Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AGL	0	genome.wustl.edu	37	1	100342155	100342155	+	Splice_Site	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	100342155	100342155	T	C	SNP	AGL	ENST00000294724	human	ensembl	74_37	+1	known	splice_site	c.1423+2	e10+2	0.994	-	-	-	no_errors	AGL	HGNC	ENSG00000162688				137	0	0	62	35	36.0825
S1PR1	0	genome.wustl.edu	37	1	101704655	101704655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	101704655	101704655	G	A	SNP	S1PR1	ENST00000305352	human	ensembl	74_37	+1	known	missense	c.115	p.A39T	0.006	prints_EDG1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_EDG1_rcpt,prints_S1P_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	S1PR1	HGNC	ENSG00000170989				138	0	0	58	32	35.5556
KIF1B	0	genome.wustl.edu	37	1	10336425	10336425	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	10336425	10336425	T	C	SNP	KIF1B	ENST00000263934	human	ensembl	74_37	+1	known	silent	c.987	p.D329	0.997	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523				62	0	0	37	6	13.9535
COL11A1	0	genome.wustl.edu	37	1	103379956	103379956	+	Silent	SNP	A	A	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	103379956	103379956	A	T	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	silent	c.3966	p.P1322	0.949	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				76	0	0	27	10	27.027
AMY2B	0	genome.wustl.edu	37	1	104114092	104114092	+	RNA	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	104114092	104114092	A	C	SNP	AMY2B	ENST00000491397	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	AMY2B	HGNC	ENSG00000240038				51	0	0	46	12	20.6897
CLCC1	0	genome.wustl.edu	37	1	109479933	109479933	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	109479933	109479933	C	A	SNP	CLCC1	ENST00000356970	human	ensembl	74_37	-1	known	missense	c.1149	p.E383D	0.833	pfam_Chloride_chnl_CLIC-like	pfam_Chloride_chnl_CLIC-like	-	no_errors	CLCC1	HGNC	ENSG00000121940				125	0	0	50	26	34.2105
WDR47	0	genome.wustl.edu	37	1	109553736	109553736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	109553736	109553736	C	T	SNP	WDR47	ENST00000400794	human	ensembl	74_37	-1	known	missense	c.953	p.R318H	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433				577	0	0	206	136	39.7661
CELSR2	0	genome.wustl.edu	37	1	109794579	109794579	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	109794579	109794579	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	silent	c.1878	p.G626	0.999	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				245	0	0	58	31	34.8315
CELSR2	0	genome.wustl.edu	37	1	109804465	109804465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	109804465	109804465	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.4333	p.G1445R	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				12	0	0	7	3	30
MOV10	0	genome.wustl.edu	37	1	113241375	113241375	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	113241375	113241375	G	A	SNP	MOV10	ENST00000357443	human	ensembl	74_37	+1	known	silent	c.2547	p.R849	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	MOV10	HGNC	ENSG00000155363				355	0	0	113	49	30.2469
PTCHD2	0	genome.wustl.edu	37	1	11595573	11595573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	11595573	11595573	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.3688	p.G1230S	1.000	pfam_Patched,pfam_MMPL_dom	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				151	0	0	66	12	15.3846
WDR3	0	genome.wustl.edu	37	1	118499758	118499758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	118499758	118499758	G	A	SNP	WDR3	ENST00000349139	human	ensembl	74_37	+1	known	missense	c.2521	p.E841K	0.119	pfam_SSU_processome_Utp12	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR3	HGNC	ENSG00000065183				267	0	0	123	84	40.5797
VWA1	0	genome.wustl.edu	37	1	1372687	1372687	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	1372687	1372687	G	A	SNP	VWA1	ENST00000476993	human	ensembl	74_37	+1	known	missense	c.454	p.G152S	0.754	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	VWA1	HGNC	ENSG00000179403				26	0	0	15	4	21.0526
PPIAL4G	0	genome.wustl.edu	37	1	143767741	143767741	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	143767741	143767741	A	G	SNP	PPIAL4G	ENST00000419275	human	ensembl	74_37	-1	known	silent	c.108	p.F36	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIAL4G	HGNC	ENSG00000236334				519	0	0	279	92	24.7978
PIAS3	0	genome.wustl.edu	37	1	145584029	145584029	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	145584029	145584029	G	A	SNP	PIAS3	ENST00000393045	human	ensembl	74_37	+1	known	silent	c.1260	p.P420	0.804	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS3	HGNC	ENSG00000131788				557	0	0	182	108	37.2414
NBPF20	0	genome.wustl.edu	37	1	148346675	148346675	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	148346675	148346675	A	G	SNP	NBPF20	ENST00000369202	human	ensembl	74_37	-1	known	silent	c.82	p.L28	0.026	NULL	pfam_NBPF_dom	-	no_errors	NBPF20	HGNC	ENSG00000203832				388	0	0	202	74	26.8116
ANP32E	0	genome.wustl.edu	37	1	150201415	150201415	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	150201415	150201415	C	A	SNP	ANP32E	ENST00000314136	human	ensembl	74_37	-1	known	missense	c.483	p.E161D	0.565	NULL	pfam_Leu-rich_rpt	-	no_errors	ANP32E	HGNC	ENSG00000143401				155	0	0	112	12	9.67742
TARS2	0	genome.wustl.edu	37	1	150460423	150460423	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	150460423	150460423	C	T	SNP	TARS2	ENST00000369064	human	ensembl	74_37	+1	known	silent	c.156	p.S52	0.001	NULL	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374				141	0	0	71	14	16.4706
POGZ	0	genome.wustl.edu	37	1	151400802	151400802	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	151400802	151400802	G	T	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.656	p.P219H	1.000	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				451	0	0	146	50	25.5102
TCHH	0	genome.wustl.edu	37	1	152080396	152080396	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	152080396	152080396	C	T	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.5297	p.R1766H	0.147	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				210	0	0	67	45	40.1786
FLG	0	genome.wustl.edu	37	1	152284505	152284505	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	152284505	152284505	C	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.2857	p.E953Q	0.002	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				780	1	0.128041	291	46	13.6499
FLG	0	genome.wustl.edu	37	1	152285028	152285028	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	152285028	152285028	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.2334	p.S778	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				745	0	0	299	140	31.8907
FLG	0	genome.wustl.edu	37	1	152285861	152285861	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	152285861	152285861	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	nonsense	c.1501	p.R501*	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				750	2	0.265957	250	134	34.8958
SPRR1B	0	genome.wustl.edu	37	1	153004968	153004968	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	153004968	153004968	C	T	SNP	SPRR1B	ENST00000307098	human	ensembl	74_37	+1	known	silent	c.147	p.C49	1.000	pfam_Cornifin	pfam_Cornifin	-	no_errors	SPRR1B	HGNC	ENSG00000169469				238	0	0	73	49	40.1639
SLC50A1	0	genome.wustl.edu	37	1	155108811	155108811	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	155108811	155108811	G	T	SNP	SLC50A1	ENST00000368401	human	ensembl	74_37	+1	known	nonsense	c.76	p.G26*	1.000	NULL	pfam_SWEET_sugar_transpr	-	no_errors	SLC50A1	HGNC	ENSG00000169241				40	0	0	5	3	37.5
DPM3	0	genome.wustl.edu	37	1	155112444	155112444	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	155112444	155112444	G	A	SNP	DPM3	ENST00000341298	human	ensembl	74_37	-1	known	silent	c.273	p.R91	1.000	pfam_DPM3	pfam_DPM3	-	no_errors	DPM3	HGNC	ENSG00000179085				191	0	0	48	30	38.4615
CLK2	0	genome.wustl.edu	37	1	155233068	155233068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	155233068	155233068	G	A	SNP	CLK2	ENST00000368361	human	ensembl	74_37	-1	known	missense	c.1441	p.R481C	0.978	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK2	HGNC	ENSG00000176444				88	0	0	27	13	32.5
ASH1L	0	genome.wustl.edu	37	1	155448699	155448699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	155448699	155448699	C	T	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.3962	p.R1321Q	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				166	0	0	87	49	36.0294
CD5L	0	genome.wustl.edu	37	1	157804523	157804523	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	157804523	157804523	A	G	SNP	CD5L	ENST00000368174	human	ensembl	74_37	-1	known	missense	c.392	p.F131S	0.002	NULL	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD5L	HGNC	ENSG00000073754				131	0	0	42	17	28.8136
SPTA1	0	genome.wustl.edu	37	1	158609686	158609686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	158609686	158609686	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.4849	p.R1617W	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				227	0	0	85	50	37.037
KCNJ9	0	genome.wustl.edu	37	1	160053937	160053937	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	160053937	160053937	C	T	SNP	KCNJ9	ENST00000368088	human	ensembl	74_37	+1	known	silent	c.117	p.R39	0.994	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.3	-	no_errors	KCNJ9	HGNC	ENSG00000162728				11	0	0	5	4	44.4444
FCRLA	0	genome.wustl.edu	37	1	161681533	161681533	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	161681533	161681533	C	T	SNP	FCRLA	ENST00000470841	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCRLA	HGNC	ENSG00000132185				46	0	0	21	7	25
FCRLB	0	genome.wustl.edu	37	1	161697260	161697260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	161697260	161697260	G	A	SNP	FCRLB	ENST00000367946	human	ensembl	74_37	+1	known	missense	c.944	p.R315Q	0.000	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCRLB	HGNC	ENSG00000162746				160	0	0	41	27	39.7059
MGST3	0	genome.wustl.edu	37	1	165624622	165624622	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	165624622	165624622	C	T	SNP	MGST3	ENST00000367886	human	ensembl	74_37	+1	known	nonsense	c.382	p.R128*	0.910	pfam_Membr-assoc_MAPEG	pfam_Membr-assoc_MAPEG	-	no_errors	MGST3	HGNC	ENSG00000143198				68	0	0	28	15	34.8837
SCYL3	0	genome.wustl.edu	37	1	169828337	169828337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	169828337	169828337	C	T	SNP	SCYL3	ENST00000367770	human	ensembl	74_37	-1	known	missense	c.1157	p.R386H	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457				65	0	0	26	20	43.4783
ATP13A2	0	genome.wustl.edu	37	1	17312850	17312850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	17312850	17312850	C	T	SNP	ATP13A2	ENST00000326735	human	ensembl	74_37	-1	known	missense	c.3409	p.V1137M	0.001	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A2	HGNC	ENSG00000159363				14	0	0	4	6	60
MRPS14	0	genome.wustl.edu	37	1	174992492	174992492	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	174992492	174992492	G	T	SNP	MRPS14	ENST00000367677	human	ensembl	74_37	-1	known	missense	c.53	p.P18H	0.000	NULL	NULL	-	no_errors	MRPS14	HGNC	ENSG00000120333				48	0	0	14	4	22.2222
TNN	0	genome.wustl.edu	37	1	175049336	175049336	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	175049336	175049336	G	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	silent	c.822	p.T274	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				104	0	0	32	17	34.6939
TNR	0	genome.wustl.edu	37	1	175355234	175355234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	175355234	175355234	C	T	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.1711	p.E571K	0.789	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				205	0	0	51	33	39.2857
RFWD2	0	genome.wustl.edu	37	1	175956141	175956141	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	175956141	175956141	G	A	SNP	RFWD2	ENST00000367669	human	ensembl	74_37	-1	known	nonsense	c.2071	p.R691*	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,superfamily_WD40_repeat_dom,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RFWD2	HGNC	ENSG00000143207				162	0	0	80	24	23.0769
TDRD5	0	genome.wustl.edu	37	1	179620047	179620047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	179620047	179620047	G	A	SNP	TDRD5	ENST00000444136	human	ensembl	74_37	+1	known	missense	c.1846	p.G616S	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782				237	0	0	81	46	36.2205
CACNA1E	0	genome.wustl.edu	37	1	181741306	181741306	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	181741306	181741306	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.5078	p.R1693H	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				234	0	0	66	20	23.2558
GLUL	0	genome.wustl.edu	37	1	182354926	182354926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	182354926	182354926	G	A	SNP	GLUL	ENST00000311223	human	ensembl	74_37	-1	known	missense	c.572	p.A191V	0.003	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821				627	0	0	186	115	38.206
RGL1	0	genome.wustl.edu	37	1	183885736	183885736	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	183885736	183885736	G	A	SNP	RGL1	ENST00000304685	human	ensembl	74_37	+1	known	silent	c.2010	p.S670	0.993	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344				183	1	0.543478	76	45	37.1901
HMCN1	0	genome.wustl.edu	37	1	186122926	186122926	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	186122926	186122926	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.15063	p.Y5021	0.866	pfam_G2_nidogen/fibulin_G2F,superfamily_GFP,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				107	0	0	41	28	40.5797
TPR	0	genome.wustl.edu	37	1	186326586	186326586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	186326586	186326586	G	A	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.1667	p.A556V	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				127	0	0	76	46	37.7049
C1orf27	0	genome.wustl.edu	37	1	186368101	186368101	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	186368101	186368101	A	G	SNP	C1orf27	ENST00000287859	human	ensembl	74_37	+1	known	missense	c.925	p.I309V	1.000	NULL	NULL	-	no_errors	C1orf27	HGNC	ENSG00000157181				46	0	0	32	4	11.1111
BRINP3	0	genome.wustl.edu	37	1	190067835	190067835	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	190067835	190067835	C	T	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	silent	c.1614	p.K538	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				166	0	0	79	53	40.1515
UBR4	0	genome.wustl.edu	37	1	19446794	19446794	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	19446794	19446794	T	C	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.10190	p.N3397S	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				164	0	0	71	4	5.33333
KCNT2	0	genome.wustl.edu	37	1	196300297	196300297	+	Silent	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	196300297	196300297	T	G	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	silent	c.2092	p.R698	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				259	0	0	140	79	36.0731
ZBTB41	0	genome.wustl.edu	37	1	197128758	197128758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	197128758	197128758	G	A	SNP	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	missense	c.2461	p.P821S	0.492	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888				114	0	0	83	45	35.1562
CACNA1S	0	genome.wustl.edu	37	1	201022686	201022686	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	201022686	201022686	G	A	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	silent	c.3696	p.S1232	0.999	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				129	0	0	35	25	41.6667
GPR37L1	0	genome.wustl.edu	37	1	202097070	202097070	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	202097070	202097070	C	A	SNP	GPR37L1	ENST00000367282	human	ensembl	74_37	+1	known	missense	c.832	p.P278T	0.482	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37L1	HGNC	ENSG00000170075				98	0	0	29	13	30.9524
PLA2G2A	0	genome.wustl.edu	37	1	20304940	20304940	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	20304940	20304940	T	C	SNP	PLA2G2A	ENST00000375111	human	ensembl	74_37	-1	known	missense	c.118	p.S40G	0.002	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	PLA2G2A	HGNC	ENSG00000188257				88	0	0	22	15	40.5405
LRRN2	0	genome.wustl.edu	37	1	204588700	204588700	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	204588700	204588700	C	G	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.421	p.A141P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				325	0	0	102	31	23.3083
SLC45A3	0	genome.wustl.edu	37	1	205632446	205632446	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	205632446	205632446	C	T	SNP	SLC45A3	ENST00000367145	human	ensembl	74_37	-1	known	missense	c.473	p.R158H	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A3	HGNC	ENSG00000158715				88	0	0	24	10	29.4118
PINK1	0	genome.wustl.edu	37	1	20975501	20975501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	20975501	20975501	G	A	SNP	PINK1	ENST00000321556	human	ensembl	74_37	+1	known	missense	c.1265	p.R422H	0.088	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PINK1	HGNC	ENSG00000158828				64	0	0	20	14	41.1765
SPATA17	0	genome.wustl.edu	37	1	217975157	217975157	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	217975157	217975157	C	T	SNP	SPATA17	ENST00000366933	human	ensembl	74_37	+1	known	nonsense	c.970	p.R324*	0.996	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPATA17	HGNC	ENSG00000162814				47	0	0	29	15	34.0909
TAF1A	0	genome.wustl.edu	37	1	222750877	222750877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	222750877	222750877	G	A	SNP	TAF1A	ENST00000350027	human	ensembl	74_37	-1	known	missense	c.514	p.R172W	1.000	pirsf_RNA_pol_I_TAF1A/TAFI48	pirsf_RNA_pol_I_TAF1A/TAFI48	-	no_errors	TAF1A	HGNC	ENSG00000143498				123	0	0	77	40	34.188
LBR	0	genome.wustl.edu	37	1	225598070	225598070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	225598070	225598070	G	A	SNP	LBR	ENST00000272163	human	ensembl	74_37	-1	known	missense	c.1237	p.R413C	0.195	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815				210	0	0	78	31	28.4404
ACBD3	0	genome.wustl.edu	37	1	226349293	226349293	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	226349293	226349293	G	A	SNP	ACBD3	ENST00000366812	human	ensembl	74_37	-1	known	nonsense	c.667	p.R223*	0.000	NULL	pfam_Acyl-CoA-binding_protein,superfamily_GOLD,superfamily_Acyl-CoA-binding_protein,pfscan_GOLD	-	no_errors	ACBD3	HGNC	ENSG00000182827				96	0	0	39	24	38.0952
PARP1	0	genome.wustl.edu	37	1	226568840	226568840	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	226568840	226568840	G	A	SNP	PARP1	ENST00000366794	human	ensembl	74_37	-1	known	missense	c.1229	p.A410V	0.855	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pirsf_NAD_ADPRT,pfscan_BRCT_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_Znf_PARP,pfam_PADR1,pfam_WGR_domain,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_WGR_domain,pirsf_NAD_ADPRT,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP1	HGNC	ENSG00000143799				93	0	0	45	24	34.7826
OBSCN	0	genome.wustl.edu	37	1	228430947	228430947	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	228430947	228430947	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.2993	p.A998G	0.015	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				50	0	0	10	9	47.3684
OBSCN	0	genome.wustl.edu	37	1	228509573	228509573	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	228509573	228509573	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.15031	p.A5011S	0.968	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				124	0	0	21	8	27.5862
TRIM11	0	genome.wustl.edu	37	1	228582330	228582330	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	228582330	228582330	G	A	SNP	TRIM11	ENST00000460651	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM11	HGNC	ENSG00000154370				17	0	0	5	6	54.5455
ABCB10	0	genome.wustl.edu	37	1	229685004	229685004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	229685004	229685004	C	T	SNP	ABCB10	ENST00000344517	human	ensembl	74_37	-1	known	missense	c.695	p.R232H	0.999	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB10	HGNC	ENSG00000135776				162	0	0	46	25	35.2113
GALNT2	0	genome.wustl.edu	37	1	230415295	230415295	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	230415295	230415295	C	T	SNP	GALNT2	ENST00000485438	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	GALNT2	HGNC	ENSG00000143641				18	0	0	4	7	63.6364
DISC1	0	genome.wustl.edu	37	1	231902976	231902976	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	231902976	231902976	G	A	SNP	DISC1	ENST00000439617	human	ensembl	74_37	+1	known	silent	c.1359	p.T453	0.535	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946				128	0	0	51	24	32
MAP10	0	genome.wustl.edu	37	1	232942451	232942451	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	232942451	232942451	T	C	SNP	MAP10	ENST00000418460	human	ensembl	74_37	+1	known	missense	c.1682	p.I561T	0.109	NULL	NULL	-	no_errors	MAP10	HGNC	ENSG00000212916				81	0	0	43	4	8.51064
KCNK1	0	genome.wustl.edu	37	1	233802686	233802686	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	233802686	233802686	G	T	SNP	KCNK1	ENST00000366621	human	ensembl	74_37	+1	known	missense	c.701	p.G234V	1.000	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TWIK1,prints_2pore_dom_K_chnl_TWIK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TWIK1,prints_2pore_dom_K_chnl_TWIK,prints_2pore_dom_K_chnl	-	no_errors	KCNK1	HGNC	ENSG00000135750				157	0	0	44	22	33.3333
ARID4B	0	genome.wustl.edu	37	1	235377281	235377281	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	235377281	235377281	C	T	SNP	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	silent	c.1644	p.E548	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				119	0	0	67	29	30.2083
NID1	0	genome.wustl.edu	37	1	236201453	236201453	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	236201453	236201453	G	T	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	nonsense	c.1236	p.C412*	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				170	0	0	63	40	38.835
RYR2	0	genome.wustl.edu	37	1	237936847	237936847	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	237936847	237936847	T	C	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.11692	p.Y3898H	1.000	pfam_RIH_assoc-dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				52	0	0	25	12	32.4324
ZNF496	0	genome.wustl.edu	37	1	247472944	247472944	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	247472944	247472944	G	A	SNP	ZNF496	ENST00000462139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	ZNF496	HGNC	ENSG00000162714				27	0	0	12	4	25
OR2M7	0	genome.wustl.edu	37	1	248487774	248487774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	248487774	248487774	C	T	SNP	OR2M7	ENST00000317965	human	ensembl	74_37	-1	known	missense	c.97	p.A33T	0.123	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M7	HGNC	ENSG00000177186				419	0	0	219	130	37.2493
SRRM1	0	genome.wustl.edu	37	1	24981444	24981444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	24981444	24981444	G	A	SNP	SRRM1	ENST00000447431	human	ensembl	74_37	+1	known	missense	c.1139	p.S380N	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	SRRM1	HGNC	ENSG00000133226				179	0	0	44	81	64.8
MAN1C1	0	genome.wustl.edu	37	1	26104703	26104703	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	26104703	26104703	C	T	SNP	MAN1C1	ENST00000374332	human	ensembl	74_37	+1	known	silent	c.1365	p.S455	0.186	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1C1	HGNC	ENSG00000117643				135	0	0	29	20	40.8163
CATSPER4	0	genome.wustl.edu	37	1	26526548	26526548	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	26526548	26526548	A	G	SNP	CATSPER4	ENST00000456354	human	ensembl	74_37	+1	known	missense	c.986	p.E329G	0.988	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782				34	0	0	17	9	34.6154
HMGN2	0	genome.wustl.edu	37	1	26801762	26801762	+	RNA	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	26801762	26801762	G	T	SNP	HMGN2	ENST00000460563	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGN2	HGNC	ENSG00000198830				11	0	0	8	11	57.8947
GPATCH3	0	genome.wustl.edu	37	1	27224206	27224206	+	Silent	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	27224206	27224206	G	T	SNP	GPATCH3	ENST00000361720	human	ensembl	74_37	-1	known	silent	c.462	p.S154	0.993	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746				37	0	0	17	3	15
DNAJC8	0	genome.wustl.edu	37	1	28527851	28527851	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	28527851	28527851	G	A	SNP	DNAJC8	ENST00000263697	human	ensembl	74_37	-1	known	nonsense	c.670	p.R224*	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC8	HGNC	ENSG00000126698				255	2	0.77821	113	52	31.5152
PRDM16	0	genome.wustl.edu	37	1	3350436	3350436	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	3350436	3350436	C	T	SNP	PRDM16	ENST00000378389	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PRDM16	HGNC	ENSG00000142611				37	0	0	10	23	69.697
AGO3	0	genome.wustl.edu	37	1	36474379	36474379	+	Splice_Site	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	36474379	36474379	G	A	SNP	AGO3	ENST00000373191	human	ensembl	74_37	+1	known	splice_site	c.881+1	e7+1	1.000	-	-	-	no_errors	AGO3	HGNC	ENSG00000126070				119	0	0	73	33	31.1321
AGO3	0	genome.wustl.edu	37	1	36505946	36505946	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	36505946	36505946	C	T	SNP	AGO3	ENST00000373191	human	ensembl	74_37	+1	known	silent	c.2076	p.C692	0.998	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO3	HGNC	ENSG00000126070				100	0	0	68	15	18.0723
CSF3R	0	genome.wustl.edu	37	1	36940984	36940984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	36940984	36940984	C	T	SNP	CSF3R	ENST00000373103	human	ensembl	74_37	-1	known	missense	c.355	p.A119T	0.990	NULL	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF3R	HGNC	ENSG00000119535				180	1	0.552486	61	6	8.95522
ENSG00000272153	0	genome.wustl.edu	37	1	3701819	3701819	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	3701819	3701819	C	T	SNP	ENSG00000272153	ENST00000607459	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP1-286D6.5	Clone_based_vega_gene	ENSG00000272153				123	0	0	11	30	73.1707
HPCAL4	0	genome.wustl.edu	37	1	40149704	40149704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	40149704	40149704	C	T	SNP	HPCAL4	ENST00000372844	human	ensembl	74_37	-1	known	missense	c.283	p.G95S	1.000	pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	HPCAL4	HGNC	ENSG00000116983				114	0	0	43	16	27.1186
SMAP2	0	genome.wustl.edu	37	1	40879887	40879887	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	40879887	40879887	G	A	SNP	SMAP2	ENST00000372718	human	ensembl	74_37	+1	known	silent	c.546	p.A182	0.609	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP2	HGNC	ENSG00000084070				68	0	0	13	31	70.4545
HIVEP3	0	genome.wustl.edu	37	1	41978959	41978959	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	41978959	41978959	C	T	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	missense	c.5933	p.R1978H	0.030	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				237	0	0	24	57	70.3704
TIE1	0	genome.wustl.edu	37	1	43770628	43770628	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	43770628	43770628	C	T	SNP	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	silent	c.165	p.D55	0.024	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056				10	0	0	3	5	62.5
ST3GAL3	0	genome.wustl.edu	37	1	44386577	44386577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	44386577	44386577	G	A	SNP	ST3GAL3	ENST00000262915	human	ensembl	74_37	+1	known	missense	c.1222	p.V408I	0.987	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL3	HGNC	ENSG00000126091				52	0	0	2	16	88.8889
KIF2C	0	genome.wustl.edu	37	1	45226082	45226082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	45226082	45226082	G	A	SNP	KIF2C	ENST00000372224	human	ensembl	74_37	+1	known	missense	c.1498	p.A500T	0.997	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2C	HGNC	ENSG00000142945				71	0	0	29	18	38.2979
BTF3L4	0	genome.wustl.edu	37	1	52530502	52530502	+	Silent	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	52530502	52530502	A	C	SNP	BTF3L4	ENST00000313334	human	ensembl	74_37	+1	known	silent	c.60	p.T20	1.000	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	BTF3L4	HGNC	ENSG00000134717				82	0	0	29	9	23.6842
NPHP4	0	genome.wustl.edu	37	1	5924518	5924518	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	5924518	5924518	G	A	SNP	NPHP4	ENST00000378156	human	ensembl	74_37	-1	known	silent	c.3876	p.G1292	0.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697				35	0	0	0	11	100
ROR1	0	genome.wustl.edu	37	1	64515460	64515460	+	Silent	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	64515460	64515460	C	A	SNP	ROR1	ENST00000371079	human	ensembl	74_37	+1	known	silent	c.261	p.P87	0.999	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR1	HGNC	ENSG00000185483				250	0	0	61	55	47.4138
SLC35D1	0	genome.wustl.edu	37	1	67470100	67470100	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	67470100	67470100	T	C	SNP	SLC35D1	ENST00000235345	human	ensembl	74_37	-1	known	missense	c.991	p.T331A	1.000	NULL	pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35D1	HGNC	ENSG00000116704				128	0	0	20	25	55.5556
C1orf141	0	genome.wustl.edu	37	1	67558998	67558998	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	67558998	67558998	T	C	SNP	C1orf141	ENST00000371006	human	ensembl	74_37	-1	known	missense	c.893	p.K298R	0.011	NULL	NULL	-	no_errors	C1orf141	HGNC	ENSG00000203963				137	0	0	73	54	42.5197
FUBP1	0	genome.wustl.edu	37	1	78430841	78430841	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	78430841	78430841	G	A	SNP	FUBP1	ENST00000436586	human	ensembl	74_37	-1	known	missense	c.611	p.P204L	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,pfam_DUF1897,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP1	HGNC	ENSG00000162613				256	0	0	122	72	37.1134
DDAH1	0	genome.wustl.edu	37	1	85816154	85816154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	85816154	85816154	C	T	SNP	DDAH1	ENST00000284031	human	ensembl	74_37	-1	known	missense	c.541	p.A181T	1.000	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH1	HGNC	ENSG00000153904				291	1	0.342466	124	14	10.1449
PKN2	0	genome.wustl.edu	37	1	89298759	89298759	+	Splice_Site	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	89298759	89298759	G	A	SNP	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	splice_site	c.2671-1	e21-1	1.000	-	-	-	no_errors	PKN2	HGNC	ENSG00000065243				36	0	0	16	11	40.7407
GBP1	0	genome.wustl.edu	37	1	89524752	89524752	+	RNA	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	89524752	89524752	A	G	SNP	GBP1	ENST00000493139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.160	-	-	-	no_errors	GBP1	HGNC	ENSG00000117228				43	0	0	20	14	41.1765
LRRC8B	0	genome.wustl.edu	37	1	90048782	90048782	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	90048782	90048782	G	A	SNP	LRRC8B	ENST00000330947	human	ensembl	74_37	+1	known	silent	c.573	p.S191	0.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8B	HGNC	ENSG00000197147				149	0	0	44	36	45
LOXL4	0	genome.wustl.edu	37	10	100022589	100022589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	100022589	100022589	G	A	SNP	LOXL4	ENST00000260702	human	ensembl	74_37	-1	known	missense	c.188	p.A63V	0.078	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL4	HGNC	ENSG00000138131				131	0	0	39	36	48
TMEM180	0	genome.wustl.edu	37	10	104233735	104233735	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	104233735	104233735	G	A	SNP	TMEM180	ENST00000238936	human	ensembl	74_37	+1	known	silent	c.1257	p.P419	0.037	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM180	HGNC	ENSG00000138111				52	0	0	19	6	24
WBP1L	0	genome.wustl.edu	37	10	104572451	104572451	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	104572451	104572451	A	T	SNP	WBP1L	ENST00000448841	human	ensembl	74_37	+1	known	missense	c.455	p.Q152L	1.000	NULL	pfam_Uncharacterised_WW-bd	-	no_errors	WBP1L	HGNC	ENSG00000166272				166	1	0.598802	57	34	37.3626
SORCS3	0	genome.wustl.edu	37	10	106899179	106899179	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	106899179	106899179	T	C	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.1237	p.Y413H	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				196	0	0	67	25	27.1739
SMC3	0	genome.wustl.edu	37	10	112361533	112361533	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	112361533	112361533	G	A	SNP	SMC3	ENST00000361804	human	ensembl	74_37	+1	known	missense	c.2783	p.R928Q	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC3	HGNC	ENSG00000108055				201	0	0	106	21	16.5354
ABLIM1	0	genome.wustl.edu	37	10	116203811	116203811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	116203811	116203811	C	T	SNP	ABLIM1	ENST00000277895	human	ensembl	74_37	-1	known	missense	c.1910	p.R637H	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM1	HGNC	ENSG00000099204				254	0	0	86	37	30.0813
PRLHR	0	genome.wustl.edu	37	10	120353838	120353838	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	120353838	120353838	C	T	SNP	PRLHR	ENST00000239032	human	ensembl	74_37	-1	known	missense	c.919	p.A307T	0.956	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prolrel_pep_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prolrel_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PRLHR	HGNC	ENSG00000119973				122	0	0	48	5	9.43396
BAG3	0	genome.wustl.edu	37	10	121431767	121431767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	121431767	121431767	C	T	SNP	BAG3	ENST00000369085	human	ensembl	74_37	+1	known	missense	c.508	p.R170W	1.000	NULL	pfam_BAG_domain,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_BAG_domain,pfscan_BAG_domain,pfscan_WW_dom	-	no_errors	BAG3	HGNC	ENSG00000151929				128	0	0	30	17	36.1702
MCMBP	0	genome.wustl.edu	37	10	121607133	121607133	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	121607133	121607133	A	G	SNP	MCMBP	ENST00000360003	human	ensembl	74_37	-1	known	silent	c.819	p.N273	0.968	pfam_MCM_complex-bd	pfam_MCM_complex-bd	-	no_errors	MCMBP	HGNC	ENSG00000197771				97	0	0	30	24	44.4444
PLEKHA1	0	genome.wustl.edu	37	10	124172489	124172489	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	124172489	124172489	T	C	SNP	PLEKHA1	ENST00000368990	human	ensembl	74_37	+1	known	silent	c.396	p.G132	0.636	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA1	HGNC	ENSG00000107679				76	0	0	53	9	14.5161
ADAM12	0	genome.wustl.edu	37	10	127787041	127787041	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	127787041	127787041	C	A	SNP	ADAM12	ENST00000368679	human	ensembl	74_37	-1	known	missense	c.949	p.G317C	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM12	HGNC	ENSG00000148848				296	0	0	124	28	18.4211
DOCK1	0	genome.wustl.edu	37	10	128904520	128904520	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	128904520	128904520	C	T	SNP	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	missense	c.2408	p.T803M	0.885	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				17	0	0	5	5	50
MKI67	0	genome.wustl.edu	37	10	129901620	129901620	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	129901620	129901620	T	C	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	silent	c.8484	p.S2828	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				175	0	0	73	42	36.5217
KNDC1	0	genome.wustl.edu	37	10	134996984	134996984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	134996984	134996984	C	T	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	missense	c.497	p.P166L	0.923	superfamily_Kinase-like_dom,smart_KIND	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				33	0	0	6	2	25
UTF1	0	genome.wustl.edu	37	10	135044804	135044804	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	135044804	135044804	C	T	SNP	UTF1	ENST00000304477	human	ensembl	74_37	+1	known	missense	c.884	p.P295L	1.000	NULL	NULL	-	no_errors	UTF1	HGNC	ENSG00000171794				31	0	0	6	6	50
KIAA1217	0	genome.wustl.edu	37	10	24831889	24831889	+	Silent	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	24831889	24831889	A	C	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	silent	c.3690	p.S1230	0.002	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				59	0	0	45	5	10
ARHGAP21	0	genome.wustl.edu	37	10	24874300	24874300	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	24874300	24874300	C	T	SNP	ARHGAP21	ENST00000396432	human	ensembl	74_37	-1	known	missense	c.4918	p.E1640K	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863				147	0	0	82	34	29.3103
GPR158	0	genome.wustl.edu	37	10	25464572	25464572	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	25464572	25464572	G	T	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.223	p.A75S	0.948	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				64	0	0	27	17	38.6364
MIR938	0	genome.wustl.edu	37	10	29891217	29891217	+	RNA	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	29891217	29891217	T	C	SNP	MIR938	ENST00000401216	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.039	-	-	-	no_errors	MIR938	HGNC	ENSG00000216035				54	0	0	18	7	28
NRP1	0	genome.wustl.edu	37	10	33475257	33475257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	33475257	33475257	C	T	SNP	NRP1	ENST00000265371	human	ensembl	74_37	-1	known	missense	c.2222	p.R741H	0.999	pirsf_Neuropilin,pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250				104	0	0	38	21	35.5932
AGAP4	0	genome.wustl.edu	37	10	46321485	46321485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	46321485	46321485	C	T	SNP	AGAP4	ENST00000448048	human	ensembl	74_37	-1	known	missense	c.1870	p.G624R	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP4	HGNC	ENSG00000188234				41	0	0	8	20	71.4286
A1CF	0	genome.wustl.edu	37	10	52596039	52596039	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	52596039	52596039	C	T	SNP	A1CF	ENST00000282641	human	ensembl	74_37	-1	known	silent	c.399	p.V133	0.993	pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	A1CF	HGNC	ENSG00000148584				106	0	0	57	30	34.4828
BICC1	0	genome.wustl.edu	37	10	60588642	60588642	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	60588642	60588642	C	T	SNP	BICC1	ENST00000373886	human	ensembl	74_37	+1	known	silent	c.2916	p.G972	0.995	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870				97	0	0	34	16	32
CCDC6	0	genome.wustl.edu	37	10	61574410	61574410	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	61574410	61574410	C	T	SNP	CCDC6	ENST00000263102	human	ensembl	74_37	-1	known	missense	c.686	p.R229Q	1.000	pfam_DUF2046	pfam_DUF2046	-	no_errors	CCDC6	HGNC	ENSG00000108091				79	0	0	33	26	44.0678
ANK3	0	genome.wustl.edu	37	10	61965576	61965576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	61965576	61965576	C	T	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.1267	p.G423S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				106	0	0	38	22	36.6667
HK1	0	genome.wustl.edu	37	10	71128991	71128991	+	Splice_Site	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	71128991	71128991	A	G	SNP	HK1	ENST00000448642	human	ensembl	74_37	+1	known	splice_site	c.697-2	e8-2	1.000	-	-	-	no_errors	HK1	HGNC	ENSG00000156515				63	0	0	30	13	30.2326
TBATA	0	genome.wustl.edu	37	10	72532314	72532314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	72532314	72532314	G	A	SNP	TBATA	ENST00000299290	human	ensembl	74_37	-1	known	missense	c.926	p.P309L	0.000	NULL	NULL	-	no_errors	TBATA	HGNC	ENSG00000166220				237	0	0	66	35	34.6535
SPOCK2	0	genome.wustl.edu	37	10	73848012	73848012	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	73848012	73848012	G	A	SNP	SPOCK2	ENST00000317376	human	ensembl	74_37	-1	known	silent	c.75	p.D25	0.757	NULL	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK2	HGNC	ENSG00000107742				42	0	0	16	3	15.7895
ITIH5	0	genome.wustl.edu	37	10	7657997	7657997	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	7657997	7657997	A	G	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.887	p.V296A	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				160	0	0	54	20	27.027
TAF3	0	genome.wustl.edu	37	10	8005989	8005989	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	8005989	8005989	T	C	SNP	TAF3	ENST00000344293	human	ensembl	74_37	+1	known	silent	c.516	p.D172	1.000	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632				108	0	0	51	16	23.8806
GATA3	0	genome.wustl.edu	37	10	8100708	8100708	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	8100708	8100708	G	A	SNP	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	missense	c.682	p.E228K	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				141	0	0	47	17	26.5625
BTAF1	0	genome.wustl.edu	37	10	93719750	93719750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	93719750	93719750	C	T	SNP	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	missense	c.1102	p.R368C	1.000	superfamily_ARM-type_fold	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				137	1	0.724638	66	33	33.3333
PIK3AP1	0	genome.wustl.edu	37	10	98469729	98469729	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	98469729	98469729	C	A	SNP	PIK3AP1	ENST00000339364	human	ensembl	74_37	-1	known	nonsense	c.25	p.G9*	0.002	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629				91	0	0	36	16	30.7692
GUCY1A2	0	genome.wustl.edu	37	11	106681137	106681137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	106681137	106681137	G	A	SNP	GUCY1A2	ENST00000282249	human	ensembl	74_37	-1	known	missense	c.1274	p.P425L	1.000	pfam_Haem_no_assoc-bd	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402				108	0	0	69	9	11.5385
CADM1	0	genome.wustl.edu	37	11	115102133	115102133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	115102133	115102133	C	T	SNP	CADM1	ENST00000452722	human	ensembl	74_37	-1	known	missense	c.502	p.A168T	0.999	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM1	HGNC	ENSG00000182985				148	0	0	69	29	29.5918
APOA5	0	genome.wustl.edu	37	11	116660973	116660973	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	116660973	116660973	G	A	SNP	APOA5	ENST00000227665	human	ensembl	74_37	-1	known	silent	c.972	p.F324	0.026	NULL	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243				123	0	0	34	11	24.4444
RNF214	0	genome.wustl.edu	37	11	117152789	117152789	+	Silent	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	117152789	117152789	C	A	SNP	RNF214	ENST00000300650	human	ensembl	74_37	+1	known	silent	c.1515	p.G505	0.995	NULL	pfscan_Znf_RING	-	no_errors	RNF214	HGNC	ENSG00000167257				429	1	0.232558	148	79	34.8018
NLRX1	0	genome.wustl.edu	37	11	119042071	119042071	+	RNA	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	119042071	119042071	A	G	SNP	NLRX1	ENST00000468765	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	NLRX1	HGNC	ENSG00000160703				64	0	0	17	4	19.0476
NLRX1	0	genome.wustl.edu	37	11	119053036	119053036	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	119053036	119053036	C	A	SNP	NLRX1	ENST00000292199	human	ensembl	74_37	+1	known	missense	c.2588	p.P863H	0.998	smart_Leu-rich_rpt_RNase_inh_sub-typ	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703				171	0	0	56	12	17.6471
C1QTNF5	0	genome.wustl.edu	37	11	119210226	119210226	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	119210226	119210226	C	T	SNP	C1QTNF5	ENST00000445041	human	ensembl	74_37	-1	known	missense	c.547	p.G183R	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF5	HGNC	ENSG00000223953				130	0	0	52	31	37.3494
USP2	0	genome.wustl.edu	37	11	119243941	119243941	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	119243941	119243941	C	T	SNP	USP2	ENST00000260187	human	ensembl	74_37	-1	known	missense	c.250	p.D84N	0.605	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP2	HGNC	ENSG00000036672				233	0	0	70	40	36.3636
SORL1	0	genome.wustl.edu	37	11	121367679	121367679	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	121367679	121367679	G	A	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	missense	c.860	p.R287Q	0.983	smart_VPS10	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				106	0	0	46	22	32.3529
BSX	0	genome.wustl.edu	37	11	122849972	122849972	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	122849972	122849972	C	T	SNP	BSX	ENST00000343035	human	ensembl	74_37	-1	known	silent	c.456	p.T152	0.797	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	BSX	HGNC	ENSG00000188909				219	0	0	48	23	32.3944
MUC5B	0	genome.wustl.edu	37	11	1269398	1269398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	1269398	1269398	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.11297	p.T3766I	0.002	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				32	0	0	23	2	8
TEAD1	0	genome.wustl.edu	37	11	12785940	12785940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	12785940	12785940	G	A	SNP	TEAD1	ENST00000361905	human	ensembl	74_37	+1	known	missense	c.116	p.G39E	1.000	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD1	HGNC	ENSG00000187079				128	0	0	78	8	9.30233
MUC5B	0	genome.wustl.edu	37	11	1280978	1280978	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	1280978	1280978	C	T	SNP	MUC5B	ENST00000527802	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	MUC5B	HGNC	ENSG00000117983				124	0	0	25	12	32.4324
ST14	0	genome.wustl.edu	37	11	130078396	130078396	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	130078396	130078396	C	T	SNP	ST14	ENST00000278742	human	ensembl	74_37	+1	known	missense	c.2086	p.R696C	1.000	pirsf_Peptidase_S1A_matripase,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Peptidase_S1A_matripase,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,pfam_SEA_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	ST14	HGNC	ENSG00000149418				98	0	0	28	12	30
OPCML	0	genome.wustl.edu	37	11	132399028	132399028	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	132399028	132399028	G	A	SNP	OPCML	ENST00000541867	human	ensembl	74_37	-1	known	silent	c.453	p.S151	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	OPCML	HGNC	ENSG00000183715				105	0	0	36	14	28
NCAPD3	0	genome.wustl.edu	37	11	134023435	134023435	+	RNA	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	134023435	134023435	C	A	SNP	NCAPD3	ENST00000526787	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	NCAPD3	HGNC	ENSG00000151503				10	0	0	10	4	28.5714
COPB1	0	genome.wustl.edu	37	11	14501184	14501184	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	14501184	14501184	C	T	SNP	COPB1	ENST00000249923	human	ensembl	74_37	-1	known	missense	c.1289	p.R430H	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_COPB1	pfam_Coatomer_bsu_C,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_COPB1	-	no_errors	COPB1	HGNC	ENSG00000129083				93	0	0	57	32	35.9551
CTSD	0	genome.wustl.edu	37	11	1778593	1778593	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	1778593	1778593	T	C	SNP	CTSD	ENST00000236671	human	ensembl	74_37	-1	known	missense	c.665	p.K222R	1.000	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	CTSD	HGNC	ENSG00000117984				82	0	0	20	10	33.3333
SLC6A5	0	genome.wustl.edu	37	11	20676537	20676537	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	20676537	20676537	G	A	SNP	SLC6A5	ENST00000528440	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	SLC6A5	HGNC	ENSG00000165970				35	0	0	23	15	39.4737
LUZP2	0	genome.wustl.edu	37	11	24998139	24998139	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	24998139	24998139	G	A	SNP	LUZP2	ENST00000336930	human	ensembl	74_37	+1	known	silent	c.525	p.A175	0.968	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398				67	0	0	30	20	40
OSBPL5	0	genome.wustl.edu	37	11	3115027	3115027	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	3115027	3115027	C	T	SNP	OSBPL5	ENST00000263650	human	ensembl	74_37	-1	known	silent	c.1758	p.S586	0.494	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762				48	0	0	17	9	34.6154
DCDC1	0	genome.wustl.edu	37	11	31327259	31327259	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	31327259	31327259	G	A	SNP	DCDC1	ENST00000452803	human	ensembl	74_37	-1	known	silent	c.657	p.D219	0.931	pfscan_Doublecortin_dom	pfscan_Doublecortin_dom	-	no_errors	DCDC1	HGNC	ENSG00000170959				179	0	0	72	44	37.931
HIPK3	0	genome.wustl.edu	37	11	33373380	33373380	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	33373380	33373380	G	A	SNP	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	missense	c.3034	p.A1012T	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				37	0	0	23	5	17.8571
CHRNA10	0	genome.wustl.edu	37	11	3688948	3688948	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	3688948	3688948	G	A	SNP	CHRNA10	ENST00000250699	human	ensembl	74_37	-1	known	missense	c.409	p.R137C	0.985	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA10	HGNC	ENSG00000129749				19	0	0	5	2	28.5714
B4GALNT4	0	genome.wustl.edu	37	11	379551	379551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	379551	379551	C	T	SNP	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	missense	c.2338	p.R780W	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				27	0	0	4	5	55.5556
ALX4	0	genome.wustl.edu	37	11	44331484	44331484	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	44331484	44331484	G	A	SNP	ALX4	ENST00000329255	human	ensembl	74_37	-1	known	silent	c.129	p.F43	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX4	HGNC	ENSG00000052850				20	0	0	6	7	53.8462
LRP4	0	genome.wustl.edu	37	11	46907918	46907918	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	46907918	46907918	A	G	SNP	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	silent	c.2382	p.T794	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569				18	0	0	9	4	30.7692
KBTBD4	0	genome.wustl.edu	37	11	47598987	47598987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	47598987	47598987	G	A	SNP	KBTBD4	ENST00000430070	human	ensembl	74_37	-1	known	missense	c.613	p.R205C	0.940	pfam_BACK,smart_BACK	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444				185	0	0	71	27	27.551
TRIM48	0	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	55035844	55035844	T	C	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	missense	c.574	p.Y192H	0.183	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244				132	0	0	89	12	11.8812
OR52D1	0	genome.wustl.edu	37	11	5510100	5510100	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	5510100	5510100	A	G	SNP	OR52D1	ENST00000322641	human	ensembl	74_37	+1	known	missense	c.164	p.D55G	0.018	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52D1	HGNC	ENSG00000181609				177	0	0	64	19	22.8916
OR5L1	0	genome.wustl.edu	37	11	55579083	55579083	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	55579083	55579083	A	G	SNP	OR5L1	ENST00000333973	human	ensembl	74_37	+1	known	silent	c.141	p.A47	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5L1	HGNC	ENSG00000186117				427	1	0.233645	172	108	38.5714
OR8I2	0	genome.wustl.edu	37	11	55861366	55861366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	55861366	55861366	G	A	SNP	OR8I2	ENST00000302124	human	ensembl	74_37	+1	known	missense	c.583	p.E195K	0.462	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8I2	HGNC	ENSG00000172154				141	0	0	109	38	25.8503
DTX4	0	genome.wustl.edu	37	11	58949756	58949756	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	58949756	58949756	C	T	SNP	DTX4	ENST00000227451	human	ensembl	74_37	+1	known	silent	c.756	p.T252	0.000	NULL	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042				58	0	0	18	10	35.7143
PHRF1	0	genome.wustl.edu	37	11	605238	605238	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	605238	605238	G	A	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	silent	c.1272	p.A424	0.962	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				229	0	0	45	14	23.7288
AHNAK	0	genome.wustl.edu	37	11	62291883	62291883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	62291883	62291883	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.10006	p.V3336I	0.154	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				86	0	0	45	27	37.5
TUT1	0	genome.wustl.edu	37	11	62343652	62343652	+	Silent	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	62343652	62343652	G	T	SNP	TUT1	ENST00000308436	human	ensembl	74_37	-1	known	silent	c.1653	p.S551	0.999	pfam_PAP_assoc	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016				46	0	0	20	8	28.5714
PRKCDBP	0	genome.wustl.edu	37	11	6340571	6340571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	6340571	6340571	G	A	SNP	PRKCDBP	ENST00000303927	human	ensembl	74_37	-1	known	missense	c.608	p.P203L	0.000	NULL	NULL	-	no_errors	PRKCDBP	HGNC	ENSG00000170955				112	0	0	51	31	37.8049
NRXN2	0	genome.wustl.edu	37	11	64410147	64410147	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	64410147	64410147	C	A	SNP	NRXN2	ENST00000301894	human	ensembl	74_37	-1	novel	missense	c.129	p.L43F	0.941	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Neurexin-like,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				26	0	0	3	5	62.5
ATG2A	0	genome.wustl.edu	37	11	64681811	64681811	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	64681811	64681811	T	C	SNP	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	silent	c.333	p.P111	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046				33	0	0	5	5	50
PPP2R5B	0	genome.wustl.edu	37	11	64699315	64699315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	64699315	64699315	G	A	SNP	PPP2R5B	ENST00000164133	human	ensembl	74_37	+1	known	missense	c.1091	p.R364H	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5B	HGNC	ENSG00000068971				152	0	0	47	25	34.7222
EFEMP2	0	genome.wustl.edu	37	11	65637701	65637701	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	65637701	65637701	G	A	SNP	EFEMP2	ENST00000307998	human	ensembl	74_37	-1	known	silent	c.498	p.D166	0.787	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	EFEMP2	HGNC	ENSG00000172638				175	0	0	26	19	42.2222
ENSG00000250105	0	genome.wustl.edu	37	11	66326640	66326640	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	66326640	66326640	C	T	SNP	ENSG00000250105	ENST00000504911	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-3074O7.2	Clone_based_vega_gene	ENSG00000250105				57	0	0	10	9	47.3684
DCHS1	0	genome.wustl.edu	37	11	6644405	6644405	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	6644405	6644405	G	A	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	silent	c.8502	p.H2834	0.104	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				17	0	0	7	5	41.6667
KDM2A	0	genome.wustl.edu	37	11	66999252	66999252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	66999252	66999252	C	T	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	missense	c.1300	p.H434Y	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				107	0	0	53	19	26.3889
SSH3	0	genome.wustl.edu	37	11	67076990	67076990	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	67076990	67076990	C	T	SNP	SSH3	ENST00000308127	human	ensembl	74_37	+1	known	missense	c.1184	p.T395M	0.999	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830				66	0	0	38	17	30.9091
DEAF1	0	genome.wustl.edu	37	11	674759	674759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	674759	674759	G	A	SNP	DEAF1	ENST00000382409	human	ensembl	74_37	-1	known	missense	c.1280	p.A427V	0.991	NULL	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030				190	1	0.52356	67	38	36.1905
CPT1A	0	genome.wustl.edu	37	11	68579964	68579964	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	68579964	68579964	G	A	SNP	CPT1A	ENST00000265641	human	ensembl	74_37	-1	known	silent	c.222	p.Y74	0.001	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090				116	0	0	52	34	39.5349
P2RY2	0	genome.wustl.edu	37	11	72945613	72945613	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	72945613	72945613	C	T	SNP	P2RY2	ENST00000311131	human	ensembl	74_37	+1	known	nonsense	c.409	p.R137*	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y2_rcpt,prints_GPCR_Rhodpsn,prints_P2Y4_rcpt	-	no_errors	P2RY2	HGNC	ENSG00000175591				214	0	0	83	9	9.78261
ARHGEF17	0	genome.wustl.edu	37	11	73073593	73073593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	73073593	73073593	C	T	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	missense	c.4810	p.P1604S	0.048	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				55	0	0	21	7	25
C2CD3	0	genome.wustl.edu	37	11	73760408	73760408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	73760408	73760408	G	A	SNP	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	missense	c.5335	p.R1779C	0.964	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				80	0	0	33	13	28.2609
PIDD	0	genome.wustl.edu	37	11	802748	802748	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	802748	802748	C	T	SNP	PIDD	ENST00000347755	human	ensembl	74_37	-1	known	missense	c.853	p.A285T	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Peptidase_S68_pidd,pfam_Death_domain,pfam_Leu-rich_rpt,pfam_ZU5,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	PIDD	HGNC	ENSG00000177595				43	0	0	6	5	45.4545
DLG2	0	genome.wustl.edu	37	11	83673939	83673939	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	83673939	83673939	G	A	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	silent	c.1329	p.D443	0.996	pfam_PDZ_assoc,pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				221	0	0	99	45	31.25
DLG2	0	genome.wustl.edu	37	11	84996295	84996295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	84996295	84996295	G	A	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	missense	c.155	p.P52L	0.012	pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				179	0	0	97	38	28.1481
