	frame_shift_del	c.200	p.P67fs	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				67	0	0	49	6	10.9091
SYT4	0	genome.wustl.edu	37	18	40857246	40857246	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	40857246	40857246	T	-	DEL	SYT4	ENST00000255224	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872				97	0	0	120	9	6.97674
PIAS2	0	genome.wustl.edu	37	18	44444173	44444174	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	44444173	44444174	-	A	INS	PIAS2	ENST00000585916	human	ensembl	74_37	-1	known	frame_shift_ins	c.538_537	p.I179fs	1.000:1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS2	HGNC	ENSG00000078043				52	0	0	74	13	14.9425
MBD2	0	genome.wustl.edu	37	18	51729376	51729376	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	51729376	51729376	G	-	DEL	MBD2	ENST00000583046	human	ensembl	74_37	-1	known	frame_shift_del	c.799	p.L267fs	0.956	NULL	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD2	HGNC	ENSG00000134046				269	0	0	278	30	9.74026
DSEL	0	genome.wustl.edu	37	18	65178797	65178798	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	65178797	65178798	-	A	INS	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	frame_shift_ins	c.3079_3078	p.Q1026fs	1.000:1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				117	0	0	188	25	11.7371
LAMA1	0	genome.wustl.edu	37	18	6975037	6975038	+	Splice_Site	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	18	6975037	6975038	-	G	INS	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	splice_site_ins	c.6490-3_6490-2	e46-2	1.000:0.972	-	-	-	no_errors	LAMA1	HGNC	ENSG00000101680				31	0	0	29	7	19.4444
JUNB	0	genome.wustl.edu	37	19	12902925	12902925	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	12902925	12902925	G	-	DEL	JUNB	ENST00000302754	human	ensembl	74_37	+1	known	frame_shift_del	c.340	p.G115fs	1.000	pfam_JNK	pfam_JNK,pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUNB	HGNC	ENSG00000171223				20	0	0	21	6	22.2222
BRD4	0	genome.wustl.edu	37	19	15376248	15376248	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	15376248	15376248	G	-	DEL	BRD4	ENST00000263377	human	ensembl	74_37	-1	known	frame_shift_del	c.766	p.Q256fs	0.998	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				37	0	0	40	6	13.0435
TMEM38A	0	genome.wustl.edu	37	19	16791226	16791226	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	16791226	16791226	C	-	DEL	TMEM38A	ENST00000187762	human	ensembl	74_37	+1	known	frame_shift_del	c.300	p.L102fs	1.000	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38A	HGNC	ENSG00000072954				598	0	0	855	109	11.3071
MYO9B	0	genome.wustl.edu	37	19	17322706	17322706	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	17322706	17322706	C	-	DEL	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	frame_shift_del	c.6061	p.P2022fs	0.996	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				40	0	0	50	7	12.2807
MRPL34	0	genome.wustl.edu	37	19	17403453	17403453	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	17403453	17403453	C	-	DEL	MRPL34	ENST00000595444	human	ensembl	74_37	+1	putative	frame_shift_del	c.4	p.R3fs	0.054	NULL	pfam_Ribosomal_L34,tigrfam_Ribosomal_L34	-	no_errors	MRPL34	HGNC	ENSG00000130312				27	0	0	21	4	16
PLVAP	0	genome.wustl.edu	37	19	17488051	17488051	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	17488051	17488051	C	-	DEL	PLVAP	ENST00000252590	human	ensembl	74_37	-1	known	frame_shift_del	c.47	p.G16fs	0.000	pfam_PV-1	pfam_PV-1	-	no_errors	PLVAP	HGNC	ENSG00000130300				201	1	0.49505	247	42	14.5329
KLHL26	0	genome.wustl.edu	37	19	18779306	18779306	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	18779306	18779306	G	-	DEL	KLHL26	ENST00000300976	human	ensembl	74_37	+1	known	frame_shift_del	c.1099	p.Q369fs	0.998	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487				56	0	0	56	5	8.19672
HAPLN4	0	genome.wustl.edu	37	19	19369444	19369444	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	19369444	19369444	C	-	DEL	HAPLN4	ENST00000291481	human	ensembl	74_37	-1	known	frame_shift_del	c.705	p.T236fs	0.168	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN4	HGNC	ENSG00000187664				51	0	0	55	11	16.6667
SLC39A3	0	genome.wustl.edu	37	19	2733111	2733111	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	2733111	2733111	C	-	DEL	SLC39A3	ENST00000269740	human	ensembl	74_37	-1	known	frame_shift_del	c.583	p.E195fs	0.988	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A3	HGNC	ENSG00000141873				158	0	0	144	25	14.7929
URI1	0	genome.wustl.edu	37	19	30496293	30496293	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	30496293	30496293	A	-	DEL	URI1	ENST00000542441	human	ensembl	74_37	+1	known	frame_shift_del	c.393	p.V134fs	0.993	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin	-	no_errors	URI1	HGNC	ENSG00000105176				43	0	0	69	11	13.75
KMT2B	0	genome.wustl.edu	37	19	36224731	36224731	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	36224731	36224731	C	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_del	c.7117	p.P2374fs	0.974	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				85	0	0	103	8	7.20721
APBA3	0	genome.wustl.edu	37	19	3752611	3752611	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	3752611	3752611	C	-	DEL	APBA3	ENST00000316757	human	ensembl	74_37	-1	known	frame_shift_del	c.1290	p.P431fs	0.295	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA3	HGNC	ENSG00000011132				16	0	0	25	2	7.40741
ZNF570	0	genome.wustl.edu	37	19	37975121	37975122	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	37975121	37975122	-	A	INS	ZNF570	ENST00000330173	human	ensembl	74_37	+1	known	frame_shift_ins	c.597_598	p.N201fs	0.003:0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF570	HGNC	ENSG00000171827				192	0	0	347	58	14.321
PRX	0	genome.wustl.edu	37	19	40900062	40900062	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	40900062	40900062	G	-	DEL	PRX	ENST00000324001	human	ensembl	74_37	-1	known	frame_shift_del	c.4197	p.K1400fs	0.764	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227				160	0	0	174	25	12.5628
SEMA6B	0	genome.wustl.edu	37	19	4552597	4552597	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	4552597	4552597	G	-	DEL	SEMA6B	ENST00000301293	human	ensembl	74_37	-1	known	frame_shift_del	c.826	p.R276fs	0.999	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6B	HGNC	ENSG00000167680				82	0	0	83	8	8.79121
GLTSCR1	0	genome.wustl.edu	37	19	48197891	48197892	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	48197891	48197892	CC	-	DEL	GLTSCR1	ENST00000396720	human	ensembl	74_37	+1	known	frame_shift_del	c.2803_2804	p.P937fs	0.226:0.347	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169				37	0	0	56	10	15.1515
BAX	0	genome.wustl.edu	37	19	49458971	49458971	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	49458971	49458971	G	-	DEL	BAX	ENST00000293288	human	ensembl	74_37	+1	known	frame_shift_del	c.114	p.E41fs	0.588	NULL	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAX	HGNC	ENSG00000087088				86	0	0	104	38	26.7606
TRPM4	0	genome.wustl.edu	37	19	49686068	49686069	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	49686068	49686069	-	C	INS	TRPM4	ENST00000252826	human	ensembl	74_37	+1	known	frame_shift_ins	c.1497_1498	p.D501fs	0.000:0.002	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529				47	0	0	54	10	15.625
TEAD2	0	genome.wustl.edu	37	19	49850473	49850473	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	49850473	49850473	G	-	DEL	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	frame_shift_del	c.883	p.H295fs	0.961	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				296	0	0	393	55	12.2768
ALDH16A1	0	genome.wustl.edu	37	19	49965948	49965948	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	49965948	49965948	G	-	DEL	ALDH16A1	ENST00000293350	human	ensembl	74_37	+1	known	frame_shift_del	c.1034	p.A347fs	0.045	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	-	no_errors	ALDH16A1	HGNC	ENSG00000161618				78	0	0	55	11	16.6667
SCAF1	0	genome.wustl.edu	37	19	50161575	50161575	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	50161575	50161575	C	-	DEL	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	frame_shift_del	c.3858	p.P1288fs	0.960	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				22	0	0	30	6	16.6667
AP2A1	0	genome.wustl.edu	37	19	50304646	50304647	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	50304646	50304647	-	C	INS	AP2A1	ENST00000354293	human	ensembl	74_37	+1	known	frame_shift_ins	c.1555_1554	p.V522fs	1.000:1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961				103	0	0	86	14	14
ZNF473	0	genome.wustl.edu	37	19	50549329	50549330	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	50549329	50549330	-	T	INS	ZNF473	ENST00000270617	human	ensembl	74_37	+1	known	frame_shift_ins	c.1629_1630	p.V545fs	0.000:0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528				95	0	0	162	26	13.8298
PTPRS	0	genome.wustl.edu	37	19	5231528	5231528	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	5231528	5231528	C	-	DEL	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	frame_shift_del	c.1951	p.A651fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				45	0	0	48	11	18.6441
PTPRS	0	genome.wustl.edu	37	19	5231611	5231611	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	5231611	5231611	G	-	DEL	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	frame_shift_del	c.1868	p.P623fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				17	0	0	23	2	8
ZNF816	0	genome.wustl.edu	37	19	53453423	53453423	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	53453423	53453423	T	-	DEL	ZNF816	ENST00000357666	human	ensembl	74_37	-1	known	frame_shift_del	c.1605	p.K535fs	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF816	HGNC	ENSG00000180257				116	0	0	197	19	8.7963
ZNF347	0	genome.wustl.edu	37	19	53643876	53643876	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	53643876	53643876	T	-	DEL	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	frame_shift_del	c.2208	p.K736fs	0.002	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937				166	0	0	244	41	14.386
ZNF331	0	genome.wustl.edu	37	19	54079990	54079990	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	54079990	54079990	A	-	DEL	ZNF331	ENST00000253144	human	ensembl	74_37	+1	known	frame_shift_del	c.176	p.N61fs	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF331	HGNC	ENSG00000130844				57	0	0	77	11	12.5
PRTN3	0	genome.wustl.edu	37	19	846269	846269	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	19	846269	846269	C	-	DEL	PRTN3	ENST00000234347	human	ensembl	74_37	+1	known	frame_shift_del	c.492	p.P166fs	0.000	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRTN3	HGNC	ENSG00000196415				18	0	0	23	3	11.5385
IL1RL2	0	genome.wustl.edu	37	2	102805737	102805737	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	102805737	102805737	G	-	DEL	IL1RL2	ENST00000264257	human	ensembl	74_37	+1	known	frame_shift_del	c.260	p.D89fs	0.000	smart_Ig_sub,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ,prints_IL-1_rcpt_I-typ	-	no_errors	IL1RL2	HGNC	ENSG00000115598				33	0	0	47	7	12.963
