Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AMY2B	0	genome.wustl.edu	37	1	104122045	104122045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	104122045	104122045	G	A	SNP	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	missense	c.1459	p.D487N	0.976	pfam_A-amylase_b_C,smart_A-amylase_b_C	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038				390	0	0	239	42	14.9466
PTCHD2	0	genome.wustl.edu	37	1	11579842	11579842	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	11579842	11579842	A	T	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.2105	p.N702I	0.002	pfam_Patched	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				203	0	0	64	19	22.8916
TAS1R3	0	genome.wustl.edu	37	1	1269599	1269599	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	1269599	1269599	T	G	SNP	TAS1R3	ENST00000339381	human	ensembl	74_37	+1	known	missense	c.2314	p.F772V	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962				24	0	0	7	2	22.2222
PDE4DIP	0	genome.wustl.edu	37	1	144892483	144892483	+	Silent	SNP	A	A	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	144892483	144892483	A	T	SNP	PDE4DIP	ENST00000369351	human	ensembl	74_37	-1	known	silent	c.2922	p.G974	0.073	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				152	0	0	81	8	8.98876
SF3B4	0	genome.wustl.edu	37	1	149898269	149898269	+	Silent	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	149898269	149898269	T	C	SNP	SF3B4	ENST00000271628	human	ensembl	74_37	-1	known	silent	c.705	p.P235	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SF3B4	HGNC	ENSG00000143368				85	0	0	29	7	19.4444
RAB13	0	genome.wustl.edu	37	1	153955315	153955315	+	RNA	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	153955315	153955315	C	T	SNP	RAB13	ENST00000462680	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RAB13	HGNC	ENSG00000143545				46	0	0	18	4	18.1818
FCRL2	0	genome.wustl.edu	37	1	157738349	157738349	+	Silent	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	157738349	157738349	G	T	SNP	FCRL2	ENST00000361516	human	ensembl	74_37	-1	known	silent	c.738	p.T246	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL2	HGNC	ENSG00000132704				199	0	0	105	17	13.9344
CD5L	0	genome.wustl.edu	37	1	157803288	157803288	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	157803288	157803288	T	C	SNP	CD5L	ENST00000368174	human	ensembl	74_37	-1	known	missense	c.733	p.R245G	0.576	superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD5L	HGNC	ENSG00000073754				164	0	0	71	15	17.4419
FCER1A	0	genome.wustl.edu	37	1	159275976	159275976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	159275976	159275976	C	T	SNP	FCER1A	ENST00000368115	human	ensembl	74_37	+1	known	missense	c.530	p.T177M	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCER1A	HGNC	ENSG00000179639				113	1	0.877193	58	8	12.1212
SLC9C2	0	genome.wustl.edu	37	1	173506170	173506170	+	Silent	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	173506170	173506170	A	G	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	silent	c.1566	p.F522	1.000	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				130	0	0	108	15	12.1951
STX6	0	genome.wustl.edu	37	1	180957480	180957480	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	180957480	180957480	A	C	SNP	STX6	ENST00000258301	human	ensembl	74_37	-1	known	missense	c.491	p.L164W	1.000	smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX6	HGNC	ENSG00000135823				93	0	0	35	8	18.6047
CFHR2	0	genome.wustl.edu	37	1	196920148	196920148	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	196920148	196920148	C	T	SNP	CFHR2	ENST00000367415	human	ensembl	74_37	+1	known	silent	c.420	p.C140	0.037	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR2	HGNC	ENSG00000080910				141	0	0	48	5	9.43396
TGFB2	0	genome.wustl.edu	37	1	218520217	218520217	+	Silent	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	218520217	218520217	T	G	SNP	TGFB2	ENST00000366929	human	ensembl	74_37	+1	known	silent	c.174	p.P58	0.876	pirsf_TGF-beta,pfam_TGF-b_N,prints_TGFb2	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_TGFb2,prints_TGF-beta	-	no_errors	TGFB2	HGNC	ENSG00000092969				113	0	0	45	6	11.7647
OBSCN	0	genome.wustl.edu	37	1	228430947	228430947	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	228430947	228430947	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.2993	p.A998G	0.015	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				58	0	0	13	4	23.5294
OBSCN	0	genome.wustl.edu	37	1	228548245	228548245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	228548245	228548245	C	T	SNP	OBSCN	ENST00000366709	human	ensembl	74_37	+1	known	missense	c.11009	p.S3670F	0.993	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_DH-domain,pfam_Fibronectin_type3,pfam_IQ_motif_EF-hand-BS,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				23	0	0	14	2	12.5
TRIM11	0	genome.wustl.edu	37	1	228582439	228582439	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	228582439	228582439	T	G	SNP	TRIM11	ENST00000284551	human	ensembl	74_37	-1	known	missense	c.1374	p.K458N	0.517	superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM11	HGNC	ENSG00000154370				49	0	0	15	3	16.6667
EFCAB2	0	genome.wustl.edu	37	1	245250690	245250690	+	RNA	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	245250690	245250690	A	G	SNP	EFCAB2	ENST00000473686	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.170	-	-	-	no_errors	EFCAB2	HGNC	ENSG00000203666				32	0	0	17	6	26.087
AHCTF1	0	genome.wustl.edu	37	1	247006019	247006019	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	247006019	247006019	C	T	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	silent	c.6612	p.T2204	0.273	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				190	0	0	82	13	13.6842
NLRP3	0	genome.wustl.edu	37	1	247588601	247588601	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	247588601	247588601	A	C	SNP	NLRP3	ENST00000336119	human	ensembl	74_37	+1	known	missense	c.1856	p.K619T	0.966	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711				81	0	0	37	5	11.9048
OR2G2	0	genome.wustl.edu	37	1	247752318	247752318	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	247752318	247752318	C	T	SNP	OR2G2	ENST00000320065	human	ensembl	74_37	+1	known	silent	c.657	p.V219	0.019	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489				116	0	0	70	16	18.6047
OR2G6	0	genome.wustl.edu	37	1	248685732	248685732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	248685732	248685732	C	T	SNP	OR2G6	ENST00000343414	human	ensembl	74_37	+1	known	missense	c.785	p.P262L	0.806	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558				137	0	0	76	4	5
RPE65	0	genome.wustl.edu	37	1	68910260	68910260	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	68910260	68910260	T	A	SNP	RPE65	ENST00000262340	human	ensembl	74_37	-1	known	missense	c.449	p.N150I	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	RPE65	HGNC	ENSG00000116745				130	0	0	64	18	21.9512
CA6	0	genome.wustl.edu	37	1	9011657	9011657	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	9011657	9011657	C	T	SNP	CA6	ENST00000480186	human	ensembl	74_37	+1	putative	silent	c.435	p.G145	0.002	pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA6	HGNC	ENSG00000131686				67	0	0	19	3	13.6364
ATRNL1	0	genome.wustl.edu	37	10	116930868	116930868	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	10	116930868	116930868	A	C	SNP	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	missense	c.1166	p.N389T	1.000	pfam_Kelch_2	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518				172	0	0	94	15	13.7615
PNLIP	0	genome.wustl.edu	37	10	118321115	118321115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	10	118321115	118321115	C	T	SNP	PNLIP	ENST00000369221	human	ensembl	74_37	+1	known	missense	c.1301	p.S434F	0.907	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535				165	0	0	97	7	6.73077
HSPA12A	0	genome.wustl.edu	37	10	118435928	118435928	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	10	118435928	118435928	T	C	SNP	HSPA12A	ENST00000369209	human	ensembl	74_37	-1	known	missense	c.1372	p.S458G	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868				169	0	0	50	9	15.2542
RGS10	0	genome.wustl.edu	37	10	121285571	121285571	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	10	121285571	121285571	A	C	SNP	RGS10	ENST00000369103	human	ensembl	74_37	-1	known	missense	c.228	p.D76E	0.913	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS10	HGNC	ENSG00000148908				171	0	0	50	15	23.0769
INPP5A	0	genome.wustl.edu	37	10	134563341	134563341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	10	134563341	134563341	G	A	SNP	INPP5A	ENST00000368594	human	ensembl	74_37	+1	known	missense	c.895	p.G299S	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5A	HGNC	ENSG00000068383				203	0	0	53	10	15.873
NEBL	0	genome.wustl.edu	37	10	21101765	21101765	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	10	21101765	21101765	G	T	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	missense	c.2451	p.S817R	0.997	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				52	0	0	41	4	8.88889
PTF1A	0	genome.wustl.edu	37	10	23482704	23482704	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	10	23482704	23482704	G	T	SNP	PTF1A	ENST00000376504	human	ensembl	74_37	+1	known	nonsense	c.856	p.E286*	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	PTF1A	HGNC	ENSG00000168267				455	1	0.219298	144	28	16.2791
