Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CAP1	0	genome.wustl.edu	37	1	40536131	40536131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	1	40536131	40536131	G	A	SNP	CAP1	ENST00000372792	human	ensembl	74_37	+1	known	missense	c.1147	p.D383N	1.000	pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP1	HGNC	ENSG00000131236				46	0	0	26	3	10.3448
MKNK1	0	genome.wustl.edu	37	1	47027164	47027164	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	1	47027164	47027164	G	T	SNP	MKNK1	ENST00000371946	human	ensembl	74_37	-1	known	missense	c.1114	p.P372T	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MKNK1	HGNC	ENSG00000079277				37	0	0	28	2	6.66667
SGIP1	0	genome.wustl.edu	37	1	67199453	67199453	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	1	67199453	67199453	A	G	SNP	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	missense	c.2014	p.N672D	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				31	0	0	29	4	12.1212
OR4X1	0	genome.wustl.edu	37	11	48286169	48286169	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	11	48286169	48286169	T	A	SNP	OR4X1	ENST00000320048	human	ensembl	74_37	+1	known	missense	c.757	p.S253T	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4X1	HGNC	ENSG00000176567				54	0	0	51	4	7.27273
OR9G1	0	genome.wustl.edu	37	11	56468225	56468225	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	11	56468225	56468225	G	A	SNP	OR9G1	ENST00000312153	human	ensembl	74_37	+1	known	missense	c.362	p.R121H	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9G1	HGNC	ENSG00000174914				63	0	0	61	5	7.57576
DNM1P47	0	genome.wustl.edu	37	15	102292726	102292726	+	RNA	SNP	G	G	A			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	15	102292726	102292726	G	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				19	0	0	9	4	30.7692
KIAA1199	0	genome.wustl.edu	37	15	81225778	81225778	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	15	81225778	81225778	A	G	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.2986	p.I996V	0.963	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				41	0	0	39	5	11.3636
CDH1	0	genome.wustl.edu	37	16	68842463	68842463	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	16	68842463	68842463	T	C	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.524	p.L175P	0.996	pfam_Cadherin,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				16	0	0	19	8	29.6296
KRTAP4-11	0	genome.wustl.edu	37	17	39274343	39274343	+	Silent	SNP	A	A	G			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	17	39274343	39274343	A	G	SNP	KRTAP4-11	ENST00000391413	human	ensembl	74_37	-1	known	silent	c.225	p.C75	0.188	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-11	HGNC	ENSG00000212721				51	0	0	53	3	5.35714
ZNF521	0	genome.wustl.edu	37	18	22807194	22807194	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	18	22807194	22807194	C	G	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.688	p.G230R	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				20	0	0	20	3	13.0435
UPF1	0	genome.wustl.edu	37	19	18956872	18956872	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	19	18956872	18956872	C	G	SNP	UPF1	ENST00000599848	human	ensembl	74_37	+1	known	missense	c.315	p.F105L	0.977	NULL	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase	-	no_errors	UPF1	HGNC	ENSG00000005007				53	0	0	41	4	8.88889
RHPN2	0	genome.wustl.edu	37	19	33490564	33490564	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	19	33490564	33490564	G	T	SNP	RHPN2	ENST00000254260	human	ensembl	74_37	-1	known	missense	c.1153	p.L385I	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941				29	0	0	22	4	15.3846
SEC1P	0	genome.wustl.edu	37	19	49183667	49183667	+	RNA	SNP	G	G	A			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	19	49183667	49183667	G	A	SNP	SEC1P	ENST00000430145	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEC1P	HGNC	ENSG00000232871				26	0	0	27	4	12.9032
DENND1C	0	genome.wustl.edu	37	19	6467600	6467600	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	19	6467600	6467600	G	T	SNP	DENND1C	ENST00000381480	human	ensembl	74_37	-1	known	missense	c.2321	p.P774H	0.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744				19	0	0	24	2	7.69231
LPPR3	0	genome.wustl.edu	37	19	815788	815788	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	19	815788	815788	G	A	SNP	LPPR3	ENST00000359894	human	ensembl	74_37	-1	known	missense	c.139	p.P47S	1.000	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR3	Uniprot_gn	ENSG00000129951				32	0	0	30	3	9.09091
GPR39	0	genome.wustl.edu	37	2	133174712	133174712	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	2	133174712	133174712	C	G	SNP	GPR39	ENST00000329321	human	ensembl	74_37	+1	known	missense	c.97	p.L33V	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840				35	0	0	29	4	12.1212
TOMM34	0	genome.wustl.edu	37	20	43572195	43572195	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	20	43572195	43572195	G	T	SNP	TOMM34	ENST00000372813	human	ensembl	74_37	-1	known	missense	c.724	p.Q242K	1.000	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM34	HGNC	ENSG00000025772				36	0	0	46	4	8
TEKT4P2	0	genome.wustl.edu	37	21	9907198	9907198	+	RNA	SNP	C	C	T			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	21	9907198	9907198	C	T	SNP	TEKT4P2	ENST00000416067	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	TEKT4P2	HGNC	ENSG00000188681				16	0	0	9	3	25
PHLDB2	0	genome.wustl.edu	37	3	111692580	111692580	+	Silent	SNP	C	C	T			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	3	111692580	111692580	C	T	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	silent	c.3537	p.D1179	0.999	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824				29	0	0	19	3	13.6364