ATP6V1C2	0	genome.wustl.edu	37	2	10904470	10904471	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	10904470	10904471	-	T	INS	ATP6V1C2	ENST00000272238	human	ensembl	74_37	+1	known	frame_shift_ins	c.297_298	p.V100fs	0.452:0.539	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C2	HGNC	ENSG00000143882				100	0	0	104	20	16.129
GCC2	0	genome.wustl.edu	37	2	109086477	109086477	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	109086477	109086477	A	-	DEL	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	frame_shift_del	c.692	p.N233fs	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				120	1	0.826446	197	37	15.812
ROCK2	0	genome.wustl.edu	37	2	11389837	11389837	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	11389837	11389837	A	-	DEL	ROCK2	ENST00000315872	human	ensembl	74_37	-1	known	frame_shift_del	c.412	p.W138fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Rho-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318				128	0	0	216	32	12.9032
ENSG00000231731	0	genome.wustl.edu	37	2	128263364	128263366	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	128263364	128263366	AAA	-	DEL	ENSG00000231731	ENST00000599001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.233:0.319:0.309	-	-	-	no_errors	AC010976.2	Clone_based_vega_gene	ENSG00000231731				39	0	0	56	18	24.3243
ACVR2A	0	genome.wustl.edu	37	2	148657041	148657041	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	148657041	148657041	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.278	p.D96fs	1.000	pfam_Activin_rcpt,prints_TGFB_receptor	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				73	0	0	129	36	21.8182
CACNB4	0	genome.wustl.edu	37	2	152709963	152709963	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	152709963	152709963	G	-	DEL	CACNB4	ENST00000539935	human	ensembl	74_37	-1	known	frame_shift_del	c.1115	p.P372fs	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu	-	no_errors	CACNB4	HGNC	ENSG00000182389				13	0	0	13	3	18.75
MYCN	0	genome.wustl.edu	37	2	16082314	16082314	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	16082314	16082314	C	-	DEL	MYCN	ENST00000281043	human	ensembl	74_37	+1	known	frame_shift_del	c.128	p.P45fs	1.000	pfam_Tscrpt_reg_Myc_N,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYCN	HGNC	ENSG00000134323				60	0	0	74	6	7.5
MYCN	0	genome.wustl.edu	37	2	16082321	16082321	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	16082321	16082321	G	-	DEL	MYCN	ENST00000281043	human	ensembl	74_37	+1	known	frame_shift_del	c.135	p.E47fs	0.986	pfam_Tscrpt_reg_Myc_N,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYCN	HGNC	ENSG00000134323				52	0	0	69	6	8
DYNC1I2	0	genome.wustl.edu	37	2	172549339	172549340	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	172549339	172549340	AA	-	DEL	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	frame_shift_del	c.161_162	p.R57fs	1.000:0.999	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				24	0	0	32	5	13.5135
SMC6	0	genome.wustl.edu	37	2	17898126	17898126	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	17898126	17898126	T	-	DEL	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	frame_shift_del	c.1306	p.I436fs	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				26	0	0	55	12	17.9104
TTN	0	genome.wustl.edu	37	2	179424814	179424814	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	179424814	179424814	G	-	DEL	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_del	c.78341	p.P26114fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				101	1	0.980392	90	16	15.0943
TTN	0	genome.wustl.edu	37	2	179469822	179469822	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	179469822	179469822	T	-	DEL	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_del	c.46378	p.T15460fs	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				156	0	0	186	28	13.0841
PMS1	0	genome.wustl.edu	37	2	190670540	190670540	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	190670540	190670540	A	-	DEL	PMS1	ENST00000409985	human	ensembl	74_37	+1	novel	frame_shift_del	c.478	p.K163fs	0.001	NULL	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd	-	no_errors	PMS1	HGNC	ENSG00000064933				10	0	0	15	6	28.5714
GLS	0	genome.wustl.edu	37	2	191797646	191797646	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	191797646	191797646	T	-	DEL	GLS	ENST00000471443	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.013	-	-	-	no_errors	GLS	HGNC	ENSG00000115419				11	0	0	25	7	21.875
SGOL2	0	genome.wustl.edu	37	2	201436289	201436289	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	201436289	201436289	A	-	DEL	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	frame_shift_del	c.1220	p.K409fs	0.134	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535				111	0	0	160	20	11.1111
RAPH1	0	genome.wustl.edu	37	2	204305797	204305798	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	204305797	204305798	-	G	INS	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	frame_shift_ins	c.2272_2271	p.N757fs	0.881:0.912	superfamily_Kinase-like_dom	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				82	0	0	103	13	11.2069
PARD3B	0	genome.wustl.edu	37	2	206166502	206166503	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	206166502	206166503	-	A	INS	PARD3B	ENST00000462231	human	ensembl	74_37	+1	putative	frame_shift_ins	c.2681_2680	p.A896fs	0.000:0.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				51	0	0	67	12	15.1899
NRP2	0	genome.wustl.edu	37	2	206631544	206631545	+	Splice_Site	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	206631544	206631545	-	A	INS	NRP2	ENST00000360409	human	ensembl	74_37	+1	known	splice_site_ins	c.2440+2_2440+1	e15+2	1.000:1.000	-	-	-	no_errors	NRP2	HGNC	ENSG00000118257				64	0	0	87	10	10.3093
ZDBF2	0	genome.wustl.edu	37	2	207174428	207174428	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	207174428	207174428	A	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.5176	p.K1728fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				48	0	0	55	18	24.6575
TRPM8	0	genome.wustl.edu	37	2	234879009	234879010	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	234879009	234879010	-	C	INS	TRPM8	ENST00000324695	human	ensembl	74_37	+1	known	frame_shift_ins	c.2294_2295	p.E768fs	0.005:0.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481				414	2	0.480769	512	71	12.1784
SNED1	0	genome.wustl.edu	37	2	241992583	241992583	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	241992583	241992583	C	-	DEL	SNED1	ENST00000310397	human	ensembl	74_37	+1	known	frame_shift_del	c.2097	p.P701fs	0.106	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_EG-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_Fibronectin_type3,superfamily_Sushi_SCR_CCP,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804				32	0	0	30	4	11.7647
HDLBP	0	genome.wustl.edu	37	2	242196134	242196134	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	242196134	242196134	T	-	DEL	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	frame_shift_del	c.538	p.T180fs	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				131	0	0	146	34	18.8889
C2orf70	0	genome.wustl.edu	37	2	26800479	26800479	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	26800479	26800479	C	-	DEL	C2orf70	ENST00000329615	human	ensembl	74_37	+1	known	frame_shift_del	c.444	p.L150fs	0.999	NULL	pfam_UPF0573/UPF0605	-	no_errors	C2orf70	HGNC	ENSG00000173557				121	0	0	109	16	12.8
ENSG00000272056	0	genome.wustl.edu	37	2	27276505	27276505	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	27276505	27276505	T	-	DEL	ENSG00000272056	ENST00000607407	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-503P10.1	Clone_based_vega_gene	ENSG00000272056				33	0	0	33	4	10.8108
BIRC6	0	genome.wustl.edu	37	2	32740190	32740192	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	32740190	32740192	CCT	-	DEL	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	in_frame_del	c.10702_10704	p.P3570in_frame_del	0.986:0.991:0.556	pfam_DUF3643	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				47	0	0	74	11	12.9412
SULT6B1	0	genome.wustl.edu	37	2	37414553	37414553	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	37414553	37414553	T	-	DEL	SULT6B1	ENST00000535679	human	ensembl	74_37	-1	known	frame_shift_del	c.257	p.K86fs	0.944	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT6B1	HGNC	ENSG00000138068				26	0	0	61	10	14.0845
MSH2	0	genome.wustl.edu	37	2	47639588	47639588	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	47639588	47639588	A	-	DEL	MSH2	ENST00000233146	human	ensembl	74_37	+1	known	frame_shift_del	c.681	p.A230fs	0.994	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom,pirsf_DNA_mismatch_repair_MSH2	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	-	no_errors	MSH2	HGNC	ENSG00000095002				46	0	0	98	12	10.9091
MTIF2	0	genome.wustl.edu	37	2	55467250	55467250	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	55467250	55467250	T	-	DEL	MTIF2	ENST00000263629	human	ensembl	74_37	-1	known	frame_shift_del	c.1767	p.G590fs	0.999	pfam_TIF_IF2_dom3,superfamily_TIF_IF2_dom3	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,superfamily_TIF_IF2_dom3,superfamily_Transl_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760				44	0	0	57	10	14.9254
CCDC88A	0	genome.wustl.edu	37	2	55544436	55544436	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	55544436	55544436	T	-	DEL	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	frame_shift_del	c.3652	p.M1218fs	0.990	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				75	0	0	134	20	12.987
BCL11A	0	genome.wustl.edu	37	2	60780424	60780425	+	RNA	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	60780424	60780425	-	G	INS	BCL11A	ENST00000409351	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	BCL11A	HGNC	ENSG00000119866				36	0	0	63	8	11.2676
PAPOLG	0	genome.wustl.edu	37	2	60995979	60995980	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	60995979	60995980	-	T	INS	PAPOLG	ENST00000238714	human	ensembl	74_37	+1	known	frame_shift_ins	c.392_393	p.E134fs	1.000:0.997	pfam_PolA_pol_cen_dom,pfam_Nucleotidyltransferase,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLG	HGNC	ENSG00000115421				22	0	0	38	5	11.6279
ENSG00000226605	0	genome.wustl.edu	37	2	63053199	63053199	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	63053199	63053199	T	-	DEL	ENSG00000226605	ENST00000452397	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.047	-	-	-	no_errors	AC007098.1	Clone_based_vega_gene	ENSG00000226605				30	0	0	52	11	17.4603
CEP68	0	genome.wustl.edu	37	2	65296702	65296702	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	65296702	65296702	C	-	DEL	CEP68	ENST00000377990	human	ensembl	74_37	+1	known	frame_shift_del	c.124	p.P43fs	0.760	NULL	NULL	-	no_errors	CEP68	HGNC	ENSG00000011523				68	0	0	70	18	20.4545