GPR158	0	genome.wustl.edu	37	10	25887234	25887234	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	10	25887234	25887234	C	T	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	silent	c.2679	p.H893	0.989	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				233	0	0	86	10	10.4167
ANKRD30A	0	genome.wustl.edu	37	10	37451723	37451723	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	10	37451723	37451723	A	G	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	missense	c.1781	p.K594R	0.057	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513				152	0	0	95	17	15.1786
CCAR1	0	genome.wustl.edu	37	10	70496773	70496773	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	10	70496773	70496773	C	A	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	missense	c.214	p.Q72K	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				63	0	0	23	14	37.8378
HKDC1	0	genome.wustl.edu	37	10	71008285	71008285	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	10	71008285	71008285	C	T	SNP	HKDC1	ENST00000354624	human	ensembl	74_37	+1	known	silent	c.1371	p.T457	0.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510				100	0	0	41	3	6.81818
KCNQ1	0	genome.wustl.edu	37	11	2604770	2604770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	11	2604770	2604770	C	T	SNP	KCNQ1	ENST00000155840	human	ensembl	74_37	+1	known	missense	c.1027	p.P343S	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCQN1,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ1	HGNC	ENSG00000053918				157	0	0	57	8	12.3077
OR52I1	0	genome.wustl.edu	37	11	4615839	4615839	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	11	4615839	4615839	T	G	SNP	OR52I1	ENST00000530443	human	ensembl	74_37	+1	known	missense	c.571	p.L191V	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52I1	HGNC	ENSG00000232268				257	1	0.387597	142	21	12.8834
OR5D14	0	genome.wustl.edu	37	11	55563231	55563231	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	11	55563231	55563231	A	G	SNP	OR5D14	ENST00000335605	human	ensembl	74_37	+1	known	missense	c.200	p.H67R	0.009	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113				106	0	0	95	10	9.52381
FADS3	0	genome.wustl.edu	37	11	61646980	61646980	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	11	61646980	61646980	G	C	SNP	FADS3	ENST00000278829	human	ensembl	74_37	-1	known	missense	c.326	p.A109G	0.050	superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS3	HGNC	ENSG00000221968				17	0	0	2	2	50
RARRES3	0	genome.wustl.edu	37	11	63312231	63312231	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	11	63312231	63312231	C	T	SNP	RARRES3	ENST00000255688	human	ensembl	74_37	+1	known	missense	c.257	p.P86L	0.982	pfam_LRAT-like_dom	pfam_LRAT-like_dom	-	no_errors	RARRES3	HGNC	ENSG00000133321				173	0	0	80	12	13.0435
VPS29	0	genome.wustl.edu	37	12	110933945	110933945	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	110933945	110933945	T	C	SNP	VPS29	ENST00000549578	human	ensembl	74_37	-1	known	missense	c.67	p.K23E	1.000	tigrfam_Phosphodiesterase_MJ0936	tigrfam_Phosphodiesterase_MJ0936	-	no_errors	VPS29	HGNC	ENSG00000111237				123	0	0	66	16	19.5122
TMEM132B	0	genome.wustl.edu	37	12	126138782	126138782	+	Silent	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	126138782	126138782	G	A	SNP	TMEM132B	ENST00000299308	human	ensembl	74_37	+1	known	silent	c.2763	p.A921	0.008	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364				150	0	0	85	7	7.6087
MMP17	0	genome.wustl.edu	37	12	132326256	132326256	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	132326256	132326256	T	C	SNP	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	missense	c.794	p.I265T	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598				63	0	0	26	11	29.7297
PDE3A	0	genome.wustl.edu	37	12	20523121	20523121	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	20523121	20523121	C	T	SNP	PDE3A	ENST00000359062	human	ensembl	74_37	+1	known	silent	c.903	p.S301	0.006	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572				69	0	0	30	5	14.2857
GYS2	0	genome.wustl.edu	37	12	21757519	21757519	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	21757519	21757519	C	T	SNP	GYS2	ENST00000261195	human	ensembl	74_37	-1	known	missense	c.8	p.R3Q	0.643	NULL	pfam_Glycogen_synth,pfam_Glyco_trans_1	-	no_errors	GYS2	HGNC	ENSG00000111713				76	0	0	47	33	41.25
LDHB	0	genome.wustl.edu	37	12	21807527	21807527	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	21807527	21807527	C	T	SNP	LDHB	ENST00000350669	human	ensembl	74_37	-1	known	missense	c.79	p.V27M	0.999	pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHB	HGNC	ENSG00000111716				193	0	0	94	11	10.4762
LINC00477	0	genome.wustl.edu	37	12	24736768	24736768	+	RNA	SNP	C	C	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	24736768	24736768	C	A	SNP	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				92	0	0	40	17	29.8246
KRAS	0	genome.wustl.edu	37	12	25380275	25380275	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	25380275	25380275	T	G	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.183	p.Q61H	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				72	0	0	32	27	45.7627
FOXM1	0	genome.wustl.edu	37	12	2968120	2968120	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	2968120	2968120	A	G	SNP	FOXM1	ENST00000342628	human	ensembl	74_37	-1	known	missense	c.2090	p.L697P	0.782	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206				125	0	0	53	16	23.1884
KRT85	0	genome.wustl.edu	37	12	52754645	52754645	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	52754645	52754645	A	G	SNP	KRT85	ENST00000257901	human	ensembl	74_37	-1	known	missense	c.1516	p.F506L	0.974	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT85	HGNC	ENSG00000135443				173	0	0	54	10	15.625
ITGB7	0	genome.wustl.edu	37	12	53587072	53587072	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	53587072	53587072	C	T	SNP	ITGB7	ENST00000267082	human	ensembl	74_37	-1	known	silent	c.1578	p.G526	0.990	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Plexin-like_fold,superfamily_Integrin_bsu_tail,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB7	HGNC	ENSG00000139626				44	0	0	26	3	10.3448
VWF	0	genome.wustl.edu	37	12	6078421	6078421	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	6078421	6078421	T	G	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.7685	p.Q2562P	1.000	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				39	0	0	23	5	17.8571
TMCC3	0	genome.wustl.edu	37	12	94976127	94976127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	12	94976127	94976127	C	T	SNP	TMCC3	ENST00000261226	human	ensembl	74_37	-1	known	missense	c.266	p.R89H	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704				230	0	0	118	12	9.23077
SGCG	0	genome.wustl.edu	37	13	23824817	23824817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	13	23824817	23824817	C	T	SNP	SGCG	ENST00000218867	human	ensembl	74_37	+1	known	missense	c.346	p.R116C	0.255	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCG	HGNC	ENSG00000102683				55	0	0	17	3	15
MLNR	0	genome.wustl.edu	37	13	49795336	49795336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	13	49795336	49795336	G	A	SNP	MLNR	ENST00000218721	human	ensembl	74_37	+1	known	missense	c.863	p.G288E	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_GHS-R	-	no_errors	MLNR	HGNC	ENSG00000102539				36	0	0	14	5	26.3158
COMMD6	0	genome.wustl.edu	37	13	76111944	76111944	+	RNA	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	13	76111944	76111944	G	A	SNP	COMMD6	ENST00000486516	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	COMMD6	HGNC	ENSG00000188243				144	0	0	68	17	20
ABCC4	0	genome.wustl.edu	37	13	95839074	95839074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	13	95839074	95839074	C	T	SNP	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	missense	c.1426	p.A476T	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				53	0	0	26	4	13.3333
OR11H12	0	genome.wustl.edu	37	14	19378049	19378049	+	Silent	SNP	T	T	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	14	19378049	19378049	T	A	SNP	OR11H12	ENST00000550708	human	ensembl	74_37	+1	known	silent	c.456	p.T152	0.011	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11H12	HGNC	ENSG00000257115				538	0	0	354	26	6.84211
CMA1	0	genome.wustl.edu	37	14	24975265	24975265	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	14	24975265	24975265	C	T	SNP	CMA1	ENST00000250378	human	ensembl	74_37	-1	known	missense	c.569	p.G190D	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CMA1	HGNC	ENSG00000092009				81	0	0	35	2	5.40541
PYGL	0	genome.wustl.edu	37	14	51383390	51383390	+	Silent	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	14	51383390	51383390	A	G	SNP	PYGL	ENST00000216392	human	ensembl	74_37	-1	known	silent	c.1062	p.F354	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGL	HGNC	ENSG00000100504				149	0	0	45	8	15.0943
MYO1E	0	genome.wustl.edu	37	15	59548485	59548485	+	Silent	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	15	59548485	59548485	G	T	SNP	MYO1E	ENST00000288235	human	ensembl	74_37	-1	known	silent	c.330	p.I110	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1E	HGNC	ENSG00000157483				68	0	0	36	7	16.2791
RBPMS2	0	genome.wustl.edu	37	15	65041332	65041332	+	Silent	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	15	65041332	65041332	G	A	SNP	RBPMS2	ENST00000300069	human	ensembl	74_37	-1	known	silent	c.285	p.P95	0.006	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBPMS2	HGNC	ENSG00000166831				176	0	0	60	10	14.2857