FZD4	0	genome.wustl.edu	37	11	86662986	86662986	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	86662986	86662986	A	G	SNP	FZD4	ENST00000531380	human	ensembl	74_37	-1	known	missense	c.812	p.V271A	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD4	HGNC	ENSG00000174804				56	0	0	25	16	39.0244
TRIM49	0	genome.wustl.edu	37	11	89531764	89531764	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	89531764	89531764	T	C	SNP	TRIM49	ENST00000329758	human	ensembl	74_37	-1	known	missense	c.893	p.N298S	0.001	superfamily_ConA-like_lec_gl_sf,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM49	HGNC	ENSG00000168930				35	0	0	32	10	23.8095
FAT3	0	genome.wustl.edu	37	11	92257897	92257897	+	Silent	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	92257897	92257897	C	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	silent	c.3390	p.S1130	0.914	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				72	0	0	24	25	51.0204
TAF1D	0	genome.wustl.edu	37	11	93463528	93463528	+	RNA	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	93463528	93463528	C	A	SNP	TAF1D	ENST00000546088	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TAF1D	HGNC	ENSG00000166012				19	0	0	15	4	21.0526
PANX1	0	genome.wustl.edu	37	11	93912967	93912967	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	93912967	93912967	A	G	SNP	PANX1	ENST00000227638	human	ensembl	74_37	+1	known	missense	c.745	p.K249E	1.000	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX1	HGNC	ENSG00000110218				208	0	0	84	58	40.8451
CLEC2B	0	genome.wustl.edu	37	12	10010106	10010106	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	10010106	10010106	G	A	SNP	CLEC2B	ENST00000228438	human	ensembl	74_37	-1	known	silent	c.204	p.A68	0.000	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC2B	HGNC	ENSG00000110852				61	0	0	39	5	11.3636
GOLGA2P5	0	genome.wustl.edu	37	12	100551024	100551024	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	100551024	100551024	G	A	SNP	GOLGA2P5	ENST00000397112	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.974	-	-	-	no_errors	GOLGA2B	Clone_based_vega_gene	ENSG00000238105				134	0	0	50	30	37.5
GNPTAB	0	genome.wustl.edu	37	12	102161840	102161840	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	102161840	102161840	G	A	SNP	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	silent	c.1383	p.C461	1.000	pfam_Notch_dom,superfamily_Notch_dom,smart_Notch_dom,pfscan_Notch_dom	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				96	0	0	67	24	26.3736
SLC41A2	0	genome.wustl.edu	37	12	105198855	105198855	+	RNA	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	105198855	105198855	A	G	SNP	SLC41A2	ENST00000549713	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC41A2	HGNC	ENSG00000136052				225	0	0	104	53	33.758
ACACB	0	genome.wustl.edu	37	12	109637206	109637206	+	Splice_Site	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	109637206	109637206	G	A	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	splice_site	c.2628-1	e17-1	1.000	-	-	-	no_errors	ACACB	HGNC	ENSG00000076555				136	0	0	65	14	17.7215
TRPV4	0	genome.wustl.edu	37	12	110246248	110246248	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	110246248	110246248	G	T	SNP	TRPV4	ENST00000261740	human	ensembl	74_37	-1	known	missense	c.412	p.P138T	0.856	prints_TRPV4_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,prints_TRPV4_channel,tigrfam_TRP_channel	-	no_errors	TRPV4	HGNC	ENSG00000111199				108	0	0	18	19	51.3514
ARPC3	0	genome.wustl.edu	37	12	110873942	110873942	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	110873942	110873942	G	A	SNP	ARPC3	ENST00000228825	human	ensembl	74_37	-1	known	silent	c.447	p.F149	1.000	pfam_ARP2/3_p21-Arc,superfamily_ARP2/3_p21-Arc,pirsf_ARP2/3_p21-Arc	pfam_ARP2/3_p21-Arc,superfamily_ARP2/3_p21-Arc,pirsf_ARP2/3_p21-Arc	-	no_errors	ARPC3	HGNC	ENSG00000111229				293	0	0	110	63	36.4162
TAS2R20	0	genome.wustl.edu	37	12	11149732	11149732	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	11149732	11149732	G	A	SNP	TAS2R20	ENST00000538986	human	ensembl	74_37	-1	known	missense	c.743	p.S248L	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R20	HGNC	ENSG00000255837				166	0	0	118	29	19.7279
CUX2	0	genome.wustl.edu	37	12	111758076	111758076	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	111758076	111758076	G	A	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	missense	c.2263	p.A755T	0.389	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				52	0	0	11	4	26.6667
ATXN2	0	genome.wustl.edu	37	12	111893938	111893938	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	111893938	111893938	C	T	SNP	ATXN2	ENST00000377617	human	ensembl	74_37	-1	known	silent	c.3639	p.S1213	0.805	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842				385	0	0	161	17	9.55056
WSB2	0	genome.wustl.edu	37	12	118480755	118480755	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	118480755	118480755	G	A	SNP	WSB2	ENST00000315436	human	ensembl	74_37	-1	known	silent	c.450	p.S150	0.005	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WSB2	HGNC	ENSG00000176871				181	0	0	68	27	28.4211
ACADS	0	genome.wustl.edu	37	12	121163699	121163699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	121163699	121163699	C	T	SNP	ACADS	ENST00000242592	human	ensembl	74_37	+1	known	missense	c.11	p.A4V	0.008	NULL	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADS	HGNC	ENSG00000122971				21	0	0	2	2	50
ORAI1	0	genome.wustl.edu	37	12	122079195	122079195	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	122079195	122079195	G	A	SNP	ORAI1	ENST00000330079	human	ensembl	74_37	+1	known	silent	c.558	p.T186	0.729	pfam_CRAC_channel	pfam_CRAC_channel	-	no_errors	ORAI1	HGNC	ENSG00000182500				104	0	0	29	12	29.2683
LRRC43	0	genome.wustl.edu	37	12	122667814	122667814	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	122667814	122667814	C	T	SNP	LRRC43	ENST00000339777	human	ensembl	74_37	+1	known	silent	c.123	p.R41	0.820	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113				36	0	0	5	4	44.4444
DNAH10	0	genome.wustl.edu	37	12	124359795	124359795	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	124359795	124359795	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	silent	c.7602	p.T2534	0.003	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				20	0	0	16	4	20
DUSP16	0	genome.wustl.edu	37	12	12630269	12630269	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	12630269	12630269	A	G	SNP	DUSP16	ENST00000228862	human	ensembl	74_37	-1	known	missense	c.1496	p.L499P	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266				132	0	0	62	37	37.3737
EP400	0	genome.wustl.edu	37	12	132547129	132547129	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	132547129	132547129	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8325	p.Q2775	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				152	0	0	44	6	12
DDX51	0	genome.wustl.edu	37	12	132625024	132625024	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	132625024	132625024	G	A	SNP	DDX51	ENST00000397333	human	ensembl	74_37	-1	known	silent	c.1617	p.Y539	0.004	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX51	HGNC	ENSG00000185163				177	0	0	46	19	29.2308
GOLGA3	0	genome.wustl.edu	37	12	133360753	133360753	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	133360753	133360753	G	A	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	silent	c.3264	p.D1088	0.999	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				78	0	0	20	15	42.8571
ABCC9	0	genome.wustl.edu	37	12	21958204	21958204	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	21958204	21958204	G	A	SNP	ABCC9	ENST00000261201	human	ensembl	74_37	-1	known	silent	c.4554	p.V1518	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC9	HGNC	ENSG00000069431				84	0	0	36	18	33.3333
KRAS	0	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	25398281	25398281	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.38	p.G13D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				25	0	0	19	9	32.1429
ASUN	0	genome.wustl.edu	37	12	27077371	27077371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	27077371	27077371	G	A	SNP	ASUN	ENST00000261191	human	ensembl	74_37	-1	known	missense	c.721	p.R241W	1.000	pfam_Cell_cycle_regulator_Mat89Bb	pfam_Cell_cycle_regulator_Mat89Bb	-	no_errors	ASUN	HGNC	ENSG00000064102				160	0	0	63	28	30.7692
FGFR1OP2	0	genome.wustl.edu	37	12	27113541	27113541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	27113541	27113541	C	T	SNP	FGFR1OP2	ENST00000229395	human	ensembl	74_37	+1	known	missense	c.490	p.H164Y	1.000	superfamily_DNA-bd_dom_put	pfam_SIKE,superfamily_DNA-bd_dom_put	-	no_errors	FGFR1OP2	HGNC	ENSG00000111790				111	0	0	49	11	18.3333
CACNA1C	0	genome.wustl.edu	37	12	2714868	2714868	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	2714868	2714868	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	silent	c.3072	p.V1024	0.015	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				84	0	0	31	21	40.3846
DENND5B	0	genome.wustl.edu	37	12	31632813	31632813	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	31632813	31632813	T	C	SNP	DENND5B	ENST00000306833	human	ensembl	74_37	-1	known	missense	c.719	p.K240R	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_PLAT/LH2_dom,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456				87	0	0	36	31	46.2687
BICD1	0	genome.wustl.edu	37	12	32481022	32481022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	32481022	32481022	C	T	SNP	BICD1	ENST00000281474	human	ensembl	74_37	+1	known	missense	c.1633	p.R545C	1.000	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC_like_C_dom	-	no_errors	BICD1	HGNC	ENSG00000151746				155	0	0	56	25	30.8642
PRMT8	0	genome.wustl.edu	37	12	3678670	3678670	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	3678670	3678670	C	T	SNP	PRMT8	ENST00000382622	human	ensembl	74_37	+1	known	missense	c.652	p.R218W	1.000	pfam_Arg_MeTrfase	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT8	HGNC	ENSG00000111218				169	0	0	51	26	33.7662
AMIGO2	0	genome.wustl.edu	37	12	47471413	47471413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	47471413	47471413	C	T	SNP	AMIGO2	ENST00000266581	human	ensembl	74_37	-1	known	missense	c.1373	p.R458Q	0.965	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	AMIGO2	HGNC	ENSG00000139211				122	0	0	57	24	29.6296
COL2A1	0	genome.wustl.edu	37	12	48378832	48378832	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	48378832	48378832	C	A	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	missense	c.1779	p.Q593H	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219				54	0	0	22	9	29.0323
KMT2D	0	genome.wustl.edu	37	12	49418643	49418643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	49418643	49418643	C	T	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.15871	p.E5291K	1.000	pfam_FYrich_C,smart_FYrich_C	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				33	0	0	6	5	45.4545
LMBR1L	0	genome.wustl.edu	37	12	49491882	49491882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	49491882	49491882	G	A	SNP	LMBR1L	ENST00000267102	human	ensembl	74_37	-1	known	missense	c.1247	p.T416I	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_errors	LMBR1L	HGNC	ENSG00000139636				357	0	0	85	42	33.0709
DIP2B	0	genome.wustl.edu	37	12	51138528	51138528	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	51138528	51138528	C	T	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	missense	c.4637	p.P1546L	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084				95	0	0	54	28	34.1463
KCNA5	0	genome.wustl.edu	37	12	5154173	5154173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	5154173	5154173	C	T	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	missense	c.860	p.A287V	0.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				148	0	0	55	27	32.9268
KRT75	0	genome.wustl.edu	37	12	52822136	52822136	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	52822136	52822136	C	G	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1286	p.R429P	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				151	1	0.657895	28	36	56.25
HOXC12	0	genome.wustl.edu	37	12	54349039	54349039	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	54349039	54349039	G	A	SNP	HOXC12	ENST00000243103	human	ensembl	74_37	+1	known	missense	c.326	p.R109H	0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC12	HGNC	ENSG00000123407				22	0	0	4	4	50
ESYT1	0	genome.wustl.edu	37	12	56536156	56536156	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	56536156	56536156	T	C	SNP	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	missense	c.2710	p.W904R	0.987	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641				109	0	0	39	31	44.2857
MIP	0	genome.wustl.edu	37	12	56847528	56847528	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	56847528	56847528	C	T	SNP	MIP	ENST00000257979	human	ensembl	74_37	-1	known	silent	c.372	p.A124	1.000	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	-	no_errors	MIP	HGNC	ENSG00000135517				40	0	0	8	12	60
GPR182	0	genome.wustl.edu	37	12	57389247	57389247	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	57389247	57389247	C	T	SNP	GPR182	ENST00000300098	human	ensembl	74_37	+1	known	missense	c.254	p.A85V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_G10D_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_G10D_rcpt,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	GPR182	HGNC	ENSG00000166856				218	0	0	107	13	10.8333
ARHGAP9	0	genome.wustl.edu	37	12	57869329	57869329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	57869329	57869329	C	T	SNP	ARHGAP9	ENST00000356411	human	ensembl	74_37	-1	known	missense	c.1438	p.E480K	0.972	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329				39	0	0	8	7	46.6667
PLEKHG6	0	genome.wustl.edu	37	12	6421413	6421413	+	Silent	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	6421413	6421413	A	C	SNP	PLEKHG6	ENST00000011684	human	ensembl	74_37	+1	known	silent	c.21	p.P7	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG6	HGNC	ENSG00000008323				126	0	0	55	24	30.3797
IFFO1	0	genome.wustl.edu	37	12	6660145	6660145	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	6660145	6660145	G	A	SNP	IFFO1	ENST00000356896	human	ensembl	74_37	-1	known	missense	c.796	p.R266W	0.987	NULL	NULL	-	no_errors	IFFO1	HGNC	ENSG00000010295				218	1	0.456621	54	39	41.9355
CD4	0	genome.wustl.edu	37	12	6923379	6923379	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	6923379	6923379	A	G	SNP	CD4	ENST00000011653	human	ensembl	74_37	+1	known	missense	c.286	p.I96V	0.989	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610				171	0	0	69	35	33.6538
PTPRB	0	genome.wustl.edu	37	12	70948992	70948992	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	70948992	70948992	G	A	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	silent	c.5091	p.S1697	0.985	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				98	0	0	32	28	46.6667
C1R	0	genome.wustl.edu	37	12	7244123	7244123	+	Silent	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	7244123	7244123	C	A	SNP	C1R	ENST00000543362	human	ensembl	74_37	-1	known	silent	c.156	p.T52	0.002	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	-	no_errors	C1R	HGNC	ENSG00000159403				30	0	0	8	3	27.2727
CCER1	0	genome.wustl.edu	37	12	91348087	91348087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	91348087	91348087	G	A	SNP	CCER1	ENST00000358859	human	ensembl	74_37	-1	known	missense	c.433	p.R145C	0.965	NULL	NULL	-	no_errors	CCER1	HGNC	ENSG00000197651				46	0	0	35	10	22.2222
WNK1	0	genome.wustl.edu	37	12	992975	992975	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	992975	992975	G	A	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	silent	c.5193	p.A1731	0.060	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				83	0	0	49	18	26.8657
KLRF1	0	genome.wustl.edu	37	12	9994990	9994990	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	9994990	9994990	T	C	SNP	KLRF1	ENST00000279544	human	ensembl	74_37	+1	known	missense	c.548	p.M183T	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRF1	HGNC	ENSG00000150045				145	0	0	54	31	36.4706
PCCA	0	genome.wustl.edu	37	13	100953844	100953844	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	100953844	100953844	G	A	SNP	PCCA	ENST00000376285	human	ensembl	74_37	+1	known	missense	c.1196	p.R399Q	1.000	pfam_Biotin_COase_C,superfamily_Rudment_hybrid_motif,smart_Biotin_COase_C,pfscan_Biotin_carboxylation_dom	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198				174	0	0	67	40	37.3832
MYO16	0	genome.wustl.edu	37	13	109661393	109661393	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	109661393	109661393	T	C	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.2525	p.F842S	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				85	0	0	51	21	29.1667
F10	0	genome.wustl.edu	37	13	113795330	113795330	+	Silent	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	113795330	113795330	C	A	SNP	F10	ENST00000375559	human	ensembl	74_37	+1	known	silent	c.468	p.T156	0.021	pirsf_Pept_S1A_FX,smart_EG-like_dom	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F10	HGNC	ENSG00000126218				126	0	0	43	19	30.6452
TMCO3	0	genome.wustl.edu	37	13	114202753	114202753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	114202753	114202753	G	A	SNP	TMCO3	ENST00000434316	human	ensembl	74_37	+1	known	missense	c.1906	p.V636I	0.999	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403				139	0	0	37	24	39.3443
CDC16	0	genome.wustl.edu	37	13	115028389	115028389	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	115028389	115028389	C	T	SNP	CDC16	ENST00000356221	human	ensembl	74_37	+1	known	missense	c.1412	p.A471V	1.000	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC16	HGNC	ENSG00000130177				179	0	0	68	35	33.9806
XPO4	0	genome.wustl.edu	37	13	21358038	21358038	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	21358038	21358038	G	A	SNP	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	silent	c.3279	p.V1093	0.721	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953				121	0	0	63	32	33.6842
PAN3	0	genome.wustl.edu	37	13	28855473	28855473	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	28855473	28855473	T	A	SNP	PAN3	ENST00000380958	human	ensembl	74_37	+1	known	missense	c.2341	p.F781I	1.000	NULL	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_dom	-	no_errors	PAN3	HGNC	ENSG00000152520				83	0	0	27	14	34.1463
NBEA	0	genome.wustl.edu	37	13	36202305	36202305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	36202305	36202305	C	T	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	missense	c.7537	p.R2513C	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				43	0	0	10	6	37.5
FREM2	0	genome.wustl.edu	37	13	39448644	39448644	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	39448644	39448644	C	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	silent	c.8202	p.R2734	0.999	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				156	0	0	45	25	35.7143
AKAP11	0	genome.wustl.edu	37	13	42874908	42874908	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	42874908	42874908	T	G	SNP	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	missense	c.2026	p.C676G	0.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				108	0	0	88	13	12.8713
MLNR	0	genome.wustl.edu	37	13	49795274	49795274	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	49795274	49795274	C	T	SNP	MLNR	ENST00000218721	human	ensembl	74_37	+1	known	silent	c.801	p.Y267	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_GHS-R	-	no_errors	MLNR	HGNC	ENSG00000102539				140	0	0	26	22	45.8333
PCDH17	0	genome.wustl.edu	37	13	58208087	58208087	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	58208087	58208087	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	silent	c.1407	p.P469	0.036	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				71	0	0	23	13	36.1111
PCDH9	0	genome.wustl.edu	37	13	67802376	67802376	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	67802376	67802376	A	C	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	missense	c.197	p.L66R	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				131	0	0	60	26	30.2326
COMMD6	0	genome.wustl.edu	37	13	76111694	76111694	+	RNA	SNP	G	G	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	76111694	76111694	G	C	SNP	COMMD6	ENST00000471682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COMMD6	HGNC	ENSG00000188243				27	0	0	5	12	70.5882
MYCBP2	0	genome.wustl.edu	37	13	77672167	77672167	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	77672167	77672167	T	C	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.9122	p.H3041R	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				84	0	0	55	40	42.1053
MYCBP2	0	genome.wustl.edu	37	13	77755995	77755995	+	Silent	SNP	A	A	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	77755995	77755995	A	T	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	silent	c.4782	p.A1594	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				120	0	0	55	27	32.9268
GPC5	0	genome.wustl.edu	37	13	92560303	92560303	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	92560303	92560303	G	C	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	missense	c.1393	p.V465L	0.964	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				76	0	0	44	20	31.25
IPO5	0	genome.wustl.edu	37	13	98652834	98652834	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	98652834	98652834	G	T	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.1097	p.C366F	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				144	0	0	30	34	53.125
PPP2R5C	0	genome.wustl.edu	37	14	102368059	102368059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	102368059	102368059	G	A	SNP	PPP2R5C	ENST00000422945	human	ensembl	74_37	+1	known	missense	c.949	p.V317M	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5C	HGNC	ENSG00000078304				141	0	0	43	29	40.2778
XRCC3	0	genome.wustl.edu	37	14	104166937	104166937	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	104166937	104166937	C	T	SNP	XRCC3	ENST00000555451	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	XRCC3	HGNC	ENSG00000126215				41	0	0	19	7	26.9231
AHNAK2	0	genome.wustl.edu	37	14	105410411	105410411	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	105410411	105410411	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.11377	p.D3793N	0.001	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				685	0	0	198	114	36.5385
CDCA4	0	genome.wustl.edu	37	14	105478029	105478029	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	105478029	105478029	G	A	SNP	CDCA4	ENST00000336219	human	ensembl	74_37	-1	known	missense	c.238	p.R80C	0.999	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	CDCA4	HGNC	ENSG00000170779				86	0	0	21	18	46.1538
PACS2	0	genome.wustl.edu	37	14	105849643	105849643	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	105849643	105849643	G	A	SNP	PACS2	ENST00000551743	human	ensembl	74_37	+1	putative	missense	c.103	p.G35S	0.000	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364				164	0	0	29	25	46.2963
OR4K15	0	genome.wustl.edu	37	14	20444431	20444431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	20444431	20444431	C	T	SNP	OR4K15	ENST00000305051	human	ensembl	74_37	+1	known	missense	c.754	p.R252C	0.005	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K15	HGNC	ENSG00000169488				166	1	0.598802	99	44	30.7692
PARP2	0	genome.wustl.edu	37	14	20822321	20822321	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	20822321	20822321	G	T	SNP	PARP2	ENST00000250416	human	ensembl	74_37	+1	known	missense	c.717	p.Q239H	0.998	pfam_Poly(ADP-ribose)pol_reg_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP2	HGNC	ENSG00000129484				162	0	0	75	37	33.0357
TEP1	0	genome.wustl.edu	37	14	20851686	20851686	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	20851686	20851686	C	T	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	silent	c.3828	p.G1276	0.986	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				105	0	0	32	11	25.5814
PSMB5	0	genome.wustl.edu	37	14	23495375	23495375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	23495375	23495375	G	A	SNP	PSMB5	ENST00000361611	human	ensembl	74_37	-1	known	missense	c.715	p.R239W	1.000	NULL	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB5	HGNC	ENSG00000100804				287	0	0	72	39	35.1351
MYH6	0	genome.wustl.edu	37	14	23855198	23855198	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	23855198	23855198	C	T	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.5102	p.R1701Q	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				130	0	0	32	27	45.7627
JPH4	0	genome.wustl.edu	37	14	24045100	24045100	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	24045100	24045100	G	A	SNP	JPH4	ENST00000356300	human	ensembl	74_37	-1	known	silent	c.945	p.H315	1.000	pfam_MORN,smart_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH4	HGNC	ENSG00000092051				38	0	0	10	3	23.0769
NYNRIN	0	genome.wustl.edu	37	14	24882594	24882594	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	24882594	24882594	C	T	SNP	NYNRIN	ENST00000382554	human	ensembl	74_37	+1	known	silent	c.2817	p.T939	0.997	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978				47	0	0	13	13	50
ENSG00000258558	0	genome.wustl.edu	37	14	31204183	31204183	+	RNA	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	31204183	31204183	A	G	SNP	ENSG00000258558	ENST00000554665	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-159L20.2	Clone_based_vega_gene	ENSG00000258558				10	0	0	6	2	25
HECTD1	0	genome.wustl.edu	37	14	31574621	31574621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	31574621	31574621	G	A	SNP	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	missense	c.7367	p.T2456M	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				237	0	0	137	47	25.5435
HECTD1	0	genome.wustl.edu	37	14	31613392	31613392	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	31613392	31613392	C	A	SNP	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	missense	c.2703	p.K901N	1.000	superfamily_ARM-type_fold	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				41	0	0	36	18	33.3333
INSM2	0	genome.wustl.edu	37	14	36003662	36003662	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	36003662	36003662	G	A	SNP	INSM2	ENST00000307169	human	ensembl	74_37	+1	known	silent	c.204	p.A68	0.005	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	INSM2	HGNC	ENSG00000168348				26	0	0	8	7	46.6667
INSM2	0	genome.wustl.edu	37	14	36003715	36003715	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	36003715	36003715	C	T	SNP	INSM2	ENST00000307169	human	ensembl	74_37	+1	known	missense	c.257	p.T86M	0.003	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	INSM2	HGNC	ENSG00000168348				16	0	0	2	3	60
BRMS1L	0	genome.wustl.edu	37	14	36334967	36334967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	36334967	36334967	C	T	SNP	BRMS1L	ENST00000216807	human	ensembl	74_37	+1	known	missense	c.727	p.P243S	1.000	NULL	pfam_Sds3	-	no_errors	BRMS1L	HGNC	ENSG00000100916				90	0	0	35	30	46.1538
PAX9	0	genome.wustl.edu	37	14	37145597	37145597	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	37145597	37145597	G	A	SNP	PAX9	ENST00000361487	human	ensembl	74_37	+1	known	silent	c.966	p.A322	0.045	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX9	HGNC	ENSG00000198807				184	0	0	102	17	14.2857
KTN1	0	genome.wustl.edu	37	14	56101252	56101252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	56101252	56101252	C	T	SNP	KTN1	ENST00000395309	human	ensembl	74_37	+1	known	missense	c.1337	p.A446V	0.999	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777				65	0	0	30	17	36.1702
GPR135	0	genome.wustl.edu	37	14	59931390	59931390	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	59931390	59931390	G	A	SNP	GPR135	ENST00000395116	human	ensembl	74_37	-1	known	silent	c.555	p.A185	0.969	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR135	HGNC	ENSG00000181619				25	0	0	9	7	43.75
SYNE2	0	genome.wustl.edu	37	14	64653226	64653226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	64653226	64653226	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.17641	p.V5881M	0.036	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				297	1	0.33557	110	65	37.1429
SPTB	0	genome.wustl.edu	37	14	65239523	65239523	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	65239523	65239523	G	A	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	silent	c.5328	p.N1776	0.993	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182				105	0	0	34	28	45.1613
MAX	0	genome.wustl.edu	37	14	65543322	65543322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	65543322	65543322	C	T	SNP	MAX	ENST00000358664	human	ensembl	74_37	-1	known	missense	c.355	p.D119N	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MAX	HGNC	ENSG00000125952				376	0	0	116	59	33.7143
PLEKHH1	0	genome.wustl.edu	37	14	68045999	68045999	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	68045999	68045999	C	A	SNP	PLEKHH1	ENST00000329153	human	ensembl	74_37	+1	known	missense	c.2998	p.P1000T	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690				25	0	0	8	4	33.3333
GALNT16	0	genome.wustl.edu	37	14	69818886	69818886	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	69818886	69818886	C	T	SNP	GALNT16	ENST00000556829	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.783	-	-	-	no_errors	GALNT16	HGNC	ENSG00000100626				52	0	0	14	6	30
PCNX	0	genome.wustl.edu	37	14	71555941	71555941	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	71555941	71555941	C	T	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.5471	p.A1824V	1.000	pfam_Pecanex	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				79	0	0	50	34	40.4762
SIPA1L1	0	genome.wustl.edu	37	14	72117105	72117105	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	72117105	72117105	T	C	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	silent	c.1872	p.T624	0.001	pfscan_Rap_GAP_dom	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				333	0	0	160	24	13.0435
RGS6	0	genome.wustl.edu	37	14	72976908	72976908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	72976908	72976908	G	A	SNP	RGS6	ENST00000553525	human	ensembl	74_37	+1	known	missense	c.1012	p.D338N	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS6	HGNC	ENSG00000182732				361	0	0	106	66	38.3721
PAPLN	0	genome.wustl.edu	37	14	73717689	73717689	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	73717689	73717689	G	A	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	silent	c.540	p.T180	0.004	prints_Peptidase_M12B_ADAM-TS	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				167	0	0	39	21	35
VRTN	0	genome.wustl.edu	37	14	74824474	74824474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	74824474	74824474	G	A	SNP	VRTN	ENST00000256362	human	ensembl	74_37	+1	known	missense	c.988	p.V330M	0.407	NULL	pfam_Transposase_8	-	no_errors	VRTN	HGNC	ENSG00000133980				178	0	0	48	23	32.3944
RPS6KL1	0	genome.wustl.edu	37	14	75376460	75376460	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	75376460	75376460	G	A	SNP	RPS6KL1	ENST00000358328	human	ensembl	74_37	-1	known	silent	c.1056	p.A352	0.008	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_MIT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KL1	HGNC	ENSG00000198208				60	0	0	24	9	27.2727
RPS6KL1	0	genome.wustl.edu	37	14	75376598	75376598	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	75376598	75376598	G	A	SNP	RPS6KL1	ENST00000358328	human	ensembl	74_37	-1	known	silent	c.918	p.P306	0.003	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_MIT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KL1	HGNC	ENSG00000198208				54	0	0	20	13	39.3939
SNW1	0	genome.wustl.edu	37	14	78187146	78187146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	78187146	78187146	G	A	SNP	SNW1	ENST00000261531	human	ensembl	74_37	-1	known	missense	c.1156	p.R386W	1.000	NULL	pfam_SKI-int_prot_SKIP_SNW-dom,superfamily_Signal_recog_particl_SRP54_hlx	-	no_errors	SNW1	HGNC	ENSG00000100603				137	0	0	80	34	29.8246
NRXN3	0	genome.wustl.edu	37	14	79432736	79432736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	79432736	79432736	G	A	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	missense	c.2731	p.E911K	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				227	0	0	104	51	32.9032
EML5	0	genome.wustl.edu	37	14	89181530	89181530	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	89181530	89181530	C	T	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	silent	c.1197	p.T399	0.520	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				14	0	0	13	4	23.5294
UNC79	0	genome.wustl.edu	37	14	94046501	94046501	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	94046501	94046501	T	C	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	silent	c.2440	p.L814	1.000	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				131	0	0	56	26	31.7073
SERPINA6	0	genome.wustl.edu	37	14	94776185	94776185	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	94776185	94776185	C	T	SNP	SERPINA6	ENST00000341584	human	ensembl	74_37	-1	known	missense	c.772	p.V258M	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA6	HGNC	ENSG00000170099				127	0	0	47	22	31.8841
PAPOLA	0	genome.wustl.edu	37	14	97002284	97002284	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	97002284	97002284	G	A	SNP	PAPOLA	ENST00000216277	human	ensembl	74_37	+1	known	silent	c.978	p.T326	0.997	pfam_PolA_pol_cen_dom,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLA	HGNC	ENSG00000090060				82	0	0	40	28	41.1765
DNM1P46	0	genome.wustl.edu	37	15	100341440	100341440	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	100341440	100341440	G	A	SNP	DNM1P46	ENST00000559110	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.876	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				39	0	0	3	8	72.7273
SNRPA1	0	genome.wustl.edu	37	15	101835369	101835369	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	101835369	101835369	C	T	SNP	SNRPA1	ENST00000254193	human	ensembl	74_37	-1	known	silent	c.15	p.T5	0.998	NULL	smart_U2A'_phosphoprotein32A_C	-	no_errors	SNRPA1	HGNC	ENSG00000131876				14	0	0	3	5	62.5
HERC2P3	0	genome.wustl.edu	37	15	20642613	20642613	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	20642613	20642613	C	T	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				92	0	0	54	8	12.9032
CYFIP1	0	genome.wustl.edu	37	15	22956283	22956283	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	22956283	22956283	G	A	SNP	CYFIP1	ENST00000435939	human	ensembl	74_37	+1	known	missense	c.227	p.R76H	0.000	NULL	pfam_Cytoplasmic_FMR1-int,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793				21	0	0	10	4	28.5714
NPAP1	0	genome.wustl.edu	37	15	24921893	24921893	+	Silent	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	24921893	24921893	G	T	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	silent	c.879	p.P293	0.001	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				142	0	0	45	21	31.8182
HERC2	0	genome.wustl.edu	37	15	28437133	28437133	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	28437133	28437133	A	C	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.8425	p.W2809G	1.000	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				205	0	0	101	23	18.5484
FAN1	0	genome.wustl.edu	37	15	31222835	31222835	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	31222835	31222835	C	T	SNP	FAN1	ENST00000362065	human	ensembl	74_37	+1	known	silent	c.2877	p.P959	0.000	pfam_VRR_NUC	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690				124	0	0	53	25	32.0513
ANP32AP1	0	genome.wustl.edu	37	15	35529406	35529406	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	35529406	35529406	C	T	SNP	ANP32AP1	ENST00000560832	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	ANP32AP1	HGNC	ENSG00000259516				26	0	0	19	8	29.6296
C15orf53	0	genome.wustl.edu	37	15	38990601	38990601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	38990601	38990601	G	A	SNP	C15orf53	ENST00000318792	human	ensembl	74_37	+1	known	missense	c.395	p.R132H	0.000	NULL	NULL	-	no_errors	C15orf53	HGNC	ENSG00000175779				81	0	0	30	15	33.3333
BUB1B	0	genome.wustl.edu	37	15	40512803	40512803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	40512803	40512803	G	A	SNP	BUB1B	ENST00000412359	human	ensembl	74_37	+1	known	missense	c.3038	p.R1013Q	1.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970				177	0	0	134	15	10.0671
VPS18	0	genome.wustl.edu	37	15	41191563	41191563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	41191563	41191563	G	A	SNP	VPS18	ENST00000220509	human	ensembl	74_37	+1	known	missense	c.547	p.G183S	0.989	NULL	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142				178	0	0	61	34	35.7895
DUOX2	0	genome.wustl.edu	37	15	45392015	45392015	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	45392015	45392015	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.3260	p.A1087V	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				138	0	0	45	33	42.3077
FBN1	0	genome.wustl.edu	37	15	48936960	48936960	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	48936960	48936960	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	nonsense	c.7	p.R3*	0.992	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				70	0	0	31	16	34.0426
COPS2	0	genome.wustl.edu	37	15	49426000	49426000	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	49426000	49426000	C	T	SNP	COPS2	ENST00000299259	human	ensembl	74_37	-1	known	silent	c.924	p.P308	0.999	smart_PAM	pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	COPS2	HGNC	ENSG00000166200				42	0	0	23	13	36.1111
TRPM7	0	genome.wustl.edu	37	15	50885864	50885864	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	50885864	50885864	A	G	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	silent	c.3558	p.D1186	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				96	0	0	47	18	27.6923
PYGO1	0	genome.wustl.edu	37	15	55841125	55841125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	55841125	55841125	G	A	SNP	PYGO1	ENST00000302000	human	ensembl	74_37	-1	known	missense	c.118	p.R40C	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO1	HGNC	ENSG00000171016				115	0	0	47	20	29.8507
LDHAL6B	0	genome.wustl.edu	37	15	59499250	59499250	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	59499250	59499250	G	A	SNP	LDHAL6B	ENST00000307144	human	ensembl	74_37	+1	known	silent	c.111	p.P37	0.001	NULL	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHAL6B	HGNC	ENSG00000171989				109	1	0.909091	63	5	7.35294
HERC1	0	genome.wustl.edu	37	15	63950763	63950763	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	63950763	63950763	C	T	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	silent	c.9579	p.A3193	0.851	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				58	0	0	27	14	34.1463
CSNK1G1	0	genome.wustl.edu	37	15	64499785	64499785	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	64499785	64499785	G	A	SNP	CSNK1G1	ENST00000303052	human	ensembl	74_37	-1	known	missense	c.688	p.R230W	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Casein_kinase-1_gamma_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1G1	HGNC	ENSG00000169118				71	0	0	22	8	26.6667
PIF1	0	genome.wustl.edu	37	15	65114768	65114768	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	65114768	65114768	C	A	SNP	PIF1	ENST00000333425	human	ensembl	74_37	-1	known	missense	c.600	p.L200F	0.992	NULL	pfam_DNA_helicase_Pif1,pfam_DNA_helicase,superfamily_P-loop_NTPase	-	no_errors	PIF1	HGNC	ENSG00000140451				85	0	0	27	9	25
CLPX	0	genome.wustl.edu	37	15	65444827	65444827	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	65444827	65444827	G	A	SNP	CLPX	ENST00000300107	human	ensembl	74_37	-1	known	silent	c.1752	p.I584	1.000	superfamily_P-loop_NTPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	pfam_ATPase_AAA-2,pfam_Clp_ATPase_C,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	-	no_errors	CLPX	HGNC	ENSG00000166855				114	0	0	44	18	29.0323
PTPLAD1	0	genome.wustl.edu	37	15	65863951	65863951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	65863951	65863951	C	T	SNP	PTPLAD1	ENST00000261875	human	ensembl	74_37	+1	known	missense	c.839	p.T280I	0.946	pfam_Tyr_Pase-like_PTPLA	pfam_Tyr_Pase-like_PTPLA,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	PTPLAD1	HGNC	ENSG00000074696				55	0	0	17	12	41.3793
MAP2K1	0	genome.wustl.edu	37	15	66774194	66774194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	66774194	66774194	G	A	SNP	MAP2K1	ENST00000307102	human	ensembl	74_37	+1	known	missense	c.670	p.V224M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K1	HGNC	ENSG00000169032				80	0	0	30	16	34.7826
IQCH	0	genome.wustl.edu	37	15	67782375	67782375	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	67782375	67782375	A	G	SNP	IQCH	ENST00000335894	human	ensembl	74_37	+1	known	missense	c.2834	p.H945R	0.241	NULL	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCH	HGNC	ENSG00000103599				233	0	0	99	54	35.2941
GLCE	0	genome.wustl.edu	37	15	69548149	69548149	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	69548149	69548149	C	T	SNP	GLCE	ENST00000261858	human	ensembl	74_37	+1	known	missense	c.4	p.R2C	1.000	NULL	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604				94	0	0	57	22	27.8481
CSPG4	0	genome.wustl.edu	37	15	75980690	75980690	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	75980690	75980690	G	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.2716	p.L906I	0.006	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				148	1	0.671141	39	34	46.5753
CSPG4	0	genome.wustl.edu	37	15	75981406	75981406	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	75981406	75981406	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.2000	p.R667H	0.997	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				176	0	0	44	23	34.3284
ISL2	0	genome.wustl.edu	37	15	76630254	76630254	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	76630254	76630254	C	T	SNP	ISL2	ENST00000290759	human	ensembl	74_37	+1	known	missense	c.194	p.T65M	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	ISL2	HGNC	ENSG00000159556				109	0	0	21	10	32.2581
PEAK1	0	genome.wustl.edu	37	15	77407138	77407138	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	77407138	77407138	T	C	SNP	PEAK1	ENST00000312493	human	ensembl	74_37	-1	known	missense	c.4601	p.Q1534R	0.011	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	PEAK1	HGNC	ENSG00000173517				123	0	0	37	21	36.2069
CSPG4P13	0	genome.wustl.edu	37	15	78196402	78196402	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	78196402	78196402	C	T	SNP	CSPG4P13	ENST00000565545	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.172	-	-	-	no_errors	CSPG4P13	HGNC	ENSG00000260139				36	0	0	12	3	20
MTHFS	0	genome.wustl.edu	37	15	80137709	80137709	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	80137709	80137709	T	C	SNP	MTHFS	ENST00000258874	human	ensembl	74_37	-1	known	missense	c.455	p.Y152C	1.000	pfam_FTHF_cligase,pirsf_FTHF_cligase,tigrfam_FTHF_cligase	pfam_FTHF_cligase,pirsf_FTHF_cligase,tigrfam_FTHF_cligase	-	no_errors	MTHFS	HGNC	ENSG00000136371				156	0	0	64	18	21.9512
PDE8A	0	genome.wustl.edu	37	15	85658682	85658682	+	Silent	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	85658682	85658682	A	C	SNP	PDE8A	ENST00000310298	human	ensembl	74_37	+1	known	silent	c.1363	p.R455	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,superfamily_PAS,superfamily_CheY-like_superfamily,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8A	HGNC	ENSG00000073417				34	0	0	16	12	42.8571
SLCO3A1	0	genome.wustl.edu	37	15	92459657	92459657	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	92459657	92459657	C	T	SNP	SLCO3A1	ENST00000318445	human	ensembl	74_37	+1	known	silent	c.615	p.H205	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				27	0	0	13	4	23.5294
RHBDF1	0	genome.wustl.edu	37	16	109078	109078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	109078	109078	C	T	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	missense	c.2042	p.R681Q	1.000	pfam_Peptidase_S54_rhomboid_dom	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384				80	0	0	30	12	28.5714
BAIAP3	0	genome.wustl.edu	37	16	1398109	1398109	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	1398109	1398109	C	T	SNP	BAIAP3	ENST00000324385	human	ensembl	74_37	+1	known	silent	c.3267	p.A1089	0.680	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	BAIAP3	HGNC	ENSG00000007516				93	0	0	26	9	25.7143
KIAA0430	0	genome.wustl.edu	37	16	15718921	15718921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	15718921	15718921	G	A	SNP	KIAA0430	ENST00000396368	human	ensembl	74_37	-1	known	missense	c.2063	p.T688M	0.001	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783				254	0	0	80	40	33.3333
MYH11	0	genome.wustl.edu	37	16	15829334	15829334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	15829334	15829334	G	A	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	missense	c.3416	p.A1139V	0.980	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				234	0	0	66	52	44.0678
TMEM204	0	genome.wustl.edu	37	16	1584316	1584316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	1584316	1584316	G	A	SNP	TMEM204	ENST00000253934	human	ensembl	74_37	+1	known	missense	c.40	p.A14T	1.000	NULL	NULL	-	no_errors	TMEM204	HGNC	ENSG00000131634				146	0	0	44	19	30.1587
ABCC6	0	genome.wustl.edu	37	16	16256993	16256993	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	16256993	16256993	C	T	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	silent	c.3363	p.S1121	0.001	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				145	0	0	47	21	30.8824
HAGH	0	genome.wustl.edu	37	16	1866933	1866933	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	1866933	1866933	G	T	SNP	HAGH	ENST00000455446	human	ensembl	74_37	-1	putative	missense	c.599	p.P200Q	0.005	NULL	pfam_Beta-lactamas-like	-	no_errors	HAGH	HGNC	ENSG00000063854				91	0	0	21	6	22.2222
HS3ST6	0	genome.wustl.edu	37	16	1962139	1962139	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	1962139	1962139	G	A	SNP	HS3ST6	ENST00000293937	human	ensembl	74_37	-1	known	nonsense	c.481	p.R161*	0.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST6	HGNC	ENSG00000162040				36	0	0	10	9	47.3684
GP2	0	genome.wustl.edu	37	16	20335202	20335202	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	20335202	20335202	G	A	SNP	GP2	ENST00000381362	human	ensembl	74_37	-1	known	silent	c.471	p.C157	0.002	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	GP2	HGNC	ENSG00000169347				76	0	0	22	14	38.8889
RRN3P1	0	genome.wustl.edu	37	16	21809167	21809167	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	21809167	21809167	G	A	SNP	RRN3P1	ENST00000546471	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RRN3P1	HGNC	ENSG00000248124				34	0	0	25	11	30.5556
ABCA3	0	genome.wustl.edu	37	16	2333320	2333320	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	2333320	2333320	G	A	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	missense	c.3902	p.P1301L	0.933	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				127	0	0	33	22	40
NUPR1	0	genome.wustl.edu	37	16	28549505	28549505	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	28549505	28549505	A	G	SNP	NUPR1	ENST00000395641	human	ensembl	74_37	-1	novel	silent	c.138	p.T46	0.011	NULL	pfam_Nuclear_phosphoprot_p8_DNA-bd	-	no_errors	NUPR1	HGNC	ENSG00000176046				216	0	0	70	39	35.7798
ATP2A1	0	genome.wustl.edu	37	16	28906225	28906225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	28906225	28906225	C	T	SNP	ATP2A1	ENST00000357084	human	ensembl	74_37	+1	known	missense	c.1370	p.T457M	1.000	superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Ca-transp_IIA	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A1	HGNC	ENSG00000196296				122	0	0	27	12	30.7692
PRRT2	0	genome.wustl.edu	37	16	29825015	29825015	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	29825015	29825015	G	C	SNP	PRRT2	ENST00000567659	human	ensembl	74_37	+1	known	missense	c.640	p.A214P	1.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	PRRT2	HGNC	ENSG00000167371				38	0	0	18	5	21.7391
HIRIP3	0	genome.wustl.edu	37	16	30004974	30004974	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	30004974	30004974	C	T	SNP	HIRIP3	ENST00000564026	human	ensembl	74_37	-1	known	missense	c.457	p.A153T	0.238	NULL	NULL	-	no_errors	HIRIP3	HGNC	ENSG00000149929				68	0	0	25	12	32.4324
PPP4C	0	genome.wustl.edu	37	16	30094211	30094211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	30094211	30094211	G	A	SNP	PPP4C	ENST00000566749	human	ensembl	74_37	+1	known	missense	c.346	p.G116R	0.000	smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP4C	HGNC	ENSG00000149923				53	0	0	22	20	47.619
PKMYT1	0	genome.wustl.edu	37	16	3025408	3025408	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	3025408	3025408	C	A	SNP	PKMYT1	ENST00000262300	human	ensembl	74_37	-1	known	nonsense	c.784	p.G262*	0.840	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr/Thr_kinase_Cdc2_inhib,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr/Thr_kinase_Cdc2_inhib,pfscan_Prot_kinase_dom	-	no_errors	PKMYT1	HGNC	ENSG00000127564				110	0	0	39	3	7.14286
ZNF764	0	genome.wustl.edu	37	16	30567397	30567397	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	30567397	30567397	C	T	SNP	ZNF764	ENST00000252797	human	ensembl	74_37	-1	known	silent	c.345	p.R115	0.218	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF764	HGNC	ENSG00000169951				102	0	0	38	23	37.7049
BMS1P8	0	genome.wustl.edu	37	16	33497959	33497959	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	33497959	33497959	G	A	SNP	BMS1P8	ENST00000565156	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BMS1P8	HGNC	ENSG00000260518				109	0	0	46	19	29.2308
NLRC3	0	genome.wustl.edu	37	16	3594291	3594291	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	3594291	3594291	G	A	SNP	NLRC3	ENST00000448023	human	ensembl	74_37	-1	known	missense	c.2948	p.A983V	0.185	smart_Leu-rich_rpt_RNase_inh_sub-typ	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984				92	0	0	25	10	28.5714
CREBBP	0	genome.wustl.edu	37	16	3781417	3781417	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	3781417	3781417	C	T	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.4948	p.V1650I	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				34	0	0	6	5	45.4545
MGRN1	0	genome.wustl.edu	37	16	4731601	4731601	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	4731601	4731601	G	A	SNP	MGRN1	ENST00000262370	human	ensembl	74_37	+1	known	silent	c.1182	p.A394	0.671	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MGRN1	HGNC	ENSG00000102858				144	1	0.689655	31	24	43.6364
LONP2	0	genome.wustl.edu	37	16	48295348	48295348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	48295348	48295348	G	A	SNP	LONP2	ENST00000285737	human	ensembl	74_37	+1	known	missense	c.737	p.R246H	1.000	tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP2	HGNC	ENSG00000102910				209	0	0	118	29	19.7279
BBS2	0	genome.wustl.edu	37	16	56535332	56535332	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	56535332	56535332	C	T	SNP	BBS2	ENST00000245157	human	ensembl	74_37	-1	known	silent	c.1158	p.T386	0.090	pirsf_Bardet-Biedl_syndrome_2_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	-	no_errors	BBS2	HGNC	ENSG00000125124				285	0	0	136	12	8.10811
GPR114	0	genome.wustl.edu	37	16	57600565	57600565	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	57600565	57600565	T	C	SNP	GPR114	ENST00000340339	human	ensembl	74_37	+1	known	missense	c.601	p.W201R	0.955	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618				187	0	0	81	12	12.9032
TEPP	0	genome.wustl.edu	37	16	58018678	58018678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	58018678	58018678	G	A	SNP	TEPP	ENST00000290871	human	ensembl	74_37	+1	known	missense	c.589	p.A197T	0.013	NULL	NULL	-	no_errors	TEPP	HGNC	ENSG00000159648				29	0	0	9	3	25
USB1	0	genome.wustl.edu	37	16	58036445	58036445	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	58036445	58036445	C	T	SNP	USB1	ENST00000219281	human	ensembl	74_37	+1	known	missense	c.161	p.P54L	0.113	pfam_Usb1	pfam_Usb1	-	no_errors	USB1	HGNC	ENSG00000103005				233	0	0	63	32	33.6842
CDH16	0	genome.wustl.edu	37	16	66943236	66943236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	66943236	66943236	G	A	SNP	CDH16	ENST00000299752	human	ensembl	74_37	-1	known	missense	c.2326	p.R776C	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589				74	0	0	18	8	30.7692
RRAD	0	genome.wustl.edu	37	16	66959057	66959057	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	66959057	66959057	C	A	SNP	RRAD	ENST00000299759	human	ensembl	74_37	-1	known	missense	c.26	p.G9V	1.000	pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RRAD	HGNC	ENSG00000166592				13	0	0	0	3	100
E2F4	0	genome.wustl.edu	37	16	67227347	67227347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	67227347	67227347	C	T	SNP	E2F4	ENST00000568839	human	ensembl	74_37	+1	known	missense	c.268	p.H90Y	0.000	NULL	pfam_E2F_TDP	-	no_errors	E2F4	HGNC	ENSG00000205250				219	0	0	72	43	37.3913
ELMO3	0	genome.wustl.edu	37	16	67237066	67237066	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	67237066	67237066	C	T	SNP	ELMO3	ENST00000393997	human	ensembl	74_37	+1	known	nonsense	c.1879	p.Q627*	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO3	HGNC	ENSG00000102890				50	0	0	17	7	29.1667
FAM65A	0	genome.wustl.edu	37	16	67579579	67579579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	67579579	67579579	G	A	SNP	FAM65A	ENST00000422602	human	ensembl	74_37	+1	known	missense	c.3263	p.R1088Q	0.994	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523				292	0	0	51	40	43.956
TSNAXIP1	0	genome.wustl.edu	37	16	67860159	67860159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	67860159	67860159	C	T	SNP	TSNAXIP1	ENST00000388833	human	ensembl	74_37	+1	known	missense	c.1087	p.R363W	0.963	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904				139	0	0	37	17	31.4815
DDX28	0	genome.wustl.edu	37	16	68057092	68057092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	68057092	68057092	C	T	SNP	DDX28	ENST00000332395	human	ensembl	74_37	-1	known	missense	c.14	p.R5Q	0.004	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX28	HGNC	ENSG00000182810				76	0	0	9	8	47.0588
WFIKKN1	0	genome.wustl.edu	37	16	683442	683442	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	683442	683442	C	T	SNP	WFIKKN1	ENST00000319070	human	ensembl	74_37	+1	known	silent	c.1032	p.Y344	0.896	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN1	HGNC	ENSG00000127578				14	0	0	3	5	62.5
SMPD3	0	genome.wustl.edu	37	16	68405944	68405944	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	68405944	68405944	C	T	SNP	SMPD3	ENST00000219334	human	ensembl	74_37	-1	known	silent	c.141	p.Q47	1.000	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056				48	0	0	14	5	26.3158
AARS	0	genome.wustl.edu	37	16	70295027	70295027	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	70295027	70295027	G	A	SNP	AARS	ENST00000261772	human	ensembl	74_37	-1	known	nonsense	c.1705	p.R569*	1.000	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS	HGNC	ENSG00000090861				127	1	0.78125	43	23	34.8485
HYDIN	0	genome.wustl.edu	37	16	70866938	70866938	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	70866938	70866938	T	C	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.13712	p.H4571R	0.981	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				29	0	0	19	8	29.6296
HYDIN	0	genome.wustl.edu	37	16	70993639	70993639	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	70993639	70993639	C	T	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.6053	p.R2018H	1.000	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				26	0	0	13	9	40.9091
ATP2C2	0	genome.wustl.edu	37	16	84486938	84486938	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	84486938	84486938	C	A	SNP	ATP2C2	ENST00000262429	human	ensembl	74_37	+1	known	missense	c.1941	p.F647L	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C2	HGNC	ENSG00000064270				434	2	0.458716	159	31	16.3158
KLHL36	0	genome.wustl.edu	37	16	84695452	84695452	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	84695452	84695452	C	T	SNP	KLHL36	ENST00000564996	human	ensembl	74_37	+1	known	nonsense	c.1564	p.Q522*	0.991	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686				79	0	0	11	6	35.2941
FBXO31	0	genome.wustl.edu	37	16	87376516	87376516	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	87376516	87376516	C	T	SNP	FBXO31	ENST00000311635	human	ensembl	74_37	-1	known	silent	c.699	p.T233	0.964	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO31	HGNC	ENSG00000103264				24	0	0	12	4	25
ANKRD11	0	genome.wustl.edu	37	16	89347376	89347376	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	89347376	89347376	C	T	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	silent	c.5574	p.P1858	0.901	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				120	0	0	30	19	38.7755
ANKRD11	0	genome.wustl.edu	37	16	89350961	89350961	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	89350961	89350961	G	C	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	missense	c.1989	p.D663E	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				256	0	0	110	45	29.0323
PRPF8	0	genome.wustl.edu	37	17	1587865	1587865	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	1587865	1587865	T	C	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	missense	c.1	p.M1V	1.000	NULL	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231				63	0	0	28	14	33.3333
FLCN	0	genome.wustl.edu	37	17	17127263	17127263	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	17127263	17127263	G	A	SNP	FLCN	ENST00000285071	human	ensembl	74_37	-1	known	silent	c.591	p.I197	0.560	pfam_Folliculin	pfam_Folliculin	-	no_errors	FLCN	HGNC	ENSG00000154803				88	0	0	43	3	6.52174