SNRNP27	0	genome.wustl.edu	37	2	70131463	70131463	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	70131463	70131463	T	-	DEL	SNRNP27	ENST00000409116	human	ensembl	74_37	+1	novel	frame_shift_del	c.426	p.S145fs	0.141	NULL	pfam_DUF1777	-	no_errors	SNRNP27	HGNC	ENSG00000124380				59	0	0	106	16	13.1148
AUP1	0	genome.wustl.edu	37	2	74754869	74754869	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	74754869	74754869	G	-	DEL	AUP1	ENST00000377526	human	ensembl	74_37	-1	known	frame_shift_del	c.835	p.Q279fs	0.954	NULL	pfam_CUE,smart_CUE,pfscan_CUE	-	no_errors	AUP1	HGNC	ENSG00000115307				321	0	0	331	42	11.2601
LOXL3	0	genome.wustl.edu	37	2	74763924	74763924	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	74763924	74763924	C	-	DEL	LOXL3	ENST00000264094	human	ensembl	74_37	-1	known	frame_shift_del	c.824	p.G275fs	0.001	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL3	HGNC	ENSG00000115318				181	1	0.549451	132	35	20.9581
FAHD2A	0	genome.wustl.edu	37	2	96078466	96078466	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	96078466	96078466	C	-	DEL	FAHD2A	ENST00000233379	human	ensembl	74_37	+1	known	frame_shift_del	c.836	p.P281fs	0.997	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2A	HGNC	ENSG00000115042				53	0	0	53	6	10.1695
ANKRD36	0	genome.wustl.edu	37	2	97877449	97877449	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	2	97877449	97877449	A	-	DEL	ANKRD36	ENST00000420699	human	ensembl	74_37	+1	known	frame_shift_del	c.3440	p.K1149fs	0.004	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976				19	0	0	28	4	12.5
RRBP1	0	genome.wustl.edu	37	20	17639535	17639536	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	17639535	17639536	-	T	INS	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	frame_shift_ins	c.1618_1617	p.G539fs	0.152:0.163	NULL	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844				116	0	0	231	31	11.8321
NKX2-2	0	genome.wustl.edu	37	20	21492611	21492611	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	21492611	21492611	G	-	DEL	NKX2-2	ENST00000377142	human	ensembl	74_37	-1	known	frame_shift_del	c.772	p.Q258fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-2	HGNC	ENSG00000125820				125	0	0	111	19	14.6154
CD93	0	genome.wustl.edu	37	20	23065518	23065518	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	23065518	23065518	G	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	frame_shift_del	c.1312	p.L438fs	0.004	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				208	0	0	236	22	8.52713
PCED1A	0	genome.wustl.edu	37	20	2816204	2816204	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	2816204	2816204	C	-	DEL	PCED1A	ENST00000360652	human	ensembl	74_37	-1	known	frame_shift_del	c.1269	p.C425fs	0.001	NULL	NULL	-	no_errors	PCED1A	HGNC	ENSG00000132635				92	0	0	99	12	10.8108
NCOA6	0	genome.wustl.edu	37	20	33346694	33346694	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	33346694	33346694	G	-	DEL	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	frame_shift_del	c.557	p.P186fs	0.996	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				82	0	0	133	19	12.5
CTNNBL1	0	genome.wustl.edu	37	20	36361416	36361416	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	36361416	36361416	A	-	DEL	CTNNBL1	ENST00000405275	human	ensembl	74_37	+1	known	frame_shift_del	c.85	p.R31fs	1.000	pfam_CTNNBL1_N	pfam_CTNNBL1_N,superfamily_ARM-type_fold	-	no_errors	CTNNBL1	HGNC	ENSG00000132792				51	0	0	44	14	24.1379
TTI1	0	genome.wustl.edu	37	20	36627613	36627613	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	36627613	36627613	G	-	DEL	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	frame_shift_del	c.2770	p.L924fs	1.000	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				120	0	0	123	14	10.219
SIGLEC1	0	genome.wustl.edu	37	20	3678774	3678774	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	3678774	3678774	G	-	DEL	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	frame_shift_del	c.1793	p.P598fs	0.998	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				15	0	0	23	3	11.5385
KIAA1755	0	genome.wustl.edu	37	20	36870054	36870054	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	36870054	36870054	T	-	DEL	KIAA1755	ENST00000279024	human	ensembl	74_37	-1	known	frame_shift_del	c.479	p.N160fs	0.002	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633				134	0	0	138	31	18.3432
DDX27	0	genome.wustl.edu	37	20	47860464	47860465	+	RNA	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	47860464	47860465	-	A	INS	DDX27	ENST00000471144	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.005	-	-	-	no_errors	DDX27	HGNC	ENSG00000124228				21	0	0	20	3	13.0435
PMEPA1	0	genome.wustl.edu	37	20	56227349	56227349	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	56227349	56227349	G	-	DEL	PMEPA1	ENST00000341744	human	ensembl	74_37	-1	known	frame_shift_del	c.624	p.S209fs	0.979	NULL	NULL	-	no_errors	PMEPA1	HGNC	ENSG00000124225				74	0	0	76	14	15.5556
VAPB	0	genome.wustl.edu	37	20	56993331	56993331	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	56993331	56993331	T	-	DEL	VAPB	ENST00000475243	human	ensembl	74_37	+1	known	frame_shift_del	c.123	p.F42fs	0.951	pfam_MSP_dom,superfamily_PapD-like,pirsf_Vesicle-associated_membrane,pfscan_MSP_dom	pfam_MSP_dom,superfamily_PapD-like,pirsf_Vesicle-associated_membrane,pfscan_MSP_dom	-	no_errors	VAPB	HGNC	ENSG00000124164				196	0	0	282	49	14.8036
BIRC7	0	genome.wustl.edu	37	20	61869290	61869290	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	20	61869290	61869290	G	-	DEL	BIRC7	ENST00000217169	human	ensembl	74_37	+1	known	frame_shift_del	c.385	p.G130fs	0.998	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC7	HGNC	ENSG00000101197				66	0	0	88	12	12
ADAMTS5	0	genome.wustl.edu	37	21	28306794	28306794	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	28306794	28306794	T	-	DEL	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	frame_shift_del	c.1680	p.K560fs	1.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				77	0	0	120	21	14.8936
TIAM1	0	genome.wustl.edu	37	21	32493037	32493037	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	32493037	32493037	G	-	DEL	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	frame_shift_del	c.4425	p.G1476fs	0.845	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				136	0	0	121	14	10.3704
SCAF4	0	genome.wustl.edu	37	21	33074655	33074655	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	33074655	33074655	T	-	DEL	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	frame_shift_del	c.359	p.N120fs	1.000	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF4	HGNC	ENSG00000156304				48	0	0	82	14	14.5833
C21orf59	0	genome.wustl.edu	37	21	33982209	33982209	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	33982209	33982209	T	-	DEL	C21orf59	ENST00000290155	human	ensembl	74_37	-1	known	frame_shift_del	c.246	p.K82fs	0.940	NULL	pfam_DUF2870	-	no_errors	C21orf59	HGNC	ENSG00000159079				51	0	0	66	10	13.1579
GART	0	genome.wustl.edu	37	21	34882122	34882122	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	34882122	34882122	T	-	DEL	GART	ENST00000381815	human	ensembl	74_37	-1	known	frame_shift_del	c.2420	p.K807fs	0.844	NULL	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C_dom,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth_N_dom,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131				77	0	0	112	18	13.8462
TTC3	0	genome.wustl.edu	37	21	38524243	38524243	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	38524243	38524243	A	-	DEL	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	frame_shift_del	c.2327	p.E779fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				79	0	0	97	20	17.094
SIK1	0	genome.wustl.edu	37	21	44836942	44836942	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	44836942	44836942	G	-	DEL	SIK1	ENST00000270162	human	ensembl	74_37	-1	known	frame_shift_del	c.2032	p.Q678fs	0.361	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK1	HGNC	ENSG00000142178				17	0	0	8	9	52.9412
ICOSLG	0	genome.wustl.edu	37	21	45655413	45655413	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	45655413	45655413	G	-	DEL	ICOSLG	ENST00000344330	human	ensembl	74_37	-1	known	frame_shift_del	c.439	p.H147fs	0.000	pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	ICOSLG	HGNC	ENSG00000160223				161	0	0	224	38	14.5038
SUMO3	0	genome.wustl.edu	37	21	46233871	46233871	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	21	46233871	46233871	G	-	DEL	SUMO3	ENST00000411651	human	ensembl	74_37	-1	known	frame_shift_del	c.170	p.P57fs	0.000	NULL	pfam_Rad60/SUMO_like,pfscan_Ubiquitin_supergroup	-	no_errors	SUMO3	HGNC	ENSG00000184900				110	0	0	92	15	14.0187
DGCR8	0	genome.wustl.edu	37	22	20094896	20094896	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	20094896	20094896	G	-	DEL	DGCR8	ENST00000351989	human	ensembl	74_37	+1	known	frame_shift_del	c.2099	p.R700fs	1.000	NULL	pfam_dsRNA-bd_dom,superfamily_WW_dom,smart_WW_dom,smart_dsRNA-bd_dom,pfscan_WW_dom,pfscan_dsRNA-bd_dom	-	no_errors	DGCR8	HGNC	ENSG00000128191				126	0	0	170	26	13.2653
ENSG00000272578	0	genome.wustl.edu	37	22	24034818	24034818	+	RNA	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	24034818	24034818	A	-	DEL	ENSG00000272578	ENST00000417194	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AP000347.2	Clone_based_vega_gene	ENSG00000272578				107	0	0	71	9	11.25
DDX17	0	genome.wustl.edu	37	22	38897211	38897211	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	38897211	38897211	T	-	DEL	DDX17	ENST00000396821	human	ensembl	74_37	-1	known	frame_shift_del	c.362	p.K121fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201				52	0	0	84	7	7.69231
FAM109B	0	genome.wustl.edu	37	22	42473376	42473377	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	42473376	42473377	-	G	INS	FAM109B	ENST00000321753	human	ensembl	74_37	+1	known	frame_shift_ins	c.79_80	p.P31fs	0.979:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FAM109B	HGNC	ENSG00000177096				153	0	0	183	24	11.5942
CYP2D6	0	genome.wustl.edu	37	22	42524948	42524949	+	Splice_Site	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	42524948	42524949	-	G	INS	CYP2D6	ENST00000360608	human	ensembl	74_37	-1	known	splice_site_ins	c.506-3_506-2	e4-2	0.998:0.896	-	-	-	no_errors	CYP2D6	HGNC	ENSG00000100197				11	0	0	10	5	33.3333
PPP6R2	0	genome.wustl.edu	37	22	50877036	50877036	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	50877036	50877036	C	-	DEL	PPP6R2	ENST00000216061	human	ensembl	74_37	+1	known	frame_shift_del	c.1973	p.H660fs	0.565	NULL	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R2	HGNC	ENSG00000100239				159	0	0	186	25	11.8483
ARSA	0	genome.wustl.edu	37	22	51065641	51065641	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	22	51065641	51065641	G	-	DEL	ARSA	ENST00000216124	human	ensembl	74_37	-1	known	frame_shift_del	c.418	p.H140fs	0.982	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSA	HGNC	ENSG00000100299				36	0	0	34	6	15