NEO1	0	genome.wustl.edu	37	15	73580780	73580780	+	Silent	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	15	73580780	73580780	A	G	SNP	NEO1	ENST00000261908	human	ensembl	74_37	+1	known	silent	c.3537	p.P1179	1.000	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NEO1	HGNC	ENSG00000067141				140	0	0	59	13	18.0556
ARNT2	0	genome.wustl.edu	37	15	80743280	80743280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	15	80743280	80743280	G	A	SNP	ARNT2	ENST00000303329	human	ensembl	74_37	+1	known	missense	c.91	p.G31R	0.972	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT2	HGNC	ENSG00000172379				236	1	0.421941	98	25	20.3252
ARNT2	0	genome.wustl.edu	37	15	80867400	80867400	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	15	80867400	80867400	T	C	SNP	ARNT2	ENST00000303329	human	ensembl	74_37	+1	known	missense	c.1462	p.S488P	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT2	HGNC	ENSG00000172379				307	0	0	143	23	13.8554
ZNF592	0	genome.wustl.edu	37	15	85328011	85328011	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	15	85328011	85328011	A	G	SNP	ZNF592	ENST00000299927	human	ensembl	74_37	+1	known	missense	c.2105	p.D702G	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716				109	0	0	41	8	16.3265
SNX29	0	genome.wustl.edu	37	16	12571649	12571649	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	16	12571649	12571649	A	C	SNP	SNX29	ENST00000306030	human	ensembl	74_37	+1	known	missense	c.956	p.K319T	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471				85	0	0	21	4	16
MYH11	0	genome.wustl.edu	37	16	15818135	15818135	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	16	15818135	15818135	A	C	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	missense	c.4269	p.D1423E	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				95	0	0	49	7	12.5
IGFALS	0	genome.wustl.edu	37	16	1841347	1841347	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	16	1841347	1841347	A	C	SNP	IGFALS	ENST00000415638	human	ensembl	74_37	-1	known	missense	c.1186	p.F396V	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	IGFALS	HGNC	ENSG00000099769				101	0	0	20	3	13.0435
ZNF598	0	genome.wustl.edu	37	16	2052383	2052383	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	16	2052383	2052383	A	C	SNP	ZNF598	ENST00000431526	human	ensembl	74_37	-1	known	missense	c.719	p.F240C	1.000	smart_Znf_C2H2-like	superfamily_PAH,smart_Znf_C2H2-like,pfscan_Znf_RING	-	no_errors	ZNF598	HGNC	ENSG00000167962				222	0	0	40	12	23.0769
ABCC12	0	genome.wustl.edu	37	16	48173097	48173097	+	Splice_Site	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	16	48173097	48173097	A	G	SNP	ABCC12	ENST00000533639	human	ensembl	74_37	-1	known	splice_site	c.806+2	e5+2	0.956	-	-	-	no_errors	ABCC12	HGNC	ENSG00000140798				230	0	0	76	6	7.31707
SEPT12	0	genome.wustl.edu	37	16	4835891	4835891	+	Splice_Site	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	16	4835891	4835891	T	G	SNP	SEPT12	ENST00000268231	human	ensembl	74_37	-1	known	splice_site	c.293-2	e3-2	1.000	-	-	-	no_errors	SEPT12	HGNC	ENSG00000140623				125	0	0	45	6	11.7647
NUP93	0	genome.wustl.edu	37	16	56857749	56857749	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	16	56857749	56857749	T	G	SNP	NUP93	ENST00000308159	human	ensembl	74_37	+1	known	missense	c.785	p.L262R	0.998	pfam_Nucleoporin_int_Nup93/Nic96	pfam_Nucleoporin_int_Nup93/Nic96	-	no_errors	NUP93	HGNC	ENSG00000102900				135	0	0	46	6	11.5385
NFATC3	0	genome.wustl.edu	37	16	68224974	68224974	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	16	68224974	68224974	C	T	SNP	NFATC3	ENST00000346183	human	ensembl	74_37	+1	known	missense	c.2402	p.S801F	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736				377	0	0	204	14	6.42202
WDR24	0	genome.wustl.edu	37	16	737013	737013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	16	737013	737013	C	T	SNP	WDR24	ENST00000248142	human	ensembl	74_37	-1	known	missense	c.1453	p.A485T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580				36	0	0	13	3	18.75
ZFP1	0	genome.wustl.edu	37	16	75203884	75203884	+	Silent	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	16	75203884	75203884	A	G	SNP	ZFP1	ENST00000393430	human	ensembl	74_37	+1	known	silent	c.876	p.G292	0.937	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP1	HGNC	ENSG00000184517				105	0	0	46	14	23.3333
DNAAF1	0	genome.wustl.edu	37	16	84189352	84189352	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	16	84189352	84189352	T	G	SNP	DNAAF1	ENST00000378553	human	ensembl	74_37	+1	known	missense	c.739	p.L247V	0.001	NULL	NULL	-	no_errors	DNAAF1	HGNC	ENSG00000154099				92	0	0	44	4	8.33333
MYH8	0	genome.wustl.edu	37	17	10322320	10322320	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	10322320	10322320	A	C	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	missense	c.238	p.F80V	1.000	superfamily_P-loop_NTPase	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				122	0	0	66	17	20.4819
MYOCD	0	genome.wustl.edu	37	17	12656407	12656407	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	12656407	12656407	G	T	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	missense	c.1802	p.C601F	0.005	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				196	1	0.507614	100	12	10.7143
TBC1D28	0	genome.wustl.edu	37	17	18541974	18541974	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	18541974	18541974	T	G	SNP	TBC1D28	ENST00000345096	human	ensembl	74_37	-1	known	missense	c.239	p.K80T	0.008	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom	-	no_errors	TBC1D28	HGNC	ENSG00000189375				159	0	0	59	11	15.7143
METTL16	0	genome.wustl.edu	37	17	2323552	2323552	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	2323552	2323552	C	T	SNP	METTL16	ENST00000263092	human	ensembl	74_37	-1	known	silent	c.1401	p.R467	0.994	pirsf_S-AdoMet-dep_MeTrfase_Mett10D	pfam_rRNA_lsu_MeTfrase_F-like,pirsf_S-AdoMet-dep_MeTrfase_Mett10D	-	no_errors	METTL16	HGNC	ENSG00000127804				313	0	0	118	28	19.1781
SKAP1	0	genome.wustl.edu	37	17	46262125	46262125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	46262125	46262125	G	A	SNP	SKAP1	ENST00000336915	human	ensembl	74_37	-1	known	missense	c.527	p.S176F	0.997	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	SKAP1	HGNC	ENSG00000141293				209	0	0	126	17	11.8881
GP1BA	0	genome.wustl.edu	37	17	4835939	4835939	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	4835939	4835939	T	G	SNP	GP1BA	ENST00000329125	human	ensembl	74_37	+1	known	missense	c.40	p.L14V	0.481	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP1BA	HGNC	ENSG00000185245				246	0	0	51	9	15
SKA2	0	genome.wustl.edu	37	17	57232569	57232569	+	RNA	SNP	C	C	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	57232569	57232569	C	A	SNP	SKA2	ENST00000583927	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.720	-	-	-	no_errors	SKA2	HGNC	ENSG00000182628				172	1	0.578035	62	16	20.5128
FTSJ3	0	genome.wustl.edu	37	17	61897524	61897524	+	Silent	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	61897524	61897524	T	G	SNP	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	silent	c.2266	p.R756	1.000	pfam_rRNA_MeTfrase_Spb1_C	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592				150	0	0	81	17	17.3469
SLC16A6	0	genome.wustl.edu	37	17	66267274	66267274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	66267274	66267274	C	T	SNP	SLC16A6	ENST00000327268	human	ensembl	74_37	-1	known	missense	c.1027	p.G343R	0.989	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932				139	0	0	63	10	13.6986
EIF4A1	0	genome.wustl.edu	37	17	7476162	7476162	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	7476162	7476162	G	A	SNP	EIF4A1	ENST00000293831	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A1	HGNC	ENSG00000161960				218	0	0	104	13	11.1111
DNAH2	0	genome.wustl.edu	37	17	7671346	7671346	+	Silent	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	7671346	7671346	T	C	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	silent	c.3804	p.F1268	0.997	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				111	0	0	57	12	17.3913
ENDOV	0	genome.wustl.edu	37	17	78409946	78409946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	17	78409946	78409946	G	A	SNP	ENDOV	ENST00000518907	human	ensembl	74_37	+1	putative	missense	c.146	p.R49H	0.000	NULL	pfam_Endonuclease-V	-	no_errors	ENDOV	HGNC	ENSG00000173818				78	0	0	30	5	14.2857
HRH4	0	genome.wustl.edu	37	18	22040828	22040828	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	18	22040828	22040828	C	T	SNP	HRH4	ENST00000256906	human	ensembl	74_37	+1	known	missense	c.136	p.L46F	0.919	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H4_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HRH4	HGNC	ENSG00000134489				261	0	0	119	22	15.6028
COLEC12	0	genome.wustl.edu	37	18	480739	480739	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	18	480739	480739	T	A	SNP	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	missense	c.26	p.E9V	1.000	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				138	0	0	40	14	25.9259
SMAD4	0	genome.wustl.edu	37	18	48604747	48604747	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	18	48604747	48604747	C	T	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	silent	c.1569	p.C523	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				135	0	0	63	9	12.5
SMAD4	0	genome.wustl.edu	37	18	48604748	48604748	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	18	48604748	48604748	T	A	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	missense	c.1570	p.W524R	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				136	0	0	65	9	12.1622