PIK3CB	0	genome.wustl.edu	37	3	138374293	138374293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	3	138374293	138374293	C	T	SNP	PIK3CB	ENST00000289153	human	ensembl	74_37	-1	known	missense	c.3151	p.E1051K	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382				37	0	0	29	7	19.4444
ITIH1	0	genome.wustl.edu	37	3	52819116	52819116	+	Silent	SNP	C	C	T			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	3	52819116	52819116	C	T	SNP	ITIH1	ENST00000273283	human	ensembl	74_37	+1	known	silent	c.1464	p.P488	0.225	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957				77	0	0	52	5	8.77193
PCDHB12	0	genome.wustl.edu	37	5	140588900	140588900	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	5	140588900	140588900	G	C	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	missense	c.421	p.E141Q	0.895	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				65	0	0	55	6	9.83607
TTBK1	0	genome.wustl.edu	37	6	43214429	43214429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	6	43214429	43214429	G	A	SNP	TTBK1	ENST00000259750	human	ensembl	74_37	+1	known	missense	c.31	p.E11K	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK1	HGNC	ENSG00000146216				36	0	0	21	4	16
COL12A1	0	genome.wustl.edu	37	6	75884763	75884763	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	6	75884763	75884763	T	C	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.2701	p.T901A	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				63	0	0	46	6	11.5385
COL28A1	0	genome.wustl.edu	37	7	7412686	7412686	+	Silent	SNP	G	G	A			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	7	7412686	7412686	G	A	SNP	COL28A1	ENST00000399429	human	ensembl	74_37	-1	known	silent	c.2851	p.L951	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018				34	0	0	29	4	12.1212
RIMS2	0	genome.wustl.edu	37	8	105257239	105257239	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	8	105257239	105257239	C	T	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	nonsense	c.3430	p.R1144*	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				89	0	0	49	12	19.6721
PHYHIP	0	genome.wustl.edu	37	8	22079030	22079030	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	8	22079030	22079030	G	A	SNP	PHYHIP	ENST00000454243	human	ensembl	74_37	-1	known	missense	c.829	p.R277C	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIP	HGNC	ENSG00000168490				43	0	0	40	6	13.0435
COL5A1	0	genome.wustl.edu	37	9	137622102	137622102	+	Silent	SNP	G	G	A			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	9	137622102	137622102	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	silent	c.945	p.T315	0.111	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				77	0	0	58	8	12.1212
AQP7	0	genome.wustl.edu	37	9	33386510	33386510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	9	33386510	33386510	C	T	SNP	AQP7	ENST00000297988	human	ensembl	74_37	-1	known	missense	c.298	p.A100T	0.005	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_MIP	-	no_errors	AQP7	HGNC	ENSG00000165269				10	0	0	9	5	35.7143
AQP7	0	genome.wustl.edu	37	9	33386511	33386511	+	Silent	SNP	A	A	G			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	9	33386511	33386511	A	G	SNP	AQP7	ENST00000297988	human	ensembl	74_37	-1	known	silent	c.297	p.F99	0.013	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_MIP	-	no_errors	AQP7	HGNC	ENSG00000165269				10	0	0	9	5	35.7143
FAM74A3	0	genome.wustl.edu	37	9	40715944	40715944	+	RNA	SNP	A	A	G			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	9	40715944	40715944	A	G	SNP	FAM74A3	ENST00000355345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	FAM74A3	HGNC	ENSG00000204844				13	0	0	7	4	36.3636
IPPK	0	genome.wustl.edu	37	9	95396678	95396678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	9	95396678	95396678	G	A	SNP	IPPK	ENST00000287996	human	ensembl	74_37	-1	known	missense	c.1160	p.A387V	0.991	pfam_Ins_P5_2-kin	pfam_Ins_P5_2-kin	-	no_errors	IPPK	HGNC	ENSG00000127080				28	0	0	27	3	10
RDX	0	genome.wustl.edu	37	11	110106855	110106855	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	11	110106855	110106855	T	-	DEL	RDX	ENST00000530749	human	ensembl	74_37	-1	known	frame_shift_del	c.1313	p.K438fs	1.000	pirsf_ERM,pfam_ERM_C_dom,superfamily_Adenylate_cyclase-assoc_CAP_N	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	RDX	HGNC	ENSG00000137710				40	0	0	24	2	7.69231
CCDC90B	0	genome.wustl.edu	37	11	82984771	82984771	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	11	82984771	82984771	A	-	DEL	CCDC90B	ENST00000529073	human	ensembl	74_37	-1	putative	frame_shift_del	c.479	p.L160fs	0.846	pfam_DUF1640	pfam_DUF1640	-	no_errors	CCDC90B	HGNC	ENSG00000137500				12	0	0	6	2	25
ARID1B	0	genome.wustl.edu	37	6	157100396	157100397	+	In_Frame_Ins	INS	-	-	CGC			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	6	157100396	157100397	-	CGC	INS	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	in_frame_ins	c.1333_1334	p.449in_frame_insP	1.000:1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				9	0	0	9	2	18.1818
PRKDC	0	genome.wustl.edu	37	8	48689477	48689477	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8364-01A-11D-2340-08	TCGA-BR-8364-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	31604e3a-9873-4f4c-9e47-e503ee4503ad	a48dc850-ad6d-4715-bf12-610020a4f411	8	48689477	48689477	T	-	DEL	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	frame_shift_del	c.12107	p.N4036fs	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				28	0	0	17	2	10.5263