TBC1D23	0	genome.wustl.edu	37	3	100039736	100039737	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	100039736	100039737	AA	-	DEL	TBC1D23	ENST00000394144	human	ensembl	74_37	+1	known	frame_shift_del	c.1939_1940	p.K649fs	1.000:1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054				45	0	0	79	14	15.0538
SLC9C1	0	genome.wustl.edu	37	3	112005610	112005610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	112005610	112005610	A	-	DEL	SLC9C1	ENST00000305815	human	ensembl	74_37	-1	known	frame_shift_del	c.29	p.F10fs	0.000	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C1	HGNC	ENSG00000172139				24	0	0	52	6	10.3448
KIAA1407	0	genome.wustl.edu	37	3	113729626	113729626	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	113729626	113729626	T	-	DEL	KIAA1407	ENST00000295878	human	ensembl	74_37	-1	known	frame_shift_del	c.1406	p.N469fs	0.001	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617				134	0	0	205	37	15.2893
GOLGB1	0	genome.wustl.edu	37	3	121416803	121416804	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	121416803	121416804	-	C	INS	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	frame_shift_ins	c.2552_2551	p.A851fs	0.000:0.000	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				157	0	0	234	48	17.0213
PARP14	0	genome.wustl.edu	37	3	122418640	122418640	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	122418640	122418640	A	-	DEL	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	frame_shift_del	c.1239	p.N415fs	0.000	NULL	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				161	0	0	277	41	12.8931
ATP2C1	0	genome.wustl.edu	37	3	130649321	130649322	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	130649321	130649322	-	A	INS	ATP2C1	ENST00000393221	human	ensembl	74_37	+1	known	frame_shift_ins	c.170_171	p.A60fs	1.000:1.000	smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C1	HGNC	ENSG00000017260				73	0	0	116	15	11.4504
CEP63	0	genome.wustl.edu	37	3	134251733	134251733	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	134251733	134251733	A	-	DEL	CEP63	ENST00000337090	human	ensembl	74_37	+1	known	frame_shift_del	c.432	p.I146fs	1.000	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923				74	0	0	117	12	9.30233
CNTN6	0	genome.wustl.edu	37	3	1371501	1371501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	1371501	1371501	A	-	DEL	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	frame_shift_del	c.1246	p.K418fs	0.992	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				61	0	0	126	13	9.35252
ZBTB38	0	genome.wustl.edu	37	3	141162875	141162875	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	141162875	141162875	A	-	DEL	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	frame_shift_del	c.1648	p.T552fs	0.999	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311				54	0	0	111	14	11.2
SLC9A9	0	genome.wustl.edu	37	3	143567076	143567076	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	143567076	143567076	A	-	DEL	SLC9A9	ENST00000316549	human	ensembl	74_37	-1	known	frame_shift_del	c.89	p.L30fs	1.000	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A9	HGNC	ENSG00000181804				85	0	0	159	19	10.6742
P2RY13	0	genome.wustl.edu	37	3	151045875	151045875	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	151045875	151045875	T	-	DEL	P2RY13	ENST00000325602	human	ensembl	74_37	-1	known	frame_shift_del	c.969	p.K323fs	0.020	prints_P2Y13_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_P2Y13_rcpt,prints_GPCR_Rhodpsn,prints_P2Y14_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	P2RY13	HGNC	ENSG00000181631				98	0	0	191	12	5.91133
ARHGEF26	0	genome.wustl.edu	37	3	153840216	153840216	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	153840216	153840216	C	-	DEL	ARHGEF26	ENST00000356448	human	ensembl	74_37	+1	known	frame_shift_del	c.435	p.P147fs	0.002	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF26	HGNC	ENSG00000114790				40	0	0	51	8	13.5593
DHX36	0	genome.wustl.edu	37	3	154032978	154032978	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	154032978	154032978	T	-	DEL	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	frame_shift_del	c.460	p.M154fs	0.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				42	0	0	90	8	8.16327
SI	0	genome.wustl.edu	37	3	164737393	164737394	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	164737393	164737394	-	G	INS	SI	ENST00000264382	human	ensembl	74_37	-1	known	frame_shift_ins	c.3420_3419	p.G1141fs	0.996:1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				69	0	0	117	16	12.0301
PDCD10	0	genome.wustl.edu	37	3	167414854	167414854	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	167414854	167414854	T	-	DEL	PDCD10	ENST00000392750	human	ensembl	74_37	-1	known	frame_shift_del	c.211	p.S71fs	1.000	pfam_DUF1241	pfam_DUF1241	-	no_errors	PDCD10	HGNC	ENSG00000114209				61	0	0	141	9	6
FNDC3B	0	genome.wustl.edu	37	3	172096209	172096210	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	172096209	172096210	-	C	INS	FNDC3B	ENST00000336824	human	ensembl	74_37	+1	known	frame_shift_ins	c.3158_3159	p.T1056fs	0.971:0.958	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420				82	0	0	120	12	9.09091
EPHB3	0	genome.wustl.edu	37	3	184295717	184295718	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	184295717	184295718	-	C	INS	EPHB3	ENST00000330394	human	ensembl	74_37	+1	known	frame_shift_ins	c.1671_1672	p.L558fs	0.097:1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580				92	0	0	127	16	11.1888
LIPH	0	genome.wustl.edu	37	3	185237031	185237032	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	185237031	185237032	CT	-	DEL	LIPH	ENST00000296252	human	ensembl	74_37	-1	known	frame_shift_del	c.785_784	p.S262fs	0.031:0.003	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	LIPH	HGNC	ENSG00000163898				123	0	0	193	20	9.38967
LSG1	0	genome.wustl.edu	37	3	194362829	194362829	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	194362829	194362829	T	-	DEL	LSG1	ENST00000265245	human	ensembl	74_37	-1	known	frame_shift_del	c.1945	p.S649fs	1.000	NULL	pfam_GTP_binding_domain,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	LSG1	HGNC	ENSG00000041802				159	0	0	198	32	13.913
THRB	0	genome.wustl.edu	37	3	24206519	24206519	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	24206519	24206519	T	-	DEL	THRB	ENST00000280696	human	ensembl	74_37	-1	putative	frame_shift_del	c.327	p.Y111fs	1.000	prints_ThyrH_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRB	HGNC	ENSG00000151090				56	0	0	73	12	14.1176
VILL	0	genome.wustl.edu	37	3	38039624	38039625	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	38039624	38039625	-	C	INS	VILL	ENST00000283713	human	ensembl	74_37	+1	known	frame_shift_ins	c.808_809	p.L273fs	0.589:0.638	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				39	0	0	32	8	20
ACAA1	0	genome.wustl.edu	37	3	38163760	38163760	+	RNA	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	38163760	38163760	C	-	DEL	ACAA1	ENST00000451419	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	ACAA1	HGNC	ENSG00000060971				143	0	0	140	21	13.0435
SCN11A	0	genome.wustl.edu	37	3	38949441	38949441	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	38949441	38949441	T	-	DEL	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	frame_shift_del	c.1472	p.K491fs	0.352	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				62	0	0	91	14	13.3333
SETMAR	0	genome.wustl.edu	37	3	4354867	4354867	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	4354867	4354867	A	-	DEL	SETMAR	ENST00000358065	human	ensembl	74_37	+1	known	frame_shift_del	c.442	p.G150fs	0.001	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Transposase_1,pfam_SET_dom,pfam_Pre-SET_dom,pfam_Transposase_Tc1-like,pfam_Transposase_14,superfamily_Homeodomain-like,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETMAR	HGNC	ENSG00000170364				50	0	0	81	9	10
KLHDC8B	0	genome.wustl.edu	37	3	49210244	49210244	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	49210244	49210244	C	-	DEL	KLHDC8B	ENST00000332780	human	ensembl	74_37	+1	known	frame_shift_del	c.42	p.M17fs	1.000	NULL	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC8B	HGNC	ENSG00000185909				56	0	0	54	16	22.8571
STAB1	0	genome.wustl.edu	37	3	52546401	52546401	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	52546401	52546401	C	-	DEL	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	frame_shift_del	c.2928	p.P978fs	0.997	superfamily_FAS1_domain,smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				188	0	0	233	25	9.68992
GLT8D1	0	genome.wustl.edu	37	3	52731827	52731828	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	52731827	52731828	-	C	INS	GLT8D1	ENST00000266014	human	ensembl	74_37	-1	known	frame_shift_ins	c.239_238	p.A80fs	1.000:1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864				99	0	0	152	22	12.6437
PDZRN3	0	genome.wustl.edu	37	3	73437221	73437222	+	Splice_Site	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	73437221	73437222	-	T	INS	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	splice_site_ins	c.1417-2_1417-1	e8-1	1.000:1.000	-	-	-	no_errors	PDZRN3	HGNC	ENSG00000121440				113	0	0	150	19	11.2426
ARL13B	0	genome.wustl.edu	37	3	93755447	93755447	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	93755447	93755447	A	-	DEL	ARL13B	ENST00000394222	human	ensembl	74_37	+1	known	frame_shift_del	c.538	p.G182fs	1.000	pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL13B	HGNC	ENSG00000169379				56	0	0	119	15	11.194
FILIP1L	0	genome.wustl.edu	37	3	99568273	99568273	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	3	99568273	99568273	T	-	DEL	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	frame_shift_del	c.2247	p.K749fs	1.000	superfamily_Prefoldin	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				119	1	0.833333	144	26	15.2941
BANK1	0	genome.wustl.edu	37	4	102951317	102951317	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	102951317	102951317	A	-	DEL	BANK1	ENST00000322953	human	ensembl	74_37	+1	known	frame_shift_del	c.1795	p.T601fs	0.978	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	BANK1	HGNC	ENSG00000153064				94	0	0	155	26	14.3646
ZNF518B	0	genome.wustl.edu	37	4	10446745	10446746	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	10446745	10446746	-	T	INS	ZNF518B	ENST00000326756	human	ensembl	74_37	-1	known	frame_shift_ins	c.1208_1207	p.T403fs	0.086:0.085	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF518B	HGNC	ENSG00000178163				126	0	0	234	41	14.9091
ARSJ	0	genome.wustl.edu	37	4	114823494	114823494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	114823494	114823494	T	-	DEL	ARSJ	ENST00000315366	human	ensembl	74_37	-1	known	frame_shift_del	c.1736	p.K579fs	0.628	NULL	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSJ	HGNC	ENSG00000180801				26	0	0	36	6	14.2857
LARP1B	0	genome.wustl.edu	37	4	129028358	129028358	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	129028358	129028358	A	-	DEL	LARP1B	ENST00000326639	human	ensembl	74_37	+1	known	frame_shift_del	c.878	p.K294fs	1.000	pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1B	HGNC	ENSG00000138709				42	0	0	57	8	12.3077