ATP9B	0	genome.wustl.edu	37	18	77096644	77096644	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	18	77096644	77096644	G	C	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	missense	c.2045	p.R682P	0.832	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				57	0	0	9	5	35.7143
ZNF441	0	genome.wustl.edu	37	19	11891663	11891663	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	11891663	11891663	G	A	SNP	ZNF441	ENST00000357901	human	ensembl	74_37	+1	known	missense	c.1024	p.G342R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044				183	0	0	117	16	12.0301
RTBDN	0	genome.wustl.edu	37	19	12940627	12940627	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	12940627	12940627	G	T	SNP	RTBDN	ENST00000322912	human	ensembl	74_37	-1	known	missense	c.263	p.A88E	0.049	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	RTBDN	HGNC	ENSG00000132026				60	0	0	21	3	12.5
FAM129C	0	genome.wustl.edu	37	19	17664149	17664149	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	17664149	17664149	T	C	SNP	FAM129C	ENST00000335393	human	ensembl	74_37	+1	known	missense	c.1871	p.F624S	0.119	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483				321	0	0	131	15	10.274
ZNF486	0	genome.wustl.edu	37	19	20295165	20295165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	20295165	20295165	G	A	SNP	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	missense	c.31	p.E11K	0.330	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229				477	0	0	167	19	10.2151
ZNF208	0	genome.wustl.edu	37	19	22157177	22157177	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	22157177	22157177	T	C	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.659	p.K220R	0.009	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				106	0	0	54	5	8.47458
ZNF676	0	genome.wustl.edu	37	19	22362948	22362948	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	22362948	22362948	T	G	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	missense	c.1571	p.K524T	0.060	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				127	0	0	79	17	17.7083
TLE2	0	genome.wustl.edu	37	19	3005565	3005565	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	3005565	3005565	G	A	SNP	TLE2	ENST00000262953	human	ensembl	74_37	-1	known	missense	c.1766	p.T589M	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717				42	0	0	13	5	27.7778
CD22	0	genome.wustl.edu	37	19	35832422	35832422	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	35832422	35832422	T	A	SNP	CD22	ENST00000085219	human	ensembl	74_37	+1	known	missense	c.1684	p.S562T	0.883	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CD22	HGNC	ENSG00000012124				168	0	0	36	8	18.1818
TBXA2R	0	genome.wustl.edu	37	19	3600235	3600235	+	Splice_Site	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	3600235	3600235	C	T	SNP	TBXA2R	ENST00000589966	human	ensembl	74_37	-1	putative	splice_site	c.397+1	e1+1	1.000	-	-	-	no_errors	TBXA2R	HGNC	ENSG00000006638				47	0	0	5	4	44.4444
APLP1	0	genome.wustl.edu	37	19	36369820	36369820	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	36369820	36369820	C	A	SNP	APLP1	ENST00000221891	human	ensembl	74_37	+1	known	missense	c.1679	p.P560H	1.000	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290				185	0	0	61	8	11.5942
TYROBP	0	genome.wustl.edu	37	19	36398163	36398163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	36398163	36398163	G	A	SNP	TYROBP	ENST00000262629	human	ensembl	74_37	-1	known	missense	c.233	p.A78V	0.842	NULL	NULL	-	no_errors	TYROBP	HGNC	ENSG00000011600				26	0	0	5	3	37.5
ZNF566	0	genome.wustl.edu	37	19	36940481	36940481	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	36940481	36940481	T	C	SNP	ZNF566	ENST00000392170	human	ensembl	74_37	-1	known	missense	c.658	p.K220E	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF566	HGNC	ENSG00000186017				125	0	0	72	22	23.4043
SNRPA	0	genome.wustl.edu	37	19	41263270	41263270	+	Splice_Site	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	41263270	41263270	A	G	SNP	SNRPA	ENST00000599570	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	SNRPA	HGNC	ENSG00000077312				88	0	0	30	4	11.7647
CYP2A13	0	genome.wustl.edu	37	19	41595958	41595958	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	41595958	41595958	C	T	SNP	CYP2A13	ENST00000330436	human	ensembl	74_37	+1	known	missense	c.350	p.A117V	0.109	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838				47	0	0	14	5	26.3158
CCDC94	0	genome.wustl.edu	37	19	4249309	4249309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	4249309	4249309	G	A	SNP	CCDC94	ENST00000262962	human	ensembl	74_37	+1	known	missense	c.109	p.A37T	1.000	pfam_CWC16	pfam_CWC16	-	no_errors	CCDC94	HGNC	ENSG00000105248				47	0	0	19	4	17.3913
CIC	0	genome.wustl.edu	37	19	42795827	42795827	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	42795827	42795827	G	C	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.2816	p.G939A	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				238	1	0.41841	43	20	31.746
PSG6	0	genome.wustl.edu	37	19	43420327	43420327	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	43420327	43420327	C	T	SNP	PSG6	ENST00000292125	human	ensembl	74_37	-1	known	missense	c.377	p.R126Q	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG6	HGNC	ENSG00000170848				416	0	0	275	22	7.40741
PSG11	0	genome.wustl.edu	37	19	43528974	43528974	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	43528974	43528974	G	T	SNP	PSG11	ENST00000320078	human	ensembl	74_37	-1	known	missense	c.299	p.T100K	0.513	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG11	HGNC	ENSG00000243130				443	0	0	229	29	11.2403
HDGFRP2	0	genome.wustl.edu	37	19	4475525	4475525	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	4475525	4475525	A	C	SNP	HDGFRP2	ENST00000301284	human	ensembl	74_37	+1	known	missense	c.233	p.N78T	1.000	NULL	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	HDGFRP2	Uniprot_gn	ENSG00000167674				122	0	0	43	4	8.51064
CCDC114	0	genome.wustl.edu	37	19	48807367	48807367	+	Silent	SNP	C	C	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	48807367	48807367	C	A	SNP	CCDC114	ENST00000315396	human	ensembl	74_37	-1	known	silent	c.585	p.L195	0.998	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479				112	0	0	58	4	6.45161
SLC6A16	0	genome.wustl.edu	37	19	49813671	49813671	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	49813671	49813671	C	A	SNP	SLC6A16	ENST00000335875	human	ensembl	74_37	-1	known	missense	c.512	p.G171V	0.996	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127				49	0	0	17	5	22.7273
KCNC3	0	genome.wustl.edu	37	19	50826555	50826555	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	50826555	50826555	T	G	SNP	KCNC3	ENST00000477616	human	ensembl	74_37	-1	known	missense	c.1655	p.K552T	1.000	prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_K_chnl_volt-dep_Kv3_ID,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3.3,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC3	HGNC	ENSG00000131398				72	0	0	22	6	21.4286
ZNF331	0	genome.wustl.edu	37	19	54080139	54080139	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	54080139	54080139	A	G	SNP	ZNF331	ENST00000253144	human	ensembl	74_37	+1	known	missense	c.325	p.K109E	0.366	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF331	HGNC	ENSG00000130844				139	0	0	56	17	23.2877
KIR3DL1	0	genome.wustl.edu	37	19	55331283	55331283	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	55331283	55331283	A	C	SNP	KIR3DL1	ENST00000402254	human	ensembl	74_37	+1	known	missense	c.471	p.K157N	0.005	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL1	HGNC	ENSG00000167633				158	0	0	68	27	28.4211
PTPRH	0	genome.wustl.edu	37	19	55708037	55708037	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	55708037	55708037	G	A	SNP	PTPRH	ENST00000376350	human	ensembl	74_37	-1	known	missense	c.2110	p.R704W	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031				98	0	0	49	9	15.5172
ZNF470	0	genome.wustl.edu	37	19	57088127	57088127	+	Silent	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	57088127	57088127	T	C	SNP	ZNF470	ENST00000330619	human	ensembl	74_37	+1	known	silent	c.330	p.D110	0.006	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016				96	0	0	62	6	8.82353
ZNF805	0	genome.wustl.edu	37	19	57765493	57765493	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	57765493	57765493	T	G	SNP	ZNF805	ENST00000414468	human	ensembl	74_37	+1	known	missense	c.1306	p.F436V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524				77	0	0	38	14	26.9231
ZNF551	0	genome.wustl.edu	37	19	58198809	58198809	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	58198809	58198809	G	A	SNP	ZNF551	ENST00000282296	human	ensembl	74_37	+1	known	missense	c.1166	p.R389K	0.005	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF551	HGNC	ENSG00000204519				138	0	0	86	17	16.5049
ELAVL1	0	genome.wustl.edu	37	19	8056617	8056617	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	8056617	8056617	G	A	SNP	ELAVL1	ENST00000351593	human	ensembl	74_37	-1	known	missense	c.164	p.P55L	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044				169	0	0	86	11	11.3402
SLC9A2	0	genome.wustl.edu	37	2	103318883	103318883	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	103318883	103318883	A	C	SNP	SLC9A2	ENST00000233969	human	ensembl	74_37	+1	known	missense	c.1767	p.K589N	1.000	prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616				105	0	0	49	9	15.5172