MYO15A	0	genome.wustl.edu	37	17	18023035	18023035	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	18023035	18023035	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	silent	c.921	p.Y307	0.991	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				175	0	0	54	22	28.9474
HIC1	0	genome.wustl.edu	37	17	1961105	1961105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	1961105	1961105	G	A	SNP	HIC1	ENST00000322941	human	ensembl	74_37	+1	known	missense	c.1178	p.G393D	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC1	HGNC	ENSG00000177374				13	0	0	6	4	40
SMG6	0	genome.wustl.edu	37	17	2186925	2186925	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	2186925	2186925	C	A	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	missense	c.2442	p.K814N	0.999	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				158	0	0	55	35	38.8889
PAFAH1B1	0	genome.wustl.edu	37	17	2541468	2541468	+	RNA	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	2541468	2541468	T	C	SNP	PAFAH1B1	ENST00000572915	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168				10	0	0	5	3	37.5
NOS2	0	genome.wustl.edu	37	17	26107875	26107875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	26107875	26107875	C	T	SNP	NOS2	ENST00000313735	human	ensembl	74_37	-1	known	missense	c.922	p.V308I	0.974	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171				103	0	0	36	13	26.5306
UNC119	0	genome.wustl.edu	37	17	26874689	26874689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	26874689	26874689	G	A	SNP	UNC119	ENST00000301032	human	ensembl	74_37	-1	known	missense	c.616	p.R206W	0.717	superfamily_Ig_E-set	pfam_GMP_PDE_delta,superfamily_Ig_E-set	-	no_errors	UNC119	HGNC	ENSG00000109103				105	0	0	48	17	26.1538
SDF2	0	genome.wustl.edu	37	17	26976285	26976285	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	26976285	26976285	C	A	SNP	SDF2	ENST00000247020	human	ensembl	74_37	-1	known	missense	c.358	p.A120S	1.000	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	SDF2	HGNC	ENSG00000132581				127	0	0	58	6	9.375
SUPT6H	0	genome.wustl.edu	37	17	27010016	27010016	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	27010016	27010016	A	G	SNP	SUPT6H	ENST00000314616	human	ensembl	74_37	+1	known	missense	c.1784	p.Q595R	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111				81	0	0	32	4	11.1111
NEK8	0	genome.wustl.edu	37	17	27068463	27068463	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	27068463	27068463	C	T	SNP	NEK8	ENST00000268766	human	ensembl	74_37	+1	known	nonsense	c.1924	p.R642*	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Prot_kinase_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_RCC1/BLIP-II,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602				80	0	0	29	12	29.2683
PHF12	0	genome.wustl.edu	37	17	27248731	27248731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	27248731	27248731	C	T	SNP	PHF12	ENST00000332830	human	ensembl	74_37	-1	known	missense	c.811	p.V271I	1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118				186	0	0	66	48	42.1053
PIPOX	0	genome.wustl.edu	37	17	27380441	27380441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	27380441	27380441	G	A	SNP	PIPOX	ENST00000323372	human	ensembl	74_37	+1	known	missense	c.488	p.R163Q	0.866	pfam_FAD-dep_OxRdtase,tigrfam_SoxA_mon	pfam_FAD-dep_OxRdtase,tigrfam_SoxA_mon	-	no_errors	PIPOX	HGNC	ENSG00000179761				183	0	0	53	19	26.3889
NSRP1	0	genome.wustl.edu	37	17	28512115	28512115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	28512115	28512115	C	T	SNP	NSRP1	ENST00000247026	human	ensembl	74_37	+1	known	missense	c.1100	p.A367V	0.010	NULL	pfam_DUF2040	-	no_errors	NSRP1	HGNC	ENSG00000126653				46	0	0	30	5	14.2857
NSRP1	0	genome.wustl.edu	37	17	28512116	28512116	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	28512116	28512116	G	A	SNP	NSRP1	ENST00000247026	human	ensembl	74_37	+1	known	silent	c.1101	p.A367	0.001	NULL	pfam_DUF2040	-	no_errors	NSRP1	HGNC	ENSG00000126653				48	0	0	25	10	28.5714
TMEM132E	0	genome.wustl.edu	37	17	32957082	32957082	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	32957082	32957082	T	A	SNP	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	missense	c.1124	p.V375D	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				75	0	0	17	7	29.1667
LYZL6	0	genome.wustl.edu	37	17	34263709	34263709	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	34263709	34263709	G	A	SNP	LYZL6	ENST00000492340	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LYZL6	HGNC	ENSG00000161572				133	0	0	52	12	18.75
MYO19	0	genome.wustl.edu	37	17	34863341	34863341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	34863341	34863341	G	A	SNP	MYO19	ENST00000431794	human	ensembl	74_37	-1	known	missense	c.1364	p.A455V	0.103	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO19	HGNC	ENSG00000141140				148	0	0	33	16	32.6531
GGNBP2	0	genome.wustl.edu	37	17	34912960	34912960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	34912960	34912960	C	T	SNP	GGNBP2	ENST00000304718	human	ensembl	74_37	+1	known	missense	c.212	p.A71V	1.000	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955				190	0	0	66	47	41.5929
GRB7	0	genome.wustl.edu	37	17	37898828	37898828	+	Silent	SNP	A	A	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	37898828	37898828	A	T	SNP	GRB7	ENST00000445327	human	ensembl	74_37	+1	known	silent	c.234	p.R78	0.978	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB7	HGNC	ENSG00000141738				309	0	0	139	9	6.08108
GSDMA	0	genome.wustl.edu	37	17	38126892	38126892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	38126892	38126892	G	A	SNP	GSDMA	ENST00000301659	human	ensembl	74_37	+1	known	missense	c.550	p.G184R	1.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMA	HGNC	ENSG00000167914				9	0	0	3	3	50
KRT39	0	genome.wustl.edu	37	17	39123030	39123030	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	39123030	39123030	T	C	SNP	KRT39	ENST00000355612	human	ensembl	74_37	-1	known	missense	c.79	p.T27A	0.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT39	HGNC	ENSG00000196859				281	1	0.35461	176	47	21.0762
KRTAP4-12	0	genome.wustl.edu	37	17	39280073	39280073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	39280073	39280073	C	T	SNP	KRTAP4-12	ENST00000394014	human	ensembl	74_37	-1	known	missense	c.302	p.C101Y	0.910	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-12	HGNC	ENSG00000213416				195	1	0.510204	46	24	34.2857
KRT33A	0	genome.wustl.edu	37	17	39505608	39505608	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	39505608	39505608	A	G	SNP	KRT33A	ENST00000007735	human	ensembl	74_37	-1	known	missense	c.421	p.F141L	1.000	pfam_IF,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT33A	HGNC	ENSG00000006059				78	0	0	35	14	28.5714
ATP6V0A1	0	genome.wustl.edu	37	17	40666353	40666353	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	40666353	40666353	C	T	SNP	ATP6V0A1	ENST00000264649	human	ensembl	74_37	+1	known	silent	c.2298	p.S766	0.000	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A1	HGNC	ENSG00000033627				382	0	0	117	64	35.3591
CCR10	0	genome.wustl.edu	37	17	40832215	40832215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	40832215	40832215	C	T	SNP	CCR10	ENST00000332438	human	ensembl	74_37	-1	known	missense	c.445	p.G149R	0.043	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR10,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CCR10	HGNC	ENSG00000184451				43	0	0	8	5	38.4615
MPP3	0	genome.wustl.edu	37	17	41891388	41891388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	41891388	41891388	C	T	SNP	MPP3	ENST00000398389	human	ensembl	74_37	-1	known	missense	c.1246	p.A416T	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP3	HGNC	ENSG00000161647				201	0	0	62	48	43.6364
SLC4A1	0	genome.wustl.edu	37	17	42335473	42335473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	42335473	42335473	C	T	SNP	SLC4A1	ENST00000262418	human	ensembl	74_37	-1	known	missense	c.1163	p.R388H	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939				262	0	0	71	23	24.4681
GFAP	0	genome.wustl.edu	37	17	42992767	42992767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	42992767	42992767	G	A	SNP	GFAP	ENST00000253408	human	ensembl	74_37	-1	known	missense	c.88	p.R30C	0.117	NULL	pfam_IF	-	no_errors	GFAP	HGNC	ENSG00000131095				45	0	0	15	8	34.7826
MAP3K14	0	genome.wustl.edu	37	17	43362236	43362236	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	43362236	43362236	G	A	SNP	MAP3K14	ENST00000344686	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.930	-	-	-	no_errors	MAP3K14	HGNC	ENSG00000006062				13	0	0	3	3	50
SP6	0	genome.wustl.edu	37	17	45925675	45925675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	45925675	45925675	C	T	SNP	SP6	ENST00000342234	human	ensembl	74_37	-1	known	missense	c.121	p.G41R	0.922	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP6	HGNC	ENSG00000189120				35	0	0	12	7	36.8421
PLD2	0	genome.wustl.edu	37	17	4720288	4720288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	4720288	4720288	G	A	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	missense	c.1639	p.V547I	0.959	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				187	0	0	48	31	39.2405
MRPL27	0	genome.wustl.edu	37	17	48447367	48447367	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	48447367	48447367	A	G	SNP	MRPL27	ENST00000442592	human	ensembl	74_37	-1	putative	missense	c.266	p.L89P	0.000	pfam_Ribosomal_L27	pfam_Ribosomal_L27,prints_Ribosomal_L27	-	no_errors	MRPL27	HGNC	ENSG00000108826				87	0	0	23	20	46.5116
CHAD	0	genome.wustl.edu	37	17	48546095	48546095	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	48546095	48546095	C	T	SNP	CHAD	ENST00000258969	human	ensembl	74_37	-1	known	missense	c.80	p.C27Y	1.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CHAD	HGNC	ENSG00000136457				38	0	0	11	15	57.6923
SPATA20	0	genome.wustl.edu	37	17	48628510	48628510	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	48628510	48628510	C	A	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	missense	c.1535	p.P512H	1.000	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				62	0	0	10	6	37.5
SPATA20	0	genome.wustl.edu	37	17	48628511	48628511	+	Silent	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	48628511	48628511	C	A	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	silent	c.1536	p.P512	0.001	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				64	0	0	10	7	41.1765
ABCC3	0	genome.wustl.edu	37	17	48757227	48757227	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	48757227	48757227	G	A	SNP	ABCC3	ENST00000285238	human	ensembl	74_37	+1	known	silent	c.3774	p.E1258	1.000	superfamily_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846				107	0	0	37	17	31.4815
INCA1	0	genome.wustl.edu	37	17	4892784	4892784	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	4892784	4892784	G	A	SNP	INCA1	ENST00000396829	human	ensembl	74_37	-1	known	missense	c.334	p.R112W	1.000	NULL	NULL	-	no_errors	INCA1	HGNC	ENSG00000196388				454	0	0	136	79	36.7442
ZNF594	0	genome.wustl.edu	37	17	5085734	5085734	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	5085734	5085734	A	G	SNP	ZNF594	ENST00000399604	human	ensembl	74_37	-1	known	silent	c.1818	p.N606	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626				340	0	0	162	80	33.0579
VMP1	0	genome.wustl.edu	37	17	57917285	57917285	+	RNA	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	57917285	57917285	T	C	SNP	VMP1	ENST00000588617	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	VMP1	HGNC	ENSG00000062716				117	0	0	72	9	11.1111
CYB561	0	genome.wustl.edu	37	17	61514812	61514812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	61514812	61514812	C	T	SNP	CYB561	ENST00000360793	human	ensembl	74_37	-1	known	missense	c.97	p.A33T	0.827	pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYB561	HGNC	ENSG00000008283				108	0	0	28	4	12.5
KCNH6	0	genome.wustl.edu	37	17	61615881	61615881	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	61615881	61615881	C	T	SNP	KCNH6	ENST00000583023	human	ensembl	74_37	+1	known	silent	c.1812	p.R604	0.875	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826				31	0	0	9	4	30.7692
SCN4A	0	genome.wustl.edu	37	17	62018409	62018409	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	62018409	62018409	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.5233	p.R1745C	1.000	pfscan_IQ_motif_EF-hand-BS	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				151	0	0	36	21	36.8421
SCN4A	0	genome.wustl.edu	37	17	62019281	62019281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	62019281	62019281	C	T	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.4361	p.R1454Q	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				82	0	0	19	10	34.4828
ABCA5	0	genome.wustl.edu	37	17	67303002	67303002	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	67303002	67303002	G	A	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	nonsense	c.652	p.R218*	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				119	0	0	63	24	27.5862
SSTR2	0	genome.wustl.edu	37	17	71166221	71166221	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	71166221	71166221	A	G	SNP	SSTR2	ENST00000357585	human	ensembl	74_37	+1	known	missense	c.763	p.T255A	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_2,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_5	-	no_errors	SSTR2	HGNC	ENSG00000180616				211	0	0	78	52	40
ICT1	0	genome.wustl.edu	37	17	73008887	73008887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	73008887	73008887	G	A	SNP	ICT1	ENST00000301585	human	ensembl	74_37	+1	known	missense	c.106	p.G36S	0.329	NULL	pfam_Pep_chain_release_fac_I_II	-	no_errors	ICT1	HGNC	ENSG00000167862				37	0	0	13	11	45.8333
NLGN2	0	genome.wustl.edu	37	17	7320418	7320418	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	7320418	7320418	A	T	SNP	NLGN2	ENST00000302926	human	ensembl	74_37	+1	known	missense	c.1808	p.E603V	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN2	HGNC	ENSG00000169992				74	0	0	18	14	43.75
C17orf74	0	genome.wustl.edu	37	17	7330302	7330302	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	7330302	7330302	A	G	SNP	C17orf74	ENST00000333870	human	ensembl	74_37	+1	known	missense	c.992	p.N331S	0.000	NULL	NULL	-	no_errors	C17orf74	HGNC	ENSG00000184560				60	0	0	17	5	22.7273
ZACN	0	genome.wustl.edu	37	17	74077483	74077483	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	74077483	74077483	G	A	SNP	ZACN	ENST00000334586	human	ensembl	74_37	+1	known	silent	c.669	p.T223	0.982	superfamily_Neur_chan_lig-bd	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM	-	no_errors	ZACN	HGNC	ENSG00000186919				397	0	0	104	65	38.4615
PRPSAP1	0	genome.wustl.edu	37	17	74324855	74324855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	74324855	74324855	G	A	SNP	PRPSAP1	ENST00000446526	human	ensembl	74_37	-1	known	missense	c.724	p.R242C	0.985	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP1	HGNC	ENSG00000161542				43	0	0	21	10	32.2581
TNFSF12-TNFSF13	0	genome.wustl.edu	37	17	7463001	7463001	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	7463001	7463001	C	A	SNP	TNFSF12-TNFSF13	ENST00000293826	human	ensembl	74_37	+1	known	missense	c.559	p.L187I	0.552	NULL	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	-	no_errors	TNFSF12-TNFSF13	HGNC	ENSG00000248871				57	0	0	32	2	5.88235
USP36	0	genome.wustl.edu	37	17	76800028	76800028	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	76800028	76800028	C	T	SNP	USP36	ENST00000312010	human	ensembl	74_37	-1	known	missense	c.2249	p.R750H	0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP36	HGNC	ENSG00000055483				85	0	0	27	5	15.625
KDM6B	0	genome.wustl.edu	37	17	7751580	7751580	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	7751580	7751580	C	T	SNP	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	silent	c.1974	p.P658	0.027	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				173	0	0	39	30	43.4783
RPTOR	0	genome.wustl.edu	37	17	78704481	78704481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	78704481	78704481	C	T	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	missense	c.629	p.A210V	0.996	NULL	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				121	0	0	42	27	39.1304
AATK	0	genome.wustl.edu	37	17	79098801	79098801	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	79098801	79098801	G	A	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	missense	c.769	p.R257W	0.995	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409				21	0	0	2	3	60
PCYT2	0	genome.wustl.edu	37	17	79866756	79866756	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	79866756	79866756	G	A	SNP	PCYT2	ENST00000538721	human	ensembl	74_37	-1	known	silent	c.336	p.H112	0.035	pfam_Cyt_trans-like	pfam_Cyt_trans-like,tigrfam_Cyt_trans-like	-	no_errors	PCYT2	HGNC	ENSG00000185813				139	1	0.714286	37	15	28.8462
RAC3	0	genome.wustl.edu	37	17	79991680	79991680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	79991680	79991680	C	T	SNP	RAC3	ENST00000306897	human	ensembl	74_37	+1	known	missense	c.554	p.P185L	0.934	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAC3	HGNC	ENSG00000169750				25	0	0	12	7	36.8421
GPS1	0	genome.wustl.edu	37	17	80012606	80012606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	80012606	80012606	G	A	SNP	GPS1	ENST00000355130	human	ensembl	74_37	+1	known	missense	c.649	p.A217T	1.000	pfam_26S_proteasome_reg_su-Rpn7	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	GPS1	HGNC	ENSG00000169727				84	0	0	20	9	31.0345
GPS1	0	genome.wustl.edu	37	17	80014794	80014794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	80014794	80014794	C	T	SNP	GPS1	ENST00000355130	human	ensembl	74_37	+1	known	missense	c.1453	p.R485C	0.999	NULL	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	GPS1	HGNC	ENSG00000169727				99	0	0	26	17	39.5349
UTS2R	0	genome.wustl.edu	37	17	80332696	80332696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	80332696	80332696	C	T	SNP	UTS2R	ENST00000313135	human	ensembl	74_37	+1	known	missense	c.496	p.R166C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Urot_II_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Urot_II_rcpt,prints_GPCR_Rhodpsn	-	no_errors	UTS2R	HGNC	ENSG00000181408				16	0	0	7	3	30
ZNF750	0	genome.wustl.edu	37	17	80789902	80789902	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	80789902	80789902	C	T	SNP	ZNF750	ENST00000269394	human	ensembl	74_37	-1	known	silent	c.429	p.P143	0.009	NULL	NULL	-	no_errors	ZNF750	HGNC	ENSG00000141579				106	0	0	21	6	22.2222
MYH10	0	genome.wustl.edu	37	17	8445463	8445463	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	8445463	8445463	G	A	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	silent	c.1537	p.L513	0.141	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				128	0	0	43	37	46.25
RCVRN	0	genome.wustl.edu	37	17	9804374	9804374	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	9804374	9804374	G	A	SNP	RCVRN	ENST00000226193	human	ensembl	74_37	-1	known	missense	c.425	p.P142L	1.000	prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	RCVRN	HGNC	ENSG00000109047				127	0	0	43	31	41.8919
LDLRAD4	0	genome.wustl.edu	37	18	13438332	13438332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	13438332	13438332	G	A	SNP	LDLRAD4	ENST00000359446	human	ensembl	74_37	+1	known	missense	c.130	p.E44K	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD4	HGNC	ENSG00000168675				161	0	0	75	38	33.6283
KCTD1	0	genome.wustl.edu	37	18	24056602	24056602	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	24056602	24056602	A	G	SNP	KCTD1	ENST00000417602	human	ensembl	74_37	-1	known	silent	c.2010	p.G670	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_DUF3504,pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD1	HGNC	ENSG00000134504				82	0	0	38	16	29.6296
GALNT1	0	genome.wustl.edu	37	18	33263466	33263466	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	33263466	33263466	C	A	SNP	GALNT1	ENST00000269195	human	ensembl	74_37	+1	known	missense	c.593	p.A198D	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT1	HGNC	ENSG00000141429				52	0	0	28	3	9.67742
RPRD1A	0	genome.wustl.edu	37	18	33606891	33606891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	33606891	33606891	G	A	SNP	RPRD1A	ENST00000357384	human	ensembl	74_37	-1	known	missense	c.761	p.A254V	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	RPRD1A	HGNC	ENSG00000141425				95	0	0	46	27	36.9863
FHOD3	0	genome.wustl.edu	37	18	34174753	34174753	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	34174753	34174753	C	T	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.610	p.R204C	1.000	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				40	0	0	29	8	21.6216
KIAA1328	0	genome.wustl.edu	37	18	34647292	34647292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	34647292	34647292	G	A	SNP	KIAA1328	ENST00000280020	human	ensembl	74_37	+1	known	missense	c.1016	p.R339Q	0.944	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477				92	0	0	27	14	34.1463
ME2	0	genome.wustl.edu	37	18	48442541	48442541	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	48442541	48442541	A	G	SNP	ME2	ENST00000321341	human	ensembl	74_37	+1	known	silent	c.396	p.G132	1.000	pfam_Malic_N	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME2	HGNC	ENSG00000082212				119	1	0.833333	70	30	30
EPB41L3	0	genome.wustl.edu	37	18	5394709	5394709	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	5394709	5394709	C	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.3237	p.E1079D	1.000	pirsf_Band_41_protein,pfam_Band_4.1_C	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				115	0	0	50	23	31.5068
EPB41L3	0	genome.wustl.edu	37	18	5428401	5428401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	5428401	5428401	G	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.976	p.R326W	1.000	pirsf_Band_41_protein,pfam_FERM_PH-like_C,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				262	0	0	104	65	38.4615
TNFRSF11A	0	genome.wustl.edu	37	18	60021739	60021739	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	60021739	60021739	C	T	SNP	TNFRSF11A	ENST00000586569	human	ensembl	74_37	+1	known	silent	c.399	p.C133	0.948	smart_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11A,prints_TNFR_11	-	no_errors	TNFRSF11A	HGNC	ENSG00000141655				77	0	0	26	16	38.0952
LAMA1	0	genome.wustl.edu	37	18	6958568	6958568	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	6958568	6958568	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.7872	p.Y2624	0.203	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				83	0	0	50	17	25.3731
NETO1	0	genome.wustl.edu	37	18	70526122	70526122	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	70526122	70526122	T	A	SNP	NETO1	ENST00000327305	human	ensembl	74_37	-1	known	missense	c.408	p.K136N	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342				96	0	0	43	35	44.8718
ZADH2	0	genome.wustl.edu	37	18	72913820	72913820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	72913820	72913820	C	T	SNP	ZADH2	ENST00000322342	human	ensembl	74_37	-1	known	missense	c.685	p.V229I	0.003	pfam_ADH_C,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ZADH2	HGNC	ENSG00000180011				171	0	0	93	61	39.6104
ZNF236	0	genome.wustl.edu	37	18	74639294	74639294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	74639294	74639294	C	T	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.4229	p.T1410M	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				143	0	0	55	28	33.7349
SALL3	0	genome.wustl.edu	37	18	76753166	76753166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	76753166	76753166	C	T	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.1175	p.A392V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				32	0	0	10	2	16.6667
SMARCA4	0	genome.wustl.edu	37	19	11132542	11132542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	11132542	11132542	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.2758	p.E920K	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				65	0	0	19	6	24
SMARCA4	0	genome.wustl.edu	37	19	11135079	11135079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	11135079	11135079	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.3046	p.V1016M	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				82	0	0	28	10	26.3158
SBNO2	0	genome.wustl.edu	37	19	1119039	1119039	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	1119039	1119039	C	A	SNP	SBNO2	ENST00000361757	human	ensembl	74_37	-1	known	nonsense	c.1498	p.E500*	0.997	NULL	superfamily_P-loop_NTPase	-	no_errors	SBNO2	HGNC	ENSG00000064932				42	0	0	10	2	16.6667
CNN1	0	genome.wustl.edu	37	19	11660378	11660378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	11660378	11660378	C	T	SNP	CNN1	ENST00000252456	human	ensembl	74_37	+1	known	missense	c.662	p.A221V	0.992	pfam_Calponin_repeat,pfscan_Calponin_repeat	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN1	HGNC	ENSG00000130176				36	0	0	20	4	16.6667
ZNF441	0	genome.wustl.edu	37	19	11891075	11891075	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	11891075	11891075	T	C	SNP	ZNF441	ENST00000357901	human	ensembl	74_37	+1	known	missense	c.436	p.C146R	0.962	smart_Znf_C2H2-like	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044				113	0	0	67	16	19.2771
HOOK2	0	genome.wustl.edu	37	19	12875651	12875651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	12875651	12875651	G	A	SNP	HOOK2	ENST00000397668	human	ensembl	74_37	-1	known	missense	c.1804	p.R602C	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_UBA-like	-	no_errors	HOOK2	HGNC	ENSG00000095066				277	0	0	61	39	39
MAST1	0	genome.wustl.edu	37	19	12985336	12985336	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	12985336	12985336	G	A	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	silent	c.4365	p.A1455	0.895	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				33	0	0	12	3	20
ZSWIM4	0	genome.wustl.edu	37	19	13941853	13941853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	13941853	13941853	C	T	SNP	ZSWIM4	ENST00000254323	human	ensembl	74_37	+1	known	missense	c.2959	p.R987C	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003				152	0	0	27	30	52.6316
IL27RA	0	genome.wustl.edu	37	19	14162495	14162495	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	14162495	14162495	C	T	SNP	IL27RA	ENST00000263379	human	ensembl	74_37	+1	known	silent	c.1605	p.S535	0.009	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998				137	0	0	34	2	5.55556
PCSK4	0	genome.wustl.edu	37	19	1487181	1487181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	1487181	1487181	C	T	SNP	PCSK4	ENST00000300954	human	ensembl	74_37	-1	known	missense	c.814	p.G272S	0.850	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK4	HGNC	ENSG00000115257				61	0	0	18	10	35.7143
ILVBL	0	genome.wustl.edu	37	19	15233799	15233799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	15233799	15233799	G	A	SNP	ILVBL	ENST00000263383	human	ensembl	74_37	-1	known	missense	c.508	p.R170W	1.000	pfam_Thiamin_PyroP_enz_TPP-bd_dom	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_TPP_enzyme-bd_C,pfam_Thiamin_PyroP_enz_cen_dom	-	no_errors	ILVBL	HGNC	ENSG00000105135				172	0	0	56	27	32.5301
CYP4F8	0	genome.wustl.edu	37	19	15739191	15739191	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	15739191	15739191	G	A	SNP	CYP4F8	ENST00000325723	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.222	-	-	-	no_errors	CYP4F8	HGNC	ENSG00000186526				181	0	0	69	37	34.9057
USHBP1	0	genome.wustl.edu	37	19	17366391	17366391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	17366391	17366391	G	A	SNP	USHBP1	ENST00000252597	human	ensembl	74_37	-1	known	missense	c.1495	p.R499W	0.001	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307				62	0	0	23	14	37.8378
USHBP1	0	genome.wustl.edu	37	19	17373521	17373521	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	17373521	17373521	C	A	SNP	USHBP1	ENST00000252597	human	ensembl	74_37	-1	known	missense	c.482	p.G161V	0.000	NULL	pfam_USH1C-bd_PDZ_domain	-	no_errors	USHBP1	HGNC	ENSG00000130307				198	0	0	62	33	34.7368
ABHD8	0	genome.wustl.edu	37	19	17412206	17412206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	17412206	17412206	C	T	SNP	ABHD8	ENST00000247706	human	ensembl	74_37	-1	known	missense	c.220	p.G74S	0.979	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD8	HGNC	ENSG00000127220				94	0	0	25	11	30.5556
B3GNT3	0	genome.wustl.edu	37	19	17918981	17918981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	17918981	17918981	G	A	SNP	B3GNT3	ENST00000318683	human	ensembl	74_37	+1	known	missense	c.365	p.R122H	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT3	HGNC	ENSG00000179913				69	0	0	22	17	43.5897
REXO1	0	genome.wustl.edu	37	19	1817235	1817235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	1817235	1817235	C	T	SNP	REXO1	ENST00000170168	human	ensembl	74_37	-1	known	missense	c.3184	p.A1062T	0.997	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313				120	0	0	25	5	16.6667
KLHL26	0	genome.wustl.edu	37	19	18779936	18779936	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	18779936	18779936	A	G	SNP	KLHL26	ENST00000300976	human	ensembl	74_37	+1	known	missense	c.1729	p.I577V	0.997	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487				121	1	0.819672	24	23	48.9362
PBX4	0	genome.wustl.edu	37	19	19681602	19681602	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	19681602	19681602	G	A	SNP	PBX4	ENST00000251203	human	ensembl	74_37	-1	known	silent	c.234	p.D78	0.996	pfam_PBX	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX4	HGNC	ENSG00000105717				186	0	0	57	35	38.0435
ZNF14	0	genome.wustl.edu	37	19	19823267	19823267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	19823267	19823267	C	T	SNP	ZNF14	ENST00000344099	human	ensembl	74_37	-1	known	missense	c.823	p.G275R	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF14	HGNC	ENSG00000105708				95	0	0	52	31	37.3494
AP3D1	0	genome.wustl.edu	37	19	2110223	2110223	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	2110223	2110223	C	T	SNP	AP3D1	ENST00000355272	human	ensembl	74_37	-1	known	missense	c.3176	p.G1059D	1.000	pfam_BLV_receptor	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000				133	0	0	26	13	33.3333
ZNF676	0	genome.wustl.edu	37	19	22375844	22375844	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	22375844	22375844	C	A	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	missense	c.104	p.R35I	0.058	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				235	0	0	100	37	27.0073
ZNF536	0	genome.wustl.edu	37	19	30936377	30936377	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	30936377	30936377	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	silent	c.1908	p.C636	0.789	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				315	0	0	89	36	28.8
DOHH	0	genome.wustl.edu	37	19	3496787	3496787	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	3496787	3496787	G	A	SNP	DOHH	ENST00000250937	human	ensembl	74_37	-1	known	missense	c.26	p.A9V	0.496	NULL	pfam_PBS_lyase_HEAT,superfamily_ARM-type_fold,smart_PBS_lyase_HEAT,pfscan_HEAT_type_2	-	no_errors	DOHH	HGNC	ENSG00000129932				94	0	0	26	14	35
ZNF302	0	genome.wustl.edu	37	19	35175306	35175306	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	35175306	35175306	G	A	SNP	ZNF302	ENST00000423823	human	ensembl	74_37	+1	known	missense	c.364	p.D122N	0.024	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF302	HGNC	ENSG00000089335				69	0	0	27	17	38.6364
RBM42	0	genome.wustl.edu	37	19	36124665	36124665	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	36124665	36124665	C	T	SNP	RBM42	ENST00000262633	human	ensembl	74_37	+1	known	missense	c.761	p.A254V	0.816	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254				22	0	0	8	3	27.2727
C19orf55	0	genome.wustl.edu	37	19	36258757	36258757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	36258757	36258757	G	A	SNP	C19orf55	ENST00000396908	human	ensembl	74_37	+1	known	missense	c.1010	p.R337Q	0.000	NULL	NULL	-	no_errors	C19orf55	HGNC	ENSG00000167595				53	0	0	12	5	29.4118
ARHGAP33	0	genome.wustl.edu	37	19	36272095	36272095	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	36272095	36272095	C	T	SNP	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	silent	c.1026	p.H342	0.581	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777				219	1	0.454545	58	29	33.3333
ARHGAP33	0	genome.wustl.edu	37	19	36276195	36276195	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	36276195	36276195	T	C	SNP	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	missense	c.1826	p.L609P	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777				110	0	0	53	9	14.5161
NPHS1	0	genome.wustl.edu	37	19	36330422	36330422	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	36330422	36330422	C	G	SNP	NPHS1	ENST00000378910	human	ensembl	74_37	-1	known	missense	c.2903	p.G968A	0.995	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NPHS1	HGNC	ENSG00000161270				235	0	0	86	20	18.8679
ZNF540	0	genome.wustl.edu	37	19	38103015	38103015	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	38103015	38103015	G	A	SNP	ZNF540	ENST00000316433	human	ensembl	74_37	+1	known	silent	c.834	p.K278	0.352	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817				85	0	0	27	14	34.1463
FCGBP	0	genome.wustl.edu	37	19	40433985	40433985	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	40433985	40433985	T	C	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.284	p.K95R	0.356	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				129	0	0	54	28	34.1463
CNTD2	0	genome.wustl.edu	37	19	40729347	40729347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	40729347	40729347	C	T	SNP	CNTD2	ENST00000430325	human	ensembl	74_37	-1	known	missense	c.620	p.G207D	0.057	superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CNTD2	HGNC	ENSG00000105219				40	0	0	20	3	13.0435
CYP2A13	0	genome.wustl.edu	37	19	41601775	41601775	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	41601775	41601775	G	A	SNP	CYP2A13	ENST00000330436	human	ensembl	74_37	+1	known	missense	c.1414	p.D472N	0.829	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838				322	0	0	97	64	39.7516
CYP2F1	0	genome.wustl.edu	37	19	41630686	41630686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	41630686	41630686	C	T	SNP	CYP2F1	ENST00000331105	human	ensembl	74_37	+1	known	missense	c.1027	p.R343C	0.999	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_CYP2_fam,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2F1	HGNC	ENSG00000197446				45	0	0	11	9	45
ZNF574	0	genome.wustl.edu	37	19	42585373	42585373	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	42585373	42585373	T	C	SNP	ZNF574	ENST00000222339	human	ensembl	74_37	+1	known	missense	c.2885	p.V962A	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732				203	0	0	61	41	40.1961
MEGF8	0	genome.wustl.edu	37	19	42853826	42853826	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	42853826	42853826	A	G	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	missense	c.2474	p.D825G	1.000	NULL	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				210	1	0.473934	62	34	35.4167
MEGF8	0	genome.wustl.edu	37	19	42880471	42880471	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	42880471	42880471	C	T	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	silent	c.8082	p.S2694	1.000	NULL	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				86	0	0	19	12	38.7097
LIPE	0	genome.wustl.edu	37	19	42911769	42911769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	42911769	42911769	G	A	SNP	LIPE	ENST00000244289	human	ensembl	74_37	-1	known	missense	c.1831	p.R611C	0.999	pfam_HSL_N	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435				133	0	0	30	12	28.5714
CHAF1A	0	genome.wustl.edu	37	19	4430584	4430584	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	4430584	4430584	C	T	SNP	CHAF1A	ENST00000301280	human	ensembl	74_37	+1	known	silent	c.1893	p.D631	0.727	pfam_CAF1A	pfam_CAF1A	-	no_errors	CHAF1A	HGNC	ENSG00000167670				185	0	0	40	23	36.5079
SEMA6B	0	genome.wustl.edu	37	19	4558377	4558377	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	4558377	4558377	C	T	SNP	SEMA6B	ENST00000301293	human	ensembl	74_37	-1	known	silent	c.93	p.P31	0.973	pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6B	HGNC	ENSG00000167680				9	0	0	1	6	85.7143
ZC3H4	0	genome.wustl.edu	37	19	47572412	47572412	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	47572412	47572412	C	G	SNP	ZC3H4	ENST00000253048	human	ensembl	74_37	-1	known	missense	c.2335	p.E779Q	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H4	HGNC	ENSG00000130749				260	0	0	66	35	34.6535
SLC8A2	0	genome.wustl.edu	37	19	47969509	47969509	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	47969509	47969509	G	T	SNP	SLC8A2	ENST00000236877	human	ensembl	74_37	-1	known	missense	c.152	p.P51Q	0.980	tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160				17	0	0	11	7	38.8889
TPRX2P	0	genome.wustl.edu	37	19	48337743	48337743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	48337743	48337743	G	A	SNP	TPRX2P	ENST00000535362	human	ensembl	74_37	+1	known	missense	c.43	p.A15T	0.997	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TPRX2P	HGNC	ENSG00000259009				100	0	0	26	16	38.0952
GRIN2D	0	genome.wustl.edu	37	19	48918144	48918144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	48918144	48918144	C	T	SNP	GRIN2D	ENST00000263269	human	ensembl	74_37	+1	known	missense	c.1436	p.P479L	0.983	smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464				218	0	0	48	28	36.8421
LMTK3	0	genome.wustl.edu	37	19	49001494	49001494	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	49001494	49001494	C	T	SNP	LMTK3	ENST00000270238	human	ensembl	74_37	-1	known	silent	c.2919	p.A973	0.088	smart_Ser/Thr_dual-sp_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235				200	0	0	48	28	36.8421
ARRDC5	0	genome.wustl.edu	37	19	4902691	4902691	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	4902691	4902691	G	A	SNP	ARRDC5	ENST00000381781	human	ensembl	74_37	-1	known	silent	c.189	p.Y63	0.035	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC5	HGNC	ENSG00000205784				317	0	0	82	56	40.5797
TULP2	0	genome.wustl.edu	37	19	49388705	49388705	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	49388705	49388705	C	A	SNP	TULP2	ENST00000221399	human	ensembl	74_37	-1	known	missense	c.1061	p.R354I	1.000	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP2	HGNC	ENSG00000104804				152	1	0.653595	73	25	25.5102
HRC	0	genome.wustl.edu	37	19	49658225	49658225	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	49658225	49658225	C	A	SNP	HRC	ENST00000252825	human	ensembl	74_37	-1	known	missense	c.270	p.K90N	0.008	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528				186	0	0	72	26	26.5306
AP2A1	0	genome.wustl.edu	37	19	50302631	50302631	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	50302631	50302631	T	C	SNP	AP2A1	ENST00000354293	human	ensembl	74_37	+1	known	missense	c.1013	p.L338P	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961				46	0	0	13	5	27.7778
NUP62	0	genome.wustl.edu	37	19	50411685	50411685	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	50411685	50411685	C	T	SNP	NUP62	ENST00000352066	human	ensembl	74_37	-1	known	silent	c.1380	p.T460	0.002	NULL	pfam_Nucleoporin_NSP1_C	-	no_errors	NUP62	HGNC	ENSG00000213024				319	0	0	80	37	31.6239
CLEC11A	0	genome.wustl.edu	37	19	51228569	51228569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	51228569	51228569	G	A	SNP	CLEC11A	ENST00000250340	human	ensembl	74_37	+1	known	missense	c.817	p.G273S	0.096	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC11A	HGNC	ENSG00000105472				67	0	0	9	7	43.75
KLK4	0	genome.wustl.edu	37	19	51411929	51411929	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	51411929	51411929	G	A	SNP	KLK4	ENST00000324041	human	ensembl	74_37	-1	known	silent	c.381	p.S127	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK4	HGNC	ENSG00000167749				123	0	0	42	27	39.1304
KLK5	0	genome.wustl.edu	37	19	51453227	51453227	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	51453227	51453227	G	A	SNP	KLK5	ENST00000336334	human	ensembl	74_37	-1	known	silent	c.219	p.C73	0.707	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK5	HGNC	ENSG00000167754				63	0	0	15	3	16.6667
KLK10	0	genome.wustl.edu	37	19	51518125	51518125	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	51518125	51518125	C	T	SNP	KLK10	ENST00000309958	human	ensembl	74_37	-1	known	silent	c.762	p.Q254	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK10	HGNC	ENSG00000129451				173	0	0	62	19	23.4568
ZNF320	0	genome.wustl.edu	37	19	53384267	53384267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	53384267	53384267	C	T	SNP	ZNF320	ENST00000391781	human	ensembl	74_37	-1	known	missense	c.1112	p.R371H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF320	HGNC	ENSG00000182986				215	0	0	123	52	29.7143
ZNF665	0	genome.wustl.edu	37	19	53668313	53668313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	53668313	53668313	C	T	SNP	ZNF665	ENST00000396424	human	ensembl	74_37	-1	known	missense	c.1430	p.R477Q	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497				164	0	0	83	44	34.6457
ZNF665	0	genome.wustl.edu	37	19	53669274	53669274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	53669274	53669274	G	A	SNP	ZNF665	ENST00000396424	human	ensembl	74_37	-1	known	missense	c.469	p.H157Y	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497				165	0	0	87	60	40.8163
PRKCG	0	genome.wustl.edu	37	19	54401692	54401692	+	Splice_Site	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	54401692	54401692	A	G	SNP	PRKCG	ENST00000540413	human	ensembl	74_37	+1	known	splice_site	c.1093-2	e11-2	1.000	-	-	-	no_errors	PRKCG	HGNC	ENSG00000126583				128	0	0	26	15	36.5854
LAIR1	0	genome.wustl.edu	37	19	54866912	54866912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	54866912	54866912	C	T	SNP	LAIR1	ENST00000391742	human	ensembl	74_37	-1	known	missense	c.829	p.E277K	0.002	NULL	smart_Ig_sub	-	no_errors	LAIR1	HGNC	ENSG00000167613				262	0	0	83	43	34.127
NLRP7	0	genome.wustl.edu	37	19	55450565	55450565	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	55450565	55450565	C	T	SNP	NLRP7	ENST00000446217	human	ensembl	74_37	-1	known	missense	c.1706	p.R569Q	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634				139	0	0	56	32	36.3636
ENSG00000267149	0	genome.wustl.edu	37	19	55556400	55556400	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	55556400	55556400	G	A	SNP	ENSG00000267149	ENST00000585492	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTC-550B14.6	Clone_based_vega_gene	ENSG00000267149				52	0	0	15	7	31.8182
EPS8L1	0	genome.wustl.edu	37	19	55594834	55594834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	55594834	55594834	G	A	SNP	EPS8L1	ENST00000201647	human	ensembl	74_37	+1	known	missense	c.1303	p.A435T	0.769	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037				47	0	0	13	8	38.0952
PTPRH	0	genome.wustl.edu	37	19	55715343	55715343	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	55715343	55715343	G	A	SNP	PTPRH	ENST00000376350	human	ensembl	74_37	-1	known	silent	c.693	p.P231	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031				150	0	0	67	43	39.0909
CCDC106	0	genome.wustl.edu	37	19	56163869	56163869	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	56163869	56163869	G	A	SNP	CCDC106	ENST00000308964	human	ensembl	74_37	+1	known	silent	c.600	p.S200	0.013	NULL	NULL	-	no_errors	CCDC106	HGNC	ENSG00000173581				95	0	0	27	15	35.7143
U2AF2	0	genome.wustl.edu	37	19	56172557	56172557	+	Splice_Site	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	56172557	56172557	T	C	SNP	U2AF2	ENST00000308924	human	ensembl	74_37	+1	known	splice_site	c.486+2	e5+2	1.000	-	-	-	no_errors	U2AF2	HGNC	ENSG00000063244				37	0	0	13	14	51.8519
ZNF667	0	genome.wustl.edu	37	19	56952725	56952725	+	Silent	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	56952725	56952725	T	G	SNP	ZNF667	ENST00000342634	human	ensembl	74_37	-1	known	silent	c.2023	p.R675	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF667	HGNC	ENSG00000198046				115	0	0	66	35	34.6535
ZNF460	0	genome.wustl.edu	37	19	57803352	57803352	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	57803352	57803352	C	T	SNP	ZNF460	ENST00000360338	human	ensembl	74_37	+1	known	silent	c.1443	p.C481	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714				148	0	0	61	35	36.4583
ZNF324B	0	genome.wustl.edu	37	19	58967034	58967034	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	58967034	58967034	G	A	SNP	ZNF324B	ENST00000336614	human	ensembl	74_37	+1	known	silent	c.723	p.S241	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324B	HGNC	ENSG00000249471				54	0	0	15	9	37.5
ZNF446	0	genome.wustl.edu	37	19	58988901	58988901	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	58988901	58988901	C	T	SNP	ZNF446	ENST00000594369	human	ensembl	74_37	+1	known	missense	c.316	p.H106Y	0.300	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF446	HGNC	ENSG00000083838				95	0	0	24	16	40
RPL23AP79	0	genome.wustl.edu	37	19	59097549	59097549	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	59097549	59097549	G	A	SNP	RPL23AP79	ENST00000473164	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	RPL23AP79	HGNC	ENSG00000213753				24	0	0	9	6	40
GTF2F1	0	genome.wustl.edu	37	19	6380351	6380351	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	6380351	6380351	G	A	SNP	GTF2F1	ENST00000394456	human	ensembl	74_37	-1	known	nonsense	c.1495	p.R499*	1.000	pfam_TFIIF-alpha	pfam_TFIIF-alpha,superfamily_TFIIF_interaction	-	no_errors	GTF2F1	HGNC	ENSG00000125651				484	2	0.411523	142	77	35.1598
MISP	0	genome.wustl.edu	37	19	758107	758107	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	758107	758107	C	T	SNP	MISP	ENST00000215582	human	ensembl	74_37	+1	known	silent	c.1161	p.P387	0.000	NULL	NULL	-	no_errors	MISP	HGNC	ENSG00000099812				40	0	0	15	7	31.8182
STXBP2	0	genome.wustl.edu	37	19	7704641	7704641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	7704641	7704641	G	A	SNP	STXBP2	ENST00000221283	human	ensembl	74_37	+1	known	missense	c.194	p.R65Q	0.634	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP2	HGNC	ENSG00000076944				60	0	0	19	15	44.1176
MAP2K7	0	genome.wustl.edu	37	19	7975374	7975374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	7975374	7975374	C	T	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.610	p.R204C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				50	0	0	17	7	29.1667
MAP2K7	0	genome.wustl.edu	37	19	7976016	7976016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	7976016	7976016	G	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.953	p.R318Q	0.997	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				77	0	0	12	13	52
ELAVL1	0	genome.wustl.edu	37	19	8028518	8028518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	8028518	8028518	C	T	SNP	ELAVL1	ENST00000351593	human	ensembl	74_37	-1	known	missense	c.911	p.R304H	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL1	HGNC	ENSG00000066044				255	0	0	84	48	36.3636
FBN3	0	genome.wustl.edu	37	19	8197972	8197972	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	8197972	8197972	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.1610	p.T537I	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				13	0	0	3	5	62.5
MARCH2	0	genome.wustl.edu	37	19	8495651	8495651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	8495651	8495651	G	A	SNP	MARCH2	ENST00000215555	human	ensembl	74_37	+1	known	missense	c.482	p.R161H	0.997	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	MARCH2	HGNC	ENSG00000099785				109	0	0	30	20	40
MUC16	0	genome.wustl.edu	37	19	9084370	9084370	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	9084370	9084370	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.7445	p.D2482A	0.006	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				133	0	0	42	21	33.3333
OR7D2	0	genome.wustl.edu	37	19	9296544	9296544	+	Silent	SNP	G	G	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	9296544	9296544	G	C	SNP	OR7D2	ENST00000344248	human	ensembl	74_37	+1	known	silent	c.87	p.G29	0.098	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D2	HGNC	ENSG00000188000				100	0	0	44	26	37.1429
ZNF562	0	genome.wustl.edu	37	19	9764018	9764018	+	Silent	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	9764018	9764018	G	T	SNP	ZNF562	ENST00000448622	human	ensembl	74_37	-1	known	silent	c.888	p.S296	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF562	HGNC	ENSG00000171466				138	0	0	112	9	7.43802
POU3F3	0	genome.wustl.edu	37	2	105473199	105473199	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	105473199	105473199	A	G	SNP	POU3F3	ENST00000361360	human	ensembl	74_37	+1	known	missense	c.1231	p.T411A	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F3	HGNC	ENSG00000198914				99	0	0	23	9	28.125
IL1B	0	genome.wustl.edu	37	2	113591057	113591057	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	113591057	113591057	C	T	SNP	IL1B	ENST00000263341	human	ensembl	74_37	-1	known	silent	c.195	p.A65	0.002	pfam_IL-1_propep,prints_IL-1_beta,prints_IL-1_alpha/beta	pfam_IL-1,pfam_IL-1_propep,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1_beta,prints_IL-1_alpha/beta,prints_IL-1,prints_IL-1_fam/FGF_fam,prints_IL-1RA/IL-36	-	no_errors	IL1B	HGNC	ENSG00000125538				238	0	0	70	41	36.9369
IL37	0	genome.wustl.edu	37	2	113676235	113676235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	113676235	113676235	C	T	SNP	IL37	ENST00000263326	human	ensembl	74_37	+1	known	missense	c.506	p.S169L	0.714	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1,prints_IL-1RA/IL-36	-	no_errors	IL37	HGNC	ENSG00000125571				70	0	0	39	22	36.0656
GREB1	0	genome.wustl.edu	37	2	11759033	11759033	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	11759033	11759033	C	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	silent	c.4032	p.S1344	0.960	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				10	0	0	7	6	46.1538
LPIN1	0	genome.wustl.edu	37	2	11928551	11928551	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	11928551	11928551	C	A	SNP	LPIN1	ENST00000449576	human	ensembl	74_37	+1	known	missense	c.1829	p.A610E	1.000	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,superfamily_WD40_repeat_dom,smart_LNS2	-	no_errors	LPIN1	HGNC	ENSG00000134324				132	0	0	57	25	30.4878
C1QL2	0	genome.wustl.edu	37	2	119915212	119915212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	119915212	119915212	G	A	SNP	C1QL2	ENST00000272520	human	ensembl	74_37	-1	known	missense	c.634	p.R212C	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QL2	HGNC	ENSG00000144119				60	0	0	28	5	15.1515
C1QL2	0	genome.wustl.edu	37	2	119915381	119915381	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	119915381	119915381	G	A	SNP	C1QL2	ENST00000272520	human	ensembl	74_37	-1	known	silent	c.465	p.S155	0.887	smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QL2	HGNC	ENSG00000144119				20	0	0	8	4	33.3333
INHBB	0	genome.wustl.edu	37	2	121104067	121104067	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	121104067	121104067	C	T	SNP	INHBB	ENST00000295228	human	ensembl	74_37	+1	known	silent	c.303	p.A101	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaB,prints_Inhibin_asu	-	no_errors	INHBB	HGNC	ENSG00000163083				28	0	0	3	5	62.5
GLI2	0	genome.wustl.edu	37	2	121726317	121726317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	121726317	121726317	C	T	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	missense	c.671	p.T224M	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				228	0	0	62	13	17.3333
LIMS2	0	genome.wustl.edu	37	2	128399650	128399650	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	128399650	128399650	C	T	SNP	LIMS2	ENST00000324938	human	ensembl	74_37	-1	known	missense	c.706	p.A236T	1.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS2	HGNC	ENSG00000072163				43	0	0	10	7	41.1765
PLEKHB2	0	genome.wustl.edu	37	2	131883388	131883388	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	131883388	131883388	T	C	SNP	PLEKHB2	ENST00000303908	human	ensembl	74_37	+1	known	missense	c.100	p.Y34H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB2	HGNC	ENSG00000115762				140	0	0	55	38	40.8602
LOC150776	0	genome.wustl.edu	37	2	132275302	132275302	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	132275302	132275302	C	T	SNP	LOC150776	ENST00000438378	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	AC093838.4	Clone_based_vega_gene	ENSG00000152117				44	0	0	11	10	47.619
LCT	0	genome.wustl.edu	37	2	136566101	136566101	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	136566101	136566101	G	A	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	silent	c.3816	p.T1272	0.253	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				252	0	0	111	60	35.0877
HNMT	0	genome.wustl.edu	37	2	138738920	138738920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	138738920	138738920	C	T	SNP	HNMT	ENST00000329366	human	ensembl	74_37	+1	known	missense	c.325	p.R109C	0.000	NULL	NULL	-	no_errors	HNMT	HGNC	ENSG00000150540				176	0	0	81	31	27.6786
KYNU	0	genome.wustl.edu	37	2	143718233	143718233	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	143718233	143718233	T	A	SNP	KYNU	ENST00000264170	human	ensembl	74_37	+1	known	missense	c.623	p.I208N	1.000	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919				98	0	0	48	19	28.3582
RIF1	0	genome.wustl.edu	37	2	152321548	152321548	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	152321548	152321548	T	G	SNP	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	missense	c.5514	p.I1838M	0.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				129	0	0	64	41	39.0476
RIF1	0	genome.wustl.edu	37	2	152324631	152324631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	152324631	152324631	G	A	SNP	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	missense	c.6718	p.V2240I	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				84	0	0	47	26	35.6164
NBAS	0	genome.wustl.edu	37	2	15493765	15493765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	15493765	15493765	C	T	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.4001	p.R1334H	0.923	pfam_Sec39	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				247	1	0.403226	83	55	39.8551
FIGN	0	genome.wustl.edu	37	2	164467865	164467865	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	164467865	164467865	T	C	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	silent	c.477	p.T159	0.890	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263				117	0	0	62	33	34.7368
SCN1A	0	genome.wustl.edu	37	2	166848723	166848723	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	166848723	166848723	C	A	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.5062	p.G1688W	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				286	0	0	109	63	36.6279
SCN1A	0	genome.wustl.edu	37	2	166901611	166901611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	166901611	166901611	C	T	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.1604	p.R535H	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				205	0	0	104	48	31.5789
SCN7A	0	genome.wustl.edu	37	2	167327173	167327173	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	167327173	167327173	G	T	SNP	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	missense	c.616	p.Q206K	0.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546				42	0	0	12	12	50
SP5	0	genome.wustl.edu	37	2	171573014	171573014	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	171573014	171573014	G	A	SNP	SP5	ENST00000375281	human	ensembl	74_37	+1	known	silent	c.297	p.T99	0.124	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP5	HGNC	ENSG00000204335				56	0	0	16	5	23.8095
EVX2	0	genome.wustl.edu	37	2	176945393	176945393	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	176945393	176945393	G	A	SNP	EVX2	ENST00000308618	human	ensembl	74_37	-1	known	silent	c.873	p.G291	0.450	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1,prints_Homeobox_metazoa	-	no_errors	EVX2	HGNC	ENSG00000174279				30	0	0	2	2	50
TTN	0	genome.wustl.edu	37	2	179452435	179452435	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	179452435	179452435	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	nonsense	c.55897	p.R18633*	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				78	0	0	12	15	55.5556
TTN	0	genome.wustl.edu	37	2	179517650	179517650	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	179517650	179517650	C	G	SNP	TTN	ENST00000589042	human	ensembl	74_37	-1	putative	missense	c.38884	p.A12962P	0.025	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				243	0	0	41	46	52.8736
TTN	0	genome.wustl.edu	37	2	179634421	179634421	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	179634421	179634421	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.8887	p.T2963P	1.000	superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				128	1	0.775194	34	36	51.4286
TTN	0	genome.wustl.edu	37	2	179638766	179638766	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	179638766	179638766	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.7129	p.V2377F	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				167	0	0	34	35	50.7246
COL5A2	0	genome.wustl.edu	37	2	189953419	189953419	+	Splice_Site	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	189953419	189953419	A	G	SNP	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	splice_site	c.645+2	e8+2	1.000	-	-	-	no_errors	COL5A2	HGNC	ENSG00000204262				164	0	0	30	29	49.1525
C2orf66	0	genome.wustl.edu	37	2	197672333	197672333	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	197672333	197672333	A	C	SNP	C2orf66	ENST00000342506	human	ensembl	74_37	-1	known	missense	c.188	p.L63R	1.000	NULL	NULL	-	no_errors	C2orf66	HGNC	ENSG00000187944				225	0	0	88	43	32.8244