SH3RF1	0	genome.wustl.edu	37	4	170037648	170037650	+	In_Frame_Del	DEL	CAT	CAT	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	CAT	CAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	170037648	170037650	CAT	-	DEL	SH3RF1	ENST00000284637	human	ensembl	74_37	-1	known	in_frame_del	c.1911_1909	p.M637in_frame_del	0.013:0.015:0.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox,prints_SH3_domain	-	no_errors	SH3RF1	HGNC	ENSG00000154447				73	0	0	79	9	10.2273
GPM6A	0	genome.wustl.edu	37	4	176573029	176573031	+	In_Frame_Del	DEL	GTG	GTG	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	GTG	GTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	176573029	176573031	GTG	-	DEL	GPM6A	ENST00000280187	human	ensembl	74_37	-1	known	in_frame_del	c.497_495	p.T166in_frame_del	1.000:1.000:0.978	pfam_Myelin_PLP,smart_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6A	HGNC	ENSG00000150625				106	0	0	113	14	11.0236
WHSC1	0	genome.wustl.edu	37	4	1980485	1980485	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	1980485	1980485	C	-	DEL	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	frame_shift_del	c.3947	p.P1317fs	0.025	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				70	0	0	99	9	8.33333
HAUS3	0	genome.wustl.edu	37	4	2242634	2242634	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	2242634	2242634	T	-	DEL	HAUS3	ENST00000243706	human	ensembl	74_37	-1	known	frame_shift_del	c.40	p.I14fs	1.000	NULL	NULL	-	no_errors	HAUS3	HGNC	ENSG00000214367				53	0	0	103	13	11.2069
RGS12	0	genome.wustl.edu	37	4	3432431	3432431	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	3432431	3432431	C	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.3863	p.1292fs	0.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				22	0	0	18	4	18.1818
RFC1	0	genome.wustl.edu	37	4	39304169	39304169	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	39304169	39304169	G	-	DEL	RFC1	ENST00000381897	human	ensembl	74_37	-1	known	frame_shift_del	c.2390	p.P797fs	1.000	superfamily_P-loop_NTPase,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_P-loop_NTPase,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928				56	0	0	75	13	14.7727
OCIAD1	0	genome.wustl.edu	37	4	48859372	48859372	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	48859372	48859372	A	-	DEL	OCIAD1	ENST00000264312	human	ensembl	74_37	+1	known	frame_shift_del	c.690	p.E233fs	0.300	NULL	pfam_OCIA	-	no_errors	OCIAD1	HGNC	ENSG00000109180				77	0	0	111	13	10.4839
UGT2B7	0	genome.wustl.edu	37	4	69962562	69962562	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	69962562	69962562	T	-	DEL	UGT2B7	ENST00000305231	human	ensembl	74_37	+1	known	frame_shift_del	c.324	p.S110fs	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B7	HGNC	ENSG00000171234				72	0	0	67	11	14.1026
EPGN	0	genome.wustl.edu	37	4	75178863	75178863	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	75178863	75178863	T	-	DEL	EPGN	ENST00000413830	human	ensembl	74_37	+1	known	frame_shift_del	c.383	p.Y130fs	0.897	NULL	pfscan_EG-like_dom	-	no_errors	EPGN	HGNC	ENSG00000182585				29	0	0	75	10	11.7647
SHROOM3	0	genome.wustl.edu	37	4	77675979	77675979	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	77675979	77675979	C	-	DEL	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	frame_shift_del	c.4343	p.P1449fs	0.008	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771				61	0	0	61	11	15.2778
AFAP1-AS1	0	genome.wustl.edu	37	4	7776640	7776640	+	RNA	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	7776640	7776640	A	-	DEL	AFAP1-AS1	ENST00000608442	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AFAP1-AS1	HGNC	ENSG00000272620				89	0	0	141	18	11.3208
ANTXR2	0	genome.wustl.edu	37	4	80905990	80905990	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	80905990	80905990	C	-	DEL	ANTXR2	ENST00000307333	human	ensembl	74_37	-1	known	frame_shift_del	c.1069	p.A357fs	0.559	pirsf_Anthrax_toxin_rcpt	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_C,pfam_Anthrax_toxin_rcpt_extracel,pfam_VWF_A,superfamily_Ig_E-set,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR2	HGNC	ENSG00000163297				19	0	0	33	3	8.33333
C4orf22	0	genome.wustl.edu	37	4	81791254	81791254	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	81791254	81791254	A	-	DEL	C4orf22	ENST00000508675	human	ensembl	74_37	+1	known	frame_shift_del	c.492	p.R167fs	0.769	NULL	NULL	-	no_errors	C4orf22	HGNC	ENSG00000197826				88	0	0	151	29	16.1111
ENSG00000227304	0	genome.wustl.edu	37	4	83416686	83416686	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	83416686	83416686	T	-	DEL	ENSG00000227304	ENST00000488045	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.914	-	-	-	no_errors	RP11-791G16.2	Clone_based_vega_gene	ENSG00000227304				13	0	0	16	4	20
PTPN13	0	genome.wustl.edu	37	4	87622607	87622607	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	4	87622607	87622607	A	-	DEL	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	frame_shift_del	c.848	p.K285fs	0.941	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				34	0	0	54	9	14.2857
PPIP5K2	0	genome.wustl.edu	37	5	102537308	102537309	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	102537308	102537309	-	A	INS	PPIP5K2	ENST00000358359	human	ensembl	74_37	+1	known	frame_shift_ins	c.3705_3706	p.N1237fs	0.977:0.999	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	PPIP5K2	HGNC	ENSG00000145725				25	0	0	56	4	6.66667
CTNND2	0	genome.wustl.edu	37	5	11384949	11384949	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	11384949	11384949	G	-	DEL	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	frame_shift_del	c.1005	p.T336fs	0.973	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				47	0	0	48	9	15.7895
FBN2	0	genome.wustl.edu	37	5	127611764	127611764	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	127611764	127611764	C	-	DEL	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	frame_shift_del	c.7560	p.Y2521fs	0.002	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				148	0	0	230	24	9.44882
SLC27A6	0	genome.wustl.edu	37	5	128368800	128368800	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	128368800	128368800	A	-	DEL	SLC27A6	ENST00000262462	human	ensembl	74_37	+1	known	frame_shift_del	c.1685	p.M564fs	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A6	HGNC	ENSG00000113396				14	0	0	28	4	12.5
PCDHA3	0	genome.wustl.edu	37	5	140181371	140181371	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	140181371	140181371	A	-	DEL	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	frame_shift_del	c.589	p.N199fs	0.987	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				62	0	0	106	25	19.084
PCDHB4	0	genome.wustl.edu	37	5	140502487	140502487	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	140502487	140502487	A	-	DEL	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	frame_shift_del	c.907	p.K305fs	0.078	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818				186	0	0	259	51	16.4516
TCERG1	0	genome.wustl.edu	37	5	145887465	145887465	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	145887465	145887465	A	-	DEL	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	frame_shift_del	c.2940	p.I983fs	0.686	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				32	0	0	48	9	15.7895
SLC36A1	0	genome.wustl.edu	37	5	150847389	150847389	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	150847389	150847389	T	-	DEL	SLC36A1	ENST00000243389	human	ensembl	74_37	+1	known	frame_shift_del	c.626	p.F210fs	0.979	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643				142	0	0	174	33	15.942
SGCD	0	genome.wustl.edu	37	5	156022056	156022056	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	156022056	156022056	T	-	DEL	SGCD	ENST00000337851	human	ensembl	74_37	+1	known	frame_shift_del	c.497	p.L167fs	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCD	HGNC	ENSG00000170624				11	0	0	43	8	15.6863
EBF1	0	genome.wustl.edu	37	5	158526597	158526597	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	158526597	158526597	T	-	DEL	EBF1	ENST00000518836	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.941	-	-	-	no_errors	EBF1	HGNC	ENSG00000164330				17	0	0	20	8	28.5714
MYO10	0	genome.wustl.edu	37	5	16694606	16694606	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	16694606	16694606	C	-	DEL	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	frame_shift_del	c.3674	p.G1225fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				203	0	0	236	74	23.871
NKX2-5	0	genome.wustl.edu	37	5	172659921	172659921	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	172659921	172659921	G	-	DEL	NKX2-5	ENST00000329198	human	ensembl	74_37	-1	known	frame_shift_del	c.626	p.P209fs	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-5	HGNC	ENSG00000183072				31	0	0	15	3	16.6667
EGFLAM	0	genome.wustl.edu	37	5	38407028	38407028	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	38407028	38407028	C	-	DEL	EGFLAM	ENST00000354891	human	ensembl	74_37	+1	known	frame_shift_del	c.927	p.P311fs	0.000	NULL	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318				142	0	0	261	27	9.375
PPWD1	0	genome.wustl.edu	37	5	64867924	64867925	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	64867924	64867925	-	A	INS	PPWD1	ENST00000261308	human	ensembl	74_37	+1	known	frame_shift_ins	c.780_781	p.N261fs	0.270:0.764	superfamily_WD40_repeat_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_WD40_repeat,superfamily_Cyclophilin-like_PPIase_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PPWD1	HGNC	ENSG00000113593				69	0	0	115	20	14.8148
MAST4	0	genome.wustl.edu	37	5	66386023	66386023	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	5	66386023	66386023	C	-	DEL	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	frame_shift_del	c.797	p.S268fs	1.000	pfam_MA_Ser/Thr_Kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				17	0	0	68	9	11.6883
GRIK2	0	genome.wustl.edu	37	6	102503432	102503432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	102503432	102503432	A	-	DEL	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	frame_shift_del	c.2539	p.N849fs	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				119	0	0	185	30	13.9535
GCNT2	0	genome.wustl.edu	37	6	10557410	10557410	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	10557410	10557410	C	-	DEL	GCNT2	ENST00000316170	human	ensembl	74_37	+1	known	frame_shift_del	c.754	p.H254fs	1.000	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT2	HGNC	ENSG00000111846				102	0	0	130	22	14.4737
BEND3	0	genome.wustl.edu	37	6	107391602	107391602	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	107391602	107391602	C	-	DEL	BEND3	ENST00000369042	human	ensembl	74_37	-1	known	frame_shift_del	c.793	p.D265fs	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409				61	0	0	50	25	33.3333