RGPD3	0	genome.wustl.edu	37	2	107049650	107049650	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	107049650	107049650	T	G	SNP	RGPD3	ENST00000304514	human	ensembl	74_37	-1	known	missense	c.2297	p.N766T	0.972	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165				614	0	0	281	25	8.16993
PDIA6	0	genome.wustl.edu	37	2	10927522	10927522	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	10927522	10927522	C	T	SNP	PDIA6	ENST00000381611	human	ensembl	74_37	-1	known	missense	c.1057	p.A353T	0.966	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Disulphide_isomerase	-	no_errors	PDIA6	HGNC	ENSG00000143870				119	0	0	50	13	20.6349
RANBP2	0	genome.wustl.edu	37	2	109383177	109383177	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	109383177	109383177	A	T	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.6182	p.K2061I	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				626	0	0	319	52	14.0162
MERTK	0	genome.wustl.edu	37	2	112786254	112786254	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	112786254	112786254	G	A	SNP	MERTK	ENST00000295408	human	ensembl	74_37	+1	known	nonsense	c.2813	p.W938*	0.949	superfamily_Rhodanese-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208				90	0	0	44	8	15.3846
TUBA3D	0	genome.wustl.edu	37	2	132240409	132240409	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	132240409	132240409	C	T	SNP	TUBA3D	ENST00000321253	human	ensembl	74_37	+1	known	silent	c.1341	p.G447	0.751	NULL	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886				246	0	0	93	19	16.9643
CSRNP3	0	genome.wustl.edu	37	2	166535277	166535277	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	166535277	166535277	G	T	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	nonsense	c.772	p.E258*	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				77	0	0	55	8	12.6984
TTN	0	genome.wustl.edu	37	2	179429558	179429558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	179429558	179429558	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.73597	p.G24533S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				57	0	0	40	6	13.0435
FAM171B	0	genome.wustl.edu	37	2	187627498	187627498	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	187627498	187627498	A	G	SNP	FAM171B	ENST00000304698	human	ensembl	74_37	+1	known	missense	c.2429	p.K810R	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369				49	0	0	33	7	17.5
SDPR	0	genome.wustl.edu	37	2	192711174	192711174	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	192711174	192711174	A	C	SNP	SDPR	ENST00000304141	human	ensembl	74_37	-1	known	missense	c.478	p.F160V	1.000	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497				29	0	0	15	2	11.7647
PRR21	0	genome.wustl.edu	37	2	240981444	240981444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	240981444	240981444	C	T	SNP	PRR21	ENST00000408934	human	ensembl	74_37	-1	known	missense	c.956	p.R319Q	0.000	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961				180	0	0	60	7	10.4478
TMEM178A	0	genome.wustl.edu	37	2	39944200	39944200	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	39944200	39944200	G	A	SNP	TMEM178A	ENST00000281961	human	ensembl	74_37	+1	known	missense	c.703	p.D235N	1.000	NULL	NULL	-	no_errors	TMEM178A	HGNC	ENSG00000152154				189	0	0	83	15	15.3061
SOCS5	0	genome.wustl.edu	37	2	46986595	46986595	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	46986595	46986595	A	G	SNP	SOCS5	ENST00000306503	human	ensembl	74_37	+1	known	missense	c.926	p.E309G	0.998	NULL	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS5	HGNC	ENSG00000171150				100	0	0	51	13	20.3125
ERLEC1	0	genome.wustl.edu	37	2	54014465	54014465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	54014465	54014465	G	A	SNP	ERLEC1	ENST00000185150	human	ensembl	74_37	+1	known	missense	c.118	p.D40N	1.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	ERLEC1	HGNC	ENSG00000068912				177	0	0	64	4	5.88235
EFEMP1	0	genome.wustl.edu	37	2	56144910	56144910	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	56144910	56144910	T	G	SNP	EFEMP1	ENST00000355426	human	ensembl	74_37	-1	known	missense	c.407	p.N136T	1.000	NULL	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380				138	0	0	46	9	16.3636
FAM161A	0	genome.wustl.edu	37	2	62066566	62066566	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	62066566	62066566	G	T	SNP	FAM161A	ENST00000405894	human	ensembl	74_37	-1	known	missense	c.1573	p.Q525K	0.150	pfam_UPF0564	pfam_UPF0564	-	no_errors	FAM161A	HGNC	ENSG00000170264				123	0	0	34	3	8.10811
RAB11FIP5	0	genome.wustl.edu	37	2	73303283	73303283	+	Silent	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	73303283	73303283	G	A	SNP	RAB11FIP5	ENST00000258098	human	ensembl	74_37	-1	known	silent	c.1596	p.A532	0.003	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631				367	0	0	123	13	9.55882
PROM2	0	genome.wustl.edu	37	2	95947106	95947106	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	2	95947106	95947106	T	C	SNP	PROM2	ENST00000317620	human	ensembl	74_37	+1	known	missense	c.1544	p.L515P	0.998	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066				74	0	0	27	4	12.9032
ERGIC3	0	genome.wustl.edu	37	20	34136347	34136347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	20	34136347	34136347	C	T	SNP	ERGIC3	ENST00000447986	human	ensembl	74_37	+1	known	missense	c.547	p.R183W	1.000	pfam_Erv_C	pfam_Erv_C	-	no_errors	ERGIC3	HGNC	ENSG00000125991				59	0	0	35	5	12.5
ZNF831	0	genome.wustl.edu	37	20	57829765	57829765	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	20	57829765	57829765	C	T	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	silent	c.5001	p.S1667	0.949	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				123	0	0	47	7	12.963
ABCG1	0	genome.wustl.edu	37	21	43714709	43714709	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	21	43714709	43714709	T	G	SNP	ABCG1	ENST00000398437	human	ensembl	74_37	+1	known	missense	c.2185	p.F729V	1.000	pfam_ABC_2_trans,tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179				80	0	0	41	5	10.8696
ITGB2	0	genome.wustl.edu	37	21	46311735	46311735	+	Silent	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	21	46311735	46311735	G	A	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	silent	c.1401	p.C467	0.279	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255				92	0	0	23	3	11.5385
PI4KA	0	genome.wustl.edu	37	22	21066897	21066897	+	Silent	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	22	21066897	21066897	G	A	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	silent	c.5679	p.C1893	0.710	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973				10	0	0	7	4	36.3636
ZNF280B	0	genome.wustl.edu	37	22	22842771	22842771	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	22	22842771	22842771	T	G	SNP	ZNF280B	ENST00000360412	human	ensembl	74_37	-1	known	missense	c.953	p.N318T	0.996	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280B	HGNC	ENSG00000198477				190	0	0	77	15	16.3043
SEZ6L	0	genome.wustl.edu	37	22	26692998	26692998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	22	26692998	26692998	C	T	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	missense	c.1114	p.R372W	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095				46	0	0	14	3	17.6471
SEZ6L	0	genome.wustl.edu	37	22	26695018	26695018	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	22	26695018	26695018	T	C	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	missense	c.1231	p.S411P	0.975	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095				66	0	0	28	2	6.66667
NEFH	0	genome.wustl.edu	37	22	29884869	29884869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	22	29884869	29884869	G	A	SNP	NEFH	ENST00000310624	human	ensembl	74_37	+1	known	missense	c.1240	p.G414S	1.000	NULL	pfam_IF,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285				177	0	0	79	9	10.2273
MTMR3	0	genome.wustl.edu	37	22	30421750	30421750	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	22	30421750	30421750	A	G	SNP	MTMR3	ENST00000401950	human	ensembl	74_37	+1	known	missense	c.3557	p.D1186G	1.000	superfamily_Znf_FYVE_PHD	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330				150	0	0	56	13	18.8406
APOBEC3H	0	genome.wustl.edu	37	22	39498015	39498015	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	22	39498015	39498015	C	G	SNP	APOBEC3H	ENST00000442487	human	ensembl	74_37	+1	known	missense	c.511	p.R171G	0.000	pfam_APOBEC_C	pfam_APOBEC_N,pfam_APOBEC_C,pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3H	HGNC	ENSG00000100298				119	0	0	29	18	38.2979
PKDREJ	0	genome.wustl.edu	37	22	46657285	46657285	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	22	46657285	46657285	C	A	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.1935	p.L645F	0.132	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				213	1	0.46729	74	10	11.9048
BBX	0	genome.wustl.edu	37	3	107491699	107491699	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	107491699	107491699	A	C	SNP	BBX	ENST00000325805	human	ensembl	74_37	+1	known	missense	c.1131	p.Q377H	0.182	NULL	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	BBX	HGNC	ENSG00000114439				109	0	0	62	15	19.4805
SLC6A11	0	genome.wustl.edu	37	3	10975851	10975851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	10975851	10975851	C	T	SNP	SLC6A11	ENST00000254488	human	ensembl	74_37	+1	known	missense	c.1574	p.A525V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,superfamily_S-AdoMet_deCO2ase_core,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT3	-	no_errors	SLC6A11	HGNC	ENSG00000132164				127	0	0	59	4	6.34921