NDUFB3	0	genome.wustl.edu	37	2	201943742	201943742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	201943742	201943742	G	A	SNP	NDUFB3	ENST00000237889	human	ensembl	74_37	+1	known	missense	c.137	p.G46D	0.978	pfam_NDUFB3	pfam_NDUFB3	-	no_errors	NDUFB3	HGNC	ENSG00000119013				50	0	0	25	14	35.8974
BMPR2	0	genome.wustl.edu	37	2	203383649	203383649	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	203383649	203383649	C	T	SNP	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	silent	c.726	p.N242	0.994	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				199	0	0	96	54	36
NRP2	0	genome.wustl.edu	37	2	206608102	206608102	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	206608102	206608102	G	A	SNP	NRP2	ENST00000360409	human	ensembl	74_37	+1	known	silent	c.1467	p.Q489	1.000	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257				138	0	0	59	27	31.3953
FASTKD2	0	genome.wustl.edu	37	2	207655375	207655375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	207655375	207655375	C	T	SNP	FASTKD2	ENST00000236980	human	ensembl	74_37	+1	known	missense	c.1978	p.R660W	0.993	pfam_RAP,smart_RAP	pfam_FAST_Leu-rich,pfam_FAST_2,pfam_RAP,smart_RAP	-	no_errors	FASTKD2	HGNC	ENSG00000118246				224	0	0	97	42	30.2158
CRYGEP	0	genome.wustl.edu	37	2	208977023	208977023	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	208977023	208977023	G	A	SNP	CRYGEP	ENST00000440809	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	CRYGEP	HGNC	ENSG00000229150				30	0	0	9	3	25
IDH1	0	genome.wustl.edu	37	2	209104637	209104637	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	209104637	209104637	C	T	SNP	IDH1	ENST00000345146	human	ensembl	74_37	-1	known	missense	c.941	p.R314H	0.999	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	-	no_errors	IDH1	HGNC	ENSG00000138413				150	0	0	62	42	40.3846
MAP2	0	genome.wustl.edu	37	2	210558967	210558967	+	Silent	SNP	T	T	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	210558967	210558967	T	A	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.2073	p.G691	0.005	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				281	0	0	134	72	34.9515
MAP2	0	genome.wustl.edu	37	2	210588406	210588406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	210588406	210588406	G	A	SNP	MAP2	ENST00000199940	human	ensembl	74_37	+1	known	missense	c.1264	p.G422R	1.000	pfam_MAP_tubulin-bd_rpt	pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				76	0	0	27	20	42.5532
LANCL1	0	genome.wustl.edu	37	2	211306124	211306124	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	211306124	211306124	T	C	SNP	LANCL1	ENST00000233714	human	ensembl	74_37	-1	known	missense	c.451	p.M151V	1.000	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LANC-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL1	HGNC	ENSG00000115365				248	0	0	115	42	26.7516
APOB	0	genome.wustl.edu	37	2	21225676	21225676	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	21225676	21225676	C	T	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.12618	p.G4206	0.021	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				88	0	0	53	27	33.75
MREG	0	genome.wustl.edu	37	2	216810399	216810399	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	216810399	216810399	A	C	SNP	MREG	ENST00000263268	human	ensembl	74_37	-1	known	missense	c.405	p.D135E	1.000	NULL	NULL	-	no_errors	MREG	HGNC	ENSG00000118242				64	0	0	34	18	34.6154
ARPC2	0	genome.wustl.edu	37	2	219118720	219118720	+	RNA	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	219118720	219118720	G	T	SNP	ARPC2	ENST00000477992	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ARPC2	HGNC	ENSG00000163466				63	0	0	29	16	35.5556
C2orf62	0	genome.wustl.edu	37	2	219227522	219227522	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	219227522	219227522	C	T	SNP	C2orf62	ENST00000289388	human	ensembl	74_37	+1	known	missense	c.527	p.A176V	1.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C2orf62	HGNC	ENSG00000158428				143	0	0	55	29	34.5238
ABCB6	0	genome.wustl.edu	37	2	220080779	220080779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	220080779	220080779	C	T	SNP	ABCB6	ENST00000265316	human	ensembl	74_37	-1	known	missense	c.1094	p.R365H	0.997	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB6	HGNC	ENSG00000115657				24	0	0	8	2	20
SPEG	0	genome.wustl.edu	37	2	220299720	220299720	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	220299720	220299720	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	silent	c.21	p.T7	0.976	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				10	0	0	1	3	75
OBSL1	0	genome.wustl.edu	37	2	220418391	220418391	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	220418391	220418391	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.4894	p.V1632M	0.978	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				59	0	0	16	6	27.2727
OBSL1	0	genome.wustl.edu	37	2	220428089	220428089	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	220428089	220428089	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.2668	p.V890I	0.907	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				45	0	0	9	7	43.75
SLC4A3	0	genome.wustl.edu	37	2	220500425	220500425	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	220500425	220500425	C	A	SNP	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	missense	c.2084	p.A695E	0.007	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				28	0	0	6	2	25
ACSL3	0	genome.wustl.edu	37	2	223791818	223791818	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	223791818	223791818	C	T	SNP	ACSL3	ENST00000357430	human	ensembl	74_37	+1	known	missense	c.1376	p.T459M	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL3	HGNC	ENSG00000123983				108	0	0	57	23	28.75
SCG2	0	genome.wustl.edu	37	2	224463302	224463302	+	Silent	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	224463302	224463302	G	T	SNP	SCG2	ENST00000305409	human	ensembl	74_37	-1	known	silent	c.699	p.I233	0.034	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951				273	1	0.364964	157	79	33.4746
NMUR1	0	genome.wustl.edu	37	2	232393263	232393263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	232393263	232393263	C	T	SNP	NMUR1	ENST00000305141	human	ensembl	74_37	-1	known	missense	c.469	p.V157M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NeuromedU_rcpt_1,prints_NeuromedU_rcpt,prints_GPCR_Rhodpsn	-	no_errors	NMUR1	HGNC	ENSG00000171596				103	0	0	31	16	34.0426
ECEL1	0	genome.wustl.edu	37	2	233346298	233346298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	233346298	233346298	G	A	SNP	ECEL1	ENST00000304546	human	ensembl	74_37	-1	known	missense	c.1907	p.T636M	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECEL1	HGNC	ENSG00000171551				92	0	0	16	11	40.7407
LOC100286922	0	genome.wustl.edu	37	2	234663836	234663836	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	234663836	234663836	G	A	SNP	LOC100286922	ENST00000389816	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC114812.5	Clone_based_vega_gene	ENSG00000178836				106	0	0	38	7	15.5556
COL6A3	0	genome.wustl.edu	37	2	238277492	238277492	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	238277492	238277492	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	silent	c.4614	p.D1538	0.020	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				154	0	0	62	40	39.2157
ASB1	0	genome.wustl.edu	37	2	239353002	239353002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	239353002	239353002	G	A	SNP	ASB1	ENST00000264607	human	ensembl	74_37	+1	known	missense	c.514	p.V172I	0.992	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB1	HGNC	ENSG00000065802				85	0	0	25	16	39.0244
PRR21	0	genome.wustl.edu	37	2	240981445	240981445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	240981445	240981445	G	A	SNP	PRR21	ENST00000408934	human	ensembl	74_37	-1	known	missense	c.955	p.R319W	0.000	NULL	NULL	-	no_errors	PRR21	HGNC	ENSG00000221961				235	0	0	47	20	29.8507
KIF1A	0	genome.wustl.edu	37	2	241712648	241712648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	241712648	241712648	G	A	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	missense	c.1063	p.R355C	1.000	superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				123	0	0	36	16	30.7692
HDLBP	0	genome.wustl.edu	37	2	242170272	242170272	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	242170272	242170272	G	A	SNP	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	nonsense	c.3376	p.Q1126*	0.999	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				132	0	0	49	17	25.7576
D2HGDH	0	genome.wustl.edu	37	2	242707374	242707374	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	242707374	242707374	G	A	SNP	D2HGDH	ENST00000321264	human	ensembl	74_37	+1	known	missense	c.1556	p.S519N	0.004	superfamily_FAD-linked_Oxase-like_C	pfam_FAD-linked_oxidase_C,pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2,superfamily_FAD-linked_Oxase-like_C	-	no_errors	D2HGDH	HGNC	ENSG00000180902				18	0	0	6	2	25
TTC27	0	genome.wustl.edu	37	2	33002975	33002975	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	33002975	33002975	T	C	SNP	TTC27	ENST00000317907	human	ensembl	74_37	+1	known	silent	c.1707	p.C569	1.000	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699				99	0	0	34	14	29.1667
COLEC11	0	genome.wustl.edu	37	2	3651971	3651971	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	3651971	3651971	T	C	SNP	COLEC11	ENST00000418971	human	ensembl	74_37	+1	known	missense	c.83	p.L28P	1.000	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	COLEC11	HGNC	ENSG00000118004				252	0	0	75	42	35.8974
STRN	0	genome.wustl.edu	37	2	37132704	37132704	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	37132704	37132704	T	C	SNP	STRN	ENST00000263918	human	ensembl	74_37	-1	known	missense	c.470	p.Q157R	1.000	pfam_Striatin_N	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN	HGNC	ENSG00000115808				128	0	0	87	35	28.6885
CDC42EP3	0	genome.wustl.edu	37	2	37873629	37873629	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	37873629	37873629	C	T	SNP	CDC42EP3	ENST00000295324	human	ensembl	74_37	-1	known	silent	c.102	p.P34	0.008	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP3	HGNC	ENSG00000163171				300	0	0	164	18	9.89011
CYP1B1	0	genome.wustl.edu	37	2	38298186	38298186	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	38298186	38298186	C	T	SNP	CYP1B1	ENST00000260630	human	ensembl	74_37	-1	known	silent	c.1311	p.P437	0.003	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1B1	HGNC	ENSG00000138061				98	0	0	36	26	41.9355
OXER1	0	genome.wustl.edu	37	2	42990345	42990345	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	42990345	42990345	G	A	SNP	OXER1	ENST00000378661	human	ensembl	74_37	-1	known	silent	c.975	p.S325	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	OXER1	HGNC	ENSG00000162881				44	0	0	12	5	29.4118
SOCS5	0	genome.wustl.edu	37	2	46986977	46986977	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	46986977	46986977	C	G	SNP	SOCS5	ENST00000306503	human	ensembl	74_37	+1	known	missense	c.1308	p.N436K	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS5	HGNC	ENSG00000171150				198	0	0	103	44	29.932
NRXN1	0	genome.wustl.edu	37	2	51253549	51253549	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	51253549	51253549	T	C	SNP	NRXN1	ENST00000404971	human	ensembl	74_37	-1	novel	silent	c.831	p.G277	0.003	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				17	0	0	9	2	18.1818
RTN4	0	genome.wustl.edu	37	2	55254522	55254522	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	55254522	55254522	A	G	SNP	RTN4	ENST00000337526	human	ensembl	74_37	-1	known	missense	c.713	p.L238P	0.993	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310				98	0	0	44	25	36.2319
LGALSL	0	genome.wustl.edu	37	2	64685463	64685463	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	64685463	64685463	T	C	SNP	LGALSL	ENST00000409537	human	ensembl	74_37	+1	putative	missense	c.242	p.M81T	1.000	NULL	superfamily_ConA-like_lec_gl_sf	-	no_errors	LGALSL	HGNC	ENSG00000119862				309	0	0	118	84	41.5842
GFPT1	0	genome.wustl.edu	37	2	69577301	69577301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	69577301	69577301	C	T	SNP	GFPT1	ENST00000357308	human	ensembl	74_37	-1	known	missense	c.754	p.G252R	1.000	NULL	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT1	HGNC	ENSG00000198380				62	0	0	27	15	35.7143
ANXA4	0	genome.wustl.edu	37	2	70033528	70033528	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	70033528	70033528	C	T	SNP	ANXA4	ENST00000394295	human	ensembl	74_37	+1	known	silent	c.204	p.D68	0.230	pfam_Annexin_repeat,smart_Annexin_repeat	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIV,prints_AnnexinV	-	no_errors	ANXA4	HGNC	ENSG00000196975				91	0	0	27	17	38.6364
PCYOX1	0	genome.wustl.edu	37	2	70502205	70502205	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	70502205	70502205	G	A	SNP	PCYOX1	ENST00000433351	human	ensembl	74_37	+1	known	silent	c.609	p.L203	1.000	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1	HGNC	ENSG00000116005				211	0	0	142	15	9.55414
RNF144A	0	genome.wustl.edu	37	2	7137076	7137076	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	7137076	7137076	C	T	SNP	RNF144A	ENST00000320892	human	ensembl	74_37	+1	known	missense	c.19	p.R7W	1.000	NULL	pfam_Znf_C6HC,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF144A	HGNC	ENSG00000151692				81	0	0	44	7	13.7255
ZNF638	0	genome.wustl.edu	37	2	71576560	71576560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	71576560	71576560	G	A	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	missense	c.476	p.R159H	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				101	0	0	55	30	35.2941
CCT7	0	genome.wustl.edu	37	2	73477497	73477497	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	73477497	73477497	C	T	SNP	CCT7	ENST00000258091	human	ensembl	74_37	+1	known	silent	c.1134	p.A378	0.905	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_eta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_eta	-	no_errors	CCT7	HGNC	ENSG00000135624				258	0	0	98	54	35.5263
KDM3A	0	genome.wustl.edu	37	2	86669239	86669239	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	86669239	86669239	C	T	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	silent	c.69	p.A23	0.885	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				156	1	0.636943	35	19	35.1852
KDM3A	0	genome.wustl.edu	37	2	86705071	86705071	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	86705071	86705071	A	G	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	missense	c.2011	p.N671D	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				202	0	0	71	44	38.2609
TEKT4	0	genome.wustl.edu	37	2	95537341	95537341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	95537341	95537341	C	T	SNP	TEKT4	ENST00000295201	human	ensembl	74_37	+1	known	missense	c.17	p.P6L	0.011	NULL	pfam_Tektin,prints_Tektin	-	no_errors	TEKT4	HGNC	ENSG00000163060				24	0	0	8	4	33.3333
CNGA3	0	genome.wustl.edu	37	2	98996645	98996645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	98996645	98996645	C	T	SNP	CNGA3	ENST00000272602	human	ensembl	74_37	+1	known	missense	c.223	p.R75C	0.271	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191				109	0	0	35	22	38.5965
DEFB126	0	genome.wustl.edu	37	20	126054	126054	+	Splice_Site	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	126054	126054	A	G	SNP	DEFB126	ENST00000382398	human	ensembl	74_37	+1	known	splice_site	c.59-2	e2-2	0.413	-	-	-	no_errors	DEFB126	HGNC	ENSG00000125788				74	0	0	35	13	27.0833
OTOR	0	genome.wustl.edu	37	20	16730619	16730619	+	Silent	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	16730619	16730619	T	G	SNP	OTOR	ENST00000246081	human	ensembl	74_37	+1	known	silent	c.327	p.R109	0.902	superfamily_SH3_domain,smart_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	OTOR	HGNC	ENSG00000125879				56	0	0	29	16	35.5556
SIRPA	0	genome.wustl.edu	37	20	1902058	1902058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	1902058	1902058	G	A	SNP	SIRPA	ENST00000400068	human	ensembl	74_37	+1	known	missense	c.454	p.V152M	0.052	pfscan_Ig-like_dom	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPA	HGNC	ENSG00000198053				88	0	0	39	24	38.0952
SLC24A3	0	genome.wustl.edu	37	20	19674007	19674007	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	19674007	19674007	A	G	SNP	SLC24A3	ENST00000328041	human	ensembl	74_37	+1	known	missense	c.1429	p.M477V	0.992	tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A3	HGNC	ENSG00000185052				137	0	0	33	23	41.0714
GZF1	0	genome.wustl.edu	37	20	23346365	23346365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	23346365	23346365	G	A	SNP	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	missense	c.1345	p.A449T	0.966	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				35	0	0	8	10	55.5556
GZF1	0	genome.wustl.edu	37	20	23346366	23346366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	23346366	23346366	C	T	SNP	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	missense	c.1346	p.A449V	0.967	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				35	0	0	13	4	23.5294
ZNF337	0	genome.wustl.edu	37	20	25655896	25655896	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	25655896	25655896	C	A	SNP	ZNF337	ENST00000252979	human	ensembl	74_37	-1	known	missense	c.2028	p.W676C	0.077	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF337	HGNC	ENSG00000130684				134	0	0	74	42	36.2069
BPIFB4	0	genome.wustl.edu	37	20	31671663	31671663	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	31671663	31671663	T	C	SNP	BPIFB4	ENST00000375483	human	ensembl	74_37	+1	known	silent	c.660	p.T220	0.984	pfam_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191				141	0	0	44	5	10.2041
CPNE1	0	genome.wustl.edu	37	20	34218844	34218844	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	34218844	34218844	C	T	SNP	CPNE1	ENST00000317677	human	ensembl	74_37	-1	known	missense	c.989	p.S330N	0.920	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE1	HGNC	ENSG00000214078				235	0	0	69	23	25
DLGAP4	0	genome.wustl.edu	37	20	35064650	35064650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	35064650	35064650	G	A	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.1138	p.E380K	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				46	0	0	15	6	28.5714
ACTR5	0	genome.wustl.edu	37	20	37396225	37396225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	37396225	37396225	C	T	SNP	ACTR5	ENST00000243903	human	ensembl	74_37	+1	known	missense	c.1552	p.R518W	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR5	HGNC	ENSG00000101442				120	0	0	52	28	35
LPIN3	0	genome.wustl.edu	37	20	39976275	39976275	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	39976275	39976275	G	A	SNP	LPIN3	ENST00000373257	human	ensembl	74_37	+1	known	silent	c.276	p.L92	0.992	pfam_Lipin_N	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793				79	0	0	16	7	30.4348
KCNK15	0	genome.wustl.edu	37	20	43379180	43379180	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	43379180	43379180	C	A	SNP	KCNK15	ENST00000372861	human	ensembl	74_37	+1	known	missense	c.694	p.L232I	1.000	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_TASK5,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl	-	no_errors	KCNK15	HGNC	ENSG00000124249				156	0	0	48	22	31.4286
KCNS1	0	genome.wustl.edu	37	20	43723770	43723770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	43723770	43723770	C	T	SNP	KCNS1	ENST00000306117	human	ensembl	74_37	-1	known	missense	c.1322	p.C441Y	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNS1	HGNC	ENSG00000124134				115	0	0	54	23	29.8701
SPATA25	0	genome.wustl.edu	37	20	44515176	44515176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	44515176	44515176	G	A	SNP	SPATA25	ENST00000372519	human	ensembl	74_37	-1	known	missense	c.664	p.P222S	1.000	NULL	NULL	-	no_errors	SPATA25	HGNC	ENSG00000149634				462	0	0	133	54	28.877
PCIF1	0	genome.wustl.edu	37	20	44569534	44569534	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	44569534	44569534	G	A	SNP	PCIF1	ENST00000372409	human	ensembl	74_37	+1	known	silent	c.474	p.T158	0.668	NULL	pfam_PCIF1_WW,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	PCIF1	HGNC	ENSG00000100982				184	0	0	80	7	8.04598
NCOA5	0	genome.wustl.edu	37	20	44691344	44691344	+	Silent	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	44691344	44691344	C	A	SNP	NCOA5	ENST00000290231	human	ensembl	74_37	-1	known	silent	c.1335	p.T445	0.984	NULL	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160				341	0	0	110	31	21.9858
NCOA3	0	genome.wustl.edu	37	20	46265284	46265284	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	46265284	46265284	C	T	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	silent	c.2154	p.D718	0.237	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				137	1	0.724638	50	31	38.2716
MOCS3	0	genome.wustl.edu	37	20	49576279	49576279	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	49576279	49576279	C	T	SNP	MOCS3	ENST00000244051	human	ensembl	74_37	+1	known	silent	c.900	p.C300	0.791	pfam_MoeZ_MoeB,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_MoeZ_MoeB,pfam_Rhodanese-like_dom,superfamily_Molybdenum_cofac_synth_MoeB,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	MOCS3	HGNC	ENSG00000124217				153	0	0	55	29	34.5238
TSHZ2	0	genome.wustl.edu	37	20	51870903	51870903	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	51870903	51870903	A	C	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.906	p.K302N	1.000	pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				130	0	0	39	30	43.4783
MC3R	0	genome.wustl.edu	37	20	54824313	54824313	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	54824313	54824313	C	T	SNP	MC3R	ENST00000243911	human	ensembl	74_37	+1	known	silent	c.414	p.I138	0.925	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_3_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC3R	HGNC	ENSG00000124089				138	0	0	48	43	47.2527
LRRN4	0	genome.wustl.edu	37	20	6022103	6022103	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	6022103	6022103	C	T	SNP	LRRN4	ENST00000378858	human	ensembl	74_37	-1	known	silent	c.1788	p.A596	0.004	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4	HGNC	ENSG00000125872				163	0	0	39	18	31.5789
CDH4	0	genome.wustl.edu	37	20	60508125	60508125	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	60508125	60508125	C	T	SNP	CDH4	ENST00000360469	human	ensembl	74_37	+1	known	silent	c.2322	p.D774	1.000	pfam_Cadherin_cytoplasmic-dom,prints_Cadherin/Desmocollin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242				173	0	0	35	15	30
FERMT1	0	genome.wustl.edu	37	20	6075585	6075585	+	Splice_Site	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	6075585	6075585	C	G	SNP	FERMT1	ENST00000217289	human	ensembl	74_37	-1	known	splice_site	c.1139+1	e8+1	1.000	-	-	-	no_errors	FERMT1	HGNC	ENSG00000101311				135	0	0	52	25	32.4675
BIRC7	0	genome.wustl.edu	37	20	61870935	61870935	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	61870935	61870935	G	C	SNP	BIRC7	ENST00000217169	human	ensembl	74_37	+1	known	missense	c.875	p.R292P	0.841	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC7	HGNC	ENSG00000101197				41	0	0	15	7	31.8182
KCNQ2	0	genome.wustl.edu	37	20	62044868	62044868	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	62044868	62044868	G	A	SNP	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	silent	c.1614	p.D538	0.880	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043				285	0	0	55	43	43.8776
PAK7	0	genome.wustl.edu	37	20	9546559	9546559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	9546559	9546559	C	T	SNP	PAK7	ENST00000353224	human	ensembl	74_37	-1	known	missense	c.1463	p.R488Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK7	HGNC	ENSG00000101349				293	0	0	144	87	37.6623
NCAM2	0	genome.wustl.edu	37	21	22838932	22838932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	22838932	22838932	G	A	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	missense	c.1660	p.V554I	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				16	0	0	9	8	47.0588
ADAMTS5	0	genome.wustl.edu	37	21	28315748	28315748	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	28315748	28315748	C	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	nonsense	c.1356	p.W452*	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				50	0	0	15	10	40
ADAMTS5	0	genome.wustl.edu	37	21	28337871	28337871	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	28337871	28337871	C	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	silent	c.840	p.A280	0.968	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				32	0	0	19	4	17.3913
N6AMT1	0	genome.wustl.edu	37	21	30250634	30250634	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	30250634	30250634	C	G	SNP	N6AMT1	ENST00000303775	human	ensembl	74_37	-1	known	missense	c.418	p.A140P	1.000	pfam_Small_mtfrase_dom,tigrfam_PrmC_related	pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,tigrfam_PrmC_related	-	no_errors	N6AMT1	HGNC	ENSG00000156239				198	0	0	103	21	16.9355
KRTAP19-1	0	genome.wustl.edu	37	21	31852451	31852451	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	31852451	31852451	G	A	SNP	KRTAP19-1	ENST00000390689	human	ensembl	74_37	-1	known	silent	c.186	p.Y62	0.018	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP19-1	HGNC	ENSG00000184351				759	1	0.131579	171	62	26.6094
C21orf62	0	genome.wustl.edu	37	21	34166443	34166443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	34166443	34166443	G	A	SNP	C21orf62	ENST00000479548	human	ensembl	74_37	-1	known	missense	c.290	p.T97M	0.995	NULL	NULL	-	no_errors	C21orf62	HGNC	ENSG00000205929				107	1	0.925926	30	23	43.3962
OLIG2	0	genome.wustl.edu	37	21	34399327	34399327	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	34399327	34399327	G	A	SNP	OLIG2	ENST00000333337	human	ensembl	74_37	+1	known	missense	c.157	p.A53T	0.178	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	OLIG2	HGNC	ENSG00000205927				34	0	0	10	3	23.0769
ERG	0	genome.wustl.edu	37	21	39795450	39795450	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	39795450	39795450	G	A	SNP	ERG	ENST00000398919	human	ensembl	74_37	-1	known	silent	c.291	p.G97	0.982	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERG	HGNC	ENSG00000157554				100	0	0	23	23	50
MX2	0	genome.wustl.edu	37	21	42771150	42771150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	42771150	42771150	G	A	SNP	MX2	ENST00000330714	human	ensembl	74_37	+1	known	missense	c.1300	p.E434K	0.001	pfam_Dynamin_central,superfamily_P-loop_NTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_P-loop_NTPase,superfamily_CH-domain,smart_Dynamin_GTPase,smart_GED,prints_Dynamin_SF	-	no_errors	MX2	HGNC	ENSG00000183486				171	0	0	43	39	47.561
ABCG1	0	genome.wustl.edu	37	21	43708071	43708071	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	43708071	43708071	G	A	SNP	ABCG1	ENST00000398437	human	ensembl	74_37	+1	known	missense	c.1484	p.C495Y	1.000	tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179				442	0	0	88	50	36.2319
U2AF1	0	genome.wustl.edu	37	21	44520688	44520688	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	44520688	44520688	G	A	SNP	U2AF1	ENST00000486519	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	U2AF1	HGNC	ENSG00000160201				47	0	0	22	8	26.6667
TRPM2	0	genome.wustl.edu	37	21	45789117	45789117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	45789117	45789117	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	missense	c.662	p.A221V	0.998	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				47	0	0	13	3	18.75
TRPM2	0	genome.wustl.edu	37	21	45859042	45859042	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	45859042	45859042	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	silent	c.4260	p.C1420	0.024	superfamily_NUDIX_hydrolase_dom-like	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				105	0	0	21	6	22.2222
LRRC3	0	genome.wustl.edu	37	21	45876981	45876981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	45876981	45876981	G	A	SNP	LRRC3	ENST00000291592	human	ensembl	74_37	+1	known	missense	c.454	p.A152T	0.936	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC3	HGNC	ENSG00000160233				105	0	0	26	10	27.7778
TSPEAR	0	genome.wustl.edu	37	21	45953801	45953801	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	45953801	45953801	G	A	SNP	TSPEAR	ENST00000323084	human	ensembl	74_37	-1	known	silent	c.309	p.N103	0.996	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EPTP,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_EAR	-	no_errors	TSPEAR	HGNC	ENSG00000175894				53	0	0	11	5	31.25
COL6A2	0	genome.wustl.edu	37	21	47546124	47546124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	47546124	47546124	G	A	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	missense	c.2395	p.D799N	0.999	smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				642	0	0	101	72	41.6185
CECR5	0	genome.wustl.edu	37	22	17622001	17622001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	17622001	17622001	C	T	SNP	CECR5	ENST00000336737	human	ensembl	74_37	-1	known	missense	c.694	p.V232I	0.924	superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_CECR5,tigrfam_HAD-SF_hydro_IIA	superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_CECR5,tigrfam_HAD-SF_hydro_IIA	-	no_errors	CECR5	HGNC	ENSG00000069998				118	0	0	24	13	35.1351
ARVCF	0	genome.wustl.edu	37	22	19967640	19967640	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	19967640	19967640	C	T	SNP	ARVCF	ENST00000263207	human	ensembl	74_37	-1	known	missense	c.1022	p.R341Q	0.974	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889				31	0	0	9	6	40
DGCR8	0	genome.wustl.edu	37	22	20073637	20073637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	20073637	20073637	G	A	SNP	DGCR8	ENST00000351989	human	ensembl	74_37	+1	known	missense	c.151	p.V51I	1.000	NULL	pfam_dsRNA-bd_dom,superfamily_WW_dom,smart_WW_dom,smart_dsRNA-bd_dom,pfscan_WW_dom,pfscan_dsRNA-bd_dom	-	no_errors	DGCR8	HGNC	ENSG00000128191				151	0	0	52	23	30.6667
PPM1F	0	genome.wustl.edu	37	22	22277735	22277735	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	22277735	22277735	G	A	SNP	PPM1F	ENST00000263212	human	ensembl	74_37	-1	known	silent	c.1095	p.V365	0.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1F	HGNC	ENSG00000100034				110	0	0	30	19	38.7755
BMS1P20	0	genome.wustl.edu	37	22	22664216	22664216	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	22664216	22664216	G	A	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				119	1	0.833333	62	8	11.4286
ZNF280B	0	genome.wustl.edu	37	22	22842147	22842147	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	22842147	22842147	T	A	SNP	ZNF280B	ENST00000360412	human	ensembl	74_37	-1	known	missense	c.1577	p.D526V	0.066	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280B	HGNC	ENSG00000198477				191	0	0	127	16	11.1888
ZNF280A	0	genome.wustl.edu	37	22	22868482	22868482	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	22868482	22868482	T	G	SNP	ZNF280A	ENST00000302097	human	ensembl	74_37	-1	known	missense	c.1473	p.K491N	0.947	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280A	HGNC	ENSG00000169548				158	0	0	130	15	10.3448
MMP11	0	genome.wustl.edu	37	22	24122768	24122768	+	Splice_Site	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	24122768	24122768	G	T	SNP	MMP11	ENST00000215743	human	ensembl	74_37	+1	known	splice_site	c.483-1	e4-1	1.000	-	-	-	no_errors	MMP11	HGNC	ENSG00000099953				85	0	0	25	20	44.4444
SMARCB1	0	genome.wustl.edu	37	22	24176339	24176339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	24176339	24176339	G	A	SNP	SMARCB1	ENST00000263121	human	ensembl	74_37	+1	known	missense	c.1130	p.R377H	1.000	pirsf_SWI_SNF_chromatin_remodel_cplx	pfam_SNF5,pirsf_SWI_SNF_chromatin_remodel_cplx	-	no_errors	SMARCB1	HGNC	ENSG00000099956				20	0	0	8	5	38.4615
SUSD2	0	genome.wustl.edu	37	22	24584295	24584295	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	24584295	24584295	C	T	SNP	SUSD2	ENST00000358321	human	ensembl	74_37	+1	known	missense	c.2444	p.T815M	0.101	NULL	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Sushi_SCR_CCP,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994				90	0	0	31	21	40.3846
SPECC1L	0	genome.wustl.edu	37	22	24730508	24730508	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	24730508	24730508	A	G	SNP	SPECC1L	ENST00000314328	human	ensembl	74_37	+1	known	missense	c.2527	p.T843A	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_bHLH_dom,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1L	HGNC	ENSG00000100014				194	0	0	91	14	13.3333
CCDC157	0	genome.wustl.edu	37	22	30762085	30762085	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	30762085	30762085	C	T	SNP	CCDC157	ENST00000338306	human	ensembl	74_37	+1	known	silent	c.96	p.A32	0.135	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC157	HGNC	ENSG00000187860				170	0	0	48	23	32.3944
SEC14L2	0	genome.wustl.edu	37	22	30812384	30812384	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	30812384	30812384	C	A	SNP	SEC14L2	ENST00000312932	human	ensembl	74_37	+1	known	missense	c.1073	p.P358H	1.000	superfamily_GOLD,pfscan_GOLD	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L2	HGNC	ENSG00000100003				123	0	0	43	19	30.6452
PES1	0	genome.wustl.edu	37	22	30980667	30980667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	30980667	30980667	C	T	SNP	PES1	ENST00000354694	human	ensembl	74_37	-1	known	missense	c.406	p.D136N	1.000	pfam_Pescadillo	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029				82	0	0	18	3	14.2857
SLC35E4	0	genome.wustl.edu	37	22	31032910	31032910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	31032910	31032910	G	A	SNP	SLC35E4	ENST00000343605	human	ensembl	74_37	+1	known	missense	c.473	p.R158H	1.000	pfam_DMT,pfam_UAA	pfam_Tpt_PEP_trans_dom,pfam_DMT,pfam_UAA	-	no_errors	SLC35E4	HGNC	ENSG00000100036				44	0	0	16	9	36
MYH9	0	genome.wustl.edu	37	22	36680233	36680233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	36680233	36680233	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.5671	p.A1891T	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				112	0	0	26	16	38.0952
RAC2	0	genome.wustl.edu	37	22	37637151	37637151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	37637151	37637151	C	T	SNP	RAC2	ENST00000401529	human	ensembl	74_37	-1	putative	missense	c.163	p.V55M	0.000	smart_Small_GTPase_Rho	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Rho	-	no_errors	RAC2	HGNC	ENSG00000128340				37	0	0	8	7	46.6667
NPTXR	0	genome.wustl.edu	37	22	39224460	39224460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	39224460	39224460	G	A	SNP	NPTXR	ENST00000333039	human	ensembl	74_37	-1	known	missense	c.682	p.P228S	0.809	NULL	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTXR	HGNC	ENSG00000221890				40	0	0	7	4	36.3636
APOBEC3H	0	genome.wustl.edu	37	22	39498015	39498015	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	39498015	39498015	C	G	SNP	APOBEC3H	ENST00000442487	human	ensembl	74_37	+1	known	missense	c.511	p.R171G	0.000	pfam_APOBEC_C	pfam_APOBEC_N,pfam_APOBEC_C,pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3H	HGNC	ENSG00000100298				123	1	0.806452	31	10	24.3902
CACNA1I	0	genome.wustl.edu	37	22	40057993	40057993	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	40057993	40057993	C	T	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	silent	c.2943	p.Y981	0.758	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				20	0	0	4	2	33.3333
FAM83F	0	genome.wustl.edu	37	22	40417883	40417883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	40417883	40417883	G	A	SNP	FAM83F	ENST00000333407	human	ensembl	74_37	+1	known	missense	c.1369	p.A457T	0.183	NULL	pfam_DUF1669	-	no_errors	FAM83F	HGNC	ENSG00000133477				100	1	0.990099	44	14	24.1379
ACO2	0	genome.wustl.edu	37	22	41918966	41918966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	41918966	41918966	G	A	SNP	ACO2	ENST00000216254	human	ensembl	74_37	+1	known	missense	c.1271	p.R424H	0.999	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412				185	0	0	51	31	37.8049
TCF20	0	genome.wustl.edu	37	22	42609415	42609415	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	42609415	42609415	C	T	SNP	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	missense	c.1897	p.A633T	0.014	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				125	0	0	66	35	34.6535
TCF20	0	genome.wustl.edu	37	22	42611137	42611137	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	42611137	42611137	G	A	SNP	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	nonsense	c.175	p.R59*	0.998	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				49	0	0	23	14	37.8378
RRP7B	0	genome.wustl.edu	37	22	42972598	42972598	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	42972598	42972598	C	T	SNP	RRP7B	ENST00000357802	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RRP7B	HGNC	ENSG00000182841				24	0	0	4	4	50
SMC1B	0	genome.wustl.edu	37	22	45779402	45779402	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	45779402	45779402	T	G	SNP	SMC1B	ENST00000357450	human	ensembl	74_37	-1	known	missense	c.2003	p.E668A	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_SMC_hinge	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935				98	0	0	76	15	16.4835
CELSR1	0	genome.wustl.edu	37	22	46931661	46931661	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	46931661	46931661	G	A	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	silent	c.1407	p.P469	0.543	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				108	0	0	25	13	34.2105
TUBGCP6	0	genome.wustl.edu	37	22	50660293	50660293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	50660293	50660293	G	A	SNP	TUBGCP6	ENST00000248846	human	ensembl	74_37	-1	known	missense	c.2495	p.P832L	0.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP6	HGNC	ENSG00000128159				106	0	0	18	11	37.931
MAPK8IP2	0	genome.wustl.edu	37	22	51043425	51043425	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	51043425	51043425	C	A	SNP	MAPK8IP2	ENST00000329492	human	ensembl	74_37	+1	known	missense	c.1695	p.D565E	1.000	superfamily_SH3_domain	pfam_PTB/PI_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP2	HGNC	ENSG00000008735				159	0	0	35	11	23.913
DZIP3	0	genome.wustl.edu	37	3	108409687	108409687	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	108409687	108409687	C	T	SNP	DZIP3	ENST00000361582	human	ensembl	74_37	+1	known	silent	c.3570	p.H1190	0.976	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919				131	1	0.757576	56	29	34.1176
DPPA2	0	genome.wustl.edu	37	3	109027898	109027898	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	109027898	109027898	C	A	SNP	DPPA2	ENST00000478945	human	ensembl	74_37	-1	known	missense	c.371	p.R124M	0.001	pfscan_SAP_dom	pfscan_SAP_dom	-	no_errors	DPPA2	HGNC	ENSG00000163530				245	0	0	85	50	37.037
ATG7	0	genome.wustl.edu	37	3	11383709	11383709	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	11383709	11383709	C	A	SNP	ATG7	ENST00000354449	human	ensembl	74_37	+1	known	missense	c.1081	p.L361I	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	-	no_errors	ATG7	HGNC	ENSG00000197548				243	0	0	105	53	33.5443
MAATS1	0	genome.wustl.edu	37	3	119462963	119462963	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	119462963	119462963	C	T	SNP	MAATS1	ENST00000273390	human	ensembl	74_37	+1	known	missense	c.1822	p.R608W	0.968	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	MAATS1	HGNC	ENSG00000183833				162	0	0	48	27	36
PLXNA1	0	genome.wustl.edu	37	3	126724052	126724052	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	126724052	126724052	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.1863	p.S621	0.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				31	0	0	12	5	29.4118
PLXNA1	0	genome.wustl.edu	37	3	126733355	126733355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	126733355	126733355	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.2639	p.T880M	0.995	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				82	0	0	14	17	54.8387
ABTB1	0	genome.wustl.edu	37	3	127399132	127399132	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	127399132	127399132	C	T	SNP	ABTB1	ENST00000232744	human	ensembl	74_37	+1	known	silent	c.1251	p.F417	0.154	NULL	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB1	HGNC	ENSG00000114626				27	0	0	23	8	25.8065
MBD4	0	genome.wustl.edu	37	3	129156137	129156137	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	129156137	129156137	T	G	SNP	MBD4	ENST00000249910	human	ensembl	74_37	-1	known	missense	c.350	p.K117T	0.996	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MBD4,pfscan_Methyl_CpG_DNA-bd	pfam_Methyl_CpG_DNA-bd,pfam_HhH-GPD_domain,superfamily_DNA-bd_dom,superfamily_DNA_glycosylase,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MBD4,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD4	HGNC	ENSG00000129071				71	0	0	31	29	48.3333
NEK11	0	genome.wustl.edu	37	3	130947466	130947466	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	130947466	130947466	G	A	SNP	NEK11	ENST00000383366	human	ensembl	74_37	+1	known	silent	c.1494	p.A498	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK11	HGNC	ENSG00000114670				130	1	0.763359	67	25	27.1739
DNAJC13	0	genome.wustl.edu	37	3	132193825	132193825	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	132193825	132193825	C	T	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	nonsense	c.2341	p.R781*	1.000	superfamily_ARM-type_fold	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				178	0	0	59	21	26.25
DNAJC13	0	genome.wustl.edu	37	3	132211259	132211259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	132211259	132211259	C	T	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.3625	p.R1209C	1.000	superfamily_ARM-type_fold	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				361	0	0	197	105	34.7682
AMOTL2	0	genome.wustl.edu	37	3	134090119	134090119	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	134090119	134090119	C	A	SNP	AMOTL2	ENST00000249883	human	ensembl	74_37	-1	known	missense	c.157	p.A53S	0.915	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL2	HGNC	ENSG00000114019				72	0	0	18	10	35.7143
HDAC11	0	genome.wustl.edu	37	3	13544421	13544421	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	13544421	13544421	G	A	SNP	HDAC11	ENST00000295757	human	ensembl	74_37	+1	known	missense	c.590	p.R197H	0.998	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC11	HGNC	ENSG00000163517				434	0	0	139	68	32.8502
PPP2R3A	0	genome.wustl.edu	37	3	135721303	135721303	+	Silent	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	135721303	135721303	C	A	SNP	PPP2R3A	ENST00000264977	human	ensembl	74_37	+1	known	silent	c.963	p.P321	0.873	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3A	HGNC	ENSG00000073711				153	0	0	60	43	41.7476
FBLN2	0	genome.wustl.edu	37	3	13670507	13670507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	13670507	13670507	C	T	SNP	FBLN2	ENST00000404922	human	ensembl	74_37	+1	known	missense	c.2672	p.A891V	0.051	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_EG-like_dom,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd_dom,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520				57	0	0	10	6	37.5
COPB2	0	genome.wustl.edu	37	3	139077962	139077962	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	139077962	139077962	G	T	SNP	COPB2	ENST00000333188	human	ensembl	74_37	-1	known	missense	c.2362	p.L788I	1.000	pirsf_COPB2	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432				133	0	0	76	50	39.6825
COPB2	0	genome.wustl.edu	37	3	139090584	139090584	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	139090584	139090584	A	G	SNP	COPB2	ENST00000333188	human	ensembl	74_37	-1	known	missense	c.1186	p.W396R	1.000	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,superfamily_WD40_repeat_dom	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432				129	0	0	47	25	34.7222
CNTN6	0	genome.wustl.edu	37	3	1394070	1394070	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	1394070	1394070	C	A	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	nonsense	c.1427	p.S476*	0.005	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				82	0	0	37	20	35.0877
CHCHD4	0	genome.wustl.edu	37	3	14154633	14154633	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	14154633	14154633	G	A	SNP	CHCHD4	ENST00000295767	human	ensembl	74_37	-1	known	silent	c.222	p.S74	0.897	NULL	pfam_CHCH	-	no_errors	CHCHD4	HGNC	ENSG00000163528				136	1	0.729927	55	19	25.6757
CNTN6	0	genome.wustl.edu	37	3	1445015	1445015	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	1445015	1445015	A	G	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	silent	c.3000	p.R1000	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				62	0	0	17	15	46.875
GRIP2	0	genome.wustl.edu	37	3	14555174	14555174	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	14555174	14555174	C	T	SNP	GRIP2	ENST00000273083	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.955	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596				33	0	0	9	3	25
C3orf20	0	genome.wustl.edu	37	3	14724408	14724408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	14724408	14724408	C	T	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	missense	c.188	p.P63L	0.004	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				232	0	0	92	34	26.9841
SUCNR1	0	genome.wustl.edu	37	3	151599161	151599161	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	151599161	151599161	A	G	SNP	SUCNR1	ENST00000362032	human	ensembl	74_37	+1	known	missense	c.830	p.Y277C	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	SUCNR1	HGNC	ENSG00000198829				207	0	0	120	35	22.5806
BTD	0	genome.wustl.edu	37	3	15686554	15686554	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	15686554	15686554	G	A	SNP	BTD	ENST00000303498	human	ensembl	74_37	+1	known	silent	c.1191	p.E397	0.997	pirsf_Biotinidase_euk	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	BTD	HGNC	ENSG00000169814				280	0	0	117	44	27.3292
LRRC31	0	genome.wustl.edu	37	3	169572614	169572614	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	169572614	169572614	G	A	SNP	LRRC31	ENST00000316428	human	ensembl	74_37	-1	known	silent	c.978	p.D326	0.402	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC31	HGNC	ENSG00000114248				155	0	0	65	37	36.2745
NLGN1	0	genome.wustl.edu	37	3	173999004	173999004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	173999004	173999004	C	T	SNP	NLGN1	ENST00000401917	human	ensembl	74_37	+1	known	missense	c.2503	p.H835Y	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760				90	0	0	37	18	32.7273
RTP2	0	genome.wustl.edu	37	3	187416627	187416627	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	187416627	187416627	T	A	SNP	RTP2	ENST00000358241	human	ensembl	74_37	-1	known	missense	c.337	p.N113Y	1.000	NULL	NULL	-	no_errors	RTP2	HGNC	ENSG00000198471				41	0	0	16	9	36
UTS2B	0	genome.wustl.edu	37	3	191047402	191047402	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	191047402	191047402	G	A	SNP	UTS2B	ENST00000490825	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	UTS2B	HGNC	ENSG00000188958				17	0	0	6	2	25
DLG1	0	genome.wustl.edu	37	3	196817823	196817823	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	196817823	196817823	C	A	SNP	DLG1	ENST00000346964	human	ensembl	74_37	-1	known	missense	c.1720	p.G574C	0.997	superfamily_SH3_domain,pirsf_M-assoc_guanylate_kinase	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG1	HGNC	ENSG00000075711				150	0	0	78	18	18.75
KIAA0226	0	genome.wustl.edu	37	3	197408185	197408185	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	197408185	197408185	A	C	SNP	KIAA0226	ENST00000296343	human	ensembl	74_37	-1	known	missense	c.2245	p.C749G	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	KIAA0226	HGNC	ENSG00000145016				199	0	0	70	41	36.9369
THRB	0	genome.wustl.edu	37	3	24231679	24231679	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	24231679	24231679	G	A	SNP	THRB	ENST00000356447	human	ensembl	74_37	-1	known	missense	c.169	p.H57Y	0.864	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRB	HGNC	ENSG00000151090				134	0	0	110	9	7.56303
NEK10	0	genome.wustl.edu	37	3	27216220	27216220	+	Silent	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	27216220	27216220	G	T	SNP	NEK10	ENST00000383771	human	ensembl	74_37	-1	known	silent	c.546	p.A182	0.013	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK10	HGNC	ENSG00000163491				246	0	0	128	15	10.4895
FBXL2	0	genome.wustl.edu	37	3	33416811	33416811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	33416811	33416811	G	A	SNP	FBXL2	ENST00000484457	human	ensembl	74_37	+1	known	missense	c.689	p.C230Y	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL2	HGNC	ENSG00000153558				174	0	0	61	25	29.0698
CLASP2	0	genome.wustl.edu	37	3	33633950	33633950	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	33633950	33633950	T	C	SNP	CLASP2	ENST00000399362	human	ensembl	74_37	-1	known	missense	c.2005	p.M669V	0.968	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539				60	0	0	25	12	32.4324
PLCD1	0	genome.wustl.edu	37	3	38049968	38049968	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	38049968	38049968	C	T	SNP	PLCD1	ENST00000463876	human	ensembl	74_37	-1	known	missense	c.1946	p.R649Q	0.000	superfamily_C2_dom,pfscan_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD1	HGNC	ENSG00000187091				103	0	0	27	18	40
SLC22A13	0	genome.wustl.edu	37	3	38318562	38318562	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	38318562	38318562	G	A	SNP	SLC22A13	ENST00000311856	human	ensembl	74_37	+1	known	silent	c.1506	p.T502	0.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A13	HGNC	ENSG00000172940				19	0	0	2	4	66.6667
ACVR2B	0	genome.wustl.edu	37	3	38518857	38518857	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	38518857	38518857	C	T	SNP	ACVR2B	ENST00000352511	human	ensembl	74_37	+1	known	silent	c.132	p.S44	1.000	pfam_Activin_rcpt	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2B	HGNC	ENSG00000114739				146	1	0.680272	37	12	24.4898
SCN10A	0	genome.wustl.edu	37	3	38755487	38755487	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	38755487	38755487	G	A	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.3766	p.R1256W	0.982	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				235	0	0	85	8	8.60215
LRRN1	0	genome.wustl.edu	37	3	3887633	3887633	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	3887633	3887633	C	T	SNP	LRRN1	ENST00000319331	human	ensembl	74_37	+1	known	silent	c.1308	p.N436	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN1	HGNC	ENSG00000175928				157	0	0	71	37	34.2593
ENTPD3	0	genome.wustl.edu	37	3	40442404	40442404	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	40442404	40442404	C	T	SNP	ENTPD3	ENST00000301825	human	ensembl	74_37	+1	known	missense	c.188	p.A63V	0.999	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD3	HGNC	ENSG00000168032				324	0	0	105	47	30.9211
CTNNB1	0	genome.wustl.edu	37	3	41278119	41278119	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	41278119	41278119	C	A	SNP	CTNNB1	ENST00000349496	human	ensembl	74_37	+1	known	missense	c.1995	p.D665E	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	CTNNB1	HGNC	ENSG00000168036				235	1	0.423729	123	24	16.3265
ZNF445	0	genome.wustl.edu	37	3	44497024	44497024	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	44497024	44497024	C	T	SNP	ZNF445	ENST00000396077	human	ensembl	74_37	-1	known	nonsense	c.18	p.W6*	0.612	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219				77	0	0	23	17	42.5
KIF15	0	genome.wustl.edu	37	3	44893719	44893719	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	44893719	44893719	A	C	SNP	KIF15	ENST00000326047	human	ensembl	74_37	+1	known	missense	c.3992	p.K1331T	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808				75	0	0	36	19	34.5455
CDCP1	0	genome.wustl.edu	37	3	45137008	45137008	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	45137008	45137008	G	A	SNP	CDCP1	ENST00000296129	human	ensembl	74_37	-1	known	silent	c.1077	p.I359	0.294	NULL	superfamily_CUB_dom	-	no_errors	CDCP1	HGNC	ENSG00000163814				114	0	0	23	28	54.902
COL7A1	0	genome.wustl.edu	37	3	48608092	48608092	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	48608092	48608092	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.7324	p.P2442S	0.984	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				24	0	0	10	2	16.6667
LAMB2	0	genome.wustl.edu	37	3	49161216	49161216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	49161216	49161216	G	A	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	missense	c.3742	p.R1248C	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				119	0	0	35	23	39.6552
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				287	0	0	65	49	42.9825
UBA7	0	genome.wustl.edu	37	3	49847737	49847737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	49847737	49847737	C	T	SNP	UBA7	ENST00000333486	human	ensembl	74_37	-1	known	missense	c.1592	p.R531H	0.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179				173	0	0	62	23	27.0588
UBA7	0	genome.wustl.edu	37	3	49850585	49850585	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	49850585	49850585	G	A	SNP	UBA7	ENST00000333486	human	ensembl	74_37	-1	known	missense	c.377	p.A126V	0.020	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179				67	0	0	13	16	55.1724
GNAT1	0	genome.wustl.edu	37	3	50231007	50231007	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	50231007	50231007	G	A	SNP	GNAT1	ENST00000232461	human	ensembl	74_37	+1	known	silent	c.360	p.S120	0.359	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT1	HGNC	ENSG00000114349				133	0	0	22	10	31.25
LSMEM2	0	genome.wustl.edu	37	3	50324510	50324510	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	50324510	50324510	T	C	SNP	LSMEM2	ENST00000316436	human	ensembl	74_37	+1	known	silent	c.372	p.S124	0.926	NULL	NULL	-	no_errors	LSMEM2	HGNC	ENSG00000179564				100	0	0	25	12	32.4324
HYAL1	0	genome.wustl.edu	37	3	50340261	50340261	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	50340261	50340261	A	G	SNP	HYAL1	ENST00000266031	human	ensembl	74_37	-1	known	missense	c.127	p.C43R	1.000	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL1	HGNC	ENSG00000114378				135	0	0	27	27	50
TEX264	0	genome.wustl.edu	37	3	51718329	51718329	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	51718329	51718329	C	T	SNP	TEX264	ENST00000463857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TEX264	HGNC	ENSG00000164081				16	0	0	4	4	50
NEK4	0	genome.wustl.edu	37	3	52786314	52786314	+	Silent	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	52786314	52786314	G	T	SNP	NEK4	ENST00000233027	human	ensembl	74_37	-1	known	silent	c.1002	p.A334	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK4	HGNC	ENSG00000114904				234	0	0	169	23	11.9792
ARHGEF3	0	genome.wustl.edu	37	3	56789110	56789110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	56789110	56789110	C	T	SNP	ARHGEF3	ENST00000338458	human	ensembl	74_37	-1	known	missense	c.370	p.A124T	0.002	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF3	HGNC	ENSG00000163947				357	0	0	126	33	20.7547
FLNB	0	genome.wustl.edu	37	3	58141774	58141774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	58141774	58141774	C	T	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	missense	c.6860	p.A2287V	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				108	0	0	31	16	34.0426
GPR27	0	genome.wustl.edu	37	3	71803351	71803351	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	71803351	71803351	C	A	SNP	GPR27	ENST00000304411	human	ensembl	74_37	+1	known	missense	c.151	p.R51S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR27	HGNC	ENSG00000170837				63	0	0	11	6	35.2941
FAM86DP	0	genome.wustl.edu	37	3	75472209	75472209	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	75472209	75472209	C	T	SNP	FAM86DP	ENST00000459803	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	FAM86DP	HGNC	ENSG00000244026				104	0	0	37	3	7.5
CRYBG3	0	genome.wustl.edu	37	3	97611821	97611821	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	97611821	97611821	C	T	SNP	CRYBG3	ENST00000182096	human	ensembl	74_37	+1	known	missense	c.1714	p.R572C	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200				134	0	0	52	37	41.573
FGFRL1	0	genome.wustl.edu	37	4	1016196	1016196	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	1016196	1016196	C	T	SNP	FGFRL1	ENST00000264748	human	ensembl	74_37	+1	known	silent	c.285	p.G95	0.017	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FGFRL1	HGNC	ENSG00000127418				49	0	0	15	3	16.6667
ADAD1	0	genome.wustl.edu	37	4	123302332	123302332	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	123302332	123302332	A	G	SNP	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	missense	c.358	p.T120A	1.000	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113				158	0	0	60	16	21.0526
HHIP	0	genome.wustl.edu	37	4	145629414	145629414	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	145629414	145629414	A	G	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	missense	c.1252	p.T418A	1.000	superfamily_Quinoprot_gluc/sorb_DH	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161				104	0	0	41	20	32.7869
CPEB2	0	genome.wustl.edu	37	4	15067820	15067820	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	15067820	15067820	A	G	SNP	CPEB2	ENST00000538197	human	ensembl	74_37	+1	known	missense	c.2921	p.E974G	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449				195	0	0	114	18	13.6364
DCHS2	0	genome.wustl.edu	37	4	155243618	155243618	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	155243618	155243618	C	A	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.2676	p.K892N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				49	0	0	30	12	28.5714