MARCKS	0	genome.wustl.edu	37	6	114181210	114181210	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	114181210	114181210	A	-	DEL	MARCKS	ENST00000368635	human	ensembl	74_37	+1	known	frame_shift_del	c.454	p.K155fs	1.000	pfam_MARCKS	pfam_MARCKS,prints_MARCKS	-	no_errors	MARCKS	HGNC	ENSG00000155130				29	0	0	26	12	31.5789
MARCKS	0	genome.wustl.edu	37	6	114181729	114181730	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	114181729	114181730	-	C	INS	MARCKS	ENST00000368635	human	ensembl	74_37	+1	known	frame_shift_ins	c.973_974	p.A328fs	1.000:0.999	pfam_MARCKS	pfam_MARCKS,prints_MARCKS	-	no_errors	MARCKS	HGNC	ENSG00000155130				106	0	0	166	26	13.5417
NT5DC1	0	genome.wustl.edu	37	6	116560165	116560165	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	116560165	116560165	T	-	DEL	NT5DC1	ENST00000319550	human	ensembl	74_37	+1	known	frame_shift_del	c.1131	p.F379fs	0.996	superfamily_HAD-like_dom	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	-	no_errors	NT5DC1	HGNC	ENSG00000178425				72	0	0	144	19	11.6564
ARHGAP18	0	genome.wustl.edu	37	6	129901238	129901238	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	129901238	129901238	A	-	DEL	ARHGAP18	ENST00000368149	human	ensembl	74_37	-1	known	frame_shift_del	c.1877	p.L626fs	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP18	HGNC	ENSG00000146376				40	0	0	58	9	13.4328
MED23	0	genome.wustl.edu	37	6	131919846	131919846	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	131919846	131919846	T	-	DEL	MED23	ENST00000368058	human	ensembl	74_37	-1	known	frame_shift_del	c.2294	p.N765fs	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282				75	0	0	132	17	11.4094
ENSG00000235381	0	genome.wustl.edu	37	6	155575538	155575539	+	RNA	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	155575538	155575539	-	C	INS	ENSG00000235381	ENST00000435295	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-477D19.2	Clone_based_vega_gene	ENSG00000235381				54	0	0	41	14	25.4545
DTNBP1	0	genome.wustl.edu	37	6	15651580	15651580	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	15651580	15651580	A	-	DEL	DTNBP1	ENST00000355917	human	ensembl	74_37	-1	known	frame_shift_del	c.125	p.L42fs	1.000	NULL	pfam_Dysbindin,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	DTNBP1	HGNC	ENSG00000047579				133	0	0	255	35	12.069
SYNJ2	0	genome.wustl.edu	37	6	158508009	158508009	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	158508009	158508009	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.3331	p.P1113fs	1.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				98	0	0	105	21	16.6667
TULP4	0	genome.wustl.edu	37	6	158900956	158900957	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	158900956	158900957	-	C	INS	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	frame_shift_ins	c.1200_1201	p.R402fs	1.000:1.000	pfam_SOCS_C,superfamily_Tumour_necrosis_fac-like_dom,smart_SOCS_C,pfscan_SOCS_C	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				96	0	0	64	6	8.57143
RBM24	0	genome.wustl.edu	37	6	17292449	17292450	+	RNA	DEL	AA	AA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	17292449	17292450	AA	-	DEL	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.915:0.719	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				58	0	0	36	15	29.4118
KIF13A	0	genome.wustl.edu	37	6	17788022	17788023	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	17788022	17788023	-	T	INS	KIF13A	ENST00000259711	human	ensembl	74_37	-1	known	frame_shift_ins	c.3346_3345	p.V1115fs	1.000:1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177				73	0	0	144	30	17.2414
OR2J1	0	genome.wustl.edu	37	6	29068729	29068729	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	29068729	29068729	A	-	DEL	OR2J1	ENST00000377171	human	ensembl	74_37	+1	known	frame_shift_del	c.10	p.N6fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2J1	HGNC	ENSG00000204702				30	0	0	58	11	15.942
HLA-B	0	genome.wustl.edu	37	6	31323362	31323363	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	31323362	31323363	-	G	INS	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	frame_shift_ins	c.627_626	p.T211fs	0.002:0.142	pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-B	HGNC	ENSG00000234745				251	0	0	269	48	15.142
HLA-B	0	genome.wustl.edu	37	6	31324889	31324890	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	31324889	31324890	-	C	INS	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	frame_shift_ins	c.47_46	p.A16fs	0.079:0.024	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-B	HGNC	ENSG00000234745				25	0	0	17	2	10.5263
GPANK1	0	genome.wustl.edu	37	6	31630313	31630314	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	31630313	31630314	-	C	INS	GPANK1	ENST00000375893	human	ensembl	74_37	-1	known	frame_shift_ins	c.801_800	p.W268fs	1.000:1.000	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	pfam_G_patch_dom,superfamily_Ankyrin_rpt-contain_dom,smart_G_patch_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_G_patch_dom	-	no_errors	GPANK1	HGNC	ENSG00000204438				77	0	0	76	13	14.6067
PBX2	0	genome.wustl.edu	37	6	32157563	32157563	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	32157563	32157563	C	-	DEL	PBX2	ENST00000375050	human	ensembl	74_37	-1	known	frame_shift_del	c.130	p.V44fs	1.000	NULL	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX2	HGNC	ENSG00000204304				51	0	0	72	7	8.86076
BRD2	0	genome.wustl.edu	37	6	32945969	32945970	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	32945969	32945970	AG	-	DEL	BRD2	ENST00000395289	human	ensembl	74_37	+1	known	frame_shift_del	c.1645_1646	p.K552fs	1.000:1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD2	HGNC	ENSG00000204256				89	0	0	77	16	17.2043
UHRF1BP1	0	genome.wustl.edu	37	6	34839369	34839369	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	34839369	34839369	C	-	DEL	UHRF1BP1	ENST00000192788	human	ensembl	74_37	+1	known	frame_shift_del	c.3990	p.I1333fs	1.000	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060				91	0	0	99	13	11.6071
TCP11	0	genome.wustl.edu	37	6	35108559	35108560	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	35108559	35108560	-	G	INS	TCP11	ENST00000311875	human	ensembl	74_37	-1	known	frame_shift_ins	c.128_127	p.Q43fs	0.000:0.004	NULL	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678				50	0	0	56	7	11.1111
CUL9	0	genome.wustl.edu	37	6	43166564	43166566	+	In_Frame_Del	DEL	CAA	CAA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	CAA	CAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	43166564	43166566	CAA	-	DEL	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	in_frame_del	c.3021_3023	p.N1008in_frame_del	0.998:0.997:0.987	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				96	0	0	78	15	16.129
PLA2G7	0	genome.wustl.edu	37	6	46677134	46677134	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	46677134	46677134	T	-	DEL	PLA2G7	ENST00000274793	human	ensembl	74_37	-1	known	frame_shift_del	c.799	p.I267fs	0.996	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	-	no_errors	PLA2G7	HGNC	ENSG00000146070				57	0	0	128	12	8.57143
GPR110	0	genome.wustl.edu	37	6	46977322	46977322	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	46977322	46977322	T	-	DEL	GPR110	ENST00000371253	human	ensembl	74_37	-1	known	frame_shift_del	c.1849	p.S617fs	0.309	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_Ig-hepta_rcpt	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292				54	0	0	58	14	19.4444
GCM1	0	genome.wustl.edu	37	6	52999110	52999110	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	52999110	52999110	T	-	DEL	GCM1	ENST00000259803	human	ensembl	74_37	-1	known	frame_shift_del	c.88	p.T30fs	0.969	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM1	HGNC	ENSG00000137270				98	0	0	137	20	12.7389
HCRTR2	0	genome.wustl.edu	37	6	55039411	55039411	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	55039411	55039411	C	-	DEL	HCRTR2	ENST00000370862	human	ensembl	74_37	+1	known	frame_shift_del	c.26	p.P11fs	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	-	no_errors	HCRTR2	HGNC	ENSG00000137252				181	0	0	219	34	13.4387
DST	0	genome.wustl.edu	37	6	56374465	56374465	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	56374465	56374465	C	-	DEL	DST	ENST00000370754	human	ensembl	74_37	-1	known	frame_shift_del	c.18894	p.T6299fs	0.027	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				70	0	0	76	7	8.43373
FAM135A	0	genome.wustl.edu	37	6	71235776	71235776	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	71235776	71235776	A	-	DEL	FAM135A	ENST00000418814	human	ensembl	74_37	+1	known	frame_shift_del	c.2989	p.N999fs	0.027	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269				34	0	0	57	8	12.3077
SMAP1	0	genome.wustl.edu	37	6	71508370	71508371	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	71508370	71508371	AA	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.506_507	p.K172fs	1.000:1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				12	0	0	15	4	21.0526
TTK	0	genome.wustl.edu	37	6	80751897	80751897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	80751897	80751897	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2552	p.R854fs	0.102	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				52	0	0	67	7	9.45946
SNAP91	0	genome.wustl.edu	37	6	84269853	84269853	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	84269853	84269853	G	-	DEL	SNAP91	ENST00000369694	human	ensembl	74_37	-1	known	frame_shift_del	c.2601	p.F868fs	1.000	NULL	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609				103	0	0	125	20	13.7931
SNHG5	0	genome.wustl.edu	37	6	86387037	86387037	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	86387037	86387037	T	-	DEL	SNHG5	ENST00000384338	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNHG5	HGNC	ENSG00000203875				62	0	0	104	21	16.8
MANEA	0	genome.wustl.edu	37	6	96034870	96034871	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	6	96034870	96034871	TA	-	DEL	MANEA	ENST00000369293	human	ensembl	74_37	+1	known	frame_shift_del	c.555_556	p.Y189fs	0.026:0.048	NULL	NULL	-	no_errors	MANEA	HGNC	ENSG00000172469				61	0	0	88	13	12.8713
PLOD3	0	genome.wustl.edu	37	7	100855926	100855927	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	100855926	100855927	-	G	INS	PLOD3	ENST00000223127	human	ensembl	74_37	-1	known	frame_shift_ins	c.890_889	p.R297fs	1.000:1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397				76	0	0	86	10	10.4167
CUX1	0	genome.wustl.edu	37	7	101839973	101839974	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	101839973	101839974	-	C	INS	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	frame_shift_ins	c.1315_1316	p.P442fs	1.000:1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				135	0	0	183	23	11.165
LRRC17	0	genome.wustl.edu	37	7	102584993	102584993	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	102584993	102584993	A	-	DEL	LRRC17	ENST00000339431	human	ensembl	74_37	+1	known	frame_shift_del	c.1265	p.K424fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606				78	0	0	94	29	23.5772