ANKRD28	0	genome.wustl.edu	37	3	15778572	15778572	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	15778572	15778572	A	T	SNP	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	missense	c.529	p.L177I	0.530	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560				219	0	0	85	18	17.4757
GHSR	0	genome.wustl.edu	37	3	172162986	172162986	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	172162986	172162986	A	G	SNP	GHSR	ENST00000241256	human	ensembl	74_37	-1	known	missense	c.1066	p.S356P	1.000	prints_GHS-R	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R,prints_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853				215	0	0	119	10	7.75194
PIK3CA	0	genome.wustl.edu	37	3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	178917478	178917478	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.353	p.G118D	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				79	0	0	54	8	12.9032
PIK3CA	0	genome.wustl.edu	37	3	178917669	178917669	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	178917669	178917669	T	C	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.544	p.Y182H	1.000	pfam_PI3K_Ras-bd_dom,smart_PI3K_Ras-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				141	0	0	70	19	21.3483
SCN11A	0	genome.wustl.edu	37	3	38951654	38951654	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	38951654	38951654	G	T	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	missense	c.1004	p.P335H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				119	0	0	51	4	7.27273
ZKSCAN7	0	genome.wustl.edu	37	3	44611431	44611431	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	44611431	44611431	A	G	SNP	ZKSCAN7	ENST00000273320	human	ensembl	74_37	+1	known	missense	c.829	p.K277E	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN7	HGNC	ENSG00000196345				218	0	0	82	17	17.1717
CDCP1	0	genome.wustl.edu	37	3	45153868	45153868	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	45153868	45153868	A	C	SNP	CDCP1	ENST00000296129	human	ensembl	74_37	-1	known	missense	c.362	p.L121R	1.000	NULL	superfamily_CUB_dom	-	no_errors	CDCP1	HGNC	ENSG00000163814				454	0	0	129	26	16.7742
SCAP	0	genome.wustl.edu	37	3	47456465	47456465	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	47456465	47456465	C	A	SNP	SCAP	ENST00000265565	human	ensembl	74_37	-1	known	missense	c.3158	p.S1053I	0.550	superfamily_WD40_repeat_dom	pfam_Patched,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_SSD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SCAP	HGNC	ENSG00000114650				66	0	0	29	9	23.6842
RHOA	0	genome.wustl.edu	37	3	49413010	49413010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	49413010	49413010	G	A	SNP	RHOA	ENST00000418115	human	ensembl	74_37	-1	known	missense	c.13	p.R5W	0.997	superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560				107	0	0	64	15	18.9873
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				266	0	0	50	5	9.09091
RBM6	0	genome.wustl.edu	37	3	50103862	50103862	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	50103862	50103862	G	T	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	missense	c.2870	p.C957F	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				324	0	0	122	10	7.57576
CACNA2D3	0	genome.wustl.edu	37	3	55038842	55038842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	3	55038842	55038842	G	A	SNP	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	missense	c.2743	p.D915N	0.929	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				109	0	0	39	4	9.30233
CENPE	0	genome.wustl.edu	37	4	104030045	104030045	+	Silent	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	4	104030045	104030045	A	C	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	silent	c.7926	p.S2642	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				123	0	0	74	12	13.9535
NDST4	0	genome.wustl.edu	37	4	115998026	115998026	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	4	115998026	115998026	T	G	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	missense	c.167	p.K56T	0.983	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653				59	0	0	55	6	9.83607
HSPA4L	0	genome.wustl.edu	37	4	128726362	128726362	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	4	128726362	128726362	A	G	SNP	HSPA4L	ENST00000439123	human	ensembl	74_37	+1	known	missense	c.1213	p.R405G	0.998	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4L	HGNC	ENSG00000164070				77	0	0	33	5	13.1579
PCDH10	0	genome.wustl.edu	37	4	134072953	134072953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	4	134072953	134072953	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.1658	p.A553V	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				134	0	0	68	7	9.33333
TRIM2	0	genome.wustl.edu	37	4	154216607	154216607	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	4	154216607	154216607	A	G	SNP	TRIM2	ENST00000338700	human	ensembl	74_37	+1	known	missense	c.929	p.E310G	0.997	smart_Bbox_C	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654				76	0	0	24	3	11.1111
GALNT7	0	genome.wustl.edu	37	4	174169235	174169235	+	Silent	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	4	174169235	174169235	A	G	SNP	GALNT7	ENST00000265000	human	ensembl	74_37	+1	known	silent	c.231	p.G77	0.942	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT7	HGNC	ENSG00000109586				100	0	0	47	6	11.3208
WWC2	0	genome.wustl.edu	37	4	184233538	184233538	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	4	184233538	184233538	G	C	SNP	WWC2	ENST00000448232	human	ensembl	74_37	+1	known	missense	c.3501	p.E1167D	1.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC2	HGNC	ENSG00000151718				217	0	0	62	9	12.6761
SEL1L3	0	genome.wustl.edu	37	4	25849031	25849031	+	Silent	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	4	25849031	25849031	C	T	SNP	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	silent	c.618	p.Q206	0.010	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490				112	0	0	38	3	7.31707
NSG1	0	genome.wustl.edu	37	4	4389469	4389469	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	4	4389469	4389469	T	C	SNP	NSG1	ENST00000397958	human	ensembl	74_37	+1	known	missense	c.113	p.F38S	1.000	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	pfam_Calcyon_neuron-sp,pirsf_Calcyon_neuron-sp	-	no_errors	NSG1	Uniprot_gn	ENSG00000168824				110	1	0.900901	38	6	13.6364
DCK	0	genome.wustl.edu	37	4	71889409	71889409	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	4	71889409	71889409	C	A	SNP	DCK	ENST00000286648	human	ensembl	74_37	+1	known	missense	c.535	p.Q179K	1.000	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase	-	no_errors	DCK	HGNC	ENSG00000156136				113	0	0	55	11	16.6667
SLC4A4	0	genome.wustl.edu	37	4	72316960	72316960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	4	72316960	72316960	G	A	SNP	SLC4A4	ENST00000425175	human	ensembl	74_37	+1	known	missense	c.1264	p.D422N	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493				100	1	0.990099	48	5	9.43396
NRG2	0	genome.wustl.edu	37	5	139422125	139422125	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	5	139422125	139422125	T	C	SNP	NRG2	ENST00000545385	human	ensembl	74_37	-1	known	missense	c.530	p.E177G	1.000	NULL	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom	-	no_errors	NRG2	HGNC	ENSG00000158458				69	0	0	23	3	11.5385
PCDHB5	0	genome.wustl.edu	37	5	140516596	140516596	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	5	140516596	140516596	A	G	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.1580	p.E527G	0.878	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				162	0	0	74	9	10.8434
PCDHB15	0	genome.wustl.edu	37	5	140627353	140627353	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	5	140627353	140627353	T	A	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.2207	p.L736Q	0.026	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				360	0	0	152	28	15.5556
PCDHGA2	0	genome.wustl.edu	37	5	140719560	140719560	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	5	140719560	140719560	A	C	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	missense	c.1022	p.N341T	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				218	0	0	112	25	18.2482
LSM11	0	genome.wustl.edu	37	5	157181043	157181043	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	5	157181043	157181043	A	C	SNP	LSM11	ENST00000286307	human	ensembl	74_37	+1	known	missense	c.620	p.K207T	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM11	HGNC	ENSG00000155858				110	0	0	43	11	20.3704
ENSG00000250992	0	genome.wustl.edu	37	5	175467765	175467765	+	RNA	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	5	175467765	175467765	A	C	SNP	ENSG00000250992	ENST00000509643	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.538	-	-	-	no_errors	RP11-826N14.1	Clone_based_vega_gene	ENSG00000250992				47	0	0	17	3	15
RAI14	0	genome.wustl.edu	37	5	34811167	34811167	+	Silent	SNP	C	C	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	5	34811167	34811167	C	A	SNP	RAI14	ENST00000515799	human	ensembl	74_37	+1	known	silent	c.510	p.I170	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_t-SNARE,superfamily_UBA-like,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560				388	0	0	178	31	14.8325
BDP1	0	genome.wustl.edu	37	5	70811942	70811942	+	Silent	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	5	70811942	70811942	T	C	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	silent	c.4704	p.T1568	0.001	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				40	0	0	15	3	16.6667