FNIP2	0	genome.wustl.edu	37	4	159756589	159756589	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	159756589	159756589	G	T	SNP	FNIP2	ENST00000379346	human	ensembl	74_37	+1	known	nonsense	c.757	p.G253*	1.000	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795				395	0	0	122	52	29.8851
MSMO1	0	genome.wustl.edu	37	4	166254715	166254715	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	166254715	166254715	T	C	SNP	MSMO1	ENST00000261507	human	ensembl	74_37	+1	known	missense	c.193	p.F65L	0.953	NULL	pfam_Fatty_acid_hydroxylase	-	no_errors	MSMO1	HGNC	ENSG00000052802				62	0	0	38	21	35.5932
TENM3	0	genome.wustl.edu	37	4	183714323	183714323	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	183714323	183714323	C	A	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.6498	p.N2166K	1.000	superfamily_Cyt_c-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				278	1	0.358423	89	46	34.0741
WHSC1	0	genome.wustl.edu	37	4	1980430	1980430	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	1980430	1980430	C	A	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	missense	c.3892	p.L1298I	0.946	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				97	0	0	37	18	32.7273
GRK4	0	genome.wustl.edu	37	4	3042365	3042365	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	3042365	3042365	G	A	SNP	GRK4	ENST00000505271	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	GRK4	HGNC	ENSG00000125388				18	0	0	8	8	50
ZNF141	0	genome.wustl.edu	37	4	331751	331751	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	331751	331751	C	T	SNP	ZNF141	ENST00000366506	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF141	HGNC	ENSG00000131127				171	0	0	36	22	37.931
RFC1	0	genome.wustl.edu	37	4	39308307	39308307	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	39308307	39308307	A	T	SNP	RFC1	ENST00000381897	human	ensembl	74_37	-1	known	missense	c.1903	p.F635I	0.994	superfamily_P-loop_NTPase,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_P-loop_NTPase,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928				56	0	0	21	15	41.6667
UCHL1	0	genome.wustl.edu	37	4	41258982	41258982	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	41258982	41258982	C	T	SNP	UCHL1	ENST00000504818	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UCHL1	HGNC	ENSG00000154277				126	0	0	33	19	36.5385
SHISA3	0	genome.wustl.edu	37	4	42403209	42403209	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	42403209	42403209	C	A	SNP	SHISA3	ENST00000319234	human	ensembl	74_37	+1	known	missense	c.458	p.T153N	0.641	NULL	NULL	-	no_errors	SHISA3	HGNC	ENSG00000178343				438	0	0	128	58	31.1828
GABRB1	0	genome.wustl.edu	37	4	47427857	47427857	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	47427857	47427857	G	A	SNP	GABRB1	ENST00000295454	human	ensembl	74_37	+1	known	missense	c.1247	p.R416H	0.999	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288				110	0	0	44	31	41.3333
TXK	0	genome.wustl.edu	37	4	48097180	48097180	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	48097180	48097180	G	A	SNP	TXK	ENST00000264316	human	ensembl	74_37	-1	known	silent	c.561	p.S187	0.947	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	TXK	HGNC	ENSG00000074966				96	0	0	47	18	27.6923
ZAR1	0	genome.wustl.edu	37	4	48492719	48492719	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	48492719	48492719	G	A	SNP	ZAR1	ENST00000327939	human	ensembl	74_37	+1	known	silent	c.411	p.P137	0.002	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ZAR1	HGNC	ENSG00000182223				8	0	0	1	3	75
CLOCK	0	genome.wustl.edu	37	4	56345050	56345050	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	56345050	56345050	C	T	SNP	CLOCK	ENST00000309964	human	ensembl	74_37	-1	known	missense	c.188	p.G63D	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Nuc_translocat	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat	-	no_errors	CLOCK	HGNC	ENSG00000134852				26	0	0	30	22	42.3077
PPP2R2C	0	genome.wustl.edu	37	4	6331024	6331024	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	6331024	6331024	G	A	SNP	PPP2R2C	ENST00000335585	human	ensembl	74_37	-1	known	silent	c.1017	p.F339	0.996	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2C	HGNC	ENSG00000074211				85	0	0	34	16	32
UGT2B10	0	genome.wustl.edu	37	4	69696564	69696564	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	69696564	69696564	T	C	SNP	UGT2B10	ENST00000265403	human	ensembl	74_37	+1	known	silent	c.1554	p.F518	0.002	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B10	HGNC	ENSG00000109181				170	0	0	83	27	24.5455
NPFFR2	0	genome.wustl.edu	37	4	72897770	72897770	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	72897770	72897770	G	T	SNP	NPFFR2	ENST00000308744	human	ensembl	74_37	+1	known	missense	c.152	p.S51I	0.009	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291				86	0	0	9	17	65.3846
C4orf26	0	genome.wustl.edu	37	4	76481344	76481344	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	76481344	76481344	G	C	SNP	C4orf26	ENST00000311623	human	ensembl	74_37	+1	known	missense	c.52	p.V18L	0.001	NULL	NULL	-	no_errors	C4orf26	HGNC	ENSG00000174792				87	0	0	32	19	37.2549
SHROOM3	0	genome.wustl.edu	37	4	77663059	77663059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	77663059	77663059	G	A	SNP	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	missense	c.3733	p.A1245T	0.800	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771				36	0	0	13	7	35
WDFY3	0	genome.wustl.edu	37	4	85707176	85707176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	85707176	85707176	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.4018	p.R1340W	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				157	1	0.632911	41	29	41.4286
KLHL8	0	genome.wustl.edu	37	4	88091723	88091723	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	88091723	88091723	A	G	SNP	KLHL8	ENST00000273963	human	ensembl	74_37	-1	known	missense	c.1253	p.I418T	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332				121	0	0	61	37	37.7551
ZRSR1	0	genome.wustl.edu	37	5	112227939	112227939	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	112227939	112227939	T	C	SNP	ZRSR1	ENST00000391338	human	ensembl	74_37	+1	known	silent	c.603	p.S201	0.990	prints_U2_small	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,pfscan_RRM_dom,prints_U2_small	-	no_errors	ZRSR1	HGNC	ENSG00000212643				195	0	0	73	4	5.19481
DMXL1	0	genome.wustl.edu	37	5	118507479	118507479	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	118507479	118507479	T	C	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	missense	c.6496	p.S2166P	0.001	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				228	0	0	97	14	12.6126
ZNF474	0	genome.wustl.edu	37	5	121488779	121488779	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	121488779	121488779	A	G	SNP	ZNF474	ENST00000296600	human	ensembl	74_37	+1	known	nonstop	c.1094	p.*365W	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF474	HGNC	ENSG00000164185				109	0	0	18	19	51.3514
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				237	0	0	49	36	42.3529
GFRA3	0	genome.wustl.edu	37	5	137593489	137593489	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	137593489	137593489	G	A	SNP	GFRA3	ENST00000274721	human	ensembl	74_37	-1	known	silent	c.624	p.A208	0.000	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt_A3	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013				87	0	0	20	11	35.4839
APBB3	0	genome.wustl.edu	37	5	139938321	139938321	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	139938321	139938321	C	A	SNP	APBB3	ENST00000356738	human	ensembl	74_37	-1	known	missense	c.1325	p.R442L	1.000	NULL	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB3	HGNC	ENSG00000113108				113	0	0	29	12	29.2683
PCDHA2	0	genome.wustl.edu	37	5	140176039	140176039	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140176039	140176039	G	A	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	missense	c.1490	p.R497Q	0.963	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969				206	0	0	58	37	38.9474
PCDHA3	0	genome.wustl.edu	37	5	140182650	140182650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140182650	140182650	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.1868	p.R623H	0.702	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				156	0	0	49	26	34.6667
PCDHA6	0	genome.wustl.edu	37	5	140208784	140208784	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140208784	140208784	G	A	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.1108	p.A370T	0.986	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				246	0	0	125	64	33.8624
PCDHA7	0	genome.wustl.edu	37	5	140215475	140215475	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140215475	140215475	G	A	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.1507	p.A503T	0.027	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				235	0	0	83	37	30.8333
PCDHA12	0	genome.wustl.edu	37	5	140256960	140256960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140256960	140256960	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	missense	c.1903	p.R635C	0.983	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				168	0	0	48	28	36.8421
PCDHB2	0	genome.wustl.edu	37	5	140476279	140476279	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140476279	140476279	C	T	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	silent	c.1905	p.R635	0.991	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				190	0	0	70	45	39.1304
ENSG00000255622	0	genome.wustl.edu	37	5	140536869	140536869	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140536869	140536869	G	A	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	silent	c.1293	p.R431	0.843	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622				229	0	0	91	20	18.018
ENSG00000255622	0	genome.wustl.edu	37	5	140536956	140536956	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140536956	140536956	C	T	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	silent	c.1380	p.F460	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622				384	0	0	111	69	38.3333
PCDHB7	0	genome.wustl.edu	37	5	140553151	140553151	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140553151	140553151	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	silent	c.735	p.S245	0.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				139	0	0	50	34	40.4762
PCDHB16	0	genome.wustl.edu	37	5	140562820	140562820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140562820	140562820	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.686	p.R229H	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				161	0	0	46	25	35.2113
PCDHB16	0	genome.wustl.edu	37	5	140564112	140564112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140564112	140564112	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.1978	p.V660M	0.109	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				140	0	0	52	28	35
PCDHB13	0	genome.wustl.edu	37	5	140595831	140595831	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140595831	140595831	G	A	SNP	PCDHB13	ENST00000341948	human	ensembl	74_37	+1	known	silent	c.2136	p.R712	0.337	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372				354	0	0	113	55	32.7381
PCDHB15	0	genome.wustl.edu	37	5	140627138	140627138	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140627138	140627138	C	T	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	silent	c.1992	p.D664	0.051	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				203	0	0	74	39	34.5133
PCDHGB1	0	genome.wustl.edu	37	5	140730146	140730146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140730146	140730146	G	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	missense	c.319	p.A107T	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221				106	0	0	43	32	42.6667
PCDHGA4	0	genome.wustl.edu	37	5	140735645	140735645	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140735645	140735645	A	C	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.878	p.Q293P	0.526	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576				77	0	0	21	16	43.2432
PCDHGA4	0	genome.wustl.edu	37	5	140736919	140736919	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140736919	140736919	C	T	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.2152	p.R718C	0.998	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576				100	0	0	40	22	35.4839
PCDHGB2	0	genome.wustl.edu	37	5	140739977	140739977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140739977	140739977	G	A	SNP	PCDHGB2	ENST00000522605	human	ensembl	74_37	+1	known	missense	c.275	p.R92Q	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB2	HGNC	ENSG00000253910				340	0	0	98	47	32.4138
PCDHGA5	0	genome.wustl.edu	37	5	140745880	140745880	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140745880	140745880	C	T	SNP	PCDHGA5	ENST00000518069	human	ensembl	74_37	+1	known	silent	c.1983	p.T661	0.001	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485				511	0	0	150	86	36.4407
PCDHGA5	0	genome.wustl.edu	37	5	140746290	140746290	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140746290	140746290	A	C	SNP	PCDHGA5	ENST00000518069	human	ensembl	74_37	+1	known	missense	c.2393	p.D798A	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485				316	0	0	127	64	33.5079
PCDHGA6	0	genome.wustl.edu	37	5	140754085	140754085	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140754085	140754085	C	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	silent	c.435	p.N145	0.393	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				117	0	0	45	21	31.8182
PCDHGA6	0	genome.wustl.edu	37	5	140755360	140755360	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140755360	140755360	C	T	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	silent	c.1710	p.D570	0.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				519	0	0	154	67	30.3167
PCDHGA12	0	genome.wustl.edu	37	5	140811976	140811976	+	Silent	SNP	G	G	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140811976	140811976	G	C	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	silent	c.1650	p.L550	0.013	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				450	0	0	142	60	29.703
PCDHGA12	0	genome.wustl.edu	37	5	140812146	140812146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140812146	140812146	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.1820	p.R607H	0.895	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				188	0	0	86	47	35.3383
PCDHGC3	0	genome.wustl.edu	37	5	140856225	140856225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	140856225	140856225	C	T	SNP	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	missense	c.542	p.A181V	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				125	0	0	28	24	46.1538
SCGB3A2	0	genome.wustl.edu	37	5	147261725	147261725	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	147261725	147261725	G	A	SNP	SCGB3A2	ENST00000507160	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SCGB3A2	HGNC	ENSG00000164265				17	0	0	6	7	53.8462
ABLIM3	0	genome.wustl.edu	37	5	148619396	148619396	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	148619396	148619396	C	T	SNP	ABLIM3	ENST00000309868	human	ensembl	74_37	+1	known	silent	c.1149	p.S383	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM3	HGNC	ENSG00000173210				227	0	0	72	34	32.0755
G3BP1	0	genome.wustl.edu	37	5	151183470	151183470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	151183470	151183470	C	T	SNP	G3BP1	ENST00000356245	human	ensembl	74_37	+1	known	missense	c.1219	p.R407C	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP1	HGNC	ENSG00000145907				119	0	0	40	20	33.3333
MRPL22	0	genome.wustl.edu	37	5	154346305	154346305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	154346305	154346305	C	T	SNP	MRPL22	ENST00000523037	human	ensembl	74_37	+1	known	missense	c.469	p.R157C	0.004	pfam_Ribosomal_L22,superfamily_Ribosomal_L22	pfam_Ribosomal_L22,superfamily_Ribosomal_L22	-	no_errors	MRPL22	HGNC	ENSG00000082515				199	0	0	73	31	29.8077
TENM2	0	genome.wustl.edu	37	5	167379678	167379678	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	167379678	167379678	C	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	silent	c.798	p.S266	0.123	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				50	0	0	13	5	27.7778
SLIT3	0	genome.wustl.edu	37	5	168096798	168096798	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	168096798	168096798	G	C	SNP	SLIT3	ENST00000519560	human	ensembl	74_37	-1	known	missense	c.4326	p.H1442Q	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347				48	0	0	23	9	28.125
N4BP3	0	genome.wustl.edu	37	5	177547405	177547405	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	177547405	177547405	C	A	SNP	N4BP3	ENST00000274605	human	ensembl	74_37	+1	known	missense	c.557	p.P186H	1.000	NULL	NULL	-	no_errors	N4BP3	HGNC	ENSG00000145911				160	0	0	64	4	5.88235
ZNF354B	0	genome.wustl.edu	37	5	178310319	178310319	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	178310319	178310319	T	C	SNP	ZNF354B	ENST00000322434	human	ensembl	74_37	+1	known	missense	c.866	p.L289S	0.689	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354B	HGNC	ENSG00000178338				148	0	0	90	31	25.6198
GRM6	0	genome.wustl.edu	37	5	178410024	178410024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	178410024	178410024	C	T	SNP	GRM6	ENST00000231188	human	ensembl	74_37	-1	known	missense	c.2323	p.V775M	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM6	HGNC	ENSG00000113262				134	0	0	47	30	38.961
TBC1D9B	0	genome.wustl.edu	37	5	179302056	179302056	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	179302056	179302056	C	T	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.2032	p.V678I	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				161	0	0	46	20	30.303
CDH6	0	genome.wustl.edu	37	5	31297469	31297469	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	31297469	31297469	C	A	SNP	CDH6	ENST00000265071	human	ensembl	74_37	+1	known	nonsense	c.597	p.Y199*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361				130	0	0	66	29	30.5263
UGT3A1	0	genome.wustl.edu	37	5	35991394	35991394	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	35991394	35991394	C	T	SNP	UGT3A1	ENST00000513233	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	UGT3A1	HGNC	ENSG00000145626				56	0	0	19	9	32.1429
ITGA1	0	genome.wustl.edu	37	5	52194127	52194127	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	52194127	52194127	A	G	SNP	ITGA1	ENST00000282588	human	ensembl	74_37	+1	known	missense	c.1223	p.Q408R	1.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949				59	0	0	22	11	33.3333
SNX18	0	genome.wustl.edu	37	5	53815059	53815059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	53815059	53815059	G	A	SNP	SNX18	ENST00000326277	human	ensembl	74_37	+1	known	missense	c.1277	p.S426N	1.000	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX18	HGNC	ENSG00000178996				102	0	0	26	13	33.3333
SETD9	0	genome.wustl.edu	37	5	56209750	56209750	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	56209750	56209750	A	G	SNP	SETD9	ENST00000285947	human	ensembl	74_37	+1	known	missense	c.640	p.T214A	0.694	NULL	NULL	-	no_errors	SETD9	HGNC	ENSG00000155542				81	0	0	30	15	33.3333
BTF3	0	genome.wustl.edu	37	5	72801128	72801128	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	72801128	72801128	C	T	SNP	BTF3	ENST00000514505	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BTF3	HGNC	ENSG00000145741				29	0	0	23	7	23.3333
VCAN	0	genome.wustl.edu	37	5	82835591	82835591	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	82835591	82835591	G	T	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	nonsense	c.6769	p.G2257*	1.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				91	0	0	54	28	34.1463
CCNH	0	genome.wustl.edu	37	5	86705170	86705170	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	86705170	86705170	C	A	SNP	CCNH	ENST00000256897	human	ensembl	74_37	-1	known	missense	c.251	p.C84F	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_CyclinC,tigrfam_CyclinH/Ccl1	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_CyclinC,tigrfam_CyclinH/Ccl1	-	no_errors	CCNH	HGNC	ENSG00000134480				47	0	0	26	3	10.3448
POU5F2	0	genome.wustl.edu	37	5	93076993	93076993	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	93076993	93076993	G	A	SNP	POU5F2	ENST00000510627	human	ensembl	74_37	-1	known	nonsense	c.277	p.R93*	0.002	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU5F2	HGNC	ENSG00000248483				55	0	0	6	15	71.4286
BEND3	0	genome.wustl.edu	37	6	107389968	107389968	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	107389968	107389968	G	A	SNP	BEND3	ENST00000369042	human	ensembl	74_37	-1	known	silent	c.2427	p.C809	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409				157	0	0	52	30	36.5854
SOBP	0	genome.wustl.edu	37	6	107955723	107955723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	107955723	107955723	G	A	SNP	SOBP	ENST00000317357	human	ensembl	74_37	+1	known	missense	c.1675	p.G559R	0.997	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320				61	0	0	25	11	30.5556
GPR6	0	genome.wustl.edu	37	6	110300781	110300781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	110300781	110300781	G	A	SNP	GPR6	ENST00000414000	human	ensembl	74_37	+1	known	missense	c.511	p.V171I	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR6,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn	-	no_errors	GPR6	HGNC	ENSG00000146360				271	0	0	105	11	9.48276
FRK	0	genome.wustl.edu	37	6	116288822	116288822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	116288822	116288822	G	A	SNP	FRK	ENST00000606080	human	ensembl	74_37	-1	known	missense	c.691	p.R231C	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FRK	HGNC	ENSG00000111816				147	0	0	77	45	36.8852
PRELID1P1	0	genome.wustl.edu	37	6	126964909	126964909	+	RNA	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	126964909	126964909	C	T	SNP	PRELID1P1	ENST00000567272	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRELID1P1	HGNC	ENSG00000217325				64	0	0	14	7	33.3333
SOGA3	0	genome.wustl.edu	37	6	127836907	127836907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	127836907	127836907	C	T	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.853	p.G285S	0.006	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				39	0	0	7	7	50
LAMA2	0	genome.wustl.edu	37	6	129835564	129835564	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	129835564	129835564	A	G	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.9035	p.Y3012C	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				108	0	0	40	24	37.5
SLC2A12	0	genome.wustl.edu	37	6	134349555	134349555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	134349555	134349555	C	T	SNP	SLC2A12	ENST00000275230	human	ensembl	74_37	-1	known	missense	c.1408	p.V470I	1.000	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A12	HGNC	ENSG00000146411				133	0	0	45	24	34.7826
SGK1	0	genome.wustl.edu	37	6	134583282	134583282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	134583282	134583282	C	T	SNP	SGK1	ENST00000367858	human	ensembl	74_37	-1	known	missense	c.74	p.R25Q	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	SGK1	HGNC	ENSG00000118515				279	0	0	98	44	30.9859
BCLAF1	0	genome.wustl.edu	37	6	136597275	136597275	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	136597275	136597275	T	C	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.1388	p.E463G	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				171	0	0	134	27	16.7702
BCLAF1	0	genome.wustl.edu	37	6	136599781	136599781	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	136599781	136599781	A	G	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.238	p.Y80H	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				228	1	0.436681	122	33	21.2903
HECA	0	genome.wustl.edu	37	6	139487628	139487628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	139487628	139487628	G	A	SNP	HECA	ENST00000367658	human	ensembl	74_37	+1	known	missense	c.479	p.R160H	1.000	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406				213	0	0	69	34	33.0097
C6orf211	0	genome.wustl.edu	37	6	151790162	151790162	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	151790162	151790162	C	T	SNP	C6orf211	ENST00000367294	human	ensembl	74_37	+1	known	nonsense	c.1243	p.Q415*	0.767	pfam_DUF89,superfamily_DUF89	pfam_DUF89,superfamily_DUF89	-	no_errors	C6orf211	HGNC	ENSG00000146476				81	0	0	30	13	30.2326
ESR1	0	genome.wustl.edu	37	6	152332821	152332821	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	152332821	152332821	T	C	SNP	ESR1	ENST00000206249	human	ensembl	74_37	+1	known	missense	c.1127	p.V376A	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831				99	0	0	64	39	37.8641
SYNE1	0	genome.wustl.edu	37	6	152477160	152477160	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	152477160	152477160	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.23863	p.H7955Y	1.000	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				146	0	0	62	6	8.82353
TULP4	0	genome.wustl.edu	37	6	158914725	158914725	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	158914725	158914725	G	A	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	silent	c.1752	p.E584	1.000	superfamily_Tubby_C-like	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				147	0	0	46	26	36.1111
TMEM181	0	genome.wustl.edu	37	6	159029369	159029369	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	159029369	159029369	G	A	SNP	TMEM181	ENST00000367090	human	ensembl	74_37	+1	known	silent	c.1089	p.P363	0.997	NULL	NULL	-	no_errors	TMEM181	HGNC	ENSG00000146433				82	0	0	33	25	43.1034
SLC22A3	0	genome.wustl.edu	37	6	160829897	160829897	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	160829897	160829897	G	A	SNP	SLC22A3	ENST00000392145	human	ensembl	74_37	+1	known	nonsense	c.801	p.W267*	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A3	HGNC	ENSG00000146477				122	0	0	53	25	32.0513
SLC22A3	0	genome.wustl.edu	37	6	160864677	160864677	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	160864677	160864677	G	A	SNP	SLC22A3	ENST00000392145	human	ensembl	74_37	+1	known	silent	c.1416	p.S472	0.246	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A3	HGNC	ENSG00000146477				52	0	0	27	16	37.2093
TTLL2	0	genome.wustl.edu	37	6	167752266	167752266	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	167752266	167752266	G	A	SNP	TTLL2	ENST00000239587	human	ensembl	74_37	+1	known	missense	c.179	p.R60H	0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL2	HGNC	ENSG00000120440				41	0	0	19	3	13.6364
FRMD1	0	genome.wustl.edu	37	6	168457809	168457809	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	168457809	168457809	C	T	SNP	FRMD1	ENST00000283309	human	ensembl	74_37	-1	known	missense	c.1618	p.G540R	0.022	NULL	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD1	HGNC	ENSG00000153303				16	0	0	6	7	53.8462
KDM1B	0	genome.wustl.edu	37	6	18208403	18208403	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	18208403	18208403	C	A	SNP	KDM1B	ENST00000388870	human	ensembl	74_37	+1	known	missense	c.1835	p.T612N	0.164	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase	pfam_Amino_oxidase,pfam_Znf_CW,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_SWIRM,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pfscan_SWIRM,pfscan_Znf_CW	-	no_errors	KDM1B	HGNC	ENSG00000165097				136	0	0	29	74	71.8447
ZNF184	0	genome.wustl.edu	37	6	27420689	27420689	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	27420689	27420689	T	A	SNP	ZNF184	ENST00000211936	human	ensembl	74_37	-1	known	nonsense	c.649	p.K217*	0.530	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF184	HGNC	ENSG00000096654				296	0	0	62	154	71.2963
OR12D2	0	genome.wustl.edu	37	6	29364789	29364789	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	29364789	29364789	C	T	SNP	OR12D2	ENST00000383555	human	ensembl	74_37	+1	known	silent	c.313	p.L105	0.069	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR12D2	HGNC	ENSG00000168787				98	0	0	23	58	71.6049
VARS	0	genome.wustl.edu	37	6	31746992	31746992	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	31746992	31746992	C	T	SNP	VARS	ENST00000375663	human	ensembl	74_37	-1	known	missense	c.3478	p.A1160T	0.994	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS	HGNC	ENSG00000204394				36	0	0	3	14	82.3529
COL11A2	0	genome.wustl.edu	37	6	33133371	33133371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	33133371	33133371	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.4705	p.R1569C	1.000	pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				220	0	0	107	14	11.5702
SLC22A23	0	genome.wustl.edu	37	6	3324124	3324124	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	3324124	3324124	C	T	SNP	SLC22A23	ENST00000406686	human	ensembl	74_37	-1	known	nonsense	c.1026	p.W342*	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A23	HGNC	ENSG00000137266				46	0	0	9	22	70.9677
DAXX	0	genome.wustl.edu	37	6	33289268	33289268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	33289268	33289268	G	A	SNP	DAXX	ENST00000266000	human	ensembl	74_37	-1	known	missense	c.284	p.A95V	1.000	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209				199	0	0	66	27	29.0323
ITPR3	0	genome.wustl.edu	37	6	33662760	33662760	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	33662760	33662760	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	silent	c.7845	p.G2615	0.023	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				89	0	0	23	21	47.7273
PIM1	0	genome.wustl.edu	37	6	37139029	37139029	+	Silent	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	37139029	37139029	C	G	SNP	PIM1	ENST00000373509	human	ensembl	74_37	+1	known	silent	c.369	p.P123	0.976	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PIM1	HGNC	ENSG00000137193				394	0	0	168	16	8.69565
LRFN2	0	genome.wustl.edu	37	6	40399690	40399690	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	40399690	40399690	C	T	SNP	LRFN2	ENST00000338305	human	ensembl	74_37	-1	known	missense	c.1163	p.R388H	0.930	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN2	HGNC	ENSG00000156564				88	0	0	33	12	26.6667
FOXP4	0	genome.wustl.edu	37	6	41533594	41533594	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	41533594	41533594	C	T	SNP	FOXP4	ENST00000307972	human	ensembl	74_37	+1	known	silent	c.96	p.G32	0.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP4	HGNC	ENSG00000137166				298	0	0	71	39	35.4545
CUL9	0	genome.wustl.edu	37	6	43190359	43190359	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	43190359	43190359	G	T	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	nonsense	c.7012	p.G2338*	0.947	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				99	0	0	24	15	38.4615
SLC35B2	0	genome.wustl.edu	37	6	44225174	44225174	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	44225174	44225174	G	A	SNP	SLC35B2	ENST00000495706	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	SLC35B2	HGNC	ENSG00000157593				10	0	0	2	2	50
BAI3	0	genome.wustl.edu	37	6	69759195	69759195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	69759195	69759195	G	A	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.2290	p.A764T	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				45	0	0	32	20	38.4615
B3GAT2	0	genome.wustl.edu	37	6	71571627	71571627	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	71571627	71571627	C	T	SNP	B3GAT2	ENST00000230053	human	ensembl	74_37	-1	known	missense	c.791	p.R264H	1.000	pfam_Glyco_trans_43	pfam_Glyco_trans_43	-	no_errors	B3GAT2	HGNC	ENSG00000112309				96	0	0	45	30	40
RIMS1	0	genome.wustl.edu	37	6	72892034	72892034	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	72892034	72892034	A	G	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.860	p.K287R	0.998	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				91	0	0	27	10	27.027
RIMS1	0	genome.wustl.edu	37	6	72892074	72892074	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	72892074	72892074	C	T	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	silent	c.900	p.P300	0.623	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				90	0	0	21	13	38.2353
TPBG	0	genome.wustl.edu	37	6	83075087	83075087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	83075087	83075087	G	A	SNP	TPBG	ENST00000369750	human	ensembl	74_37	+1	known	missense	c.409	p.A137T	0.999	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	TPBG	HGNC	ENSG00000146242				115	1	0.862069	64	10	13.5135
TBX18	0	genome.wustl.edu	37	6	85446535	85446535	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	85446535	85446535	C	T	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	silent	c.1692	p.T564	0.007	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				127	0	0	51	35	40.6977
TBX18	0	genome.wustl.edu	37	6	85473619	85473619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	85473619	85473619	C	T	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	missense	c.281	p.R94H	0.997	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				11	0	0	1	5	83.3333
RRAGD	0	genome.wustl.edu	37	6	90097168	90097168	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	90097168	90097168	G	A	SNP	RRAGD	ENST00000369415	human	ensembl	74_37	-1	known	missense	c.290	p.T97I	1.000	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	-	no_errors	RRAGD	HGNC	ENSG00000025039				462	0	0	184	120	39.4737
MANEA	0	genome.wustl.edu	37	6	96034484	96034484	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	96034484	96034484	A	G	SNP	MANEA	ENST00000358812	human	ensembl	74_37	+1	known	missense	c.169	p.K57E	0.117	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	MANEA	HGNC	ENSG00000172469				104	0	0	92	5	5.15464
PNISR	0	genome.wustl.edu	37	6	99848984	99848984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	99848984	99848984	C	T	SNP	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	missense	c.1850	p.R617H	1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				120	0	0	89	14	13.5922
AGFG2	0	genome.wustl.edu	37	7	100161926	100161926	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	100161926	100161926	G	T	SNP	AGFG2	ENST00000300176	human	ensembl	74_37	+1	known	missense	c.1386	p.M462I	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGFG2	HGNC	ENSG00000106351				26	0	0	11	7	38.8889
EPHB4	0	genome.wustl.edu	37	7	100403157	100403157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	100403157	100403157	C	T	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	missense	c.2644	p.A882T	0.999	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411				274	0	0	72	41	36.2832
ACHE	0	genome.wustl.edu	37	7	100491560	100491560	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	100491560	100491560	A	G	SNP	ACHE	ENST00000302913	human	ensembl	74_37	-1	known	silent	c.294	p.S98	0.002	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085				219	0	0	63	23	26.7442
FBXL13	0	genome.wustl.edu	37	7	102566738	102566738	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	102566738	102566738	C	T	SNP	FBXL13	ENST00000313221	human	ensembl	74_37	-1	known	silent	c.861	p.T287	0.496	NULL	smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL13	HGNC	ENSG00000161040				55	0	0	22	12	35.2941
LAMB4	0	genome.wustl.edu	37	7	107706348	107706348	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	107706348	107706348	A	G	SNP	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	missense	c.2695	p.Y899H	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				153	0	0	57	39	40.625
MET	0	genome.wustl.edu	37	7	116435768	116435768	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	116435768	116435768	C	T	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	silent	c.3912	p.D1304	0.288	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				384	0	0	315	84	21.0526
MET	0	genome.wustl.edu	37	7	116436022	116436022	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	116436022	116436022	G	A	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	silent	c.4071	p.A1357	0.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				215	0	0	115	21	15.4412
MET	0	genome.wustl.edu	37	7	116436097	116436097	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	116436097	116436097	G	A	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	silent	c.4146	p.P1382	0.983	pirsf_Tyr_kinase_HGF/MSP_rcpt	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				277	0	0	175	29	14.2157
KCND2	0	genome.wustl.edu	37	7	119914694	119914694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	119914694	119914694	C	T	SNP	KCND2	ENST00000331113	human	ensembl	74_37	+1	known	missense	c.8	p.A3V	1.000	pfam_Shal-type	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408				320	0	0	203	13	6.01852
ASB15	0	genome.wustl.edu	37	7	123267185	123267185	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	123267185	123267185	C	T	SNP	ASB15	ENST00000275699	human	ensembl	74_37	+1	known	missense	c.719	p.A240V	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB15	HGNC	ENSG00000146809				154	1	0.645161	50	37	42.5287
UNCX	0	genome.wustl.edu	37	7	1275553	1275553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	1275553	1275553	C	T	SNP	UNCX	ENST00000316333	human	ensembl	74_37	+1	known	missense	c.536	p.P179L	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	UNCX	HGNC	ENSG00000164853				45	0	0	12	3	20
SND1	0	genome.wustl.edu	37	7	127721508	127721508	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	127721508	127721508	G	A	SNP	SND1	ENST00000354725	human	ensembl	74_37	+1	known	missense	c.2065	p.E689K	1.000	pfam_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				75	0	0	30	6	16.6667
FAM71F1	0	genome.wustl.edu	37	7	128370003	128370003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	128370003	128370003	C	T	SNP	FAM71F1	ENST00000315184	human	ensembl	74_37	+1	known	missense	c.901	p.R301C	0.084	NULL	pfam_DUF3699	-	no_errors	FAM71F1	HGNC	ENSG00000135248				205	0	0	70	44	38.5965
FLNC	0	genome.wustl.edu	37	7	128470903	128470903	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	128470903	128470903	T	C	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.212	p.I71T	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				73	0	0	15	9	37.5
PLXNA4	0	genome.wustl.edu	37	7	132192848	132192848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	132192848	132192848	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.605	p.R202Q	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				235	0	0	58	41	41.4141
DGKI	0	genome.wustl.edu	37	7	137293790	137293790	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	137293790	137293790	A	G	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	silent	c.1089	p.P363	0.984	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680				74	0	0	31	19	38
TBXAS1	0	genome.wustl.edu	37	7	139719830	139719830	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	139719830	139719830	G	A	SNP	TBXAS1	ENST00000414508	human	ensembl	74_37	+1	known	missense	c.1373	p.R458H	0.479	prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	TBXAS1	HGNC	ENSG00000059377				96	0	0	37	15	28.8462
MGAM	0	genome.wustl.edu	37	7	141747660	141747660	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	141747660	141747660	T	C	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	silent	c.2574	p.N858	1.000	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				41	0	0	21	12	36.3636
TRPV5	0	genome.wustl.edu	37	7	142622641	142622641	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	142622641	142622641	G	A	SNP	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	nonsense	c.1105	p.Q369*	0.015	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV5,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412				105	0	0	42	22	34.375
CUL1	0	genome.wustl.edu	37	7	148485743	148485743	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	148485743	148485743	T	C	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.1574	p.L525S	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				191	0	0	84	37	30.5785
CUL1	0	genome.wustl.edu	37	7	148495753	148495753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	148495753	148495753	G	A	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.2120	p.R707H	1.000	pfam_Cullin_neddylation_domain,smart_Cullin_neddylation_domain	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				176	0	0	45	28	38.3562
ZNF282	0	genome.wustl.edu	37	7	148921307	148921307	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	148921307	148921307	C	T	SNP	ZNF282	ENST00000262085	human	ensembl	74_37	+1	known	silent	c.1584	p.G528	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF282	HGNC	ENSG00000170265				69	0	0	20	9	31.0345
INTS1	0	genome.wustl.edu	37	7	1518141	1518141	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	1518141	1518141	C	T	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	silent	c.5088	p.V1696	0.990	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				36	0	0	13	5	27.7778
RBM33	0	genome.wustl.edu	37	7	155493520	155493520	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	155493520	155493520	A	T	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	missense	c.621	p.E207D	1.000	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				21	0	0	10	7	41.1765
MAD1L1	0	genome.wustl.edu	37	7	1997266	1997266	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	1997266	1997266	G	C	SNP	MAD1L1	ENST00000265854	human	ensembl	74_37	-1	known	missense	c.1594	p.Q532E	1.000	pfam_Mad1	pfam_Mad1	-	no_errors	MAD1L1	HGNC	ENSG00000002822				189	0	0	47	21	30.8824
SP8	0	genome.wustl.edu	37	7	20825187	20825187	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	20825187	20825187	C	T	SNP	SP8	ENST00000418710	human	ensembl	74_37	-1	known	silent	c.249	p.S83	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Antifreeze_1	-	no_errors	SP8	HGNC	ENSG00000164651				43	0	0	5	7	58.3333
HOXA4	0	genome.wustl.edu	37	7	27169037	27169037	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	27169037	27169037	C	T	SNP	HOXA4	ENST00000360046	human	ensembl	74_37	-1	known	missense	c.770	p.R257H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA4	HGNC	ENSG00000197576				190	0	0	63	39	38.2353
EVX1	0	genome.wustl.edu	37	7	27285699	27285699	+	Silent	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	27285699	27285699	C	A	SNP	EVX1	ENST00000496902	human	ensembl	74_37	+1	known	silent	c.879	p.A293	0.991	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	EVX1	HGNC	ENSG00000106038				39	0	0	13	6	31.5789
EEPD1	0	genome.wustl.edu	37	7	36194777	36194777	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	36194777	36194777	C	T	SNP	EEPD1	ENST00000242108	human	ensembl	74_37	+1	known	nonsense	c.844	p.R282*	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_HhH_motif,pfam_Endo/exonuclease/phosphatase,pfam_GspK,superfamily_Endo/exonuclease/phosphatase,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	-	no_errors	EEPD1	HGNC	ENSG00000122547				71	0	0	14	13	48.1481
AMPH	0	genome.wustl.edu	37	7	38502690	38502690	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	38502690	38502690	G	A	SNP	AMPH	ENST00000356264	human	ensembl	74_37	-1	known	missense	c.773	p.A258V	0.999	prints_Amphiphysin_1	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053				191	0	0	64	46	41.8182
SDK1	0	genome.wustl.edu	37	7	4002384	4002384	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	4002384	4002384	C	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.1330	p.R444C	0.952	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				16	0	0	3	8	72.7273
TNS3	0	genome.wustl.edu	37	7	47463773	47463773	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	47463773	47463773	C	A	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.399	p.Q133H	1.000	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				75	0	0	27	17	38.6364
UPP1	0	genome.wustl.edu	37	7	48147888	48147888	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	48147888	48147888	C	T	SNP	UPP1	ENST00000331803	human	ensembl	74_37	+1	known	silent	c.867	p.S289	0.000	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	pfam_Nucleoside_phosphorylase_d,tigrfam_Uridine_phosphorylase_euk	-	no_errors	UPP1	HGNC	ENSG00000183696				190	0	0	37	30	44.7761
LANCL2	0	genome.wustl.edu	37	7	55479744	55479744	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	55479744	55479744	G	A	SNP	LANCL2	ENST00000254770	human	ensembl	74_37	+1	known	missense	c.970	p.A324T	0.991	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LANC-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LanC-like_prot_euk,prints_LANC-like	-	no_errors	LANCL2	HGNC	ENSG00000132434				195	0	0	64	44	40.7407
GBAS	0	genome.wustl.edu	37	7	56062600	56062600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	56062600	56062600	C	T	SNP	GBAS	ENST00000322090	human	ensembl	74_37	+1	known	missense	c.631	p.R211C	1.000	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	-	no_errors	GBAS	HGNC	ENSG00000146729				296	0	0	93	43	31.6176
ZNF733P	0	genome.wustl.edu	37	7	62752299	62752299	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	62752299	62752299	G	A	SNP	ZNF733P	ENST00000331425	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.139	-	-	-	no_errors	ZNF733P	HGNC	ENSG00000185037				78	0	0	47	32	40.5063
RSPH10B2	0	genome.wustl.edu	37	7	6838127	6838127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	6838127	6838127	G	A	SNP	RSPH10B2	ENST00000297186	human	ensembl	74_37	+1	known	missense	c.2566	p.V856M	0.000	NULL	pfam_MORN,smart_MORN	-	no_errors	RSPH10B2	HGNC	ENSG00000169402				50	0	0	20	11	35.4839
WBSCR17	0	genome.wustl.edu	37	7	70800582	70800582	+	Silent	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	70800582	70800582	T	G	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	silent	c.285	p.G95	0.999	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				106	0	0	26	32	55.1724
CLIP2	0	genome.wustl.edu	37	7	73771749	73771749	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	73771749	73771749	C	A	SNP	CLIP2	ENST00000223398	human	ensembl	74_37	+1	known	missense	c.1157	p.T386K	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665				61	0	0	26	14	35
MAGI2	0	genome.wustl.edu	37	7	77789517	77789517	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	77789517	77789517	G	A	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	silent	c.2670	p.Y890	1.000	superfamily_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				97	0	0	29	21	42
CACNA2D1	0	genome.wustl.edu	37	7	81599268	81599268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	81599268	81599268	G	A	SNP	CACNA2D1	ENST00000356253	human	ensembl	74_37	-1	known	missense	c.2273	p.T758I	1.000	NULL	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956				105	0	0	46	9	16.3636
KIAA1324L	0	genome.wustl.edu	37	7	86522242	86522242	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	86522242	86522242	G	A	SNP	KIAA1324L	ENST00000450689	human	ensembl	74_37	-1	known	nonsense	c.2860	p.Q954*	1.000	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324L	HGNC	ENSG00000164659				91	0	0	41	31	43.0556
PEX1	0	genome.wustl.edu	37	7	92118635	92118635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	92118635	92118635	C	T	SNP	PEX1	ENST00000248633	human	ensembl	74_37	-1	known	missense	c.3739	p.E1247K	0.998	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980				53	0	0	15	11	42.3077
RBM48	0	genome.wustl.edu	37	7	92164141	92164141	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	92164141	92164141	C	T	SNP	RBM48	ENST00000265732	human	ensembl	74_37	+1	known	missense	c.874	p.R292C	0.000	NULL	NULL	-	no_errors	RBM48	HGNC	ENSG00000127993				68	0	0	26	15	36.5854
STAG3	0	genome.wustl.edu	37	7	99779803	99779803	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	99779803	99779803	G	A	SNP	STAG3	ENST00000317296	human	ensembl	74_37	+1	known	silent	c.207	p.P69	0.152	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923				91	0	0	31	18	36.7347
SLC25A32	0	genome.wustl.edu	37	8	104414250	104414250	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	104414250	104414250	A	G	SNP	SLC25A32	ENST00000521645	human	ensembl	74_37	-1	known	missense	c.424	p.W142R	0.999	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A32	HGNC	ENSG00000164933				50	0	0	32	15	31.9149
RIMS2	0	genome.wustl.edu	37	8	105025741	105025741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	105025741	105025741	G	A	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.3116	p.R1039Q	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				94	0	0	83	27	24.5455
DPYS	0	genome.wustl.edu	37	8	105456608	105456608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	105456608	105456608	G	A	SNP	DPYS	ENST00000351513	human	ensembl	74_37	-1	known	missense	c.661	p.R221C	1.000	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYS	HGNC	ENSG00000147647				69	0	0	50	18	26.4706
OXR1	0	genome.wustl.edu	37	8	107695429	107695429	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	107695429	107695429	T	C	SNP	OXR1	ENST00000442977	human	ensembl	74_37	+1	known	silent	c.309	p.V103	1.000	pfam_LysM_dom,smart_LysM_dom	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830				88	0	0	67	32	32.3232
XKR6	0	genome.wustl.edu	37	8	11058241	11058241	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	11058241	11058241	C	G	SNP	XKR6	ENST00000416569	human	ensembl	74_37	-1	known	missense	c.608	p.G203A	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044				51	0	0	29	7	19.4444
FAM167A	0	genome.wustl.edu	37	8	11301796	11301796	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	11301796	11301796	C	T	SNP	FAM167A	ENST00000284486	human	ensembl	74_37	-1	known	missense	c.125	p.R42H	1.000	NULL	pfam_FAM167	-	no_errors	FAM167A	HGNC	ENSG00000154319				199	0	0	100	41	29.078
ZHX2	0	genome.wustl.edu	37	8	123965245	123965245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	123965245	123965245	G	A	SNP	ZHX2	ENST00000314393	human	ensembl	74_37	+1	known	missense	c.1495	p.V499I	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764				105	0	0	44	23	34.3284
FAM91A1	0	genome.wustl.edu	37	8	124812010	124812010	+	Splice_Site	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	124812010	124812010	A	G	SNP	FAM91A1	ENST00000334705	human	ensembl	74_37	+1	known	splice_site	c.1696-2	e18-2	1.000	-	-	-	no_errors	FAM91A1	HGNC	ENSG00000176853				152	0	0	140	71	33.6493
FER1L6	0	genome.wustl.edu	37	8	125015462	125015462	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	125015462	125015462	T	C	SNP	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	silent	c.1575	p.A525	0.000	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				170	0	0	98	41	29.4964
KCNQ3	0	genome.wustl.edu	37	8	133196585	133196585	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	133196585	133196585	G	A	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	silent	c.507	p.A169	0.443	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				228	0	0	96	40	29.4118
WISP1	0	genome.wustl.edu	37	8	134225170	134225170	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	134225170	134225170	C	T	SNP	WISP1	ENST00000250160	human	ensembl	74_37	+1	known	missense	c.133	p.R45C	1.000	pirsf_IGFBP_CNN	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415				64	0	0	23	6	20.6897
WISP1	0	genome.wustl.edu	37	8	134239807	134239807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	134239807	134239807	G	A	SNP	WISP1	ENST00000250160	human	ensembl	74_37	+1	known	missense	c.958	p.V320M	0.831	pfam_Cys_knot,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415				151	0	0	113	32	22.069
COL22A1	0	genome.wustl.edu	37	8	139833454	139833454	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	139833454	139833454	G	A	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	silent	c.1170	p.I390	0.941	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				94	0	0	70	20	22.2222
KCNK9	0	genome.wustl.edu	37	8	140714992	140714992	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	140714992	140714992	C	T	SNP	KCNK9	ENST00000303015	human	ensembl	74_37	-1	known	missense	c.244	p.G82S	1.000	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK9,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427				43	0	0	23	6	20.6897
BAI1	0	genome.wustl.edu	37	8	143570413	143570413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	143570413	143570413	G	A	SNP	BAI1	ENST00000323289	human	ensembl	74_37	+1	known	missense	c.2470	p.V824M	0.997	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790				39	0	0	11	5	31.25
SCRIB	0	genome.wustl.edu	37	8	144887368	144887368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	144887368	144887368	C	T	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.2584	p.V862M	0.049	superfamily_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				25	0	0	21	5	19.2308
EPPK1	0	genome.wustl.edu	37	8	144946750	144946750	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	144946750	144946750	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.672	p.S224	0.014	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				40	0	0	25	3	10.7143
PLEC	0	genome.wustl.edu	37	8	144990725	144990725	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	144990725	144990725	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.13675	p.A4559T	0.998	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				227	1	0.438596	106	33	23.741
PLEC	0	genome.wustl.edu	37	8	144991258	144991258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	144991258	144991258	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.13142	p.R4381H	1.000	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				163	0	0	53	26	32.9114
PLEC	0	genome.wustl.edu	37	8	144996042	144996042	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	144996042	144996042	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.8358	p.L2786	0.994	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				59	0	0	18	8	30.7692
PLEC	0	genome.wustl.edu	37	8	145003355	145003355	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	145003355	145003355	G	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.3587	p.A1196E	0.316	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				26	0	0	10	4	28.5714
PLEC	0	genome.wustl.edu	37	8	145011331	145011331	+	Splice_Site	SNP	A	A	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	145011331	145011331	A	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	splice_site	c.753+2	e4+2	1.000	-	-	-	no_errors	PLEC	HGNC	ENSG00000178209				95	0	0	49	15	23.4375
GPAA1	0	genome.wustl.edu	37	8	145139999	145139999	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	145139999	145139999	C	T	SNP	GPAA1	ENST00000355091	human	ensembl	74_37	+1	known	silent	c.1218	p.P406	0.001	pfam_Gaa1,pirsf_GPI_prot_transamidse_cplx_GAA1	pfam_Gaa1,pirsf_GPI_prot_transamidse_cplx_GAA1	-	no_errors	GPAA1	HGNC	ENSG00000197858				70	0	0	41	4	8.88889
CYC1	0	genome.wustl.edu	37	8	145151105	145151105	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	145151105	145151105	G	A	SNP	CYC1	ENST00000318911	human	ensembl	74_37	+1	known	silent	c.405	p.L135	1.000	pfam_Cyt_c1,superfamily_Cyt_c-like_dom	pfam_Cyt_c1,superfamily_Cyt_c-like_dom,superfamily_Cyt_c1_TM_anchor_C,prints_Cyt_c1	-	no_errors	CYC1	HGNC	ENSG00000179091				444	0	0	162	63	28
MAF1	0	genome.wustl.edu	37	8	145161313	145161313	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	145161313	145161313	A	C	SNP	MAF1	ENST00000322428	human	ensembl	74_37	+1	known	missense	c.446	p.Q149P	1.000	pfam_Maf1,pirsf_Maf1	pfam_Maf1,pirsf_Maf1	-	no_errors	MAF1	HGNC	ENSG00000179632				72	0	0	35	21	37.5
DGAT1	0	genome.wustl.edu	37	8	145541626	145541626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	145541626	145541626	C	T	SNP	DGAT1	ENST00000332324	human	ensembl	74_37	-1	known	missense	c.806	p.R269H	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam,superfamily_PEP-util_enz_mobile_dom	-	no_errors	DGAT1	HGNC	ENSG00000185000				130	0	0	38	14	26.9231
PCM1	0	genome.wustl.edu	37	8	17824624	17824624	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	17824624	17824624	G	A	SNP	PCM1	ENST00000325083	human	ensembl	74_37	+1	known	silent	c.3357	p.Q1119	1.000	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674				18	0	0	6	5	45.4545
PSD3	0	genome.wustl.edu	37	8	18541569	18541569	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	18541569	18541569	G	A	SNP	PSD3	ENST00000521878	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.926	-	-	-	no_errors	PSD3	HGNC	ENSG00000156011				20	0	0	20	8	28.5714
ZNF596	0	genome.wustl.edu	37	8	195449	195449	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	195449	195449	G	T	SNP	ZNF596	ENST00000308811	human	ensembl	74_37	+1	known	missense	c.602	p.G201V	0.995	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF596	HGNC	ENSG00000172748				96	0	0	93	34	26.7717
DMTN	0	genome.wustl.edu	37	8	21938939	21938939	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	21938939	21938939	C	T	SNP	DMTN	ENST00000265800	human	ensembl	74_37	+1	known	missense	c.1183	p.R395W	1.000	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	DMTN	HGNC	ENSG00000158856				167	0	0	77	19	19.7917
HR	0	genome.wustl.edu	37	8	21985065	21985065	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	21985065	21985065	G	T	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	missense	c.890	p.P297Q	0.669	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453				88	0	0	77	7	8.33333
LGI3	0	genome.wustl.edu	37	8	22005888	22005888	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	22005888	22005888	G	A	SNP	LGI3	ENST00000306317	human	ensembl	74_37	-1	known	missense	c.1432	p.R478C	0.998	pfam_EPTP,pfscan_EAR	pfam_EPTP,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI3	HGNC	ENSG00000168481				54	0	0	18	8	30.7692
BMP1	0	genome.wustl.edu	37	8	22054887	22054887	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	22054887	22054887	C	T	SNP	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	silent	c.2061	p.S687	0.461	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				407	0	0	177	54	23.3766