IFRD1	0	genome.wustl.edu	37	7	112108038	112108039	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	112108038	112108039	-	T	INS	IFRD1	ENST00000005558	human	ensembl	74_37	+1	known	frame_shift_ins	c.909_910	p.Y305fs	1.000:1.000	pfam_Interferon-rel_develop_reg_N,superfamily_ARM-type_fold	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD1	HGNC	ENSG00000006652				54	0	0	88	17	16.1905
SND1	0	genome.wustl.edu	37	7	127724828	127724828	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	127724828	127724828	C	-	DEL	SND1	ENST00000354725	human	ensembl	74_37	+1	known	frame_shift_del	c.2163	p.P723fs	1.000	pfam_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				80	0	0	82	23	21.9048
AKR1B10	0	genome.wustl.edu	37	7	134222396	134222396	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	134222396	134222396	A	-	DEL	AKR1B10	ENST00000359579	human	ensembl	74_37	+1	known	frame_shift_del	c.724	p.T244fs	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B10	HGNC	ENSG00000198074				161	0	0	137	28	16.9697
SLC4A2	0	genome.wustl.edu	37	7	150761764	150761764	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	150761764	150761764	G	-	DEL	SLC4A2	ENST00000413384	human	ensembl	74_37	+1	known	frame_shift_del	c.369	p.E125fs	1.000	NULL	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889				54	0	0	56	15	21.1268
KMT2C	0	genome.wustl.edu	37	7	151845524	151845524	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	151845524	151845524	A	-	DEL	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_del	c.13659	p.F4553fs	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				134	0	0	211	35	14.2276
TMEM184A	0	genome.wustl.edu	37	7	1589528	1589530	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	1589528	1589530	GAT	-	DEL	TMEM184A	ENST00000297477	human	ensembl	74_37	-1	known	in_frame_del	c.606_604	p.I202in_frame_del	1.000:1.000:0.956	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	TMEM184A	HGNC	ENSG00000164855				145	0	0	123	18	12.766
NUPL2	0	genome.wustl.edu	37	7	23224772	23224773	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	23224772	23224773	-	G	INS	NUPL2	ENST00000258742	human	ensembl	74_37	+1	known	frame_shift_ins	c.205_206	p.S72fs	0.997:1.000	NULL	smart_Znf_CCCH	-	no_errors	NUPL2	HGNC	ENSG00000136243				99	0	0	147	20	11.976
HOXA3	0	genome.wustl.edu	37	7	27147961	27147962	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	27147961	27147962	-	G	INS	HOXA3	ENST00000317201	human	ensembl	74_37	-1	known	frame_shift_ins	c.905_904	p.Q302fs	0.997:0.997	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997				48	0	0	46	13	22.0339
GPR141	0	genome.wustl.edu	37	7	37780671	37780671	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	37780671	37780671	A	-	DEL	GPR141	ENST00000334425	human	ensembl	74_37	+1	known	frame_shift_del	c.676	p.N227fs	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR141	HGNC	ENSG00000187037				140	0	0	220	32	12.6984
FOXK1	0	genome.wustl.edu	37	7	4798983	4798983	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	4798983	4798983	C	-	DEL	FOXK1	ENST00000328914	human	ensembl	74_37	+1	known	frame_shift_del	c.1453	p.R486fs	0.995	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK1	HGNC	ENSG00000164916				36	0	0	40	4	9.09091
DDC	0	genome.wustl.edu	37	7	50531075	50531075	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	50531075	50531075	T	-	DEL	DDC	ENST00000357936	human	ensembl	74_37	-1	known	frame_shift_del	c.1297	p.I433fs	1.000	superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437				83	0	0	126	19	13.1034
INTS4L2	0	genome.wustl.edu	37	7	65150713	65150714	+	RNA	INS	-	-	A			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	65150713	65150714	-	A	INS	INTS4L2	ENST00000430126	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.995	-	-	-	no_errors	INTS4L2	HGNC	ENSG00000232270				31	0	0	57	8	12.3077
PMS2CL	0	genome.wustl.edu	37	7	6791127	6791127	+	RNA	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	6791127	6791127	A	-	DEL	PMS2CL	ENST00000486256	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	PMS2CL	HGNC	ENSG00000187953				27	0	0	30	14	31.8182
ANKIB1	0	genome.wustl.edu	37	7	91936914	91936914	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	91936914	91936914	A	-	DEL	ANKIB1	ENST00000265742	human	ensembl	74_37	+1	known	frame_shift_del	c.430	p.N146fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629				52	0	0	67	13	16.25
SAMD9L	0	genome.wustl.edu	37	7	92762979	92762979	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	92762979	92762979	T	-	DEL	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	frame_shift_del	c.2306	p.N769fs	1.000	superfamily_P-loop_NTPase	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				121	0	0	192	36	15.7895
SAMD9L	0	genome.wustl.edu	37	7	92763654	92763654	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	92763654	92763654	A	-	DEL	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	frame_shift_del	c.1631	p.L544fs	0.924	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				35	0	0	65	10	13.3333
ZKSCAN1	0	genome.wustl.edu	37	7	99631749	99631750	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	7	99631749	99631750	AG	-	DEL	ZKSCAN1	ENST00000324306	human	ensembl	74_37	+1	known	frame_shift_del	c.1621_1622	p.R543fs	0.322:0.996	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261				201	1	0.49505	184	27	12.7962
NACAP1	0	genome.wustl.edu	37	8	102381883	102381884	+	RNA	DEL	AA	AA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	102381883	102381884	AA	-	DEL	NACAP1	ENST00000419462	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.879:0.891	-	-	-	no_errors	NACAP1	HGNC	ENSG00000228224				16	0	0	30	9	23.0769
SOX7	0	genome.wustl.edu	37	8	10583952	10583952	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	10583952	10583952	C	-	DEL	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	frame_shift_del	c.619	p.A207fs	0.588	NULL	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056				58	0	0	34	5	12.8205
TAF2	0	genome.wustl.edu	37	8	120816158	120816159	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	120816158	120816159	CT	-	DEL	TAF2	ENST00000378164	human	ensembl	74_37	-1	known	frame_shift_del	c.520_519	p.G174fs	1.000:1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313				193	0	0	337	53	13.5897
PLEC	0	genome.wustl.edu	37	8	144991222	144991223	+	In_Frame_Ins	INS	-	-	AGG			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	144991222	144991223	-	AGG	INS	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	in_frame_ins	c.13178_13177	p.4393in_frame_insS	1.000:1.000	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				117	0	0	144	13	8.28025
ENSG00000204791	0	genome.wustl.edu	37	8	145106384	145106384	+	RNA	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	145106384	145106384	G	-	DEL	ENSG00000204791	ENST00000528912	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTD-3065J16.6	Clone_based_vega_gene	ENSG00000204791				27	0	0	27	4	12.9032
SLC52A2	0	genome.wustl.edu	37	8	145583737	145583739	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	145583737	145583739	CTT	-	DEL	SLC52A2	ENST00000329994	human	ensembl	74_37	+1	known	in_frame_del	c.585_587	p.F197in_frame_del	0.536:0.997:1.000	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A2	HGNC	ENSG00000185803				156	0	0	200	18	8.25688
ZNF34	0	genome.wustl.edu	37	8	145998752	145998752	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	145998752	145998752	C	-	DEL	ZNF34	ENST00000343459	human	ensembl	74_37	-1	known	frame_shift_del	c.1582	p.E528fs	0.988	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF34	HGNC	ENSG00000196378				176	0	0	225	28	11.0672
SLC7A2	0	genome.wustl.edu	37	8	17409402	17409402	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	17409402	17409402	A	-	DEL	SLC7A2	ENST00000004531	human	ensembl	74_37	+1	known	frame_shift_del	c.1082	p.S363fs	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989				122	0	0	166	30	15.3061
MTUS1	0	genome.wustl.edu	37	8	17504627	17504627	+	RNA	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	17504627	17504627	A	-	DEL	MTUS1	ENST00000518889	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MTUS1	HGNC	ENSG00000129422				40	0	0	49	14	22.2222
PRKDC	0	genome.wustl.edu	37	8	48701554	48701555	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	48701554	48701555	-	T	INS	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_ins	c.10812_10811	p.N3604fs	0.004:0.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				61	0	0	107	18	14.4
ERICH1	0	genome.wustl.edu	37	8	623865	623865	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	623865	623865	T	-	DEL	ERICH1	ENST00000262109	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.R163fs	0.988	NULL	NULL	-	no_errors	ERICH1	HGNC	ENSG00000104714				57	0	0	76	14	15.5556
SBSPON	0	genome.wustl.edu	37	8	73982108	73982109	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	73982108	73982109	CA	-	DEL	SBSPON	ENST00000297354	human	ensembl	74_37	-1	known	frame_shift_del	c.609_608	p.V203fs	0.763:0.998	NULL	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Somatomedin_B_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SBSPON	HGNC	ENSG00000164764				71	0	0	90	13	12.6214
JPH1	0	genome.wustl.edu	37	8	75227676	75227676	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	75227676	75227676	C	-	DEL	JPH1	ENST00000342232	human	ensembl	74_37	-1	known	frame_shift_del	c.559	p.A187fs	0.960	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH1	HGNC	ENSG00000104369				70	0	0	64	7	9.85915
ZBTB10	0	genome.wustl.edu	37	8	81399872	81399872	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	8	81399872	81399872	A	-	DEL	ZBTB10	ENST00000430430	human	ensembl	74_37	+1	known	frame_shift_del	c.827	p.K277fs	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB10	HGNC	ENSG00000205189				52	0	0	55	10	15.3846
ALG2	0	genome.wustl.edu	37	9	101980272	101980272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	101980272	101980272	A	-	DEL	ALG2	ENST00000476832	human	ensembl	74_37	-1	known	frame_shift_del	c.1195	p.S399fs	1.000	NULL	pfam_Glyco_trans_1	-	no_errors	ALG2	HGNC	ENSG00000119523				80	0	0	135	17	11.1842
SMC2	0	genome.wustl.edu	37	9	106885501	106885501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	106885501	106885501	A	-	DEL	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	frame_shift_del	c.2245	p.T751fs	0.998	superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				55	0	0	112	15	11.811
CNTRL	0	genome.wustl.edu	37	9	123924525	123924525	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	123924525	123924525	A	-	DEL	CNTRL	ENST00000238341	human	ensembl	74_37	+1	known	frame_shift_del	c.5399	p.K1802fs	1.000	superfamily_tRNA-bd_arm	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNTRL	HGNC	ENSG00000119397				61	0	0	110	21	16.0305
GSN	0	genome.wustl.edu	37	9	124074857	124074857	+	RNA	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	124074857	124074857	A	-	DEL	GSN	ENST00000485767	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GSN	HGNC	ENSG00000148180				10	0	0	6	7	53.8462