CEP85L	0	genome.wustl.edu	37	6	118804953	118804953	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	118804953	118804953	T	G	SNP	CEP85L	ENST00000368488	human	ensembl	74_37	-1	known	missense	c.1515	p.K505N	1.000	NULL	NULL	-	no_errors	CEP85L	HGNC	ENSG00000111860				87	0	0	50	7	12.2807
TBC1D7	0	genome.wustl.edu	37	6	13307828	13307828	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	13307828	13307828	T	G	SNP	TBC1D7	ENST00000607658	human	ensembl	74_37	-1	novel	missense	c.588	p.Q196H	1.000	NULL	NULL	-	no_errors	TBC1D7	HGNC	ENSG00000145979				234	0	0	81	17	17.3469
EYA4	0	genome.wustl.edu	37	6	133846387	133846387	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	133846387	133846387	A	G	SNP	EYA4	ENST00000367895	human	ensembl	74_37	+1	known	missense	c.1834	p.K612E	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319				93	0	0	54	4	6.89655
RANBP9	0	genome.wustl.edu	37	6	13644914	13644914	+	Silent	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	13644914	13644914	G	A	SNP	RANBP9	ENST00000011619	human	ensembl	74_37	-1	known	silent	c.975	p.V325	0.333	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP9	HGNC	ENSG00000010017				126	0	0	73	16	17.9775
PCMT1	0	genome.wustl.edu	37	6	150123407	150123407	+	Silent	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	150123407	150123407	G	A	SNP	PCMT1	ENST00000367384	human	ensembl	74_37	+1	known	silent	c.750	p.L250	1.000	pfam_PCMT,tigrfam_PCMT	pfam_PCMT,tigrfam_PCMT	-	no_errors	PCMT1	HGNC	ENSG00000120265				85	0	0	45	3	6.25
ULBP1	0	genome.wustl.edu	37	6	150290454	150290454	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	150290454	150290454	G	T	SNP	ULBP1	ENST00000229708	human	ensembl	74_37	+1	known	nonsense	c.583	p.E195*	0.001	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP1	HGNC	ENSG00000111981				273	1	0.364964	104	10	8.77193
RSPH3	0	genome.wustl.edu	37	6	159420551	159420551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	159420551	159420551	C	T	SNP	RSPH3	ENST00000252655	human	ensembl	74_37	-1	known	missense	c.458	p.R153Q	0.004	NULL	pfam_Radial_spoke_3	-	no_errors	RSPH3	HGNC	ENSG00000130363				123	0	0	65	4	5.7971
TTLL2	0	genome.wustl.edu	37	6	167754950	167754950	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	167754950	167754950	T	C	SNP	TTLL2	ENST00000239587	human	ensembl	74_37	+1	known	missense	c.1562	p.L521P	0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL2	HGNC	ENSG00000120440				124	0	0	50	11	18.0328
GABBR1	0	genome.wustl.edu	37	6	29574733	29574733	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	29574733	29574733	T	C	SNP	GABBR1	ENST00000377034	human	ensembl	74_37	-1	known	missense	c.2158	p.M720V	0.965	pfam_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Peripla_BP_I,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681				127	0	0	50	9	15.2542
HLA-B	0	genome.wustl.edu	37	6	31323293	31323293	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	31323293	31323293	G	T	SNP	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	missense	c.696	p.F232L	1.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-B	HGNC	ENSG00000234745				209	0	0	88	9	9.27835
HLA-B	0	genome.wustl.edu	37	6	31323294	31323294	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	31323294	31323294	A	T	SNP	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	missense	c.695	p.F232Y	1.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-B	HGNC	ENSG00000234745				215	0	0	89	9	9.18367
TUBB2B	0	genome.wustl.edu	37	6	3226489	3226489	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	3226489	3226489	G	A	SNP	TUBB2B	ENST00000259818	human	ensembl	74_37	-1	known	missense	c.181	p.P61S	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2B	HGNC	ENSG00000137285				55	0	0	25	5	16.6667
HCRTR2	0	genome.wustl.edu	37	6	55145185	55145185	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	6	55145185	55145185	C	T	SNP	HCRTR2	ENST00000370862	human	ensembl	74_37	+1	known	missense	c.1048	p.H350Y	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	-	no_errors	HCRTR2	HGNC	ENSG00000137252				100	0	0	96	13	11.9266
PRKRIP1	0	genome.wustl.edu	37	7	102016313	102016313	+	RNA	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	102016313	102016313	A	G	SNP	PRKRIP1	ENST00000469763	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRKRIP1	HGNC	ENSG00000128563				229	0	0	90	17	15.8879
FOXP2	0	genome.wustl.edu	37	7	114210930	114210930	+	Silent	SNP	A	A	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	114210930	114210930	A	T	SNP	FOXP2	ENST00000408937	human	ensembl	74_37	+1	known	silent	c.327	p.T109	0.993	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573				146	0	0	83	10	10.7527
MET	0	genome.wustl.edu	37	7	116397506	116397506	+	Silent	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	116397506	116397506	T	G	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	silent	c.1878	p.V626	1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_IPT,superfamily_Ig_E-set,smart_IPT	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				51	0	0	43	9	17.3077
AKR1B1	0	genome.wustl.edu	37	7	134136460	134136460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	134136460	134136460	C	T	SNP	AKR1B1	ENST00000285930	human	ensembl	74_37	-1	known	missense	c.112	p.V38I	0.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B1	HGNC	ENSG00000085662				65	0	0	36	4	10
BRAF	0	genome.wustl.edu	37	7	140453133	140453133	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	140453133	140453133	T	G	SNP	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	missense	c.1802	p.K601T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				113	0	0	61	13	17.5676
FAM115C	0	genome.wustl.edu	37	7	143421819	143421819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	143421819	143421819	G	A	SNP	FAM115C	ENST00000357344	human	ensembl	74_37	+1	known	missense	c.2534	p.G845E	0.000	NULL	NULL	-	no_errors	FAM115C	HGNC	ENSG00000170379				133	0	0	47	6	11.3208
OSBPL3	0	genome.wustl.edu	37	7	24905028	24905028	+	Silent	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	24905028	24905028	A	G	SNP	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	silent	c.606	p.S202	0.999	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882				258	1	0.3861	171	23	11.8557
DPY19L1	0	genome.wustl.edu	37	7	35057571	35057571	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	35057571	35057571	T	G	SNP	DPY19L1	ENST00000310974	human	ensembl	74_37	-1	known	missense	c.115	p.T39P	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L1	HGNC	ENSG00000173852				106	0	0	52	4	7.14286
GLI3	0	genome.wustl.edu	37	7	42005274	42005274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	42005274	42005274	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.3397	p.G1133R	0.137	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				181	0	0	116	12	9.375
POM121	0	genome.wustl.edu	37	7	72413896	72413896	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	72413896	72413896	A	G	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	missense	c.3364	p.T1122A	0.152	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313				61	0	0	21	3	12.5
ZSCAN21	0	genome.wustl.edu	37	7	99655484	99655484	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	99655484	99655484	A	C	SNP	ZSCAN21	ENST00000292450	human	ensembl	74_37	+1	known	missense	c.563	p.E188A	0.056	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529				74	0	0	20	4	16.6667
STAG3	0	genome.wustl.edu	37	7	99808704	99808704	+	Silent	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	7	99808704	99808704	G	A	SNP	STAG3	ENST00000317296	human	ensembl	74_37	+1	known	silent	c.3309	p.P1103	0.006	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923				155	0	0	52	11	17.4603
ZFPM2	0	genome.wustl.edu	37	8	106813505	106813505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	8	106813505	106813505	C	T	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	missense	c.1195	p.H399Y	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				128	0	0	69	9	11.5385
CSMD3	0	genome.wustl.edu	37	8	113418874	113418874	+	Silent	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	8	113418874	113418874	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.5688	p.V1896	0.747	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				128	0	0	71	10	12.3457
COL14A1	0	genome.wustl.edu	37	8	121170389	121170389	+	Silent	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	8	121170389	121170389	A	C	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	silent	c.109	p.R37	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				69	0	0	36	5	12.1951
NAPRT1	0	genome.wustl.edu	37	8	144658639	144658639	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	8	144658639	144658639	G	A	SNP	NAPRT1	ENST00000276844	human	ensembl	74_37	-1	known	nonsense	c.985	p.Q329*	0.995	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB	-	no_errors	NAPRT1	HGNC	ENSG00000147813				53	0	0	25	3	10.7143
CLN8	0	genome.wustl.edu	37	8	1728422	1728422	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	8	1728422	1728422	T	G	SNP	CLN8	ENST00000331222	human	ensembl	74_37	+1	known	missense	c.550	p.W184G	1.000	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	CLN8	HGNC	ENSG00000182372				115	0	0	57	11	16.1765
WRN	0	genome.wustl.edu	37	8	30938688	30938688	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	8	30938688	30938688	A	C	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	missense	c.1145	p.K382T	0.000	NULL	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				89	0	0	45	5	10