NEFM	0	genome.wustl.edu	37	8	24771385	24771385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	24771385	24771385	G	A	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.79	p.V27I	0.009	pfam_Intermed_filament_DNA-bd	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				54	0	0	24	9	27.2727
STMN4	0	genome.wustl.edu	37	8	27097502	27097502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	27097502	27097502	G	A	SNP	STMN4	ENST00000350889	human	ensembl	74_37	-1	known	missense	c.577	p.R193W	1.000	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	-	no_errors	STMN4	HGNC	ENSG00000015592				109	1	0.909091	59	16	21.3333
CHRNA2	0	genome.wustl.edu	37	8	27320682	27320682	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	27320682	27320682	T	C	SNP	CHRNA2	ENST00000407991	human	ensembl	74_37	-1	known	silent	c.1278	p.A426	0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA2	HGNC	ENSG00000120903				133	0	0	81	24	22.8571
KIF13B	0	genome.wustl.edu	37	8	28967542	28967542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	28967542	28967542	C	T	SNP	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	missense	c.3976	p.A1326T	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892				14	0	0	9	4	30.7692
GTF2E2	0	genome.wustl.edu	37	8	30511088	30511088	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	30511088	30511088	C	A	SNP	GTF2E2	ENST00000355904	human	ensembl	74_37	-1	known	nonsense	c.28	p.E10*	1.000	pirsf_TFIIE-bsu	pfam_TFIIE_bsu_DNA-bd,pirsf_TFIIE-bsu	-	no_errors	GTF2E2	HGNC	ENSG00000197265				94	0	0	85	29	25.4386
PURG	0	genome.wustl.edu	37	8	30889510	30889510	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	30889510	30889510	C	T	SNP	PURG	ENST00000475541	human	ensembl	74_37	-1	known	silent	c.789	p.E263	1.000	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	-	no_errors	PURG	HGNC	ENSG00000172733				123	0	0	79	39	33.0508
NRG1	0	genome.wustl.edu	37	8	32613965	32613965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	32613965	32613965	G	A	SNP	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	missense	c.872	p.R291Q	1.000	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				191	0	0	114	47	29.1925
UNC5D	0	genome.wustl.edu	37	8	35425752	35425752	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	35425752	35425752	C	T	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	silent	c.459	p.R153	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				126	0	0	125	15	10.7143
DDHD2	0	genome.wustl.edu	37	8	38111155	38111155	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	38111155	38111155	G	A	SNP	DDHD2	ENST00000397166	human	ensembl	74_37	+1	known	missense	c.1973	p.R658H	1.000	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfam_WWE-dom,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD,pfscan_WWE-dom	-	no_errors	DDHD2	HGNC	ENSG00000085788				195	0	0	144	43	22.9947
PPAPDC1B	0	genome.wustl.edu	37	8	38123659	38123659	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	38123659	38123659	C	A	SNP	PPAPDC1B	ENST00000422581	human	ensembl	74_37	-1	known	nonsense	c.634	p.G212*	1.000	smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAPDC1B	HGNC	ENSG00000147535				50	0	0	25	5	16.6667
HTRA4	0	genome.wustl.edu	37	8	38835654	38835654	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	38835654	38835654	T	C	SNP	HTRA4	ENST00000302495	human	ensembl	74_37	+1	known	silent	c.954	p.D318	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,prints_Peptidase_S1C	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA4	HGNC	ENSG00000169495				81	0	0	37	9	19.5652
TM2D2	0	genome.wustl.edu	37	8	38853837	38853837	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	38853837	38853837	T	G	SNP	TM2D2	ENST00000456397	human	ensembl	74_37	-1	known	missense	c.122	p.E41A	0.208	NULL	pfam_TM2	-	no_errors	TM2D2	HGNC	ENSG00000169490				214	0	0	67	25	27.1739
ANK1	0	genome.wustl.edu	37	8	41551521	41551521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	41551521	41551521	G	A	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.3427	p.R1143C	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				107	0	0	37	11	22.9167
ANK1	0	genome.wustl.edu	37	8	41583411	41583411	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	41583411	41583411	G	A	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	silent	c.480	p.V160	0.995	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				45	0	0	20	15	42.8571
PXDNL	0	genome.wustl.edu	37	8	52321634	52321634	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	52321634	52321634	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	silent	c.2550	p.A850	0.018	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				43	0	0	31	7	18.4211
PXDNL	0	genome.wustl.edu	37	8	52325815	52325815	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	52325815	52325815	A	G	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.1799	p.I600T	0.000	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				81	0	0	44	16	26.6667
NPBWR1	0	genome.wustl.edu	37	8	53853444	53853444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	53853444	53853444	C	T	SNP	NPBWR1	ENST00000331251	human	ensembl	74_37	+1	known	missense	c.977	p.A326V	0.062	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729				38	0	0	32	6	15.7895
TGS1	0	genome.wustl.edu	37	8	56708701	56708701	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	56708701	56708701	T	C	SNP	TGS1	ENST00000260129	human	ensembl	74_37	+1	known	missense	c.1532	p.I511T	0.985	NULL	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574				26	0	0	35	3	7.89474
MOS	0	genome.wustl.edu	37	8	57025712	57025712	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	57025712	57025712	G	A	SNP	MOS	ENST00000311923	human	ensembl	74_37	-1	known	missense	c.830	p.A277V	0.553	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOS	HGNC	ENSG00000172680				88	0	0	57	20	25.974
CHD7	0	genome.wustl.edu	37	8	61769043	61769043	+	Silent	SNP	A	A	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	61769043	61769043	A	C	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	silent	c.7204	p.R2402	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				49	0	0	34	6	15
MCPH1	0	genome.wustl.edu	37	8	6299603	6299603	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	6299603	6299603	A	G	SNP	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	missense	c.596	p.Q199R	0.001	NULL	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				58	0	0	47	17	26.5625
EYA1	0	genome.wustl.edu	37	8	72211325	72211325	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	72211325	72211325	C	T	SNP	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	silent	c.783	p.P261	0.694	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				160	0	0	101	25	19.8413
MSC	0	genome.wustl.edu	37	8	72756093	72756093	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	72756093	72756093	C	T	SNP	MSC	ENST00000325509	human	ensembl	74_37	-1	known	silent	c.321	p.S107	0.368	superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MSC	HGNC	ENSG00000178860				50	0	0	19	7	26.9231
KCNB2	0	genome.wustl.edu	37	8	73480280	73480280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	73480280	73480280	G	A	SNP	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	missense	c.311	p.R104Q	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				143	0	0	88	30	25.4237
KCNB2	0	genome.wustl.edu	37	8	73848408	73848408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	73848408	73848408	C	T	SNP	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	missense	c.818	p.A273V	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				156	1	0.636943	99	41	29.2857
ZFHX4	0	genome.wustl.edu	37	8	77766976	77766976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	77766976	77766976	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.7819	p.R2607C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				61	0	0	45	13	22.4138
FABP9	0	genome.wustl.edu	37	8	82371419	82371419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	82371419	82371419	G	A	SNP	FABP9	ENST00000379071	human	ensembl	74_37	-1	known	missense	c.227	p.A76V	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP9	HGNC	ENSG00000205186				202	0	0	156	61	28.1106
SLC7A13	0	genome.wustl.edu	37	8	87242434	87242434	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	87242434	87242434	T	C	SNP	SLC7A13	ENST00000297524	human	ensembl	74_37	-1	known	missense	c.73	p.N25D	0.003	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A13	HGNC	ENSG00000164893				118	0	0	91	40	30.5344
OTUD6B	0	genome.wustl.edu	37	8	92083383	92083383	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	92083383	92083383	A	G	SNP	OTUD6B	ENST00000285420	human	ensembl	74_37	+1	known	missense	c.190	p.K64E	1.000	NULL	pfam_OTU,pfam_Peptidase_C65_otubain,pfscan_OTU	-	no_errors	OTUD6B	HGNC	ENSG00000155100				114	0	0	52	29	35.8025
INVS	0	genome.wustl.edu	37	9	103060391	103060391	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	103060391	103060391	C	T	SNP	INVS	ENST00000541287	human	ensembl	74_37	+1	known	missense	c.2902	p.P968S	0.070	NULL	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				18	0	0	14	10	41.6667
OR13C5	0	genome.wustl.edu	37	9	107360981	107360981	+	Silent	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	107360981	107360981	G	T	SNP	OR13C5	ENST00000374779	human	ensembl	74_37	-1	known	silent	c.714	p.S238	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800				163	0	0	78	51	39.5349
ZNF462	0	genome.wustl.edu	37	9	109687834	109687834	+	Silent	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	109687834	109687834	A	G	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	silent	c.1641	p.P547	0.196	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				42	0	0	21	11	34.375
ZNF462	0	genome.wustl.edu	37	9	109690810	109690810	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	109690810	109690810	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	silent	c.4617	p.P1539	0.629	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				58	0	0	37	9	19.5652
ACTL7A	0	genome.wustl.edu	37	9	111625857	111625857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	111625857	111625857	C	T	SNP	ACTL7A	ENST00000333999	human	ensembl	74_37	+1	known	missense	c.1255	p.R419C	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7A	HGNC	ENSG00000187003				89	0	0	22	11	33.3333
SNX30	0	genome.wustl.edu	37	9	115600849	115600849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	115600849	115600849	G	A	SNP	SNX30	ENST00000374232	human	ensembl	74_37	+1	known	missense	c.886	p.E296K	0.939	pfam_Vps5_C,pfam_BAR_dom	pfam_Phox,pfam_Vps5_C,pfam_BAR_dom,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX30	HGNC	ENSG00000148158				158	0	0	61	21	25.6098
ATP6V1G1	0	genome.wustl.edu	37	9	117359933	117359933	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	117359933	117359933	G	A	SNP	ATP6V1G1	ENST00000374050	human	ensembl	74_37	+1	known	silent	c.267	p.R89	0.752	tigrfam_V-ATPase_G	tigrfam_V-ATPase_G	-	no_errors	ATP6V1G1	HGNC	ENSG00000136888				140	0	0	64	5	7.24638
ASTN2	0	genome.wustl.edu	37	9	119903693	119903693	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	119903693	119903693	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	silent	c.1080	p.R360	0.244	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				92	0	0	35	12	25.5319
ASTN2	0	genome.wustl.edu	37	9	120176910	120176910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	120176910	120176910	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.307	p.A103T	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				9	0	0	3	2	40
TRAF1	0	genome.wustl.edu	37	9	123675736	123675736	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	123675736	123675736	C	A	SNP	TRAF1	ENST00000373887	human	ensembl	74_37	-1	known	missense	c.575	p.G192V	0.989	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	-	no_errors	TRAF1	HGNC	ENSG00000056558				104	0	0	34	17	33.3333
GSN	0	genome.wustl.edu	37	9	124064376	124064376	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	124064376	124064376	G	A	SNP	GSN	ENST00000373818	human	ensembl	74_37	+1	known	missense	c.280	p.A94T	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	GSN	HGNC	ENSG00000148180				298	0	0	104	13	11.1111
GSN	0	genome.wustl.edu	37	9	124079433	124079433	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	124079433	124079433	C	A	SNP	GSN	ENST00000373818	human	ensembl	74_37	+1	known	missense	c.976	p.L326M	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	GSN	HGNC	ENSG00000148180				346	0	0	136	14	9.33333
GSN	0	genome.wustl.edu	37	9	124091285	124091285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	124091285	124091285	C	T	SNP	GSN	ENST00000373818	human	ensembl	74_37	+1	known	missense	c.2032	p.R678C	0.984	smart_Villin/Gelsolin	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	GSN	HGNC	ENSG00000148180				33	0	0	30	11	26.8293
GARNL3	0	genome.wustl.edu	37	9	130111298	130111298	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	130111298	130111298	C	T	SNP	GARNL3	ENST00000373387	human	ensembl	74_37	+1	known	silent	c.1527	p.G509	1.000	pfam_Citron,smart_Citron	pfam_Citron,pfam_Rap_GAP_dom,smart_Citron,pfscan_Rap_GAP_dom	-	no_errors	GARNL3	HGNC	ENSG00000136895				82	0	0	27	19	41.3043
ST6GALNAC6	0	genome.wustl.edu	37	9	130648926	130648926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	130648926	130648926	C	T	SNP	ST6GALNAC6	ENST00000373142	human	ensembl	74_37	-1	putative	missense	c.950	p.R317H	1.000	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC6	HGNC	ENSG00000160408				180	0	0	35	22	38.5965
GOLGA2	0	genome.wustl.edu	37	9	131020423	131020423	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	131020423	131020423	G	A	SNP	GOLGA2	ENST00000421699	human	ensembl	74_37	-1	known	missense	c.2263	p.R755C	0.000	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110				34	0	0	8	8	50
MPDZ	0	genome.wustl.edu	37	9	13121774	13121774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	13121774	13121774	G	A	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.5195	p.P1732L	1.000	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				104	0	0	36	17	32.0755
NUP188	0	genome.wustl.edu	37	9	131718660	131718660	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	131718660	131718660	A	G	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.193	p.K65E	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				48	0	0	15	14	48.2759
ASS1	0	genome.wustl.edu	37	9	133355792	133355792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	133355792	133355792	G	A	SNP	ASS1	ENST00000352480	human	ensembl	74_37	+1	known	missense	c.794	p.R265H	1.000	pfam_Arginosuc_synth,tigrfam_Arginosuc_synth	pfam_Arginosuc_synth,pfam_QueC,tigrfam_Arginosuc_synth	-	no_errors	ASS1	HGNC	ENSG00000130707				91	0	0	27	10	27.027
PRRC2B	0	genome.wustl.edu	37	9	134340381	134340381	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	134340381	134340381	C	T	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.1636	p.R546W	0.981	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				119	0	0	20	10	33.3333
PRRC2B	0	genome.wustl.edu	37	9	134350806	134350806	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	134350806	134350806	G	A	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.3290	p.R1097H	0.369	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				41	0	0	12	3	20
OBP2B	0	genome.wustl.edu	37	9	136084560	136084560	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	136084560	136084560	C	T	SNP	OBP2B	ENST00000372034	human	ensembl	74_37	-1	known	silent	c.27	p.T9	0.001	NULL	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland,prints_PstgldnD_synth	-	no_errors	OBP2B	HGNC	ENSG00000171102				22	0	0	12	5	29.4118
VAV2	0	genome.wustl.edu	37	9	136726466	136726466	+	RNA	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	136726466	136726466	G	T	SNP	VAV2	ENST00000486113	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VAV2	HGNC	ENSG00000160293				39	0	0	6	5	45.4545
PMPCA	0	genome.wustl.edu	37	9	139317663	139317663	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	139317663	139317663	G	A	SNP	PMPCA	ENST00000371717	human	ensembl	74_37	+1	known	missense	c.1525	p.A509T	0.994	NULL	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	PMPCA	HGNC	ENSG00000165688				89	0	0	25	12	32.4324
INPP5E	0	genome.wustl.edu	37	9	139324254	139324254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	139324254	139324254	G	A	SNP	INPP5E	ENST00000371712	human	ensembl	74_37	-1	known	missense	c.1808	p.P603L	0.999	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5E	HGNC	ENSG00000148384				113	0	0	45	5	10
DPP7	0	genome.wustl.edu	37	9	140007557	140007557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	140007557	140007557	G	A	SNP	DPP7	ENST00000371579	human	ensembl	74_37	-1	known	missense	c.718	p.R240C	0.601	pfam_Peptidase_S28,pfam_AB_hydrolase_1	pfam_Peptidase_S28,pfam_AB_hydrolase_1	-	no_errors	DPP7	HGNC	ENSG00000176978				148	0	0	31	17	35.4167
NDOR1	0	genome.wustl.edu	37	9	140106987	140106987	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	140106987	140106987	C	T	SNP	NDOR1	ENST00000371521	human	ensembl	74_37	+1	known	missense	c.247	p.P83S	1.000	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NDOR1	HGNC	ENSG00000188566				195	0	0	44	16	26.6667
EHMT1	0	genome.wustl.edu	37	9	140638440	140638440	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	140638440	140638440	C	T	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	silent	c.1068	p.L356	0.703	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				84	0	0	36	8	18.1818
CCDC171	0	genome.wustl.edu	37	9	15594156	15594156	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	15594156	15594156	C	A	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	missense	c.661	p.Q221K	1.000	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				81	0	0	38	14	26.9231
CNTLN	0	genome.wustl.edu	37	9	17135197	17135197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	17135197	17135197	C	T	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.134	p.A45V	0.003	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				41	0	0	8	4	33.3333
KCNV2	0	genome.wustl.edu	37	9	2718877	2718877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	2718877	2718877	C	T	SNP	KCNV2	ENST00000382082	human	ensembl	74_37	+1	known	missense	c.1138	p.R380C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263				125	0	0	40	27	40.2985
DNAJA1	0	genome.wustl.edu	37	9	33034308	33034308	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	33034308	33034308	G	A	SNP	DNAJA1	ENST00000330899	human	ensembl	74_37	+1	known	silent	c.738	p.K246	1.000	pfam_DnaJ_C,superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_domain,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA1	HGNC	ENSG00000086061				73	0	0	29	15	34.0909
TLN1	0	genome.wustl.edu	37	9	35711378	35711378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	35711378	35711378	C	T	SNP	TLN1	ENST00000314888	human	ensembl	74_37	-1	known	missense	c.3893	p.R1298Q	0.964	pfam_Vinculin-bd_dom,superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN1	HGNC	ENSG00000137076				145	0	0	55	24	30.3797
ZBTB5	0	genome.wustl.edu	37	9	37440550	37440550	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	37440550	37440550	A	G	SNP	ZBTB5	ENST00000307750	human	ensembl	74_37	-1	known	missense	c.1999	p.W667R	1.000	pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795				98	0	0	25	17	40.4762
ZNF658	0	genome.wustl.edu	37	9	40773995	40773995	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	40773995	40773995	G	A	SNP	ZNF658	ENST00000377626	human	ensembl	74_37	-1	known	missense	c.1280	p.P427L	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409				165	0	0	78	52	40
JAK2	0	genome.wustl.edu	37	9	5064999	5064999	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	5064999	5064999	C	T	SNP	JAK2	ENST00000381652	human	ensembl	74_37	+1	known	silent	c.1173	p.A391	0.034	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968				80	0	0	33	14	29.7872
KIAA1432	0	genome.wustl.edu	37	9	5765510	5765510	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	5765510	5765510	C	T	SNP	KIAA1432	ENST00000418622	human	ensembl	74_37	+1	known	nonsense	c.2701	p.R901*	1.000	pfam_Ribosome_control_1	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036				285	1	0.34965	150	15	9.09091
FOXD4L5	0	genome.wustl.edu	37	9	70177146	70177146	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	70177146	70177146	C	T	SNP	FOXD4L5	ENST00000377420	human	ensembl	74_37	-1	known	missense	c.838	p.G280R	0.115	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L5	HGNC	ENSG00000204779				164	1	0.606061	67	12	15.1899
PGM5	0	genome.wustl.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	70993145	70993145	A	G	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.292	p.I98V	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				106	1	0.934579	68	13	16.0494
SMC5	0	genome.wustl.edu	37	9	72967216	72967216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	72967216	72967216	G	A	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	missense	c.3275	p.R1092Q	1.000	NULL	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887				183	0	0	69	23	25
TRPM3	0	genome.wustl.edu	37	9	73233871	73233871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	73233871	73233871	C	T	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.2315	p.R772H	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				86	0	0	31	24	43.6364
GCNT1	0	genome.wustl.edu	37	9	79118407	79118407	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	79118407	79118407	G	A	SNP	GCNT1	ENST00000376730	human	ensembl	74_37	+1	known	silent	c.1110	p.P370	0.000	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT1	HGNC	ENSG00000187210				118	0	0	48	26	35.1351
PRUNE2	0	genome.wustl.edu	37	9	79318668	79318668	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	79318668	79318668	T	C	SNP	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	missense	c.6784	p.R2262G	0.182	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				63	0	0	31	16	34.0426
GNA14	0	genome.wustl.edu	37	9	80046280	80046280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	80046280	80046280	C	T	SNP	GNA14	ENST00000341700	human	ensembl	74_37	-1	known	missense	c.550	p.G184S	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA14	HGNC	ENSG00000156049				132	0	0	54	22	28.9474
SPATA31D5P	0	genome.wustl.edu	37	9	84531633	84531633	+	RNA	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	84531633	84531633	T	C	SNP	SPATA31D5P	ENST00000527857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA31D5P	HGNC	ENSG00000240632				105	0	0	46	4	8
C9orf170	0	genome.wustl.edu	37	9	89771628	89771628	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	89771628	89771628	C	T	SNP	C9orf170	ENST00000375941	human	ensembl	74_37	+1	known	silent	c.309	p.N103	0.000	NULL	NULL	-	no_errors	C9orf170	HGNC	ENSG00000204446				105	0	0	38	18	32.1429
CDK20	0	genome.wustl.edu	37	9	90585538	90585538	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	90585538	90585538	G	A	SNP	CDK20	ENST00000325303	human	ensembl	74_37	-1	known	nonsense	c.508	p.R170*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK20	HGNC	ENSG00000156345				53	0	0	22	9	29.0323
SEMA4D	0	genome.wustl.edu	37	9	92008486	92008486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	92008486	92008486	C	T	SNP	SEMA4D	ENST00000356444	human	ensembl	74_37	-1	known	missense	c.499	p.V167I	0.992	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764				115	1	0.862069	32	18	36
SYK	0	genome.wustl.edu	37	9	93607755	93607755	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	93607755	93607755	C	T	SNP	SYK	ENST00000375746	human	ensembl	74_37	+1	known	nonsense	c.457	p.Q153*	0.998	pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025				91	0	0	33	22	40
BICD2	0	genome.wustl.edu	37	9	95482663	95482663	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	95482663	95482663	C	T	SNP	BICD2	ENST00000356884	human	ensembl	74_37	-1	known	silent	c.981	p.P327	0.050	pfam_Bicaudal-D_microtubule-assoc	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963				135	0	0	43	17	28.3333
FGD3	0	genome.wustl.edu	37	9	95765277	95765277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	95765277	95765277	G	A	SNP	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	missense	c.524	p.R175Q	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				255	0	0	79	40	33.6134
SUSD3	0	genome.wustl.edu	37	9	95841807	95841807	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	95841807	95841807	C	T	SNP	SUSD3	ENST00000375472	human	ensembl	74_37	+1	known	silent	c.480	p.A160	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD3	HGNC	ENSG00000157303				92	0	0	28	22	44
C9orf129	0	genome.wustl.edu	37	9	96097854	96097854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	96097854	96097854	G	A	SNP	C9orf129	ENST00000375419	human	ensembl	74_37	-1	known	missense	c.167	p.T56M	0.974	NULL	NULL	-	no_errors	C9orf129	HGNC	ENSG00000204352				53	0	0	11	7	38.8889
PHF2	0	genome.wustl.edu	37	9	96439875	96439875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	96439875	96439875	C	T	SNP	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	missense	c.3208	p.R1070C	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				413	0	0	99	31	23.8462
WWC3	0	genome.wustl.edu	37	X	10078029	10078029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	10078029	10078029	C	T	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.943	p.R315W	0.821	NULL	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				74	0	0	25	16	39.0244
NXF5	0	genome.wustl.edu	37	X	101095825	101095825	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	101095825	101095825	C	A	SNP	NXF5	ENST00000263032	human	ensembl	74_37	-1	known	missense	c.523	p.D175Y	1.000	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952				141	0	0	62	31	33.3333
TCEAL5	0	genome.wustl.edu	37	X	102529304	102529304	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	102529304	102529304	T	G	SNP	TCEAL5	ENST00000372680	human	ensembl	74_37	-1	known	missense	c.188	p.E63A	0.023	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL5	HGNC	ENSG00000204065				210	0	0	80	39	32.7731
PLP1	0	genome.wustl.edu	37	X	103041611	103041611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	103041611	103041611	C	T	SNP	PLP1	ENST00000303958	human	ensembl	74_37	+1	known	missense	c.409	p.R137W	1.000	pfam_Myelin_PLP,prints_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	PLP1	HGNC	ENSG00000123560				388	0	0	88	56	38.8889
NRK	0	genome.wustl.edu	37	X	105181436	105181436	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	105181436	105181436	A	G	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	missense	c.3664	p.N1222D	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				30	0	0	16	12	42.8571
RNF128	0	genome.wustl.edu	37	X	105970349	105970349	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	105970349	105970349	G	A	SNP	RNF128	ENST00000255499	human	ensembl	74_37	+1	known	missense	c.206	p.G69D	1.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135				39	0	0	19	16	45.7143
RNF128	0	genome.wustl.edu	37	X	105970426	105970426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	105970426	105970426	G	A	SNP	RNF128	ENST00000255499	human	ensembl	74_37	+1	known	missense	c.283	p.A95T	0.996	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135				74	0	0	21	22	51.1628
ATG4A	0	genome.wustl.edu	37	X	107372043	107372043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	107372043	107372043	C	T	SNP	ATG4A	ENST00000372232	human	ensembl	74_37	+1	known	missense	c.154	p.R52C	1.000	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4A	HGNC	ENSG00000101844				94	0	0	38	24	38.7097
IRS4	0	genome.wustl.edu	37	X	107977352	107977352	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	107977352	107977352	T	C	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	silent	c.2223	p.R741	0.038	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				224	0	0	117	49	29.5181
AMMECR1	0	genome.wustl.edu	37	X	109507781	109507781	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	109507781	109507781	C	A	SNP	AMMECR1	ENST00000262844	human	ensembl	74_37	-1	known	nonsense	c.520	p.G174*	1.000	pfam_AMMECR1_domain,superfamily_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	pfam_AMMECR1_domain,superfamily_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	-	no_errors	AMMECR1	HGNC	ENSG00000101935				273	0	0	110	56	33.7349
TRPC5	0	genome.wustl.edu	37	X	111195319	111195319	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	111195319	111195319	G	A	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	silent	c.330	p.G110	0.048	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				270	1	0.369004	108	71	39.6648
NKRF	0	genome.wustl.edu	37	X	118724034	118724034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	118724034	118724034	C	T	SNP	NKRF	ENST00000542113	human	ensembl	74_37	-1	known	missense	c.1399	p.V467M	0.994	smart_dsRNA-bd_dom	pfam_G_patch_dom,pfam_R3H_ss-bd,smart_dsRNA-bd_dom,smart_G_patch_dom,smart_R3H_ss-bd,pfscan_G_patch_dom,pfscan_R3H_ss-bd	-	no_errors	NKRF	HGNC	ENSG00000186416				168	0	0	109	66	37.7143
GRIA3	0	genome.wustl.edu	37	X	122537368	122537368	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	122537368	122537368	C	T	SNP	GRIA3	ENST00000264357	human	ensembl	74_37	+1	known	silent	c.1291	p.L431	1.000	smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA3	HGNC	ENSG00000125675				235	0	0	98	43	30.4965
TENM1	0	genome.wustl.edu	37	X	123514832	123514832	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	123514832	123514832	G	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.7753	p.L2585I	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				192	0	0	124	12	8.82353
IGSF1	0	genome.wustl.edu	37	X	130417039	130417039	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	130417039	130417039	T	C	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	silent	c.867	p.Q289	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				141	0	0	76	42	35.5932
FAM122C	0	genome.wustl.edu	37	X	133941488	133941488	+	RNA	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	133941488	133941488	A	G	SNP	FAM122C	ENST00000470657	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	FAM122C	HGNC	ENSG00000156500				33	0	0	21	6	22.2222
GPR112	0	genome.wustl.edu	37	X	135430010	135430010	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	135430010	135430010	G	T	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.4145	p.S1382I	0.128	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				392	0	0	116	88	43.1373
GPR101	0	genome.wustl.edu	37	X	136113044	136113044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	136113044	136113044	G	A	SNP	GPR101	ENST00000298110	human	ensembl	74_37	-1	known	missense	c.790	p.R264C	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370				368	0	0	152	61	28.6385
SLITRK2	0	genome.wustl.edu	37	X	144906227	144906227	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	144906227	144906227	C	T	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	nonsense	c.2284	p.R762*	1.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				411	0	0	116	55	32.1637
FMR1	0	genome.wustl.edu	37	X	147009866	147009866	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	147009866	147009866	G	A	SNP	FMR1	ENST00000370475	human	ensembl	74_37	+1	known	silent	c.225	p.E75	0.998	pfam_Agenet-like_dom	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081				376	0	0	145	50	25.641
IL3RA	0	genome.wustl.edu	37	X	1471219	1471219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	1471219	1471219	C	T	SNP	IL3RA	ENST00000331035	human	ensembl	74_37	+1	known	missense	c.436	p.R146C	0.000	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL3RA	HGNC	ENSG00000185291				523	1	0.19084	131	82	38.4977
MAGEA8	0	genome.wustl.edu	37	X	149013071	149013071	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	149013071	149013071	C	T	SNP	MAGEA8	ENST00000286482	human	ensembl	74_37	+1	known	missense	c.25	p.R9C	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA8	HGNC	ENSG00000156009				37	0	0	14	2	12.5
GPR50	0	genome.wustl.edu	37	X	150345310	150345310	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	150345310	150345310	C	T	SNP	GPR50	ENST00000218316	human	ensembl	74_37	+1	known	silent	c.117	p.I39	0.998	pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mel_rcpt_1X,prints_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195				293	0	0	84	52	38.2353
GPR50	0	genome.wustl.edu	37	X	150349306	150349306	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	150349306	150349306	C	T	SNP	GPR50	ENST00000218316	human	ensembl	74_37	+1	known	silent	c.1251	p.H417	0.001	prints_Mel_rcpt_1X	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mel_rcpt_1X,prints_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195				559	0	0	167	101	37.6866
VMA21	0	genome.wustl.edu	37	X	150573618	150573618	+	RNA	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	150573618	150573618	G	A	SNP	VMA21	ENST00000477649	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	VMA21	HGNC	ENSG00000160131				15	0	0	8	6	42.8571
PLXNB3	0	genome.wustl.edu	37	X	153033730	153033730	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	153033730	153033730	C	T	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	silent	c.1182	p.G394	0.009	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				254	0	0	50	18	26.4706
PLXNB3	0	genome.wustl.edu	37	X	153040511	153040511	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	153040511	153040511	C	G	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	missense	c.4177	p.L1393V	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				93	0	0	22	13	37.1429
FLNA	0	genome.wustl.edu	37	X	153593586	153593586	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	153593586	153593586	C	T	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.1609	p.V537M	0.937	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				286	0	0	61	43	41.3462
FLNA	0	genome.wustl.edu	37	X	153599571	153599571	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	153599571	153599571	C	T	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.43	p.A15T	1.000	NULL	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				27	0	0	10	6	37.5
PLXNA3	0	genome.wustl.edu	37	X	153694980	153694980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	153694980	153694980	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	missense	c.2951	p.A984V	0.936	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				35	0	0	11	5	31.25
MPP1	0	genome.wustl.edu	37	X	154020565	154020565	+	RNA	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	154020565	154020565	C	A	SNP	MPP1	ENST00000488694	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MPP1	HGNC	ENSG00000130830				140	0	0	53	16	23.1884
FUNDC2	0	genome.wustl.edu	37	X	154280049	154280049	+	Silent	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	154280049	154280049	T	C	SNP	FUNDC2	ENST00000369498	human	ensembl	74_37	+1	known	silent	c.465	p.P155	0.052	pfam_FUN14	pfam_FUN14	-	no_errors	FUNDC2	HGNC	ENSG00000165775				109	0	0	36	19	34.5455
BRCC3	0	genome.wustl.edu	37	X	154348417	154348417	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	154348417	154348417	C	G	SNP	BRCC3	ENST00000399042	human	ensembl	74_37	+1	known	missense	c.946	p.L316V	0.988	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	BRCC3	HGNC	ENSG00000185515				264	0	0	86	44	33.8462
P2RY8	0	genome.wustl.edu	37	X	1585026	1585026	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	1585026	1585026	G	A	SNP	P2RY8	ENST00000381297	human	ensembl	74_37	-1	known	silent	c.426	p.A142	0.051	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	P2RY8	HGNC	ENSG00000182162				35	0	0	7	6	46.1538
GRPR	0	genome.wustl.edu	37	X	16170715	16170715	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	16170715	16170715	G	A	SNP	GRPR	ENST00000380289	human	ensembl	74_37	+1	known	missense	c.1102	p.V368M	0.297	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Bombsn_rcpt,prints_Gastrin_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GRPR	HGNC	ENSG00000126010				400	0	0	127	92	42.0091
MAP3K15	0	genome.wustl.edu	37	X	19389099	19389099	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	19389099	19389099	G	A	SNP	MAP3K15	ENST00000338883	human	ensembl	74_37	-1	known	silent	c.3378	p.A1126	0.538	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815				197	0	0	48	33	40.7407
SH3KBP1	0	genome.wustl.edu	37	X	19725094	19725094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	19725094	19725094	G	A	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	missense	c.295	p.R99W	0.999	superfamily_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				72	0	0	27	20	42.5532
DHRSX	0	genome.wustl.edu	37	X	2343243	2343243	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	2343243	2343243	A	G	SNP	DHRSX	ENST00000334651	human	ensembl	74_37	-1	known	missense	c.212	p.I71T	0.994	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRSX	HGNC	ENSG00000169084				195	0	0	56	50	47.1698
ZFX	0	genome.wustl.edu	37	X	24228818	24228818	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	24228818	24228818	C	T	SNP	ZFX	ENST00000540034	human	ensembl	74_37	+1	known	silent	c.1860	p.C620	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889				187	0	0	103	46	30.8725
PDK3	0	genome.wustl.edu	37	X	24483604	24483604	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	24483604	24483604	C	T	SNP	PDK3	ENST00000441463	human	ensembl	74_37	+1	known	missense	c.32	p.P11L	1.000	superfamily_BCDHK/PDK_N	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK3	HGNC	ENSG00000067992				61	0	0	14	7	33.3333
IL1RAPL1	0	genome.wustl.edu	37	X	29301173	29301173	+	Silent	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	29301173	29301173	C	T	SNP	IL1RAPL1	ENST00000302196	human	ensembl	74_37	+1	known	silent	c.201	p.A67	0.995	smart_Ig_sub,pfscan_Ig-like_dom	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306				112	0	0	73	40	35.3982
MXRA5	0	genome.wustl.edu	37	X	3235851	3235851	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	3235851	3235851	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.5871	p.Y1957	0.970	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				117	0	0	55	33	37.5
FAM47A	0	genome.wustl.edu	37	X	34148467	34148467	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	34148467	34148467	C	A	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	missense	c.1929	p.K643N	0.000	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				131	1	0.757576	66	36	35.2941
CHST7	0	genome.wustl.edu	37	X	46433917	46433917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	46433917	46433917	C	T	SNP	CHST7	ENST00000276055	human	ensembl	74_37	+1	known	missense	c.551	p.T184M	0.060	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST7	HGNC	ENSG00000147119				48	0	0	19	10	34.4828
SLC9A7	0	genome.wustl.edu	37	X	46541838	46541838	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	46541838	46541838	T	C	SNP	SLC9A7	ENST00000328306	human	ensembl	74_37	-1	known	missense	c.458	p.Y153C	1.000	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923				105	0	0	57	30	34.4828
SSX4	0	genome.wustl.edu	37	X	48244824	48244824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	48244824	48244824	G	A	SNP	SSX4	ENST00000376886	human	ensembl	74_37	+1	known	missense	c.215	p.R72H	0.169	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX4	HGNC	ENSG00000204645				22	0	0	14	7	33.3333
WAS	0	genome.wustl.edu	37	X	48547416	48547416	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	48547416	48547416	G	A	SNP	WAS	ENST00000376701	human	ensembl	74_37	+1	known	silent	c.1299	p.A433	0.260	pfam_WH2_dom,superfamily_WASP_C,smart_WH2_dom,pfscan_WH2_dom	pfam_WH1/EVH1,pfam_CRIB_dom,pfam_WH2_dom,superfamily_WASP_C,smart_WH1/EVH1,smart_CRIB_dom,smart_WH2_dom,pfscan_CRIB_dom,pfscan_WH1/EVH1,pfscan_WH2_dom	-	no_errors	WAS	HGNC	ENSG00000015285				44	0	0	12	8	40
CACNA1F	0	genome.wustl.edu	37	X	49083447	49083447	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	49083447	49083447	C	T	SNP	CACNA1F	ENST00000376265	human	ensembl	74_37	-1	known	missense	c.1261	p.A421T	0.002	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001				98	0	0	23	9	28.125
SHROOM4	0	genome.wustl.edu	37	X	50377325	50377325	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	50377325	50377325	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	missense	c.1748	p.R583Q	0.997	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352				90	0	0	42	14	25
SHROOM4	0	genome.wustl.edu	37	X	50557009	50557009	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	50557009	50557009	G	A	SNP	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	missense	c.10	p.R4W	1.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352				47	0	0	5	7	58.3333
IQSEC2	0	genome.wustl.edu	37	X	53285133	53285133	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	53285133	53285133	C	G	SNP	IQSEC2	ENST00000396435	human	ensembl	74_37	-1	known	missense	c.848	p.G283A	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_P-loop_NTPase,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC2	HGNC	ENSG00000124313				36	0	0	10	5	33.3333
HUWE1	0	genome.wustl.edu	37	X	53573484	53573484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	53573484	53573484	G	A	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.10828	p.R3610W	0.992	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				45	0	0	14	12	46.1538
PHF8	0	genome.wustl.edu	37	X	54026320	54026320	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	54026320	54026320	C	A	SNP	PHF8	ENST00000357988	human	ensembl	74_37	-1	known	missense	c.1324	p.A442S	0.998	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943				43	0	0	25	12	32.4324
WNK3	0	genome.wustl.edu	37	X	54263784	54263784	+	Silent	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	54263784	54263784	G	T	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	silent	c.4215	p.T1405	0.552	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				82	0	0	43	29	40.2778
WNK3	0	genome.wustl.edu	37	X	54275765	54275765	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	54275765	54275765	G	T	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	missense	c.3016	p.P1006T	0.547	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				110	0	0	47	23	32.8571
ZXDB	0	genome.wustl.edu	37	X	57618747	57618747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	57618747	57618747	G	A	SNP	ZXDB	ENST00000374888	human	ensembl	74_37	+1	known	missense	c.266	p.G89D	0.965	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDB	HGNC	ENSG00000198455				57	0	0	5	9	64.2857
ZXDB	0	genome.wustl.edu	37	X	57620179	57620179	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	57620179	57620179	G	A	SNP	ZXDB	ENST00000374888	human	ensembl	74_37	+1	known	silent	c.1698	p.T566	0.987	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDB	HGNC	ENSG00000198455				130	0	0	53	40	43.0108
HEPH	0	genome.wustl.edu	37	X	65486430	65486430	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	65486430	65486430	G	A	SNP	HEPH	ENST00000519389	human	ensembl	74_37	+1	known	nonsense	c.3555	p.W1185*	0.979	NULL	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472				131	0	0	55	25	31.25
ZMYM3	0	genome.wustl.edu	37	X	70469892	70469892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	70469892	70469892	C	T	SNP	ZMYM3	ENST00000373988	human	ensembl	74_37	-1	known	missense	c.1241	p.C414Y	1.000	pfam_Znf_MYM,smart_TRASH_dom	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM3	HGNC	ENSG00000147130				66	0	0	27	10	27.027
NONO	0	genome.wustl.edu	37	X	70516763	70516763	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	70516763	70516763	G	A	SNP	NONO	ENST00000276079	human	ensembl	74_37	+1	known	missense	c.809	p.R270H	1.000	pfam_NOPS	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NONO	HGNC	ENSG00000147140				88	0	0	30	16	34.7826
PHKA1	0	genome.wustl.edu	37	X	71829541	71829541	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	71829541	71829541	G	C	SNP	PHKA1	ENST00000373539	human	ensembl	74_37	-1	known	missense	c.2539	p.L847V	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177				226	0	0	86	46	34.8485
NAP1L2	0	genome.wustl.edu	37	X	72434188	72434188	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	72434188	72434188	G	A	SNP	NAP1L2	ENST00000373517	human	ensembl	74_37	-1	known	silent	c.141	p.C47	0.006	NULL	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462				108	0	0	53	25	32.0513
XIST	0	genome.wustl.edu	37	X	73066346	73066346	+	RNA	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	73066346	73066346	A	G	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				284	0	0	89	46	34.0741
KIAA2022	0	genome.wustl.edu	37	X	73961406	73961406	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	73961406	73961406	T	C	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.2986	p.M996V	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				114	0	0	50	29	36.7089
MAGEE1	0	genome.wustl.edu	37	X	75649451	75649451	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	75649451	75649451	G	A	SNP	MAGEE1	ENST00000361470	human	ensembl	74_37	+1	known	silent	c.1128	p.S376	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934				61	0	0	19	15	44.1176
ATRX	0	genome.wustl.edu	37	X	76939711	76939711	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	76939711	76939711	A	G	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.1037	p.L346P	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				122	0	0	147	10	6.36943
MAGT1	0	genome.wustl.edu	37	X	77150868	77150868	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	77150868	77150868	T	C	SNP	MAGT1	ENST00000358075	human	ensembl	74_37	-1	known	missense	c.136	p.M46V	0.000	NULL	pfam_OligosaccharylTrfase_OST3/OST6,superfamily_Thioredoxin-like_fold	-	no_errors	MAGT1	HGNC	ENSG00000102158				66	0	0	24	9	27.2727
SATL1	0	genome.wustl.edu	37	X	84362915	84362915	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	84362915	84362915	G	A	SNP	SATL1	ENST00000509231	human	ensembl	74_37	-1	known	nonsense	c.1060	p.R354*	0.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788				116	0	0	45	19	29.6875
TGIF2LX	0	genome.wustl.edu	37	X	89177108	89177108	+	Silent	SNP	G	G	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	89177108	89177108	G	A	SNP	TGIF2LX	ENST00000283891	human	ensembl	74_37	+1	known	silent	c.24	p.P8	0.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF2LX	HGNC	ENSG00000153779				150	0	0	50	29	36.7089
CDC14A	0	genome.wustl.edu	37	1	100889837	100889837	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	100889837	100889837	C	-	DEL	CDC14A	ENST00000361544	human	ensembl	74_37	+1	known	frame_shift_del	c.369	p.Y126fs	0.021	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335				146	0	0	68	21	23.5955
PRPF38B	0	genome.wustl.edu	37	1	109242456	109242456	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	109242456	109242456	A	-	DEL	PRPF38B	ENST00000370025	human	ensembl	74_37	+1	known	frame_shift_del	c.1455	p.K487fs	0.995	NULL	pfam_PRP38	-	no_errors	PRPF38B	HGNC	ENSG00000134186				237	0	0	82	38	31.6667
SLC16A4	0	genome.wustl.edu	37	1	110906427	110906427	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	110906427	110906427	A	-	DEL	SLC16A4	ENST00000369779	human	ensembl	74_37	-1	known	frame_shift_del	c.1425	p.F475fs	0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679				133	0	0	50	28	35.8974
FAM212B	0	genome.wustl.edu	37	1	112269925	112269925	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	112269925	112269925	C	-	DEL	FAM212B	ENST00000357260	human	ensembl	74_37	-1	known	frame_shift_del	c.559	p.A187fs	0.001	NULL	NULL	-	no_errors	FAM212B	HGNC	ENSG00000197852				209	2	0.947867	65	30	31.5789
TTF2	0	genome.wustl.edu	37	1	117633229	117633229	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	117633229	117633229	T	-	DEL	TTF2	ENST00000369466	human	ensembl	74_37	+1	known	frame_shift_del	c.2572	p.F859fs	0.999	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830				102	0	0	57	20	25.974
VPS45	0	genome.wustl.edu	37	1	150082564	150082564	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	150082564	150082564	T	-	DEL	VPS45	ENST00000484306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631				40	0	0	32	11	25.5814
SETDB1	0	genome.wustl.edu	37	1	150917623	150917624	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	150917623	150917624	-	GG	INS	SETDB1	ENST00000368962	human	ensembl	74_37	+1	known	frame_shift_ins	c.1179_1180	p.T396fs	0.000:0.000	NULL	smart_Tudor	-	no_errors	SETDB1	HGNC	ENSG00000143379				43	0	0	11	2	15.3846
ENSG00000231064	0	genome.wustl.edu	37	1	155174830	155174831	+	RNA	DEL	CA	CA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	155174830	155174831	CA	-	DEL	ENSG00000231064	ENST00000422665	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-263K19.4	Clone_based_vega_gene	ENSG00000231064				56	0	0	24	14	36.8421
FCRL3	0	genome.wustl.edu	37	1	157666960	157666960	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	157666960	157666960	T	-	DEL	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	frame_shift_del	c.814	p.R272fs	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856				100	0	0	50	23	31.5068
NDUFS2	0	genome.wustl.edu	37	1	161184004	161184004	+	RNA	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	161184004	161184004	C	-	DEL	NDUFS2	ENST00000465923	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NDUFS2	HGNC	ENSG00000158864				53	0	0	20	4	16.6667
SLC19A2	0	genome.wustl.edu	37	1	169446550	169446552	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	169446550	169446552	AAG	-	DEL	SLC19A2	ENST00000236137	human	ensembl	74_37	-1	known	in_frame_del	c.650_648	p.F217in_frame_del	1.000:1.000:1.000	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier	-	no_errors	SLC19A2	HGNC	ENSG00000117479				165	0	0	47	25	34.7222
SEC16B	0	genome.wustl.edu	37	1	177927333	177927333	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	177927333	177927333	G	-	DEL	SEC16B	ENST00000308284	human	ensembl	74_37	-1	known	frame_shift_del	c.1299	p.S434fs	0.033	NULL	NULL	-	no_errors	SEC16B	HGNC	ENSG00000120341				60	0	0	43	13	23.2143
KIAA1614	0	genome.wustl.edu	37	1	180904705	180904705	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	180904705	180904705	C	-	DEL	KIAA1614	ENST00000367588	human	ensembl	74_37	+1	known	frame_shift_del	c.1660	p.V556fs	0.000	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835				34	0	0	10	9	47.3684
RGS21	0	genome.wustl.edu	37	1	192335245	192335245	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	192335245	192335245	T	-	DEL	RGS21	ENST00000417209	human	ensembl	74_37	+1	known	frame_shift_del	c.450	p.L152fs	0.995	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS21	HGNC	ENSG00000253148				76	0	0	37	8	17.7778
ENSG00000230260	0	genome.wustl.edu	37	1	197411573	197411573	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	197411573	197411573	A	-	DEL	ENSG00000230260	ENST00000422250	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-75C23.1	Clone_based_vega_gene	ENSG00000230260				22	0	0	20	5	20
LGR6	0	genome.wustl.edu	37	1	202288157	202288157	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	202288157	202288157	C	-	DEL	LGR6	ENST00000367278	human	ensembl	74_37	+1	known	frame_shift_del	c.2726	p.R911fs	0.000	NULL	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067				165	0	0	43	16	27.1186
PLEKHA6	0	genome.wustl.edu	37	1	204228411	204228411	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	204228411	204228411	C	-	DEL	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	frame_shift_del	c.982	p.V328fs	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				134	0	0	40	21	34.4262
CR2	0	genome.wustl.edu	37	1	207642044	207642044	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	207642044	207642044	C	-	DEL	CR2	ENST00000367057	human	ensembl	74_37	+1	known	frame_shift_del	c.618	p.T209fs	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322				273	0	0	123	45	26.7857
LAMB3	0	genome.wustl.edu	37	1	209797293	209797295	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	209797293	209797295	ACA	-	DEL	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	in_frame_del	c.2029_2027	p.L676in_frame_del	0.304:0.034:0.003	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878				199	0	0	44	19	30.1587
ANGEL2	0	genome.wustl.edu	37	1	213180442	213180445	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	213180442	213180445	AAAA	-	DEL	ANGEL2	ENST00000460337	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007:0.006:0.011:0.009	-	-	-	no_errors	ANGEL2	HGNC	ENSG00000174606				95	0	0	48	15	23.8095
TP53BP2	0	genome.wustl.edu	37	1	223971921	223971923	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	223971921	223971923	CTT	-	DEL	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	in_frame_del	c.3259_3257	p.E1086in_frame_del	1.000:1.000:1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514				239	0	0	120	47	28.1437
TMEM57	0	genome.wustl.edu	37	1	25775375	25775375	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	25775375	25775375	T	-	DEL	TMEM57	ENST00000374343	human	ensembl	74_37	+1	known	frame_shift_del	c.299	p.F102fs	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178				100	0	0	50	16	24.2424
ARID1A	0	genome.wustl.edu	37	1	27102120	27102121	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	27102120	27102121	AG	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.5046_5047	p.S1684fs	0.997:1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				61	0	0	21	21	50
HPCA	0	genome.wustl.edu	37	1	33363925	33363925	+	RNA	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	33363925	33363925	G	-	DEL	HPCA	ENST00000470896	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HPCA	HGNC	ENSG00000121905				85	0	0	20	9	31.0345
ZMYM6	0	genome.wustl.edu	37	1	35484912	35484912	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	35484912	35484912	A	-	DEL	ZMYM6	ENST00000317538	human	ensembl	74_37	-1	novel	frame_shift_del	c.470	p.L157fs	0.001	NULL	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM6	HGNC	ENSG00000163867				128	1	0.775194	20	55	73.3333
MAP7D1	0	genome.wustl.edu	37	1	36643530	36643530	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	36643530	36643530	C	-	DEL	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	frame_shift_del	c.1436	p.C481fs	1.000	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				191	0	0	37	34	47.8873
MEAF6	0	genome.wustl.edu	37	1	37961494	37961495	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	37961494	37961495	-	T	INS	MEAF6	ENST00000373075	human	ensembl	74_37	-1	known	frame_shift_ins	c.589_588	p.P196fs	1.000:1.000	NULL	pfam_Hist_AcTrfase_NuA4_cplx	-	no_errors	MEAF6	HGNC	ENSG00000163875				168	0	0	78	16	17.0213
HIVEP3	0	genome.wustl.edu	37	1	42050121	42050121	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	42050121	42050121	C	-	DEL	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	frame_shift_del	c.348	p.S117fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				336	0	0	120	8	6.25
PHF13	0	genome.wustl.edu	37	1	6680069	6680071	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	6680069	6680071	GAA	-	DEL	PHF13	ENST00000377648	human	ensembl	74_37	+1	known	in_frame_del	c.348_350	p.K120in_frame_del	0.998:1.000:1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF13	HGNC	ENSG00000116273				172	0	0	57	14	19.7183
SGIP1	0	genome.wustl.edu	37	1	67099769	67099769	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	67099769	67099769	A	-	DEL	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	frame_shift_del	c.106	p.K38fs	0.997	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				22	0	0	11	3	21.4286
CAMTA1	0	genome.wustl.edu	37	1	7724998	7724998	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	7724998	7724998	G	-	DEL	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	frame_shift_del	c.2391	p.D799fs	0.981	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				597	0	0	177	84	32.1839
RERE	0	genome.wustl.edu	37	1	8418586	8418586	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	8418586	8418586	G	-	DEL	RERE	ENST00000337907	human	ensembl	74_37	-1	known	frame_shift_del	c.4009	p.L1337fs	1.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				49	0	0	6	14	70
TTLL7	0	genome.wustl.edu	37	1	84335593	84335594	+	RNA	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	84335593	84335594	-	A	INS	TTLL7	ENST00000472688	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	TTLL7	HGNC	ENSG00000137941				53	0	0	42	11	20.7547
SSX2IP	0	genome.wustl.edu	37	1	85130170	85130170	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	85130170	85130170	T	-	DEL	SSX2IP	ENST00000342203	human	ensembl	74_37	-1	known	frame_shift_del	c.603	p.E202fs	1.000	pfam_Afadin/alpha-actinin-bd	pfam_Afadin/alpha-actinin-bd	-	no_errors	SSX2IP	HGNC	ENSG00000117155				100	0	0	81	50	38.1679
BARHL2	0	genome.wustl.edu	37	1	91182376	91182377	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	91182376	91182377	-	G	INS	BARHL2	ENST00000370445	human	ensembl	74_37	-1	known	frame_shift_ins	c.377_376	p.Q126fs	0.999:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	BARHL2	HGNC	ENSG00000143032				13	0	0	6	3	33.3333
ZNF644	0	genome.wustl.edu	37	1	91382293	91382293	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	91382293	91382293	A	-	DEL	ZNF644	ENST00000467231	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF644	HGNC	ENSG00000122482				35	0	0	21	5	19.2308
LPPR5	0	genome.wustl.edu	37	1	99470032	99470033	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	1	99470032	99470033	-	G	INS	LPPR5	ENST00000263177	human	ensembl	74_37	-1	known	frame_shift_ins	c.196_195	p.V65fs	0.999:0.837	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR5	Uniprot_gn	ENSG00000117598				51	0	0	24	9	27.2727