SLC2A8	0	genome.wustl.edu	37	9	130162220	130162220	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	130162220	130162220	G	-	DEL	SLC2A8	ENST00000373371	human	ensembl	74_37	+1	known	frame_shift_del	c.461	p.L156fs	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A8	HGNC	ENSG00000136856				120	0	0	163	15	8.42697
CRAT	0	genome.wustl.edu	37	9	131857690	131857690	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	131857690	131857690	G	-	DEL	CRAT	ENST00000318080	human	ensembl	74_37	-1	known	frame_shift_del	c.1867	p.R623fs	0.020	NULL	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321				90	0	0	79	15	15.9574
FNBP1	0	genome.wustl.edu	37	9	132687243	132687243	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	132687243	132687243	T	-	DEL	FNBP1	ENST00000446176	human	ensembl	74_37	-1	known	frame_shift_del	c.983	p.N328fs	1.000	NULL	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Ribosomal_S20,superfamily_HR1_rho-bd,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	FNBP1	HGNC	ENSG00000187239				22	0	0	27	7	20.5882
ENSG00000236986	0	genome.wustl.edu	37	9	134008392	134008392	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	134008392	134008392	T	-	DEL	ENSG00000236986	ENST00000587264	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-544A12.4	Clone_based_vega_gene	ENSG00000236986				18	0	0	21	11	34.375
SETX	0	genome.wustl.edu	37	9	135158548	135158549	+	RNA	DEL	AA	AA	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	135158548	135158549	AA	-	DEL	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.003	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				20	0	0	13	3	18.75
COL5A1	0	genome.wustl.edu	37	9	137676834	137676834	+	Splice_Site	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	137676834	137676834	G	-	DEL	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	splice_site_del	c.2485-1	e30-1	1.000	-	-	-	no_errors	COL5A1	HGNC	ENSG00000130635				77	0	0	89	14	13.5922
RNF208	0	genome.wustl.edu	37	9	140115423	140115424	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	140115423	140115424	-	C	INS	RNF208	ENST00000391553	human	ensembl	74_37	-1	known	frame_shift_ins	c.242_241	p.D81fs	0.993:0.997	NULL	pfscan_Znf_RING	-	no_errors	RNF208	HGNC	ENSG00000212864				10	0	0	9	4	30.7692
MIR602	0	genome.wustl.edu	37	9	140732961	140732961	+	RNA	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	140732961	140732961	C	-	DEL	MIR602	ENST00000384960	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.093	-	-	-	no_errors	MIR602	HGNC	ENSG00000207693				108	0	0	117	27	18.75
PTPLAD2	0	genome.wustl.edu	37	9	21007046	21007046	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	21007046	21007046	T	-	DEL	PTPLAD2	ENST00000495827	human	ensembl	74_37	-1	known	frame_shift_del	c.689	p.K230fs	1.000	NULL	pfam_Tyr_Pase-like_PTPLA	-	no_errors	PTPLAD2	HGNC	ENSG00000188921				64	0	0	118	20	14.4928
ERMP1	0	genome.wustl.edu	37	9	5801292	5801292	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	5801292	5801292	T	-	DEL	ERMP1	ENST00000339450	human	ensembl	74_37	-1	known	frame_shift_del	c.1951	p.T651fs	0.994	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219				65	0	0	89	17	16.0377
ALDH1A1	0	genome.wustl.edu	37	9	75545894	75545894	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	75545894	75545894	A	-	DEL	ALDH1A1	ENST00000297785	human	ensembl	74_37	-1	known	frame_shift_del	c.213	p.Q72fs	0.983	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092				96	0	0	126	27	17.6471
ASPN	0	genome.wustl.edu	37	9	95236979	95236979	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	95236979	95236979	A	-	DEL	ASPN	ENST00000375544	human	ensembl	74_37	-1	known	frame_shift_del	c.201	p.P68fs	0.936	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	ASPN	HGNC	ENSG00000106819				57	0	0	86	11	11.3402
PTCH1	0	genome.wustl.edu	37	9	98209617	98209617	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	98209617	98209617	G	-	DEL	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	frame_shift_del	c.3921	p.R1308fs	0.441	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				150	0	0	152	27	15.0838
PTCH1	0	genome.wustl.edu	37	9	98268793	98268793	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	98268793	98268793	T	-	DEL	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	frame_shift_del	c.290	p.N97fs	1.000	tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				85	0	0	101	18	15.1261
ERCC6L2	0	genome.wustl.edu	37	9	98683572	98683572	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	9	98683572	98683572	A	-	DEL	ERCC6L2	ENST00000437817	human	ensembl	74_37	+1	known	frame_shift_del	c.740	p.R249fs	0.786	pfam_SNF2_N,pfam_HDA_complex_subunit-2/3,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L2	HGNC	ENSG00000182150				68	0	0	99	13	11.6071
TAF7L	0	genome.wustl.edu	37	X	100530216	100530217	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	100530216	100530217	-	T	INS	TAF7L	ENST00000372907	human	ensembl	74_37	-1	known	frame_shift_ins	c.1338_1337	p.N446fs	0.515:0.449	NULL	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7L	HGNC	ENSG00000102387				229	0	0	341	47	12.1134
ARMCX1	0	genome.wustl.edu	37	X	100809163	100809163	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	100809163	100809163	T	-	DEL	ARMCX1	ENST00000372829	human	ensembl	74_37	+1	known	frame_shift_del	c.1250	p.F419fs	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMCX1	HGNC	ENSG00000126947				74	0	0	132	21	13.7255
ZMAT1	0	genome.wustl.edu	37	X	101138439	101138439	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	101138439	101138439	T	-	DEL	ZMAT1	ENST00000494068	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZMAT1	HGNC	ENSG00000166432				40	0	0	41	18	30.5085
BHLHB9	0	genome.wustl.edu	37	X	102003967	102003967	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	102003967	102003967	A	-	DEL	BHLHB9	ENST00000361229	human	ensembl	74_37	+1	known	frame_shift_del	c.44	p.K17fs	0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908				189	1	0.526316	169	25	12.8866
RNF128	0	genome.wustl.edu	37	X	105937256	105937256	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	105937256	105937256	T	-	DEL	RNF128	ENST00000324342	human	ensembl	74_37	+1	known	frame_shift_del	c.24	p.W11fs	0.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135				49	0	0	96	13	11.9266
COL4A5	0	genome.wustl.edu	37	X	107834822	107834822	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	107834822	107834822	C	-	DEL	COL4A5	ENST00000328300	human	ensembl	74_37	+1	known	frame_shift_del	c.1371	p.P459fs	0.765	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153				242	1	0.411523	314	35	10.0287
BCORL1	0	genome.wustl.edu	37	X	129147854	129147854	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	129147854	129147854	C	-	DEL	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	frame_shift_del	c.1106	p.T371fs	0.770	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				14	0	0	4	2	33.3333
CCDC160	0	genome.wustl.edu	37	X	133378875	133378875	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	133378875	133378875	T	-	DEL	CCDC160	ENST00000370809	human	ensembl	74_37	+1	known	frame_shift_del	c.45	p.F17fs	0.398	NULL	NULL	-	no_errors	CCDC160	HGNC	ENSG00000203952				18	0	0	27	7	20.5882
PNMA3	0	genome.wustl.edu	37	X	152225666	152225667	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	152225666	152225667	-	G	INS	PNMA3	ENST00000370264	human	ensembl	74_37	+1	known	frame_shift_ins	c.254_255	p.P88fs	0.007:0.011	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PNMA3	HGNC	ENSG00000183837				160	0	0	137	20	12.7389
L1CAM	0	genome.wustl.edu	37	X	153132296	153132296	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	153132296	153132296	G	-	DEL	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	frame_shift_del	c.2245	p.Q749fs	0.247	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				83	0	0	61	12	16.4384
SLC10A3	0	genome.wustl.edu	37	X	153716473	153716473	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	153716473	153716473	C	-	DEL	SLC10A3	ENST00000263512	human	ensembl	74_37	-1	known	frame_shift_del	c.807	p.S270fs	0.974	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903				155	0	0	130	19	12.7517
FAM3A	0	genome.wustl.edu	37	X	153735823	153735824	+	Splice_Site	INS	-	-	G			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	153735823	153735824	-	G	INS	FAM3A	ENST00000359889	human	ensembl	74_37	-1	known	splice_site_ins	c.386-3_386-2	e7-2	0.999:0.587	-	-	-	no_errors	FAM3A	HGNC	ENSG00000071889				61	0	0	40	6	13.0435
SYAP1	0	genome.wustl.edu	37	X	16754325	16754325	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	16754325	16754325	T	-	DEL	SYAP1	ENST00000380155	human	ensembl	74_37	+1	known	frame_shift_del	c.331	p.F111fs	1.000	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	SYAP1	HGNC	ENSG00000169895				56	0	0	107	16	13.0081
PRRG1	0	genome.wustl.edu	37	X	37312611	37312611	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	37312611	37312611	C	-	DEL	PRRG1	ENST00000378628	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.P134fs	0.109	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_GLA_domain	-	no_errors	PRRG1	HGNC	ENSG00000130962				173	0	0	259	33	11.3014
SHROOM4	0	genome.wustl.edu	37	X	50556963	50556964	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	50556963	50556964	-	C	INS	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	frame_shift_ins	c.56_55	p.A19fs	0.999:1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352				37	0	0	48	6	11.1111
TAF1	0	genome.wustl.edu	37	X	70603000	70603000	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	70603000	70603000	A	-	DEL	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	frame_shift_del	c.1930	p.K646fs	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				55	0	0	87	12	12.1212
XIST	0	genome.wustl.edu	37	X	73047124	73047125	+	RNA	DEL	AC	AC	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	73047124	73047125	AC	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				152	0	0	201	32	13.7339
XIST	0	genome.wustl.edu	37	X	73070114	73070114	+	RNA	DEL	A	A	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	73070114	73070114	A	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				28	0	0	31	6	16.2162
PGK1	0	genome.wustl.edu	37	X	77380774	77380774	+	RNA	DEL	T	T	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	77380774	77380774	T	-	DEL	PGK1	ENST00000476531	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PGK1	HGNC	ENSG00000102144				39	0	0	47	10	17.5439
SATL1	0	genome.wustl.edu	37	X	84362677	84362677	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8363-01A-11D-2340-08	TCGA-BR-8363-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6bceffa6-e5c3-4e22-b3a6-cec46af9cdf9	125f7197-7b54-4623-bad0-b0fbd39af62e	X	84362677	84362677	G	-	DEL	SATL1	ENST00000509231	human	ensembl	74_37	-1	known	frame_shift_del	c.1298	p.P433fs	0.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788				290	0	0	306	49	13.8028