RP1	0	genome.wustl.edu	37	8	55542502	55542502	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	8	55542502	55542502	T	G	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.6060	p.N2020K	0.011	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				136	0	0	65	11	14.4737
INVS	0	genome.wustl.edu	37	9	103015323	103015323	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	103015323	103015323	A	T	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	nonsense	c.1369	p.R457*	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				131	0	0	49	5	9.25926
TXN	0	genome.wustl.edu	37	9	113006393	113006393	+	RNA	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	113006393	113006393	A	C	SNP	TXN	ENST00000487892	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.961	-	-	-	no_errors	TXN	HGNC	ENSG00000136810				40	0	0	9	2	18.1818
C9orf84	0	genome.wustl.edu	37	9	114454546	114454546	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	114454546	114454546	T	G	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	missense	c.3519	p.K1173N	0.021	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				166	0	0	101	11	9.82143
SLC46A2	0	genome.wustl.edu	37	9	115651953	115651953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	115651953	115651953	C	T	SNP	SLC46A2	ENST00000374228	human	ensembl	74_37	-1	known	missense	c.1009	p.G337S	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	SLC46A2	HGNC	ENSG00000119457				43	0	0	24	4	14.2857
TNC	0	genome.wustl.edu	37	9	117835903	117835903	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	117835903	117835903	C	T	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.3193	p.A1065T	0.004	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				58	0	0	39	9	18.75
OR1B1	0	genome.wustl.edu	37	9	125391471	125391471	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	125391471	125391471	A	G	SNP	OR1B1	ENST00000304833	human	ensembl	74_37	-1	known	missense	c.344	p.L115P	0.391	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1B1	HGNC	ENSG00000171484				65	0	0	38	7	15.5556
DBH	0	genome.wustl.edu	37	9	136516786	136516786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	136516786	136516786	G	A	SNP	DBH	ENST00000393056	human	ensembl	74_37	+1	known	missense	c.1222	p.A408T	1.000	superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454				104	0	0	27	9	25
GLT6D1	0	genome.wustl.edu	37	9	138518015	138518015	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	138518015	138518015	C	G	SNP	GLT6D1	ENST00000371763	human	ensembl	74_37	-1	known	missense	c.157	p.A53P	0.987	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GLT6D1	HGNC	ENSG00000204007				181	1	0.549451	48	12	20
SOHLH1	0	genome.wustl.edu	37	9	138588459	138588459	+	Silent	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	138588459	138588459	T	C	SNP	SOHLH1	ENST00000425225	human	ensembl	74_37	-1	known	silent	c.660	p.S220	0.027	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SOHLH1	HGNC	ENSG00000165643				74	0	0	19	4	17.3913
TUBBP5	0	genome.wustl.edu	37	9	141070064	141070064	+	RNA	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	141070064	141070064	G	A	SNP	TUBBP5	ENST00000290377	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247				78	0	0	25	7	21.875
MLLT3	0	genome.wustl.edu	37	9	20414419	20414419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	20414419	20414419	G	A	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	missense	c.425	p.P142L	0.993	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				55	0	0	35	4	10.2564
PIGO	0	genome.wustl.edu	37	9	35091599	35091599	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	9	35091599	35091599	G	A	SNP	PIGO	ENST00000341666	human	ensembl	74_37	-1	known	missense	c.2285	p.P762L	1.000	NULL	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282				140	0	0	54	6	10
ZMAT1	0	genome.wustl.edu	37	X	101138752	101138752	+	Silent	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	101138752	101138752	T	C	SNP	ZMAT1	ENST00000372782	human	ensembl	74_37	-1	known	silent	c.1647	p.K549	0.884	NULL	superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT1	HGNC	ENSG00000166432				122	0	0	69	12	14.8148
GLRA4	0	genome.wustl.edu	37	X	102978850	102978850	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	102978850	102978850	A	T	SNP	GLRA4	ENST00000372617	human	ensembl	74_37	-1	known	missense	c.511	p.S171T	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA4	HGNC	ENSG00000188828				110	0	0	51	10	16.3934
AIFM1	0	genome.wustl.edu	37	X	129267364	129267364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	129267364	129267364	C	T	SNP	AIFM1	ENST00000287295	human	ensembl	74_37	-1	known	missense	c.1372	p.A458T	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	AIFM1	HGNC	ENSG00000156709				832	0	0	351	52	12.9032
SAGE1	0	genome.wustl.edu	37	X	134987488	134987488	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	134987488	134987488	G	A	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	missense	c.391	p.A131T	0.012	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				170	0	0	85	22	20.5607
SAGE1	0	genome.wustl.edu	37	X	134991106	134991106	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	134991106	134991106	C	A	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	missense	c.1525	p.P509T	0.004	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				135	0	0	71	9	11.25
MAMLD1	0	genome.wustl.edu	37	X	149639020	149639020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	149639020	149639020	C	T	SNP	MAMLD1	ENST00000432680	human	ensembl	74_37	+1	known	missense	c.1100	p.T367M	0.359	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619				320	0	0	135	25	15.625
GABRA3	0	genome.wustl.edu	37	X	151424324	151424324	+	Silent	SNP	T	T	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	151424324	151424324	T	C	SNP	GABRA3	ENST00000370314	human	ensembl	74_37	-1	known	silent	c.477	p.S159	0.031	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677				237	0	0	132	26	16.4557
F8	0	genome.wustl.edu	37	X	154225316	154225316	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	154225316	154225316	A	C	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	missense	c.320	p.L107R	0.995	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				395	0	0	144	30	17.2414
BCOR	0	genome.wustl.edu	37	X	39916463	39916463	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	39916463	39916463	G	A	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	nonsense	c.4540	p.R1514*	0.936	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				76	0	0	36	6	14.2857
MED14	0	genome.wustl.edu	37	X	40513617	40513617	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	40513617	40513617	T	G	SNP	MED14	ENST00000324817	human	ensembl	74_37	-1	known	missense	c.4290	p.Q1430H	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182				116	0	0	54	9	14.2857
USP9X	0	genome.wustl.edu	37	X	41027344	41027344	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	41027344	41027344	A	G	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	missense	c.2509	p.K837E	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				129	0	0	64	16	20
ITIH6	0	genome.wustl.edu	37	X	54814956	54814956	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	54814956	54814956	A	C	SNP	ITIH6	ENST00000218436	human	ensembl	74_37	-1	known	missense	c.743	p.V248G	0.007	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH6	HGNC	ENSG00000102313				89	0	0	36	4	10
ATRX	0	genome.wustl.edu	37	X	76918944	76918944	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	76918944	76918944	G	T	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.4047	p.D1349E	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				82	0	0	45	7	13.4615
BRWD3	0	genome.wustl.edu	37	X	79978189	79978189	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	79978189	79978189	A	C	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	missense	c.1748	p.L583R	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				142	0	0	95	8	7.76699
CYLC1	0	genome.wustl.edu	37	X	83128752	83128752	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	83128752	83128752	G	T	SNP	CYLC1	ENST00000329312	human	ensembl	74_37	+1	known	missense	c.1036	p.D346Y	0.488	NULL	NULL	-	no_errors	CYLC1	HGNC	ENSG00000183035				48	0	0	29	5	14.7059
RPA4	0	genome.wustl.edu	37	X	96139827	96139827	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	X	96139827	96139827	G	A	SNP	RPA4	ENST00000373040	human	ensembl	74_37	+1	known	missense	c.518	p.R173H	0.000	pfam_RPA_C,pirsf_RPA32	pfam_RPA_C,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pirsf_RPA32	-	no_errors	RPA4	HGNC	ENSG00000204086				134	1	0.740741	96	13	11.9266
ZC3H12A	0	genome.wustl.edu	37	1	37949086	37949087	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	1	37949086	37949087	-	A	INS	ZC3H12A	ENST00000373087	human	ensembl	74_37	+1	known	frame_shift_ins	c.1674_1675	p.L559fs	0.954:1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874				166	0	0	65	7	9.72222
CSNK1G2-AS1	0	genome.wustl.edu	37	19	1954126	1954127	+	RNA	INS	-	-	A			TCGA-BR-8366-01A-11D-2340-08	TCGA-BR-8366-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e1abcee1-9890-44fc-b2b3-e506b7a7328b	5f6c1c99-0981-4fbf-93b5-8ad581ab25b6	19	1954126	1954127	-	A	INS	CSNK1G2-AS1	ENST00000314315	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CSNK1G2-AS1	HGNC	ENSG00000180846				52	0	0	34	2	5.55556