GBF1	0	genome.wustl.edu	37	10	104120909	104120909	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	104120909	104120909	A	-	DEL	GBF1	ENST00000476019	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GBF1	HGNC	ENSG00000107862				80	0	0	44	13	22.807
ADD3	0	genome.wustl.edu	37	10	111893350	111893350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	111893350	111893350	A	-	DEL	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.K701fs	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				251	2	0.790514	88	33	27.2727
FAM45A	0	genome.wustl.edu	37	10	120892208	120892208	+	RNA	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	120892208	120892208	G	-	DEL	FAM45A	ENST00000462327	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM45A	HGNC	ENSG00000119979				46	0	0	37	14	27.451
TIAL1	0	genome.wustl.edu	37	10	121338303	121338303	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	121338303	121338303	C	-	DEL	TIAL1	ENST00000369093	human	ensembl	74_37	-1	known	frame_shift_del	c.542	p.G181fs	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIAL1	HGNC	ENSG00000151923				71	0	0	38	6	13.6364
C10orf88	0	genome.wustl.edu	37	10	124711510	124711510	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	124711510	124711510	T	-	DEL	C10orf88	ENST00000481909	human	ensembl	74_37	-1	known	frame_shift_del	c.401	p.N134fs	0.704	NULL	NULL	-	no_errors	C10orf88	HGNC	ENSG00000119965				46	0	0	13	6	31.5789
MKI67	0	genome.wustl.edu	37	10	129913974	129913974	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	129913974	129913974	T	-	DEL	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	frame_shift_del	c.698	p.N233fs	0.003	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				73	0	0	56	9	13.8462
CUBN	0	genome.wustl.edu	37	10	17113854	17113854	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	17113854	17113854	T	-	DEL	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	frame_shift_del	c.2418	p.A807fs	0.168	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				110	0	0	61	31	33.6957
C10orf25	0	genome.wustl.edu	37	10	45496243	45496243	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	45496243	45496243	G	-	DEL	C10orf25	ENST00000298298	human	ensembl	74_37	-1	known	frame_shift_del	c.65	p.P22fs	0.000	NULL	NULL	-	no_errors	C10orf25	HGNC	ENSG00000165511				44	0	0	20	7	25.9259
AKR1E2	0	genome.wustl.edu	37	10	4889693	4889694	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	4889693	4889694	AA	-	DEL	AKR1E2	ENST00000298375	human	ensembl	74_37	+1	known	frame_shift_del	c.934_935	p.K312fs	1.000:1.000	superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1E2	HGNC	ENSG00000165568				118	0	0	68	7	9.33333
MAPK8	0	genome.wustl.edu	37	10	49613018	49613019	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	49613018	49613019	-	A	INS	MAPK8	ENST00000360332	human	ensembl	74_37	+1	known	frame_shift_ins	c.246_247	p.N83fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_JNK	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_JNK	-	no_errors	MAPK8	HGNC	ENSG00000107643				63	0	0	30	13	30.2326
PCDH15	0	genome.wustl.edu	37	10	55581491	55581491	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	55581491	55581491	A	-	DEL	PCDH15	ENST00000463095	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.091	-	-	-	no_errors	PCDH15	HGNC	ENSG00000150275				27	0	0	15	11	42.3077
CCDC6	0	genome.wustl.edu	37	10	61665913	61665915	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	61665913	61665915	CTC	-	DEL	CCDC6	ENST00000263102	human	ensembl	74_37	-1	known	in_frame_del	c.270_268	p.E90in_frame_del	1.000:1.000:1.000	pfam_DUF2046	pfam_DUF2046	-	no_errors	CCDC6	HGNC	ENSG00000108091				173	0	0	44	28	38.8889
HERC4	0	genome.wustl.edu	37	10	69716603	69716604	+	RNA	DEL	AA	AA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	69716603	69716604	AA	-	DEL	HERC4	ENST00000480158	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HERC4	HGNC	ENSG00000148634				69	0	0	35	18	33.9623
TET1	0	genome.wustl.edu	37	10	70446283	70446284	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	70446283	70446284	-	A	INS	TET1	ENST00000373644	human	ensembl	74_37	+1	known	frame_shift_ins	c.5223_5224	p.R1743fs	0.420:0.727	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				198	0	0	84	24	22.2222
CHST3	0	genome.wustl.edu	37	10	73767317	73767317	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	73767317	73767317	G	-	DEL	CHST3	ENST00000373115	human	ensembl	74_37	+1	known	frame_shift_del	c.528	p.G178fs	0.047	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST3	HGNC	ENSG00000122863				47	0	0	11	4	26.6667
ANXA7	0	genome.wustl.edu	37	10	75135834	75135835	+	RNA	DEL	AA	AA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	75135834	75135835	AA	-	DEL	ANXA7	ENST00000463788	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.004	-	-	-	no_errors	ANXA7	HGNC	ENSG00000138279				15	0	0	0	7	100
FAM35A	0	genome.wustl.edu	37	10	88912390	88912390	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	88912390	88912390	A	-	DEL	FAM35A	ENST00000298786	human	ensembl	74_37	+1	known	frame_shift_del	c.1279	p.T429fs	0.445	NULL	NULL	-	no_errors	FAM35A	HGNC	ENSG00000122376				94	0	0	87	15	14.7059
LARP4B	0	genome.wustl.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	890939	890939	T	-	DEL	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.T163fs	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				127	0	0	69	22	24.1758
PTEN	0	genome.wustl.edu	37	10	89717770	89717770	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	89717770	89717770	A	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.795	p.K267fs	0.994	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				98	0	0	30	18	37.5
IFIT1	0	genome.wustl.edu	37	10	91163033	91163033	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	91163033	91163033	A	-	DEL	IFIT1	ENST00000371804	human	ensembl	74_37	+1	known	frame_shift_del	c.1001	p.K336fs	0.004	pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1	HGNC	ENSG00000185745				116	0	0	61	31	33.6957
CYP2C8	0	genome.wustl.edu	37	10	96827120	96827120	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	96827120	96827120	A	-	DEL	CYP2C8	ENST00000539050	human	ensembl	74_37	-1	known	frame_shift_del	c.68	p.L23fs	0.000	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP2C8	HGNC	ENSG00000138115				98	0	0	29	21	42
ENTPD1-AS1	0	genome.wustl.edu	37	10	97779109	97779109	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	97779109	97779109	A	-	DEL	ENTPD1-AS1	ENST00000458228	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ENTPD1-AS1	HGNC	ENSG00000226688				107	0	0	56	24	30
TM9SF3	0	genome.wustl.edu	37	10	98336475	98336475	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	98336475	98336475	T	-	DEL	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	frame_shift_del	c.214	p.S72fs	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				185	1	0.537634	114	46	28.75
RRP12	0	genome.wustl.edu	37	10	99125718	99125718	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	10	99125718	99125718	A	-	DEL	RRP12	ENST00000487612	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RRP12	HGNC	ENSG00000052749				66	0	0	34	14	29.1667
ATM	0	genome.wustl.edu	37	11	108178656	108178656	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	108178656	108178656	A	-	DEL	ATM	ENST00000278616	human	ensembl	74_37	+1	known	frame_shift_del	c.5707	p.K1904fs	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				70	0	0	38	13	25.4902
EXPH5	0	genome.wustl.edu	37	11	108409862	108409862	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	108409862	108409862	T	-	DEL	EXPH5	ENST00000265843	human	ensembl	74_37	-1	known	frame_shift_del	c.332	p.K111fs	0.064	NULL	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	-	no_errors	EXPH5	HGNC	ENSG00000110723				245	1	0.406504	101	33	24.6269
USP2	0	genome.wustl.edu	37	11	119243862	119243862	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	119243862	119243862	C	-	DEL	USP2	ENST00000260187	human	ensembl	74_37	-1	known	frame_shift_del	c.329	p.G110fs	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP2	HGNC	ENSG00000036672				380	1	0.262467	114	27	19.1489
NFRKB	0	genome.wustl.edu	37	11	129752496	129752496	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	129752496	129752496	T	-	DEL	NFRKB	ENST00000524794	human	ensembl	74_37	-1	known	frame_shift_del	c.1007	p.K336fs	1.000	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322				153	1	0.649351	68	22	24.4444
LDHA	0	genome.wustl.edu	37	11	18418442	18418442	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	18418442	18418442	C	-	DEL	LDHA	ENST00000540430	human	ensembl	74_37	+1	known	frame_shift_del	c.140	p.Q49fs	0.000	pirsf_L-lactate/malate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHA	HGNC	ENSG00000134333				163	0	0	82	40	32.7869
SPTY2D1	0	genome.wustl.edu	37	11	18638500	18638501	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	18638500	18638501	-	T	INS	SPTY2D1	ENST00000336349	human	ensembl	74_37	-1	known	frame_shift_ins	c.97_96	p.D32fs	1.000:1.000	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119				147	0	0	86	31	26.4957
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				101	0	0	35	18	33.9623
MED19	0	genome.wustl.edu	37	11	57472193	57472193	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	57472193	57472193	G	-	DEL	MED19	ENST00000431606	human	ensembl	74_37	-1	known	frame_shift_del	c.569	p.P190fs	1.000	pfam_Mediator_Med19_met,pfam_DNA-dir_RNA_pol1_su_RPA34	pfam_Mediator_Med19_met,pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	MED19	HGNC	ENSG00000156603				157	0	0	95	9	8.65385
UBXN1	0	genome.wustl.edu	37	11	62445075	62445075	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	62445075	62445075	G	-	DEL	UBXN1	ENST00000294119	human	ensembl	74_37	-1	known	frame_shift_del	c.566	p.P189fs	0.735	NULL	pfam_UBX,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_UBX,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_UBX	-	no_errors	UBXN1	HGNC	ENSG00000162191				184	0	0	59	29	32.9545
SLC3A2	0	genome.wustl.edu	37	11	62649529	62649529	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	62649529	62649529	A	-	DEL	SLC3A2	ENST00000377892	human	ensembl	74_37	+1	known	frame_shift_del	c.985	p.K331fs	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003				157	0	0	71	16	18.3908
HPX	0	genome.wustl.edu	37	11	6461701	6461701	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	6461701	6461701	A	-	DEL	HPX	ENST00000265983	human	ensembl	74_37	-1	known	frame_shift_del	c.210	p.F70fs	0.998	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat,pirsf_Hemopexin_chordata	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat,pirsf_Hemopexin_chordata	-	no_errors	HPX	HGNC	ENSG00000110169				223	0	0	63	39	38.2353
CORO1B	0	genome.wustl.edu	37	11	67209168	67209169	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	67209168	67209169	GG	-	DEL	CORO1B	ENST00000545016	human	ensembl	74_37	-1	known	frame_shift_del	c.490_489	p.H164fs	0.000:0.000	NULL	pfam_DUF1899,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1B	HGNC	ENSG00000172725				59	0	0	10	4	28.5714
ARHGEF17	0	genome.wustl.edu	37	11	73021526	73021527	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	73021526	73021527	-	C	INS	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	frame_shift_ins	c.1843_1844	p.G618fs	0.011:0.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				162	0	0	51	13	20.3125
RIC3	0	genome.wustl.edu	37	11	8159967	8159967	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	8159967	8159967	A	-	DEL	RIC3	ENST00000524799	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RIC3	HGNC	ENSG00000166405				71	0	0	33	49	59.7561
SYTL2	0	genome.wustl.edu	37	11	85468672	85468673	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	11	85468672	85468673	CT	-	DEL	SYTL2	ENST00000316356	human	ensembl	74_37	-1	known	frame_shift_del	c.97_96	p.R32fs	1.000:1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	-	no_errors	SYTL2	HGNC	ENSG00000137501				680	0	0	354	36	9.23077
SLC17A8	0	genome.wustl.edu	37	12	100774560	100774560	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	100774560	100774560	C	-	DEL	SLC17A8	ENST00000323346	human	ensembl	74_37	+1	known	frame_shift_del	c.183	p.P63fs	0.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A8	HGNC	ENSG00000179520				350	0	0	134	26	16.25
SBNO1	0	genome.wustl.edu	37	12	123805034	123805034	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	123805034	123805034	G	-	DEL	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	frame_shift_del	c.2612	p.P871fs	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697				199	0	0	96	41	29.927
PXMP2	0	genome.wustl.edu	37	12	133277870	133277870	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	133277870	133277870	G	-	DEL	PXMP2	ENST00000317479	human	ensembl	74_37	+1	known	frame_shift_del	c.434	p.G147fs	0.036	pfam_Mpv17_PMP22	pfam_Mpv17_PMP22	-	no_errors	PXMP2	HGNC	ENSG00000176894				268	0	0	130	11	7.80142
CACNA1C-AS1	0	genome.wustl.edu	37	12	2786184	2786184	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	2786184	2786184	A	-	DEL	CACNA1C-AS1	ENST00000501371	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.778	-	-	-	no_errors	CACNA1C-AS1	HGNC	ENSG00000246627				13	0	0	5	6	54.5455
CACNA1C	0	genome.wustl.edu	37	12	2797835	2797835	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	2797835	2797835	G	-	DEL	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	frame_shift_del	c.6220	p.G2075fs	0.129	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				107	0	0	28	12	30
LRRK2	0	genome.wustl.edu	37	12	40657646	40657647	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	40657646	40657647	-	A	INS	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	frame_shift_ins	c.1599_1600	p.Q535fs	0.018:0.012	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				193	0	0	97	28	22.4
KDM5A	0	genome.wustl.edu	37	12	416953	416953	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	416953	416953	T	-	DEL	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	frame_shift_del	c.3597	p.G1200fs	0.987	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614				179	1	0.555556	109	43	28.2895
DDN	0	genome.wustl.edu	37	12	49391527	49391529	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	49391527	49391529	CTC	-	DEL	DDN	ENST00000421952	human	ensembl	74_37	-1	known	in_frame_del	c.1132_1130	p.G377in_frame_del	0.029:0.020:0.021	NULL	NULL	-	no_errors	DDN	HGNC	ENSG00000181418				93	0	0	30	11	26.8293
TROAP	0	genome.wustl.edu	37	12	49717805	49717805	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	49717805	49717805	C	-	DEL	TROAP	ENST00000257909	human	ensembl	74_37	+1	known	frame_shift_del	c.322	p.P109fs	0.550	NULL	NULL	-	no_errors	TROAP	HGNC	ENSG00000135451				182	0	0	70	16	18.6047
LETMD1	0	genome.wustl.edu	37	12	51442249	51442249	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	51442249	51442249	G	-	DEL	LETMD1	ENST00000262055	human	ensembl	74_37	+1	known	frame_shift_del	c.110	p.A39fs	0.995	NULL	pfam_LETM1	-	no_errors	LETMD1	HGNC	ENSG00000050426				262	1	0.380228	77	38	33.0435
PCBP2	0	genome.wustl.edu	37	12	53856278	53856278	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	53856278	53856278	C	-	DEL	PCBP2	ENST00000603815	human	ensembl	74_37	+1	known	frame_shift_del	c.518	p.P175fs	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP2	HGNC	ENSG00000197111				121	0	0	33	12	26.6667
TESPA1	0	genome.wustl.edu	37	12	55356642	55356642	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	55356642	55356642	G	-	DEL	TESPA1	ENST00000316577	human	ensembl	74_37	-1	known	frame_shift_del	c.1040	p.P347fs	0.008	NULL	NULL	-	no_errors	TESPA1	HGNC	ENSG00000135426				55	0	0	23	14	37.8378
GDF11	0	genome.wustl.edu	37	12	56142524	56142524	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	56142524	56142524	A	-	DEL	GDF11	ENST00000257868	human	ensembl	74_37	+1	known	frame_shift_del	c.600	p.K201fs	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF11	HGNC	ENSG00000135414				149	0	0	62	14	18.4211
NACA	0	genome.wustl.edu	37	12	57106300	57106300	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	57106300	57106300	A	-	DEL	NACA	ENST00000548386	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.944	-	-	-	no_errors	NACA	HGNC	ENSG00000196531				142	1	0.699301	61	28	31.4607
NACA	0	genome.wustl.edu	37	12	57114418	57114418	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	57114418	57114418	G	-	DEL	NACA	ENST00000454682	human	ensembl	74_37	-1	known	frame_shift_del	c.896	p.P299fs	0.016	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACA	HGNC	ENSG00000196531				128	0	0	39	16	29.0909
MYO1A	0	genome.wustl.edu	37	12	57422573	57422573	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	57422573	57422573	T	-	DEL	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	frame_shift_del	c.3098	p.K1033fs	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866				177	0	0	60	22	26.8293
MBD6	0	genome.wustl.edu	37	12	57921732	57921733	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	57921732	57921733	GG	-	DEL	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	frame_shift_del	c.2338_2339	p.G782fs	1.000:1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				151	0	0	54	15	21.7391
NUP107	0	genome.wustl.edu	37	12	69126366	69126366	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	69126366	69126366	A	-	DEL	NUP107	ENST00000401003	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NUP107	HGNC	ENSG00000111581				17	0	0	5	6	54.5455
EEA1	0	genome.wustl.edu	37	12	93236245	93236245	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	12	93236245	93236245	T	-	DEL	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	frame_shift_del	c.911	p.N304fs	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189				17	0	0	15	9	37.5
MYO16	0	genome.wustl.edu	37	13	109661386	109661386	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	109661386	109661386	T	-	DEL	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	frame_shift_del	c.2518	p.F842fs	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				107	1	0.925926	61	24	28.2353
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				23	0	0	22	13	37.1429
PABPC3	0	genome.wustl.edu	37	13	25670801	25670802	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	25670801	25670802	-	A	INS	PABPC3	ENST00000281589	human	ensembl	74_37	+1	known	frame_shift_ins	c.465_466	p.M157fs	1.000:1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846				183	0	0	80	41	33.8843
SLC46A3	0	genome.wustl.edu	37	13	29291959	29291959	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	29291959	29291959	A	-	DEL	SLC46A3	ENST00000266943	human	ensembl	74_37	-1	known	frame_shift_del	c.177	p.F59fs	0.551	pfam_MFS	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC46A3	HGNC	ENSG00000139508				187	0	0	89	36	28.8
SLC7A1	0	genome.wustl.edu	37	13	30091766	30091766	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	30091766	30091766	T	-	DEL	SLC7A1	ENST00000380752	human	ensembl	74_37	-1	known	frame_shift_del	c.1454	p.N485fs	0.488	pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A1	HGNC	ENSG00000139514				342	0	0	125	45	26.4706
BRCA2	0	genome.wustl.edu	37	13	32907421	32907421	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	32907421	32907421	A	-	DEL	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	frame_shift_del	c.1806	p.I605fs	0.544	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				72	0	0	37	17	31.4815
LRRC63	0	genome.wustl.edu	37	13	46844471	46844471	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	46844471	46844471	G	-	DEL	LRRC63	ENST00000446175	human	ensembl	74_37	+1	known	frame_shift_del	c.1553	p.A520fs	0.849	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC63	HGNC	ENSG00000173988				117	0	0	56	20	26.3158
SETDB2	0	genome.wustl.edu	37	13	50065970	50065970	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	50065970	50065970	A	-	DEL	SETDB2	ENST00000317257	human	ensembl	74_37	+1	known	frame_shift_del	c.2145	p.I718fs	0.859	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom	-	no_errors	SETDB2	HGNC	ENSG00000136169				132	0	0	60	31	34.0659
SERPINE3	0	genome.wustl.edu	37	13	51922451	51922451	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	51922451	51922451	C	-	DEL	SERPINE3	ENST00000521255	human	ensembl	74_37	+1	known	frame_shift_del	c.803	p.L270fs	0.002	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINE3	HGNC	ENSG00000253309				60	0	0	30	8	21.0526
VPS36	0	genome.wustl.edu	37	13	52999942	52999942	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	52999942	52999942	A	-	DEL	VPS36	ENST00000492650	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	VPS36	HGNC	ENSG00000136100				13	0	0	16	8	33.3333
VPS36	0	genome.wustl.edu	37	13	53000037	53000038	+	RNA	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	53000037	53000038	-	A	INS	VPS36	ENST00000492650	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009:0.000	-	-	-	no_errors	VPS36	HGNC	ENSG00000136100				81	0	0	35	22	38.5965
TBC1D4	0	genome.wustl.edu	37	13	75869048	75869048	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	75869048	75869048	G	-	DEL	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	frame_shift_del	c.3258	p.W1087fs	0.972	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				102	0	0	55	22	28.5714
ABCC4	0	genome.wustl.edu	37	13	95696016	95696016	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	95696016	95696016	T	-	DEL	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	frame_shift_del	c.3655	p.I1219fs	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				149	0	0	60	31	34.0659
ABCC4	0	genome.wustl.edu	37	13	95735432	95735432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	13	95735432	95735432	A	-	DEL	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	frame_shift_del	c.2648	p.L883fs	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				126	0	0	40	23	36.5079
OR4N2	0	genome.wustl.edu	37	14	20296108	20296108	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	20296108	20296108	T	-	DEL	OR4N2	ENST00000315947	human	ensembl	74_37	+1	known	frame_shift_del	c.501	p.C169fs	0.422	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294				490	0	0	260	43	14.1914
ENSG00000258908	0	genome.wustl.edu	37	14	20943125	20943125	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	20943125	20943125	T	-	DEL	ENSG00000258908	ENST00000554678	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-203M5.8	Clone_based_vega_gene	ENSG00000258908				125	0	0	63	26	29.2135
ENSG00000270433	0	genome.wustl.edu	37	14	23764353	23764355	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	23764353	23764355	AAA	-	DEL	ENSG00000270433	ENST00000604456	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002:0.007	-	-	-	no_errors	RP11-124D2.7	Clone_based_vega_gene	ENSG00000270433				24	0	0	10	4	28.5714
CBLN3	0	genome.wustl.edu	37	14	24898055	24898055	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	24898055	24898055	G	-	DEL	CBLN3	ENST00000267406	human	ensembl	74_37	-1	known	frame_shift_del	c.206	p.P69fs	0.868	smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN3	HGNC	ENSG00000139899				37	0	0	10	6	37.5
ARHGAP5	0	genome.wustl.edu	37	14	32562545	32562545	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	32562545	32562545	T	-	DEL	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	frame_shift_del	c.2670	p.F892fs	0.999	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				82	0	0	21	50	70.4225
RALGAPA1	0	genome.wustl.edu	37	14	36155847	36155847	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	36155847	36155847	T	-	DEL	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	frame_shift_del	c.2601	p.K867fs	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				26	0	0	17	5	22.7273
MIS18BP1	0	genome.wustl.edu	37	14	45711240	45711241	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	45711240	45711241	-	T	INS	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	frame_shift_ins	c.1140_1139	p.N380fs	0.073:0.064	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				167	1	0.595238	60	27	31.0345
NIN	0	genome.wustl.edu	37	14	51239111	51239113	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	51239111	51239113	AGG	-	DEL	NIN	ENST00000245441	human	ensembl	74_37	-1	known	in_frame_del	c.889_887	p.S296in_frame_del	1.000:1.000:1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				95	0	0	35	14	28.5714
NID2	0	genome.wustl.edu	37	14	52481919	52481919	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	52481919	52481919	G	-	DEL	NID2	ENST00000216286	human	ensembl	74_37	-1	known	frame_shift_del	c.3103	p.R1035fs	0.061	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				183	0	0	50	16	24.2424
GCH1	0	genome.wustl.edu	37	14	55309835	55309835	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	55309835	55309835	A	-	DEL	GCH1	ENST00000254299	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GCH1	HGNC	ENSG00000131979				19	0	0	12	4	25
ARID4A	0	genome.wustl.edu	37	14	58814451	58814451	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	58814451	58814451	A	-	DEL	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	frame_shift_del	c.1259	p.D423fs	0.935	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219				96	0	0	49	30	37.9747
FAM71D	0	genome.wustl.edu	37	14	67664853	67664853	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	67664853	67664853	T	-	DEL	FAM71D	ENST00000531566	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM71D	HGNC	ENSG00000172717				147	0	0	59	25	29.7619
YLPM1	0	genome.wustl.edu	37	14	75230471	75230471	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	75230471	75230471	G	-	DEL	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	frame_shift_del	c.279	p.G95fs	0.840	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				105	0	0	22	16	42.1053
CEP128	0	genome.wustl.edu	37	14	80963839	80963840	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	80963839	80963840	-	T	INS	CEP128	ENST00000281129	human	ensembl	74_37	-1	known	frame_shift_ins	c.3268_3267	p.E1089fs	0.997:0.996	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629				42	0	0	27	15	35.7143
RPS6KA5	0	genome.wustl.edu	37	14	91366489	91366489	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	91366489	91366489	T	-	DEL	RPS6KA5	ENST00000261991	human	ensembl	74_37	-1	known	frame_shift_del	c.1342	p.S448fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Aminoglycoside_PTrfase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_AGC-kinase_C,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA5	HGNC	ENSG00000100784				152	0	0	81	21	20.5882
RPS6KA5	0	genome.wustl.edu	37	14	91444703	91444703	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	91444703	91444703	A	-	DEL	RPS6KA5	ENST00000261991	human	ensembl	74_37	-1	known	frame_shift_del	c.341	p.L114fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Aminoglycoside_PTrfase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_AGC-kinase_C,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA5	HGNC	ENSG00000100784				220	0	0	115	49	29.878
TRIP11	0	genome.wustl.edu	37	14	92472698	92472698	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	14	92472698	92472698	T	-	DEL	TRIP11	ENST00000267622	human	ensembl	74_37	-1	known	frame_shift_del	c.1622	p.K541fs	0.995	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815				58	0	0	44	21	32.3077
LOC101927079	0	genome.wustl.edu	37	15	22332413	22332413	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	22332413	22332413	A	-	DEL	LOC101927079	ENST00000558896	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.693	-	-	-	no_errors	RP11-69H14.6	Clone_based_vega_gene	ENSG00000259176				115	0	0	61	23	27.381
LOC101927079	0	genome.wustl.edu	37	15	22332594	22332594	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	22332594	22332594	T	-	DEL	LOC101927079	ENST00000558896	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	RP11-69H14.6	Clone_based_vega_gene	ENSG00000259176				285	0	0	186	22	10.5769
SNHG14	0	genome.wustl.edu	37	15	25227367	25227367	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	25227367	25227367	T	-	DEL	SNHG14	ENST00000551361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				22	0	0	14	6	30
OCA2	0	genome.wustl.edu	37	15	28200305	28200305	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	28200305	28200305	T	-	DEL	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	frame_shift_del	c.1841	p.K614fs	1.000	pfam_Cit_transptr-like_dom,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				283	1	0.352113	99	35	26.1194
SLC12A1	0	genome.wustl.edu	37	15	48548096	48548096	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	48548096	48548096	A	-	DEL	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	frame_shift_del	c.2031	p.N679fs	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				27	0	0	2	3	60
FGF7	0	genome.wustl.edu	37	15	49776644	49776644	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	49776644	49776644	A	-	DEL	FGF7	ENST00000267843	human	ensembl	74_37	+1	known	frame_shift_del	c.528	p.T179fs	0.929	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF7	HGNC	ENSG00000140285				62	0	0	56	12	17.6471
SLTM	0	genome.wustl.edu	37	15	59185211	59185211	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	59185211	59185211	T	-	DEL	SLTM	ENST00000380516	human	ensembl	74_37	-1	known	frame_shift_del	c.1783	p.R595fs	1.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776				48	0	0	29	19	39.5833
SLTM	0	genome.wustl.edu	37	15	59186310	59186310	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	59186310	59186310	T	-	DEL	SLTM	ENST00000380516	human	ensembl	74_37	-1	known	frame_shift_del	c.1460	p.N487fs	0.076	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776				48	0	0	28	6	17.6471
DIS3L	0	genome.wustl.edu	37	15	66607460	66607460	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	66607460	66607460	A	-	DEL	DIS3L	ENST00000319212	human	ensembl	74_37	+1	known	frame_shift_del	c.901	p.N302fs	0.000	NULL	NULL	-	no_errors	DIS3L	HGNC	ENSG00000166938				153	0	0	92	10	9.80392
RASGRF1	0	genome.wustl.edu	37	15	79291158	79291158	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	15	79291158	79291158	G	-	DEL	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	frame_shift_del	c.2804	p.P935fs	0.964	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				113	0	0	42	15	26.3158
SRRM2	0	genome.wustl.edu	37	16	2809032	2809034	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	2809032	2809034	AAG	-	DEL	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	in_frame_del	c.640_642	p.K217in_frame_del	1.000:1.000:1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				149	0	0	51	26	33.7662
CLN3	0	genome.wustl.edu	37	16	28495431	28495434	+	Frame_Shift_Del	DEL	AAGA	AAGA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AAGA	AAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	28495431	28495434	AAGA	-	DEL	CLN3	ENST00000359984	human	ensembl	74_37	-1	known	frame_shift_del	c.686_683	p.F228fs	0.941:0.958:0.990:0.998	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr	pfam_Battenin_disease_Cln3,superfamily_MFS_dom_general_subst_transpt,pirsf_Battenin_disease_Cln3_subgr,prints_Battenin_disease_Cln3	-	no_errors	CLN3	HGNC	ENSG00000188603				38	0	0	10	5	33.3333
ASPHD1	0	genome.wustl.edu	37	16	29912627	29912628	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	29912627	29912628	-	T	INS	ASPHD1	ENST00000308748	human	ensembl	74_37	+1	known	frame_shift_ins	c.335_336	p.G113fs	0.007:0.004	NULL	pfam_Asp_Arg_b-Hydrxlase	-	no_errors	ASPHD1	HGNC	ENSG00000174939				182	0	0	43	27	38.5714
ZNF48	0	genome.wustl.edu	37	16	30409299	30409299	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	30409299	30409299	G	-	DEL	ZNF48	ENST00000320159	human	ensembl	74_37	+1	known	frame_shift_del	c.728	p.E245fs	0.150	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035				132	0	0	37	16	30.1887
CLDN9	0	genome.wustl.edu	37	16	3063895	3063895	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	3063895	3063895	G	-	DEL	CLDN9	ENST00000445369	human	ensembl	74_37	+1	known	frame_shift_del	c.532	p.L180fs	0.976	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin9	-	no_errors	CLDN9	HGNC	ENSG00000213937				88	0	0	11	34	75.5556
CLDN6	0	genome.wustl.edu	37	16	3065456	3065456	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	3065456	3065456	C	-	DEL	CLDN6	ENST00000328796	human	ensembl	74_37	-1	known	frame_shift_del	c.567	p.S190fs	0.007	prints_Claudin6	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697				132	1	0.75188	30	22	42.3077
ZSCAN32	0	genome.wustl.edu	37	16	3433514	3433515	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	3433514	3433515	-	T	INS	ZSCAN32	ENST00000396846	human	ensembl	74_37	-1	known	frame_shift_ins	c.1432_1431	p.S477fs	0.010:0.010	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN32	HGNC	ENSG00000140987				147	0	0	58	35	37.6344
LOC100506083	0	genome.wustl.edu	37	16	70349837	70349838	+	RNA	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	70349837	70349838	-	T	INS	LOC100506083	ENST00000562077	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	RP11-529K1.2	Clone_based_vega_gene	ENSG00000261777				162	0	0	95	46	32.6241
SF3B3	0	genome.wustl.edu	37	16	70599405	70599405	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	70599405	70599405	A	-	DEL	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	frame_shift_del	c.2804	p.K936fs	1.000	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				114	0	0	65	13	16.6667
CFDP1	0	genome.wustl.edu	37	16	75448501	75448501	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	75448501	75448501	T	-	DEL	CFDP1	ENST00000283882	human	ensembl	74_37	-1	known	frame_shift_del	c.157	p.R53fs	1.000	NULL	pfam_BCNT-C	-	no_errors	CFDP1	HGNC	ENSG00000153774				282	0	0	96	35	26.7176
SNAI3-AS1	0	genome.wustl.edu	37	16	88752672	88752673	+	RNA	INS	-	-	CT			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	16	88752672	88752673	-	CT	INS	SNAI3-AS1	ENST00000567997	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	SNAI3-AS1	HGNC	ENSG00000260630				15	0	0	6	8	57.1429
ENSG00000226145	0	genome.wustl.edu	37	17	16725607	16725607	+	RNA	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	16725607	16725607	C	-	DEL	ENSG00000226145	ENST00000417510	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.534	-	-	-	no_errors	AC022596.6	Clone_based_vega_gene	ENSG00000226145				44	0	0	22	14	38.8889
MPRIP	0	genome.wustl.edu	37	17	17061827	17061827	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	17061827	17061827	G	-	DEL	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	frame_shift_del	c.1557	p.E521fs	0.000	NULL	pfam_Pleckstrin_homology,superfamily_Ferritin-like_SF,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030				80	0	0	18	11	37.931
SRR	0	genome.wustl.edu	37	17	2224617	2224618	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	2224617	2224618	AA	-	DEL	SRR	ENST00000344595	human	ensembl	74_37	+1	known	frame_shift_del	c.417_418	p.R141fs	0.053:0.043	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SRR	HGNC	ENSG00000167720				200	0	0	73	43	37.069
NLK	0	genome.wustl.edu	37	17	26449740	26449740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	26449740	26449740	T	-	DEL	NLK	ENST00000407008	human	ensembl	74_37	+1	known	frame_shift_del	c.570	p.F192fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NLK	HGNC	ENSG00000087095				187	0	0	67	31	31.6327
LOC101927911	0	genome.wustl.edu	37	17	2868825	2868825	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	2868825	2868825	T	-	DEL	LOC101927911	ENST00000574885	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.588	-	-	-	no_errors	CTD-3060P21.1	Clone_based_vega_gene	ENSG00000262884				29	0	0	4	6	60
AOC2	0	genome.wustl.edu	37	17	40997348	40997348	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	40997348	40997348	C	-	DEL	AOC2	ENST00000253799	human	ensembl	74_37	+1	known	frame_shift_del	c.705	p.V237fs	0.992	pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N3,pfam_Cu_amine_oxidase_N2,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC2	HGNC	ENSG00000131480				177	0	0	92	6	6.12245
HOXB7	0	genome.wustl.edu	37	17	46685063	46685063	+	RNA	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	46685063	46685063	G	-	DEL	HOXB7	ENST00000567101	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	HOXB7	HGNC	ENSG00000260027				11	0	0	5	4	44.4444
XYLT2	0	genome.wustl.edu	37	17	48433966	48433967	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	48433966	48433967	-	C	INS	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_ins	c.1577_1578	p.G529fs	1.000:1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				166	0	0	63	17	21.25
BZRAP1	0	genome.wustl.edu	37	17	56400095	56400095	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	56400095	56400095	C	-	DEL	BZRAP1	ENST00000355701	human	ensembl	74_37	-1	known	frame_shift_del	c.1237	p.V413fs	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379				166	0	0	34	18	34.6154
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				341	2	0.58309	88	37	29.6
RNF43	0	genome.wustl.edu	37	17	56437531	56437531	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	56437531	56437531	G	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.931	p.L311fs	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				246	1	0.404858	66	36	35.2941
PRR11	0	genome.wustl.edu	37	17	57271001	57271002	+	In_Frame_Ins	INS	-	-	TCC			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	57271001	57271002	-	TCC	INS	PRR11	ENST00000262293	human	ensembl	74_37	+1	known	in_frame_ins	c.551_552	p.188in_frame_insP	0.135:0.523	NULL	NULL	-	no_errors	PRR11	HGNC	ENSG00000068489				113	0	0	44	16	26.6667
SLC16A6	0	genome.wustl.edu	37	17	66270150	66270150	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	66270150	66270150	C	-	DEL	SLC16A6	ENST00000327268	human	ensembl	74_37	-1	known	frame_shift_del	c.294	p.L99fs	0.006	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932				117	1	0.847458	37	12	24.4898
SLC16A13	0	genome.wustl.edu	37	17	6939720	6939720	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	6939720	6939720	C	-	DEL	SLC16A13	ENST00000308027	human	ensembl	74_37	+1	known	frame_shift_del	c.19	p.D9fs	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A13	HGNC	ENSG00000174327				214	0	0	66	20	23.2558
YBX2	0	genome.wustl.edu	37	17	7193637	7193637	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	7193637	7193637	G	-	DEL	YBX2	ENST00000007699	human	ensembl	74_37	-1	known	frame_shift_del	c.677	p.P226fs	0.892	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX2	HGNC	ENSG00000006047				445	1	0.224215	165	68	29.1845
KIAA0195	0	genome.wustl.edu	37	17	73491063	73491063	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	73491063	73491063	C	-	DEL	KIAA0195	ENST00000314256	human	ensembl	74_37	+1	known	frame_shift_del	c.2676	p.S895fs	0.999	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728				251	0	0	56	76	57.5758
SENP3-EIF4A1	0	genome.wustl.edu	37	17	7481907	7481907	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	7481907	7481907	T	-	DEL	SENP3-EIF4A1	ENST00000579777	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.653	-	-	-	no_errors	SENP3-EIF4A1	HGNC	ENSG00000265500				24	0	0	13	2	13.3333
KDM6B	0	genome.wustl.edu	37	17	7751995	7751995	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	7751995	7751995	C	-	DEL	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	frame_shift_del	c.2389	p.S799fs	0.986	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				78	0	0	15	10	40
CARD14	0	genome.wustl.edu	37	17	78176025	78176025	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	17	78176025	78176025	G	-	DEL	CARD14	ENST00000344227	human	ensembl	74_37	+1	known	frame_shift_del	c.2025	p.D677fs	0.199	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin-like	-	no_errors	CARD14	HGNC	ENSG00000141527				154	0	0	46	18	28.125
ENSG00000252258	0	genome.wustl.edu	37	18	3025533	3025533	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	3025533	3025533	A	-	DEL	ENSG00000252258	ENST00000516449	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA70	RFAM	ENSG00000252258				26	0	0	25	10	28.5714
KLHL14	0	genome.wustl.edu	37	18	30349862	30349862	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	30349862	30349862	G	-	DEL	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	frame_shift_del	c.693	p.V232fs	0.982	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				75	0	0	28	17	37.7778
ZBTB7C	0	genome.wustl.edu	37	18	45566519	45566519	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	45566519	45566519	C	-	DEL	ZBTB7C	ENST00000332053	human	ensembl	74_37	-1	known	frame_shift_del	c.960	p.P321fs	0.989	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828				153	0	0	73	22	23.1579
ZBTB7C	0	genome.wustl.edu	37	18	45567085	45567085	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	45567085	45567085	C	-	DEL	ZBTB7C	ENST00000332053	human	ensembl	74_37	-1	known	frame_shift_del	c.394	p.D132fs	0.050	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828				61	0	0	24	7	22.5806
ENSG00000267040	0	genome.wustl.edu	37	18	55335787	55335790	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	55335787	55335790	AAAA	-	DEL	ENSG00000267040	ENST00000592201	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors	RP11-35G9.3	Clone_based_vega_gene	ENSG00000267040				32	0	0	26	6	18.75
PHLPP1	0	genome.wustl.edu	37	18	60639886	60639887	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	60639886	60639887	-	A	INS	PHLPP1	ENST00000262719	human	ensembl	74_37	+1	known	frame_shift_ins	c.3700_3701	p.T1236fs	1.000:1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913				59	0	0	23	6	20.6897
SERPINB10	0	genome.wustl.edu	37	18	61584739	61584739	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	18	61584739	61584739	A	-	DEL	SERPINB10	ENST00000238508	human	ensembl	74_37	+1	known	frame_shift_del	c.218	p.R76fs	0.998	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550				38	0	0	21	8	27.5862
DNM2	0	genome.wustl.edu	37	19	10940881	10940882	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	10940881	10940882	-	C	INS	DNM2	ENST00000314646	human	ensembl	74_37	+1	known	frame_shift_ins	c.2370_2371	p.L792fs	0.894:1.000	NULL	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM2	HGNC	ENSG00000079805				234	0	0	59	25	29.7619
DAZAP1	0	genome.wustl.edu	37	19	1432590	1432590	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	1432590	1432590	G	-	DEL	DAZAP1	ENST00000233078	human	ensembl	74_37	+1	known	frame_shift_del	c.949	p.A318fs	0.997	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DAZAP1	HGNC	ENSG00000071626				349	0	0	94	31	24.8
MAP1S	0	genome.wustl.edu	37	19	17838362	17838362	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	17838362	17838362	C	-	DEL	MAP1S	ENST00000324096	human	ensembl	74_37	+1	known	frame_shift_del	c.2169	p.R725fs	0.000	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479				84	0	0	14	10	41.6667
CILP2	0	genome.wustl.edu	37	19	19656228	19656229	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	19656228	19656229	-	G	INS	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	frame_shift_ins	c.2874_2875	p.S960fs	0.023:0.999	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161				73	0	0	17	8	32
ZNF77	0	genome.wustl.edu	37	19	2933664	2933666	+	In_Frame_Del	DEL	ACT	ACT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	ACT	ACT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	2933664	2933666	ACT	-	DEL	ZNF77	ENST00000314531	human	ensembl	74_37	-1	known	in_frame_del	c.1461_1459	p.S487in_frame_del	0.919:0.988:0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF77	HGNC	ENSG00000175691				115	0	0	60	25	29.4118
RGS9BP	0	genome.wustl.edu	37	19	33167776	33167776	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	33167776	33167776	G	-	DEL	RGS9BP	ENST00000334176	human	ensembl	74_37	+1	known	frame_shift_del	c.607	p.G205fs	0.000	NULL	NULL	-	no_errors	RGS9BP	HGNC	ENSG00000186326				34	0	0	5	8	61.5385
KMT2B	0	genome.wustl.edu	37	19	36210763	36210764	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	36210763	36210764	-	C	INS	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_ins	c.514_515	p.K176fs	0.976:0.976	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				208	0	0	77	32	29.3578
ZNF566	0	genome.wustl.edu	37	19	36940209	36940209	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	36940209	36940209	T	-	DEL	ZNF566	ENST00000392170	human	ensembl	74_37	-1	known	frame_shift_del	c.930	p.K310fs	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF566	HGNC	ENSG00000186017				136	0	0	79	22	21.7822
FCGBP	0	genome.wustl.edu	37	19	40411726	40411726	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	40411726	40411726	C	-	DEL	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	frame_shift_del	c.3902	p.G1301fs	0.067	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				520	0	0	163	23	12.3656
PSG11	0	genome.wustl.edu	37	19	43530519	43530519	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	43530519	43530519	C	-	DEL	PSG11	ENST00000320078	human	ensembl	74_37	-1	known	frame_shift_del	c.6	p.L4fs	0.114	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG11	HGNC	ENSG00000243130				275	0	0	126	23	15.4362
IRGQ	0	genome.wustl.edu	37	19	44096194	44096194	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	44096194	44096194	G	-	DEL	IRGQ	ENST00000422989	human	ensembl	74_37	-1	known	frame_shift_del	c.1856	p.P619fs	0.001	NULL	superfamily_P-loop_NTPase	-	no_errors	IRGQ	HGNC	ENSG00000167378				402	0	0	132	54	29.0323
PLIN4	0	genome.wustl.edu	37	19	4512150	4512150	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	4512150	4512150	C	-	DEL	PLIN4	ENST00000301286	human	ensembl	74_37	-1	novel	frame_shift_del	c.1780	p.A594fs	0.766	NULL	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676				680	0	0	239	82	25.5452
TICAM1	0	genome.wustl.edu	37	19	4816465	4816465	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	4816465	4816465	G	-	DEL	TICAM1	ENST00000248244	human	ensembl	74_37	-1	known	frame_shift_del	c.1925	p.P642fs	0.003	pirsf_TICAM1	superfamily_TIR_dom,pirsf_TICAM1	-	no_errors	TICAM1	HGNC	ENSG00000127666				50	0	0	16	4	20
LMTK3	0	genome.wustl.edu	37	19	49001688	49001688	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	49001688	49001688	C	-	DEL	LMTK3	ENST00000270238	human	ensembl	74_37	-1	known	frame_shift_del	c.2725	p.A909fs	0.003	smart_Ser/Thr_dual-sp_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235				23	0	0	7	4	36.3636
PRR12	0	genome.wustl.edu	37	19	50099279	50099280	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	50099279	50099280	CA	-	DEL	PRR12	ENST00000418929	human	ensembl	74_37	+1	novel	frame_shift_del	c.1687_1688	p.I564fs	0.998:0.999	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464				198	0	0	44	16	26.6667
PTOV1	0	genome.wustl.edu	37	19	50363526	50363527	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	50363526	50363527	-	G	INS	PTOV1	ENST00000391842	human	ensembl	74_37	+1	known	frame_shift_ins	c.1241_1242	p.*417fs	1.000:1.000	NULL	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960				69	0	0	16	4	20
KLK8	0	genome.wustl.edu	37	19	51503681	51503682	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	51503681	51503682	-	T	INS	KLK8	ENST00000391806	human	ensembl	74_37	-1	known	frame_shift_ins	c.364_363	p.P121fs	0.090:0.490	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK8	HGNC	ENSG00000129455				303	0	0	88	28	24.1379
ZNF702P	0	genome.wustl.edu	37	19	53473566	53473566	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	53473566	53473566	T	-	DEL	ZNF702P	ENST00000270443	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	ZNF702P	HGNC	ENSG00000242779				104	0	0	61	34	35.7895
BRSK1	0	genome.wustl.edu	37	19	55815036	55815036	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	55815036	55815036	C	-	DEL	BRSK1	ENST00000590333	human	ensembl	74_37	+1	known	frame_shift_del	c.1176	p.R395fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	BRSK1	HGNC	ENSG00000160469				175	1	0.568182	61	33	35.1064
BSG	0	genome.wustl.edu	37	19	577814	577814	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	577814	577814	G	-	DEL	BSG	ENST00000333511	human	ensembl	74_37	+1	known	frame_shift_del	c.108	p.G38fs	0.472	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BSG	HGNC	ENSG00000172270				9	0	0	4	2	33.3333
ZNF17	0	genome.wustl.edu	37	19	57932545	57932545	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	57932545	57932545	T	-	DEL	ZNF17	ENST00000601808	human	ensembl	74_37	+1	known	frame_shift_del	c.1685	p.F563fs	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF17	HGNC	ENSG00000186272				97	0	0	43	22	33.8462
ZNF549	0	genome.wustl.edu	37	19	58049657	58049657	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	58049657	58049657	A	-	DEL	ZNF549	ENST00000376233	human	ensembl	74_37	+1	known	frame_shift_del	c.1285	p.R431fs	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF549	HGNC	ENSG00000121406				129	0	0	53	33	38.3721
RANBP3	0	genome.wustl.edu	37	19	5951588	5951588	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	5951588	5951588	T	-	DEL	RANBP3	ENST00000340578	human	ensembl	74_37	-1	known	frame_shift_del	c.98	p.N33fs	1.000	NULL	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823				53	0	0	24	3	11.1111
OR7E24	0	genome.wustl.edu	37	19	9361741	9361741	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	19	9361741	9361741	T	-	DEL	OR7E24	ENST00000456448	human	ensembl	74_37	+1	known	frame_shift_del	c.22	p.F11fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521				21	0	0	12	13	52
RANBP2	0	genome.wustl.edu	37	2	109389413	109389413	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	109389413	109389413	T	-	DEL	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	frame_shift_del	c.8203	p.C2737fs	0.997	pfam_IR1-M	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				58	0	0	36	15	29.4118
TMEM87B	0	genome.wustl.edu	37	2	112839024	112839024	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	112839024	112839024	T	-	DEL	TMEM87B	ENST00000283206	human	ensembl	74_37	+1	known	frame_shift_del	c.767	p.L258fs	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	TMEM87B	HGNC	ENSG00000153214				222	0	0	91	32	26.0163
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				183	1	0.543478	65	61	48.4127
RIF1	0	genome.wustl.edu	37	2	152320541	152320541	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	152320541	152320541	A	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.4507	p.K1505fs	0.001	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				154	1	0.645161	77	33	30
MARCH7	0	genome.wustl.edu	37	2	160604680	160604680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	160604680	160604680	T	-	DEL	MARCH7	ENST00000259050	human	ensembl	74_37	+1	known	frame_shift_del	c.879	p.S296fs	0.910	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536				85	0	0	74	11	12.9412
TBR1	0	genome.wustl.edu	37	2	162274290	162274290	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	162274290	162274290	T	-	DEL	TBR1	ENST00000389554	human	ensembl	74_37	+1	known	frame_shift_del	c.796	p.Q267fs	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBR1	HGNC	ENSG00000136535				105	0	0	66	12	15.3846
PXDN	0	genome.wustl.edu	37	2	1652960	1652960	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	1652960	1652960	G	-	DEL	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	frame_shift_del	c.2592	p.N865fs	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				89	0	0	17	8	32
SCN9A	0	genome.wustl.edu	37	2	167055185	167055185	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	167055185	167055185	T	-	DEL	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	frame_shift_del	c.5967	p.K1989fs	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				21	0	0	9	7	43.75
FASTKD1	0	genome.wustl.edu	37	2	170428529	170428530	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	170428529	170428530	-	T	INS	FASTKD1	ENST00000453153	human	ensembl	74_37	-1	known	frame_shift_ins	c.11_10	p.T4fs	0.000:0.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD1	HGNC	ENSG00000138399				81	0	0	42	11	20.7547
PPIG	0	genome.wustl.edu	37	2	170493804	170493804	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	170493804	170493804	A	-	DEL	PPIG	ENST00000260970	human	ensembl	74_37	+1	known	frame_shift_del	c.2036	p.K681fs	0.885	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398				111	0	0	53	26	32.9114
NEUROD1	0	genome.wustl.edu	37	2	182542971	182542972	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	182542971	182542972	-	G	INS	NEUROD1	ENST00000295108	human	ensembl	74_37	-1	known	frame_shift_ins	c.617_616	p.H206fs	0.999:0.996	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD1	HGNC	ENSG00000162992				198	0	0	35	21	37.5
DNAH7	0	genome.wustl.edu	37	2	196788373	196788374	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	196788373	196788374	-	T	INS	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_ins	c.3771_3770	p.N1257fs	0.000:0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				122	0	0	60	15	20
DNAH7	0	genome.wustl.edu	37	2	196801374	196801374	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	196801374	196801374	A	-	DEL	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_del	c.3221	p.L1074fs	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				120	0	0	59	16	21.3333
NOP58	0	genome.wustl.edu	37	2	203168133	203168133	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	203168133	203168133	A	-	DEL	NOP58	ENST00000264279	human	ensembl	74_37	+1	known	frame_shift_del	c.1564	p.K524fs	1.000	NULL	pfam_Nop_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP58	HGNC	ENSG00000055044				63	0	0	36	11	23.4043
RAPH1	0	genome.wustl.edu	37	2	204305618	204305619	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	204305618	204305619	-	G	INS	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	frame_shift_ins	c.2451_2450	p.P818fs	0.401:0.409	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				282	2	0.704225	60	10	14.2857
CCDC108	0	genome.wustl.edu	37	2	219883883	219883883	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	219883883	219883883	G	-	DEL	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	frame_shift_del	c.3492	p.V1165fs	0.000	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				222	1	0.44843	51	12	19.0476
DNPEP	0	genome.wustl.edu	37	2	220239647	220239648	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	220239647	220239648	-	G	INS	DNPEP	ENST00000273075	human	ensembl	74_37	-1	known	frame_shift_ins	c.1337_1336	p.Q446fs	1.000:1.000	pfam_Peptidase_M18,pfam_Peptidase_M42,prints_Peptidase_M18	pfam_Peptidase_M18,pfam_Peptidase_M42,prints_Peptidase_M18	-	no_errors	DNPEP	HGNC	ENSG00000123992				107	0	0	34	7	17.0732
SLC4A3	0	genome.wustl.edu	37	2	220494110	220494111	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	220494110	220494111	-	C	INS	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	frame_shift_ins	c.462_463	p.H156fs	0.015:0.049	prints_Anion_exchange_3	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				47	0	0	13	3	18.75
SP140	0	genome.wustl.edu	37	2	231159024	231159025	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	231159024	231159025	-	A	INS	SP140	ENST00000392045	human	ensembl	74_37	+1	known	frame_shift_ins	c.2007_2008	p.R672fs	0.001:0.001	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263				64	0	0	31	12	27.907
USP40	0	genome.wustl.edu	37	2	234394236	234394237	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	234394236	234394237	-	T	INS	USP40	ENST00000450966	human	ensembl	74_37	-1	known	frame_shift_ins	c.3478_3477	p.Q1159fs	1.000:1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP40	HGNC	ENSG00000085982				54	0	0	27	5	15.625
RBM44	0	genome.wustl.edu	37	2	238727072	238727072	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	238727072	238727072	A	-	DEL	RBM44	ENST00000316997	human	ensembl	74_37	+1	known	frame_shift_del	c.1513	p.K506fs	0.309	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483				78	0	0	32	10	23.8095
PER2	0	genome.wustl.edu	37	2	239157776	239157777	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	239157776	239157777	CT	-	DEL	PER2	ENST00000254657	human	ensembl	74_37	-1	known	frame_shift_del	c.3545_3544	p.Q1183fs	0.001:0.001	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326				391	0	0	173	39	18.3962
HDAC4	0	genome.wustl.edu	37	2	240002823	240002823	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	240002823	240002823	G	-	DEL	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	frame_shift_del	c.2703	p.M902fs	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024				78	0	0	18	4	18.1818
ATAD2B	0	genome.wustl.edu	37	2	24098756	24098756	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	24098756	24098756	T	-	DEL	ATAD2B	ENST00000238789	human	ensembl	74_37	-1	known	frame_shift_del	c.920	p.K307fs	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,pfam_IstB_ATP-bd,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2B	HGNC	ENSG00000119778				42	0	0	21	3	12.5
HDLBP	0	genome.wustl.edu	37	2	242186274	242186274	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	242186274	242186274	T	-	DEL	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	frame_shift_del	c.1843	p.I615fs	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				432	0	0	143	50	25.9067
COX7A2L	0	genome.wustl.edu	37	2	42578275	42578275	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	42578275	42578275	A	-	DEL	COX7A2L	ENST00000482463	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COX7A2L	HGNC	ENSG00000115944				20	0	0	7	5	41.6667
PRKCE	0	genome.wustl.edu	37	2	46386829	46386830	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	46386829	46386830	AA	-	DEL	PRKCE	ENST00000306156	human	ensembl	74_37	+1	known	frame_shift_del	c.2005_2006	p.K669fs	1.000:1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132				271	0	0	74	36	32.7273
PELI1	0	genome.wustl.edu	37	2	64331929	64331931	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	64331929	64331931	CTT	-	DEL	PELI1	ENST00000358912	human	ensembl	74_37	-1	known	in_frame_del	c.107_105	p.R37in_frame_del	1.000:1.000:1.000	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI1	HGNC	ENSG00000197329				52	0	0	29	15	34.0909
GGCX	0	genome.wustl.edu	37	2	85780733	85780733	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	85780733	85780733	T	-	DEL	GGCX	ENST00000482662	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	GGCX	HGNC	ENSG00000115486				35	0	0	15	4	21.0526
UNC50	0	genome.wustl.edu	37	2	99232795	99232795	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	99232795	99232795	T	-	DEL	UNC50	ENST00000409347	human	ensembl	74_37	+1	known	frame_shift_del	c.578	p.F195fs	0.997	pfam_UNC-50	pfam_UNC-50	-	no_errors	UNC50	HGNC	ENSG00000115446				193	1	0.515464	130	52	28.5714
TAF1B	0	genome.wustl.edu	37	2	9989571	9989572	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	2	9989571	9989572	AA	-	DEL	TAF1B	ENST00000263663	human	ensembl	74_37	+1	known	frame_shift_del	c.187_188	p.N66fs	0.991:0.950	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750				22	0	0	11	2	15.3846
PLK1S1	0	genome.wustl.edu	37	20	21143725	21143725	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	21143725	21143725	A	-	DEL	PLK1S1	ENST00000246027	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PLK1S1	HGNC	ENSG00000088970				215	1	0.462963	89	41	31.5385
NXT1	0	genome.wustl.edu	37	20	23334925	23334926	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	23334925	23334926	-	A	INS	NXT1	ENST00000254998	human	ensembl	74_37	+1	known	frame_shift_ins	c.247_248	p.A84fs	1.000:1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXT1	HGNC	ENSG00000132661				236	0	0	87	43	33.0769
ASXL1	0	genome.wustl.edu	37	20	31022442	31022442	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	31022442	31022442	G	-	DEL	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	frame_shift_del	c.1927	p.G645fs	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				27	0	0	15	5	25
MIR644A	0	genome.wustl.edu	37	20	33054130	33054130	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	33054130	33054130	T	-	DEL	MIR644A	ENST00000385262	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	MIR644A	HGNC	ENSG00000207997				34	0	0	25	14	35.8974
SAMHD1	0	genome.wustl.edu	37	20	35521429	35521429	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	35521429	35521429	T	-	DEL	SAMHD1	ENST00000262878	human	ensembl	74_37	-1	known	frame_shift_del	c.1787	p.K596fs	0.000	NULL	pfam_HD_domain,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,smart_HD/PDEase_dom,pfscan_SAM	-	no_errors	SAMHD1	HGNC	ENSG00000101347				189	0	0	92	33	26.4
ZMYND8	0	genome.wustl.edu	37	20	45875072	45875072	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	45875072	45875072	T	-	DEL	ZMYND8	ENST00000536340	human	ensembl	74_37	-1	known	frame_shift_del	c.1985	p.K662fs	1.000	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP_dom,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040				317	3	0.9375	160	74	31.6239
ZNFX1	0	genome.wustl.edu	37	20	47872464	47872465	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	47872464	47872465	-	T	INS	ZNFX1	ENST00000371752	human	ensembl	74_37	-1	known	frame_shift_ins	c.2685_2684	p.K896fs	1.000:1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201				126	0	0	41	14	25.4545
KCNB1	0	genome.wustl.edu	37	20	47989891	47989891	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	47989891	47989891	G	-	DEL	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	frame_shift_del	c.2206	p.R736fs	1.000	prints_K_chnl_volt-dep_Kv2.1	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445				188	0	0	98	19	16.2393
SYCP2	0	genome.wustl.edu	37	20	58467047	58467047	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	58467047	58467047	T	-	DEL	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_del	c.2362	p.M788fs	0.029	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				60	0	0	38	24	38.7097
HELZ2	0	genome.wustl.edu	37	20	62199825	62199825	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	20	62199825	62199825	G	-	DEL	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	frame_shift_del	c.1616	p.P539fs	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				20	0	0	4	2	33.3333
ITSN1	0	genome.wustl.edu	37	21	35147278	35147278	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	35147278	35147278	A	-	DEL	ITSN1	ENST00000381285	human	ensembl	74_37	+1	known	frame_shift_del	c.1462	p.K489fs	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,superfamily_P-loop_NTPase,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN1	HGNC	ENSG00000205726				101	0	0	31	33	51.5625
BRWD1	0	genome.wustl.edu	37	21	40570895	40570896	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	40570895	40570896	-	T	INS	BRWD1	ENST00000333229	human	ensembl	74_37	-1	known	frame_shift_ins	c.5447_5446	p.T1816fs	1.000:1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658				206	1	0.483092	78	58	42.6471
MCM3AP	0	genome.wustl.edu	37	21	47662804	47662805	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	21	47662804	47662805	-	A	INS	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	frame_shift_ins	c.5338_5337	p.K1779fs	1.000:1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				163	0	0	53	6	10.1695
CCT8L2	0	genome.wustl.edu	37	22	17071787	17071787	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	17071787	17071787	T	-	DEL	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	frame_shift_del	c.1654	p.I552fs	0.000	NULL	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				169	0	0	72	38	34.5455
SGSM1	0	genome.wustl.edu	37	22	25308665	25308665	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	25308665	25308665	C	-	DEL	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	frame_shift_del	c.3039	p.H1015fs	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037				70	0	0	9	8	47.0588
RFPL1S	0	genome.wustl.edu	37	22	29837513	29837513	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	29837513	29837513	T	-	DEL	RFPL1S	ENST00000461286	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RFPL1S	HGNC	ENSG00000225465				149	0	0	61	33	35.1064
SMTN	0	genome.wustl.edu	37	22	31485922	31485922	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	31485922	31485922	C	-	DEL	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	frame_shift_del	c.709	p.S239fs	0.420	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				25	0	0	8	3	27.2727
LIMK2	0	genome.wustl.edu	37	22	31672777	31672777	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	31672777	31672777	C	-	DEL	LIMK2	ENST00000340552	human	ensembl	74_37	+1	putative	frame_shift_del	c.1712	p.575fs	0.996	smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PP1_inhibitor,pfam_PDZ,pfam_Znf_LIM,superfamily_Kinase-like_dom,superfamily_PP1_inhibitor,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541				40	0	0	13	8	38.0952
RFPL2	0	genome.wustl.edu	37	22	32589332	32589332	+	RNA	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	32589332	32589332	C	-	DEL	RFPL2	ENST00000489846	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	RFPL2	HGNC	ENSG00000128253				106	0	0	52	20	27.7778
TRIOBP	0	genome.wustl.edu	37	22	38121788	38121789	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	38121788	38121789	-	C	INS	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	frame_shift_ins	c.3225_3226	p.R1077fs	0.986:0.998	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				184	0	0	84	14	14.2857
C22orf23	0	genome.wustl.edu	37	22	38340219	38340221	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	38340219	38340221	CTT	-	DEL	C22orf23	ENST00000249079	human	ensembl	74_37	-1	known	in_frame_del	c.617_615	p.R206in_frame_del	1.000:1.000:1.000	pfam_UPF0193	pfam_UPF0193	-	no_errors	C22orf23	HGNC	ENSG00000128346				147	0	0	40	17	29.8246
CSNK1E	0	genome.wustl.edu	37	22	38698968	38698970	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	38698968	38698970	GTT	-	DEL	CSNK1E	ENST00000359867	human	ensembl	74_37	-1	known	in_frame_del	c.234_232	p.N78in_frame_del	0.999:1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1E	HGNC	ENSG00000213923				194	0	0	55	22	28.5714
TNRC6B	0	genome.wustl.edu	37	22	40661353	40661353	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	40661353	40661353	A	-	DEL	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	frame_shift_del	c.1119	p.N375fs	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				182	0	0	52	32	38.0952
CELSR1	0	genome.wustl.edu	37	22	46793727	46793728	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	22	46793727	46793728	-	C	INS	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	frame_shift_ins	c.5545_5544	p.T1848fs	1.000:1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				41	0	0	6	2	25
GPR128	0	genome.wustl.edu	37	3	100354497	100354497	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	100354497	100354497	T	-	DEL	GPR128	ENST00000481361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	GPR128	HGNC	ENSG00000144820				82	0	0	43	10	18.8679
CD86	0	genome.wustl.edu	37	3	121838329	121838329	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	121838329	121838329	T	-	DEL	CD86	ENST00000330540	human	ensembl	74_37	+1	known	frame_shift_del	c.938	p.F314fs	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD86	HGNC	ENSG00000114013				113	0	0	71	21	22.8261
H1FOO	0	genome.wustl.edu	37	3	129268112	129268113	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	129268112	129268113	-	G	INS	H1FOO	ENST00000324382	human	ensembl	74_37	+1	known	frame_shift_ins	c.647_648	p.V217fs	0.007:0.006	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	-	no_errors	H1FOO	HGNC	ENSG00000178804				18	0	0	4	2	33.3333
ACAD11	0	genome.wustl.edu	37	3	132322086	132322086	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	132322086	132322086	T	-	DEL	ACAD11	ENST00000264990	human	ensembl	74_37	-1	known	frame_shift_del	c.1608	p.K536fs	0.994	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303				182	0	0	96	49	33.7931
TOPBP1	0	genome.wustl.edu	37	3	133329880	133329880	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	133329880	133329880	T	-	DEL	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	frame_shift_del	c.4141	p.I1381fs	0.605	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781				255	0	0	103	41	28.4722
U2SURP	0	genome.wustl.edu	37	3	142773947	142773948	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	142773947	142773948	-	A	INS	U2SURP	ENST00000473835	human	ensembl	74_37	+1	known	frame_shift_ins	c.2937_2938	p.A981fs	1.000:1.000	NULL	pfam_Surp,pfam_RRM_dom,superfamily_Surp,superfamily_ENTH_VHS,smart_RRM_dom,smart_Surp,smart_CID_dom,pfscan_Surp,pfscan_RRM_dom	-	no_errors	U2SURP	HGNC	ENSG00000163714				26	0	0	8	3	27.2727
MED12L	0	genome.wustl.edu	37	3	151112597	151112598	+	In_Frame_Ins	INS	-	-	GCA			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	151112597	151112598	-	GCA	INS	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	in_frame_ins	c.5657_5658	p.1890in_frame_insQ	0.885:1.000	pfam_Mediator_Med12_catenin-bd	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				162	0	0	76	29	27.619
EAF1-AS1	0	genome.wustl.edu	37	3	15480599	15480599	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	15480599	15480599	T	-	DEL	EAF1-AS1	ENST00000494875	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.925	-	-	-	no_errors	EAF1-AS1	HGNC	ENSG00000249786				30	0	0	25	4	13.7931
PHC3	0	genome.wustl.edu	37	3	169896634	169896635	+	In_Frame_Ins	INS	-	-	TGG			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	169896634	169896635	-	TGG	INS	PHC3	ENST00000495893	human	ensembl	74_37	-1	known	in_frame_ins	c.107_106	p.36in_frame_insT	0.426:0.466	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889				523	1	0.19084	208	58	21.8045
NCEH1	0	genome.wustl.edu	37	3	172351857	172351857	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	172351857	172351857	T	-	DEL	NCEH1	ENST00000538775	human	ensembl	74_37	-1	known	frame_shift_del	c.755	p.N252fs	0.005	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	-	no_errors	NCEH1	HGNC	ENSG00000144959				116	0	0	58	15	20.5479
CCDC39	0	genome.wustl.edu	37	3	180378490	180378490	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	180378490	180378490	T	-	DEL	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	frame_shift_del	c.384	p.K128fs	0.986	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075				20	0	0	9	3	25
B3GNT5	0	genome.wustl.edu	37	3	182987674	182987674	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	182987674	182987674	T	-	DEL	B3GNT5	ENST00000326505	human	ensembl	74_37	+1	known	frame_shift_del	c.88	p.W32fs	0.912	NULL	pfam_Glyco_trans_31,superfamily_Luciferase-like_dom	-	no_errors	B3GNT5	HGNC	ENSG00000176597				211	1	0.471698	107	49	31.4103
CHRD	0	genome.wustl.edu	37	3	184105718	184105718	+	Splice_Site	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	184105718	184105718	G	-	DEL	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	splice_site_del	c.2452-1	e20-1	1.000	-	-	-	no_errors	CHRD	HGNC	ENSG00000090539				32	0	0	14	8	36.3636
TNK2	0	genome.wustl.edu	37	3	195595229	195595229	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	195595229	195595229	G	-	DEL	TNK2	ENST00000381916	human	ensembl	74_37	-1	known	frame_shift_del	c.2129	p.P710fs	0.994	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cdc42_binding_dom_like,pfam_Inhibitor_Mig-6,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	TNK2	HGNC	ENSG00000061938				177	1	0.561798	43	13	23.2143
DLG1	0	genome.wustl.edu	37	3	196857544	196857545	+	Splice_Site	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	196857544	196857545	-	A	INS	DLG1	ENST00000346964	human	ensembl	74_37	-1	known	splice_site_ins	c.1120-3_1120-2	e11-2	1.000:0.869	-	-	-	no_errors	DLG1	HGNC	ENSG00000075711				60	0	0	21	24	53.3333
ENSG00000232783	0	genome.wustl.edu	37	3	197838274	197838275	+	RNA	DEL	AA	AA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	197838274	197838275	AA	-	DEL	ENSG00000232783	ENST00000411596	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	AC073135.3	Clone_based_vega_gene	ENSG00000232783				46	0	0	28	6	17.6471
VIPR1	0	genome.wustl.edu	37	3	42569093	42569093	+	RNA	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	42569093	42569093	C	-	DEL	VIPR1	ENST00000473575	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VIPR1	HGNC	ENSG00000114812				21	0	0	8	7	46.6667
HHATL	0	genome.wustl.edu	37	3	42739670	42739672	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	42739670	42739672	GAA	-	DEL	HHATL	ENST00000310417	human	ensembl	74_37	-1	known	in_frame_del	c.657_655	p.F219in_frame_del	0.986:1.000:1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	HHATL	HGNC	ENSG00000010282				206	0	0	74	30	28.8462
ANO10	0	genome.wustl.edu	37	3	43647213	43647213	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	43647213	43647213	T	-	DEL	ANO10	ENST00000292246	human	ensembl	74_37	-1	known	frame_shift_del	c.132	p.D45fs	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746				99	0	0	44	18	29.0323
NBEAL2	0	genome.wustl.edu	37	3	47040920	47040920	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	47040920	47040920	C	-	DEL	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	frame_shift_del	c.3659	p.Q1222fs	0.984	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				13	0	0	7	5	41.6667
KIF9-AS1	0	genome.wustl.edu	37	3	47287796	47287796	+	RNA	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	47287796	47287796	G	-	DEL	KIF9-AS1	ENST00000429315	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	KIF9-AS1	HGNC	ENSG00000227398				47	0	0	9	8	47.0588
LAMB2	0	genome.wustl.edu	37	3	49160436	49160436	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	49160436	49160436	C	-	DEL	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	frame_shift_del	c.4274	p.G1425fs	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				54	0	0	20	8	28.5714
RBM6	0	genome.wustl.edu	37	3	50004794	50004795	+	RNA	DEL	AA	AA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	50004794	50004795	AA	-	DEL	RBM6	ENST00000488807	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	RBM6	HGNC	ENSG00000004534				46	0	0	9	4	30.7692
DNAH1	0	genome.wustl.edu	37	3	52412624	52412624	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	52412624	52412624	C	-	DEL	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	frame_shift_del	c.7205	p.H2404fs	0.991	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				365	0	0	119	24	16.7832
FAM208A	0	genome.wustl.edu	37	3	56681079	56681079	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	56681079	56681079	A	-	DEL	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	frame_shift_del	c.1686	p.F562fs	1.000	NULL	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946				110	0	0	54	14	20.5882
DNAH12	0	genome.wustl.edu	37	3	57509313	57509313	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	3	57509313	57509313	T	-	DEL	DNAH12	ENST00000351747	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.G93fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844				29	0	0	28	4	12.5
SLC2A9	0	genome.wustl.edu	37	4	10027510	10027510	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	10027510	10027510	A	-	DEL	SLC2A9	ENST00000509214	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC2A9	HGNC	ENSG00000109667				81	0	0	47	34	41.9753
TRMT10A	0	genome.wustl.edu	37	4	100479335	100479335	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	100479335	100479335	T	-	DEL	TRMT10A	ENST00000273962	human	ensembl	74_37	-1	known	frame_shift_del	c.219	p.K73fs	0.994	pirsf_tRNA_MeTfrase_TRM10	pfam_tRNA_m1G_MeTrfase,pirsf_tRNA_MeTfrase_TRM10	-	no_errors	TRMT10A	HGNC	ENSG00000145331				61	0	0	37	20	35.0877
LOC101929353	0	genome.wustl.edu	37	4	101111194	101111194	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	101111194	101111194	A	-	DEL	LOC101929353	ENST00000515782	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-588P8.1	Clone_based_vega_gene	ENSG00000249710				42	0	0	19	11	36.6667
LARP7	0	genome.wustl.edu	37	4	113570754	113570754	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	113570754	113570754	A	-	DEL	LARP7	ENST00000324052	human	ensembl	74_37	+1	known	frame_shift_del	c.1206	p.T405fs	1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720				37	0	0	23	13	36.1111
QRFPR	0	genome.wustl.edu	37	4	122250740	122250740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	122250740	122250740	T	-	DEL	QRFPR	ENST00000394427	human	ensembl	74_37	-1	known	frame_shift_del	c.1025	p.N342fs	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_NPY_rcpt,prints_NPFF_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	QRFPR	HGNC	ENSG00000186867				73	0	0	64	19	22.8916
ANKRD50	0	genome.wustl.edu	37	4	125591535	125591535	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	125591535	125591535	A	-	DEL	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	frame_shift_del	c.2897	p.L966fs	0.998	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458				100	0	0	70	33	32.0388
BOD1L1	0	genome.wustl.edu	37	4	13610162	13610162	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	13610162	13610162	T	-	DEL	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	frame_shift_del	c.1734	p.D579fs	1.000	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				18	0	0	3	5	62.5
SNX25	0	genome.wustl.edu	37	4	186272695	186272695	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	186272695	186272695	A	-	DEL	SNX25	ENST00000264694	human	ensembl	74_37	+1	known	frame_shift_del	c.1906	p.N638fs	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_RGS_dom,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX25	HGNC	ENSG00000109762				136	0	0	71	36	33.6449
PCDH7	0	genome.wustl.edu	37	4	30726042	30726043	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	30726042	30726043	-	C	INS	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	frame_shift_ins	c.2998_2999	p.L1002fs	1.000:1.000	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				129	0	0	47	13	21.6667
LIAS	0	genome.wustl.edu	37	4	39462464	39462464	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	39462464	39462464	A	-	DEL	LIAS	ENST00000261434	human	ensembl	74_37	+1	known	frame_shift_del	c.100	p.K36fs	0.641	pirsf_Lipoyl_synth	pfam_rSAM,smart_Elp3/MiaB/NifB,pirsf_Lipoyl_synth,tigrfam_Lipoyl_synth	-	no_errors	LIAS	HGNC	ENSG00000121897				300	1	0.332226	133	40	23.1214
ZBTB49	0	genome.wustl.edu	37	4	4304738	4304739	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	4304738	4304739	AG	-	DEL	ZBTB49	ENST00000337872	human	ensembl	74_37	+1	known	frame_shift_del	c.1175_1176	p.R393fs	1.000:1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB49	HGNC	ENSG00000168826				205	0	0	72	28	28
FRYL	0	genome.wustl.edu	37	4	48566025	48566025	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	48566025	48566025	G	-	DEL	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	frame_shift_del	c.3536	p.T1179fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				133	0	0	72	9	11.1111
OCIAD1	0	genome.wustl.edu	37	4	48859372	48859372	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	48859372	48859372	A	-	DEL	OCIAD1	ENST00000264312	human	ensembl	74_37	+1	known	frame_shift_del	c.690	p.E233fs	0.300	NULL	pfam_OCIA	-	no_errors	OCIAD1	HGNC	ENSG00000109180				124	0	0	62	17	21.519
C4orf6	0	genome.wustl.edu	37	4	5527116	5527116	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	5527116	5527116	T	-	DEL	C4orf6	ENST00000195455	human	ensembl	74_37	+1	known	frame_shift_del	c.59	p.F23fs	0.077	NULL	NULL	-	no_errors	C4orf6	HGNC	ENSG00000082929				27	0	0	12	12	50
ANTXR2	0	genome.wustl.edu	37	4	80905985	80905986	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	80905985	80905986	-	G	INS	ANTXR2	ENST00000307333	human	ensembl	74_37	-1	known	frame_shift_ins	c.1074_1073	p.A359fs	0.994:0.992	pirsf_Anthrax_toxin_rcpt	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_C,pfam_Anthrax_toxin_rcpt_extracel,pfam_VWF_A,superfamily_Ig_E-set,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR2	HGNC	ENSG00000163297				40	0	0	14	2	12.5
C4orf22	0	genome.wustl.edu	37	4	81791253	81791254	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	81791253	81791254	-	A	INS	C4orf22	ENST00000508675	human	ensembl	74_37	+1	known	frame_shift_ins	c.491_492	p.R167fs	0.870:0.769	NULL	NULL	-	no_errors	C4orf22	HGNC	ENSG00000197826				162	0	0	104	10	8.77193
SEC31A	0	genome.wustl.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	83785565	83785565	T	-	DEL	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	frame_shift_del	c.1384	p.I462fs	0.985	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674				103	0	0	36	49	57.6471
SLC10A6	0	genome.wustl.edu	37	4	87769943	87769943	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	87769943	87769943	C	-	DEL	SLC10A6	ENST00000273905	human	ensembl	74_37	-1	known	frame_shift_del	c.326	p.G109fs	1.000	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A6	HGNC	ENSG00000145283				217	0	0	84	37	30.5785
GRID2	0	genome.wustl.edu	37	4	93225753	93225753	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	4	93225753	93225753	A	-	DEL	GRID2	ENST00000505687	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208				28	0	0	19	7	26.9231
PGGT1B	0	genome.wustl.edu	37	5	114552569	114552570	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	114552569	114552570	-	C	INS	PGGT1B	ENST00000419445	human	ensembl	74_37	-1	known	frame_shift_ins	c.945_944	p.S315fs	1.000:1.000	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	PGGT1B	HGNC	ENSG00000164219				70	0	0	16	10	38.4615
NRG2	0	genome.wustl.edu	37	5	139422136	139422136	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	139422136	139422136	C	-	DEL	NRG2	ENST00000545385	human	ensembl	74_37	-1	known	frame_shift_del	c.519	p.L174fs	0.976	NULL	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom	-	no_errors	NRG2	HGNC	ENSG00000158458				143	0	0	31	8	20.5128
TRIO	0	genome.wustl.edu	37	5	14482694	14482694	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	14482694	14482694	A	-	DEL	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	frame_shift_del	c.6469	p.I2158fs	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				46	0	0	27	13	32.5
TCERG1	0	genome.wustl.edu	37	5	145886723	145886723	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	145886723	145886723	A	-	DEL	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	frame_shift_del	c.2863	p.K957fs	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				180	1	0.552486	76	34	30.9091
GALNT10	0	genome.wustl.edu	37	5	153789315	153789315	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	153789315	153789315	G	-	DEL	GALNT10	ENST00000297107	human	ensembl	74_37	+1	known	frame_shift_del	c.1379	p.E462fs	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT10	HGNC	ENSG00000164574				212	0	0	73	16	17.9775
SPDL1	0	genome.wustl.edu	37	5	169015404	169015404	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	169015404	169015404	A	-	DEL	SPDL1	ENST00000510751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SPDL1	HGNC	ENSG00000040275				95	0	0	41	16	28.0702
COL23A1	0	genome.wustl.edu	37	5	177683356	177683356	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	177683356	177683356	G	-	DEL	COL23A1	ENST00000390654	human	ensembl	74_37	-1	known	frame_shift_del	c.880	p.R294fs	0.998	pfam_Collagen	pfam_Collagen	-	no_errors	COL23A1	HGNC	ENSG00000050767				48	0	0	5	4	44.4444
LOC101928649	0	genome.wustl.edu	37	5	180684516	180684516	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	180684516	180684516	T	-	DEL	LOC101928649	ENST00000417281	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.042	-	-	-	no_errors	CTC-338M12.4	Clone_based_vega_gene	ENSG00000233937				62	0	0	28	13	31.7073
TTC33	0	genome.wustl.edu	37	5	40716477	40716477	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	40716477	40716477	T	-	DEL	TTC33	ENST00000337702	human	ensembl	74_37	-1	known	frame_shift_del	c.559	p.S187fs	0.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC33	HGNC	ENSG00000113638				201	0	0	97	43	30.7143
PLK2	0	genome.wustl.edu	37	5	57753012	57753012	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	57753012	57753012	A	-	DEL	PLK2	ENST00000274289	human	ensembl	74_37	-1	known	frame_shift_del	c.1004	p.L335fs	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK2	HGNC	ENSG00000145632				63	0	0	52	17	24.6377
HTR1A	0	genome.wustl.edu	37	5	63256737	63256744	+	Frame_Shift_Del	DEL	CTTGCTCT	CTTGCTCT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	CTTGCTCT	CTTGCTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	63256737	63256744	CTTGCTCT	-	DEL	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	frame_shift_del	c.810_803	p.E268fs	0.000:0.000:0.019:0.026:0.029:0.206:0.977:0.982	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				161	0	0	42	6	12.5
MSH3	0	genome.wustl.edu	37	5	79970914	79970915	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	5	79970914	79970915	-	A	INS	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_ins	c.1140_1141	p.G384fs	0.993:0.982	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				291	0	0	141	53	27.3196
POPDC3	0	genome.wustl.edu	37	6	105606265	105606265	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	105606265	105606265	T	-	DEL	POPDC3	ENST00000474760	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	POPDC3	HGNC	ENSG00000132429				26	0	0	14	8	36.3636
TMEM14B	0	genome.wustl.edu	37	6	10756864	10756866	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	10756864	10756866	AAA	-	DEL	TMEM14B	ENST00000486421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.015:0.019	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210				18	0	0	5	4	44.4444
ENSG00000227678	0	genome.wustl.edu	37	6	130454856	130454856	+	RNA	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	130454856	130454856	T	-	DEL	ENSG00000227678	ENST00000415964	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.125	-	-	-	no_errors	RP11-73O6.3	Clone_based_vega_gene	ENSG00000227678				20	0	0	18	6	25
CTAGE9	0	genome.wustl.edu	37	6	132031982	132031982	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	132031982	132031982	A	-	DEL	CTAGE9	ENST00000314099	human	ensembl	74_37	-1	known	frame_shift_del	c.176	p.L59fs	0.000	NULL	NULL	-	no_errors	CTAGE9	HGNC	ENSG00000236761				175	0	0	112	19	14.5038
SGK1	0	genome.wustl.edu	37	6	134492026	134492028	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	134492026	134492028	AGA	-	DEL	SGK1	ENST00000367858	human	ensembl	74_37	-1	known	in_frame_del	c.1351_1349	p.F450in_frame_del	1.000:1.000:1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	SGK1	HGNC	ENSG00000118515				270	0	0	113	31	21.5278
BCLAF1	0	genome.wustl.edu	37	6	136597290	136597290	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	136597290	136597290	T	-	DEL	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	frame_shift_del	c.1373	p.N458fs	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				188	0	0	158	28	15.0538
CCDC28A	0	genome.wustl.edu	37	6	139097330	139097330	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	139097330	139097330	A	-	DEL	CCDC28A	ENST00000332797	human	ensembl	74_37	+1	known	frame_shift_del	c.343	p.N117fs	1.000	NULL	NULL	-	no_errors	CCDC28A	HGNC	ENSG00000024862				174	0	0	81	48	37.2093
UTRN	0	genome.wustl.edu	37	6	144782471	144782471	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	144782471	144782471	A	-	DEL	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	frame_shift_del	c.2846	p.K951fs	0.878	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				340	1	0.293255	106	54	33.75
JARID2	0	genome.wustl.edu	37	6	15496722	15496722	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	15496722	15496722	G	-	DEL	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	frame_shift_del	c.1266	p.R425fs	0.963	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				184	0	0	52	8	13.3333
WTAP	0	genome.wustl.edu	37	6	160157395	160157395	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	160157395	160157395	A	-	DEL	WTAP	ENST00000494513	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WTAP	HGNC	ENSG00000146457				48	0	0	30	16	34.7826
IGF2R	0	genome.wustl.edu	37	6	160485488	160485488	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	160485488	160485488	G	-	DEL	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	frame_shift_del	c.3942	p.D1317fs	0.125	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				281	0	0	79	93	54.0698
PDE10A	0	genome.wustl.edu	37	6	165844962	165844963	+	Splice_Site	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	165844962	165844963	-	A	INS	PDE10A	ENST00000539869	human	ensembl	74_37	-1	known	splice_site_ins	c.694-3_694-2	e8-2	0.032:0.014	-	-	-	no_errors	PDE10A	HGNC	ENSG00000112541				181	1	0.549451	65	25	27.7778
DHX16	0	genome.wustl.edu	37	6	30621048	30621048	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	30621048	30621048	T	-	DEL	DHX16	ENST00000376442	human	ensembl	74_37	-1	known	frame_shift_del	c.3097	p.I1033fs	0.987	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560				152	0	0	44	45	50.5618
PRPF4B	0	genome.wustl.edu	37	6	4032412	4032412	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	4032412	4032412	A	-	DEL	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	frame_shift_del	c.661	p.K222fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				432	0	0	169	41	19.5238
PRPF4B	0	genome.wustl.edu	37	6	4059124	4059124	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	4059124	4059124	A	-	DEL	PRPF4B	ENST00000466185	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	PRPF4B	HGNC	ENSG00000112739				10	0	0	7	9	56.25
KLHDC3	0	genome.wustl.edu	37	6	42986249	42986249	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	42986249	42986249	C	-	DEL	KLHDC3	ENST00000326974	human	ensembl	74_37	+1	known	frame_shift_del	c.688	p.P231fs	1.000	pfam_Kelch_2,pfam_Kelch_1	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	KLHDC3	HGNC	ENSG00000124702				311	0	0	141	51	26.5625
LRRC73	0	genome.wustl.edu	37	6	43475221	43475222	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	43475221	43475222	CT	-	DEL	LRRC73	ENST00000372441	human	ensembl	74_37	-1	novel	frame_shift_del	c.853_852	p.G285fs	0.998:0.997	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC73	HGNC	ENSG00000204052				143	0	0	45	14	23.7288
KLHL31	0	genome.wustl.edu	37	6	53519514	53519514	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	53519514	53519514	T	-	DEL	KLHL31	ENST00000370905	human	ensembl	74_37	-1	known	frame_shift_del	c.557	p.N186fs	0.258	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_DUF1668_ORYSA,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL31	HGNC	ENSG00000124743				99	0	0	92	6	6.12245
KLHL31	0	genome.wustl.edu	37	6	53519758	53519759	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	53519758	53519759	-	T	INS	KLHL31	ENST00000370905	human	ensembl	74_37	-1	known	frame_shift_ins	c.313_312	p.D104fs	1.000:1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_DUF1668_ORYSA,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL31	HGNC	ENSG00000124743				242	0	0	130	44	25.2874
C6orf165	0	genome.wustl.edu	37	6	88144700	88144700	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	88144700	88144700	A	-	DEL	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	frame_shift_del	c.1423	p.N477fs	1.000	pfam_DUF3508	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				109	1	0.909091	53	31	36.9048
GABRR1	0	genome.wustl.edu	37	6	89895130	89895130	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	6	89895130	89895130	T	-	DEL	GABRR1	ENST00000454853	human	ensembl	74_37	-1	known	frame_shift_del	c.695	p.K232fs	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho1_rcpt,prints_Neur_channel,prints_GABAAa_rho_rcpt,tigrfam_Neur_channel	-	no_errors	GABRR1	HGNC	ENSG00000146276				183	0	0	92	41	30.8271
NYAP1	0	genome.wustl.edu	37	7	100086494	100086494	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	100086494	100086494	C	-	DEL	NYAP1	ENST00000423930	human	ensembl	74_37	+1	known	frame_shift_del	c.1150	p.P385fs	1.000	NULL	NULL	-	no_errors	NYAP1	HGNC	ENSG00000166924				104	0	0	44	9	16.9811
SLC12A9	0	genome.wustl.edu	37	7	100452000	100452000	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	100452000	100452000	G	-	DEL	SLC12A9	ENST00000354161	human	ensembl	74_37	+1	known	frame_shift_del	c.181	p.F62fs	1.000	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC12A9	HGNC	ENSG00000146828				63	0	0	23	13	36.1111
PLOD3	0	genome.wustl.edu	37	7	100855927	100855927	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	100855927	100855927	G	-	DEL	PLOD3	ENST00000223127	human	ensembl	74_37	-1	known	frame_shift_del	c.889	p.R297fs	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397				129	0	0	28	12	30
LEP	0	genome.wustl.edu	37	7	127894705	127894705	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	127894705	127894705	G	-	DEL	LEP	ENST00000308868	human	ensembl	74_37	+1	known	frame_shift_del	c.393	p.G133fs	0.008	pfam_Leptin,superfamily_4_helix_cytokine-like_core,pirsf_Leptin,prints_Leptin	pfam_Leptin,superfamily_4_helix_cytokine-like_core,pirsf_Leptin,prints_Leptin	-	no_errors	LEP	HGNC	ENSG00000174697				110	0	0	30	10	25
JHDM1D	0	genome.wustl.edu	37	7	139833448	139833448	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	139833448	139833448	T	-	DEL	JHDM1D	ENST00000397560	human	ensembl	74_37	-1	known	frame_shift_del	c.289	p.R97fs	1.000	superfamily_Znf_FYVE_PHD	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	JHDM1D	HGNC	ENSG00000006459				92	0	0	46	15	24.5902
SSPO	0	genome.wustl.edu	37	7	149489430	149489431	+	RNA	DEL	GT	GT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	149489430	149489431	GT	-	DEL	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.482:0.998	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				20	0	0	3	4	57.1429
SPDYE1	0	genome.wustl.edu	37	7	44040752	44040754	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	44040752	44040754	AGA	-	DEL	SPDYE1	ENST00000258704	human	ensembl	74_37	+1	known	in_frame_del	c.128_130	p.K44in_frame_del	0.013:0.013:0.013	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE1	HGNC	ENSG00000136206				118	0	0	55	4	6.77966
RHBDD2	0	genome.wustl.edu	37	7	75512837	75512838	+	RNA	DEL	AA	AA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	75512837	75512838	AA	-	DEL	RHBDD2	ENST00000467406	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.010:0.011	-	-	-	no_errors	RHBDD2	HGNC	ENSG00000005486				15	0	0	12	6	33.3333
PTPN12	0	genome.wustl.edu	37	7	77247840	77247840	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	77247840	77247840	A	-	DEL	PTPN12	ENST00000248594	human	ensembl	74_37	+1	known	frame_shift_del	c.983	p.K329fs	1.000	pirsf_Ptpn_12	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Ptpn_12,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947				253	0	0	104	44	29.7297
PCLO	0	genome.wustl.edu	37	7	82582944	82582944	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	82582944	82582944	T	-	DEL	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	frame_shift_del	c.7325	p.K2442fs	0.984	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				26	0	0	11	9	45
CROT	0	genome.wustl.edu	37	7	86978480	86978480	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	86978480	86978480	A	-	DEL	CROT	ENST00000331536	human	ensembl	74_37	+1	known	frame_shift_del	c.96	p.K34fs	0.795	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469				68	0	0	48	22	31.4286
RBM48	0	genome.wustl.edu	37	7	92161811	92161811	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	92161811	92161811	A	-	DEL	RBM48	ENST00000265732	human	ensembl	74_37	+1	known	frame_shift_del	c.396	p.K134fs	1.000	NULL	NULL	-	no_errors	RBM48	HGNC	ENSG00000127993				136	0	0	76	34	30.9091
HEPACAM2	0	genome.wustl.edu	37	7	92844875	92844875	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	92844875	92844875	T	-	DEL	HEPACAM2	ENST00000394468	human	ensembl	74_37	-1	known	frame_shift_del	c.554	p.N185fs	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	HEPACAM2	HGNC	ENSG00000188175				131	0	0	65	36	35.6436
CASD1	0	genome.wustl.edu	37	7	94174999	94174999	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	94174999	94174999	A	-	DEL	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	frame_shift_del	c.1619	p.A543fs	1.000	pfam_Cas1_AcylTrans_dom	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995				38	0	0	21	15	41.6667
TECPR1	0	genome.wustl.edu	37	7	97862826	97862827	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	7	97862826	97862827	-	A	INS	TECPR1	ENST00000379795	human	ensembl	74_37	-1	known	frame_shift_ins	c.1579_1578	p.G526fs	0.230:0.090	NULL	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356				19	0	0	4	4	50
FBXO43	0	genome.wustl.edu	37	8	101154105	101154105	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	101154105	101154105	T	-	DEL	FBXO43	ENST00000428847	human	ensembl	74_37	-1	known	frame_shift_del	c.377	p.K126fs	0.005	NULL	pfam_Znf_C6HC,superfamily_F-box_dom,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509				206	0	0	174	10	5.43478
LONRF1	0	genome.wustl.edu	37	8	12589276	12589276	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	12589276	12589276	T	-	DEL	LONRF1	ENST00000398246	human	ensembl	74_37	-1	known	frame_shift_del	c.1657	p.I553fs	1.000	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF1	HGNC	ENSG00000154359				50	0	0	45	6	11.7647
DLC1	0	genome.wustl.edu	37	8	12957359	12957359	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	12957359	12957359	G	-	DEL	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	frame_shift_del	c.2487	p.S830fs	0.000	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				235	0	0	120	18	13.0435
ZC3H3	0	genome.wustl.edu	37	8	144621235	144621235	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	144621235	144621235	C	-	DEL	ZC3H3	ENST00000262577	human	ensembl	74_37	-1	known	frame_shift_del	c.302	p.G101fs	0.073	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H3	HGNC	ENSG00000014164				259	0	0	92	37	28.6822
SPATC1	0	genome.wustl.edu	37	8	145095783	145095784	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	145095783	145095784	-	C	INS	SPATC1	ENST00000377470	human	ensembl	74_37	+1	known	frame_shift_ins	c.1081_1082	p.H363fs	0.001:0.001	NULL	NULL	-	no_errors	SPATC1	HGNC	ENSG00000186583				85	0	0	31	10	24.3902
OPLAH	0	genome.wustl.edu	37	8	145109541	145109542	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	145109541	145109542	-	G	INS	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	frame_shift_ins	c.2609_2608	p.H870fs	1.000:1.000	pfam_Hydantoinase_B	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				101	0	0	41	7	14.5833
KIFC2	0	genome.wustl.edu	37	8	145692659	145692659	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	145692659	145692659	G	-	DEL	KIFC2	ENST00000301332	human	ensembl	74_37	+1	known	frame_shift_del	c.404	p.R137fs	0.026	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIFC2	HGNC	ENSG00000167702				234	0	0	110	40	26.6667
SLC7A2	0	genome.wustl.edu	37	8	17412535	17412538	+	Frame_Shift_Del	DEL	GAGT	GAGT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	GAGT	GAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	17412535	17412538	GAGT	-	DEL	SLC7A2	ENST00000398090	human	ensembl	74_37	+1	known	frame_shift_del	c.1256_1259	p.S421fs	1.000:1.000:1.000:1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989				219	0	0	146	38	20.6522
PSD3	0	genome.wustl.edu	37	8	18490296	18490296	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	18490296	18490296	T	-	DEL	PSD3	ENST00000440756	human	ensembl	74_37	-1	known	frame_shift_del	c.2243	p.K748fs	1.000	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	PSD3	HGNC	ENSG00000156011				57	0	0	51	16	23.8806
BMP1	0	genome.wustl.edu	37	8	22067038	22067038	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	22067038	22067038	G	-	DEL	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	frame_shift_del	c.2656	p.G887fs	0.884	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				378	0	0	187	44	19.0476
PIWIL2	0	genome.wustl.edu	37	8	22175773	22175773	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	22175773	22175773	A	-	DEL	PIWIL2	ENST00000356766	human	ensembl	74_37	+1	known	frame_shift_del	c.2388	p.K798fs	0.999	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181				184	0	0	69	9	11.5385
ADAMDEC1	0	genome.wustl.edu	37	8	24257686	24257686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	24257686	24257686	A	-	DEL	ADAMDEC1	ENST00000256412	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	0.044	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028				28	0	0	23	16	41.0256
FZD3	0	genome.wustl.edu	37	8	28385158	28385159	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	28385158	28385159	-	T	INS	FZD3	ENST00000240093	human	ensembl	74_37	+1	known	frame_shift_ins	c.881_882	p.T297fs	1.000:1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD3	HGNC	ENSG00000104290				119	0	0	131	36	21.5569
GOT1L1	0	genome.wustl.edu	37	8	37791834	37791834	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	37791834	37791834	T	-	DEL	GOT1L1	ENST00000307599	human	ensembl	74_37	-1	known	frame_shift_del	c.1243	p.T415fs	0.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	-	no_errors	GOT1L1	HGNC	ENSG00000169154				196	0	0	119	38	24.2038
WHSC1L1	0	genome.wustl.edu	37	8	38187221	38187222	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	38187221	38187222	-	T	INS	WHSC1L1	ENST00000317025	human	ensembl	74_37	-1	known	frame_shift_ins	c.1256_1255	p.T419fs	0.993:0.976	NULL	pfam_PWWP_dom,pfam_SET_dom,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	WHSC1L1	HGNC	ENSG00000147548				119	0	0	118	36	23.3766
CHRNB3	0	genome.wustl.edu	37	8	42587570	42587571	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	42587570	42587571	-	A	INS	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	frame_shift_ins	c.1120_1121	p.K377fs	0.007:0.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432				91	0	0	85	23	21.2963
SPIDR	0	genome.wustl.edu	37	8	48511719	48511720	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	48511719	48511720	-	G	INS	SPIDR	ENST00000297423	human	ensembl	74_37	+1	known	frame_shift_ins	c.1505_1506	p.A504fs	0.530:0.072	NULL	NULL	-	no_errors	SPIDR	HGNC	ENSG00000164808				32	0	0	21	8	27.5862
ANGPT2	0	genome.wustl.edu	37	8	6378798	6378798	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	6378798	6378798	T	-	DEL	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	frame_shift_del	c.700	p.I234fs	0.004	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				108	0	0	116	24	17.1429
ARFGEF1	0	genome.wustl.edu	37	8	68128855	68128856	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	68128855	68128856	-	G	INS	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	frame_shift_ins	c.4656_4655	p.P1553fs	0.000:0.000	NULL	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				125	0	0	100	11	9.90991
E2F5	0	genome.wustl.edu	37	8	86127123	86127123	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	86127123	86127123	A	-	DEL	E2F5	ENST00000519128	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	E2F5	HGNC	ENSG00000133740				13	0	0	18	6	25
CA2	0	genome.wustl.edu	37	8	86386635	86386635	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	86386635	86386635	T	-	DEL	CA2	ENST00000285379	human	ensembl	74_37	+1	known	frame_shift_del	c.434	p.L147fs	0.362	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA2	HGNC	ENSG00000104267				250	0	0	169	43	20.283
TMEM67	0	genome.wustl.edu	37	8	94828723	94828723	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	94828723	94828723	A	-	DEL	TMEM67	ENST00000463467	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.614	-	-	-	no_errors	TMEM67	HGNC	ENSG00000164953				43	0	0	31	29	48.3333
PLEKHF2	0	genome.wustl.edu	37	8	96167002	96167004	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	8	96167002	96167004	GAT	-	DEL	PLEKHF2	ENST00000315367	human	ensembl	74_37	+1	known	in_frame_del	c.730_732	p.D246in_frame_del	1.000:1.000:0.994	NULL	pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_Znf_FYVE_PHD,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel	-	no_errors	PLEKHF2	HGNC	ENSG00000175895				161	0	0	126	11	8.0292
INVS	0	genome.wustl.edu	37	9	103055250	103055251	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	103055250	103055251	AG	-	DEL	INVS	ENST00000262457	human	ensembl	74_37	+1	known	frame_shift_del	c.2711_2712	p.E906fs	1.000:0.996	superfamily_P-loop_NTPase	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				125	0	0	41	26	38.806
SMC2	0	genome.wustl.edu	37	9	106885501	106885501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	106885501	106885501	A	-	DEL	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	frame_shift_del	c.2245	p.T751fs	0.998	superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				112	0	0	43	18	29.5082
IKBKAP	0	genome.wustl.edu	37	9	111668653	111668653	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	111668653	111668653	G	-	DEL	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	frame_shift_del	c.1573	p.R525fs	0.088	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061				153	0	0	50	22	30.5556
PALM2-AKAP2	0	genome.wustl.edu	37	9	112900483	112900483	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	112900483	112900483	C	-	DEL	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	frame_shift_del	c.2659	p.Q889fs	0.001	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				58	0	0	18	11	37.931
KIAA0368	0	genome.wustl.edu	37	9	114131416	114131416	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	114131416	114131416	T	-	DEL	KIAA0368	ENST00000259335	human	ensembl	74_37	-1	known	frame_shift_del	c.5546	p.N1849fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813				55	0	0	43	13	23.2143
FKBP15	0	genome.wustl.edu	37	9	115941001	115941002	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	115941001	115941002	-	T	INS	FKBP15	ENST00000238256	human	ensembl	74_37	-1	known	frame_shift_ins	c.1995_1994	p.E666fs	0.985:1.000	superfamily_Regulat_G_prot_signal_superfam	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321				25	0	0	13	7	35
CDK5RAP2	0	genome.wustl.edu	37	9	123223027	123223027	+	Splice_Site	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	123223027	123223027	T	-	DEL	CDK5RAP2	ENST00000480112	human	ensembl	74_37	-1	known	splice_site_del	c.2104-2	e19-2	0.979	-	-	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				15	0	0	24	6	20
DAB2IP	0	genome.wustl.edu	37	9	124536637	124536637	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	124536637	124536637	C	-	DEL	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	frame_shift_del	c.3066	p.H1025fs	0.988	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				71	0	0	12	3	20
RABGAP1	0	genome.wustl.edu	37	9	125861042	125861042	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	125861042	125861042	A	-	DEL	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	frame_shift_del	c.2782	p.N930fs	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				148	0	0	38	21	35.5932
LAMC3	0	genome.wustl.edu	37	9	133932467	133932467	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	133932467	133932467	G	-	DEL	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	frame_shift_del	c.2091	p.G699fs	0.003	smart_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				321	0	0	95	27	22.1311
TTF1	0	genome.wustl.edu	37	9	135277201	135277202	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	135277201	135277202	-	T	INS	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	frame_shift_ins	c.1008_1007	p.K337fs	0.902:0.912	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				250	0	0	118	44	27.1605
GTF3C4	0	genome.wustl.edu	37	9	135554691	135554691	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	135554691	135554691	A	-	DEL	GTF3C4	ENST00000372146	human	ensembl	74_37	+1	known	frame_shift_del	c.1685	p.K564fs	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484				244	0	0	103	52	33.5484
RALGDS	0	genome.wustl.edu	37	9	135975666	135975667	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	135975666	135975667	GA	-	DEL	RALGDS	ENST00000542690	human	ensembl	74_37	-1	known	frame_shift_del	c.2771_2770	p.S924fs	1.000:1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RALGDS	HGNC	ENSG00000160271				721	0	0	194	55	22.0884
ABCA2	0	genome.wustl.edu	37	9	139923312	139923312	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	139923312	139923312	T	-	DEL	ABCA2	ENST00000459850	human	ensembl	74_37	-1	known	frame_shift_del	c.13	p.T5fs	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331				70	0	0	17	7	29.1667
CNTLN	0	genome.wustl.edu	37	9	17135271	17135271	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	17135271	17135271	G	-	DEL	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	frame_shift_del	c.208	p.A72fs	0.002	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				31	0	0	7	3	30
MLLT3	0	genome.wustl.edu	37	9	20622295	20622295	+	RNA	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	20622295	20622295	C	-	DEL	MLLT3	ENST00000475957	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843				36	0	0	15	2	11.7647
FOCAD	0	genome.wustl.edu	37	9	20862797	20862798	+	RNA	INS	-	-	TGT			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	20862797	20862798	-	TGT	INS	FOCAD	ENST00000603844	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.008	-	-	-	no_errors	FOCAD	HGNC	ENSG00000188352				34	0	0	24	12	33.3333
DDX58	0	genome.wustl.edu	37	9	32459462	32459462	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	32459462	32459462	T	-	DEL	DDX58	ENST00000379883	human	ensembl	74_37	-1	known	frame_shift_del	c.2388	p.K796fs	0.022	superfamily_P-loop_NTPase	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201				59	0	0	39	23	37.0968
DCTN3	0	genome.wustl.edu	37	9	34615897	34615898	+	RNA	DEL	AA	AA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	34615897	34615898	AA	-	DEL	DCTN3	ENST00000479399	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008:0.011	-	-	-	no_errors	DCTN3	HGNC	ENSG00000137100				14	0	0	7	6	46.1538
ARHGEF39	0	genome.wustl.edu	37	9	35661988	35661988	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	35661988	35661988	T	-	DEL	ARHGEF39	ENST00000378387	human	ensembl	74_37	-1	known	frame_shift_del	c.1004	p.N335fs	0.905	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF39	HGNC	ENSG00000137135				120	0	0	112	8	6.66667
GLIPR2	0	genome.wustl.edu	37	9	36147846	36147847	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	36147846	36147847	-	C	INS	GLIPR2	ENST00000377960	human	ensembl	74_37	+1	known	frame_shift_ins	c.77_78	p.L29fs	0.856:0.893	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	GLIPR2	HGNC	ENSG00000122694				624	0	0	188	72	27.6923
ZCCHC7	0	genome.wustl.edu	37	9	37126641	37126642	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	37126641	37126642	-	G	INS	ZCCHC7	ENST00000336755	human	ensembl	74_37	+1	known	frame_shift_ins	c.312_313	p.N106fs	0.999:0.996	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC7	HGNC	ENSG00000147905				331	0	0	147	87	37.1795
DOCK8	0	genome.wustl.edu	37	9	405015	405015	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	405015	405015	T	-	DEL	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	frame_shift_del	c.3332	p.F1113fs	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				76	0	0	47	24	33.8028
KDM4C	0	genome.wustl.edu	37	9	7169999	7169999	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	7169999	7169999	A	-	DEL	KDM4C	ENST00000381306	human	ensembl	74_37	+1	known	frame_shift_del	c.3103	p.S1037fs	0.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077				11	0	0	14	5	26.3158
SMC5	0	genome.wustl.edu	37	9	72959271	72959271	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	72959271	72959271	A	-	DEL	SMC5	ENST00000475540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	SMC5	HGNC	ENSG00000198887				17	0	0	7	4	36.3636
KANK1	0	genome.wustl.edu	37	9	734666	734666	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	734666	734666	A	-	DEL	KANK1	ENST00000489369	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	KANK1	HGNC	ENSG00000107104				20	0	0	15	4	21.0526
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				21	0	0	15	3	16.6667
GPC4	0	genome.wustl.edu	37	X	132439923	132439923	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	132439923	132439923	G	-	DEL	GPC4	ENST00000370828	human	ensembl	74_37	-1	known	frame_shift_del	c.1032	p.K345fs	0.073	pfam_Glypican	pfam_Glypican	-	no_errors	GPC4	HGNC	ENSG00000076716				651	0	0	226	82	26.6234
SLC6A8	0	genome.wustl.edu	37	X	152958488	152958488	+	RNA	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	152958488	152958488	C	-	DEL	SLC6A8	ENST00000485324	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC6A8	HGNC	ENSG00000130821				116	0	0	21	9	30
PDZD4	0	genome.wustl.edu	37	X	153095870	153095871	+	RNA	INS	-	-	G			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	153095870	153095871	-	G	INS	PDZD4	ENST00000480418	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.296:0.311	-	-	-	no_errors	PDZD4	HGNC	ENSG00000067840				57	0	0	14	4	22.2222
MAGEB3	0	genome.wustl.edu	37	X	30254466	30254466	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	30254466	30254466	A	-	DEL	MAGEB3	ENST00000361644	human	ensembl	74_37	+1	known	frame_shift_del	c.425	p.S144fs	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB3	HGNC	ENSG00000198798				164	0	0	86	31	26.4957
MAGEB4	0	genome.wustl.edu	37	X	30260427	30260427	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	30260427	30260427	C	-	DEL	MAGEB4	ENST00000378982	human	ensembl	74_37	+1	known	frame_shift_del	c.175	p.Q60fs	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB4	HGNC	ENSG00000120289				83	0	0	31	13	29.5455
DMD	0	genome.wustl.edu	37	X	33229458	33229458	+	RNA	DEL	A	A	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	33229458	33229458	A	-	DEL	DMD	ENST00000463609	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	DMD	HGNC	ENSG00000198947				37	0	0	18	8	30.7692
MED14	0	genome.wustl.edu	37	X	40588606	40588607	+	RNA	DEL	AA	AA	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	40588606	40588607	AA	-	DEL	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MED14	HGNC	ENSG00000180182				77	0	0	29	12	29.2683
USP9X	0	genome.wustl.edu	37	X	41060495	41060497	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	41060495	41060497	GAT	-	DEL	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	in_frame_del	c.4786_4788	p.D1598in_frame_del	1.000:1.000:1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				157	0	0	73	34	31.7757
CCNB3	0	genome.wustl.edu	37	X	50028182	50028182	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	50028182	50028182	C	-	DEL	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	frame_shift_del	c.19	p.Q8fs	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				89	0	0	58	21	26.5823
ZMYM3	0	genome.wustl.edu	37	X	70472854	70472854	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8368-01A-11D-2340-08	TCGA-BR-8368-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	165fd192-39c7-4c1d-8313-eb7fb6b129fa	3150c947-69a6-4b74-9fbd-fabef76e9a5f	X	70472854	70472854	C	-	DEL	ZMYM3	ENST00000373988	human	ensembl	74_37	-1	known	frame_shift_del	c.252	p.L85fs	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM3	HGNC	ENSG00000147130				112	0	0	19	21	52.5
