Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PPIAL4A	0	genome.wustl.edu	37	1	147955256	147955256	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	1	147955256	147955256	A	G	SNP	PPIAL4A	ENST00000539781	human	ensembl	74_37	-1	known	missense	c.89	p.L30P	0.972	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIAL4A	HGNC	ENSG00000255963				25	0	0	13	6	31.5789
SPTA1	0	genome.wustl.edu	37	1	158605726	158605726	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	1	158605726	158605726	C	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.5409	p.K1803N	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				251	1	0.396825	74	34	31.4815
FCRL6	0	genome.wustl.edu	37	1	159779403	159779403	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	1	159779403	159779403	G	A	SNP	FCRL6	ENST00000368106	human	ensembl	74_37	+1	known	silent	c.816	p.G272	0.029	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL6	HGNC	ENSG00000181036				95	0	0	35	11	23.913
RPL31P11	0	genome.wustl.edu	37	1	161654693	161654693	+	RNA	SNP	A	A	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	1	161654693	161654693	A	G	SNP	RPL31P11	ENST00000426558	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL31P11	HGNC	ENSG00000213075				55	0	0	36	4	10
ANKRD45	0	genome.wustl.edu	37	1	173628361	173628361	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	1	173628361	173628361	G	A	SNP	ANKRD45	ENST00000333279	human	ensembl	74_37	-1	known	missense	c.197	p.A66V	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD45	HGNC	ENSG00000183831				104	0	0	44	31	41.3333
CACNA1E	0	genome.wustl.edu	37	1	181759657	181759657	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	1	181759657	181759657	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.5863	p.A1955T	0.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				93	0	0	34	3	8.10811
LAD1	0	genome.wustl.edu	37	1	201355485	201355485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	1	201355485	201355485	C	T	SNP	LAD1	ENST00000367313	human	ensembl	74_37	-1	known	missense	c.1046	p.R349H	0.165	pirsf_Ladinin_1	pirsf_Ladinin_1	-	no_errors	LAD1	HGNC	ENSG00000159166				12	0	0	11	5	31.25
TRAF3IP3	0	genome.wustl.edu	37	1	209933490	209933490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	1	209933490	209933490	C	T	SNP	TRAF3IP3	ENST00000367024	human	ensembl	74_37	+1	known	missense	c.106	p.R36C	1.000	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790				73	0	0	31	10	24.3902
ZBTB40	0	genome.wustl.edu	37	1	22816908	22816908	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	1	22816908	22816908	A	G	SNP	ZBTB40	ENST00000375647	human	ensembl	74_37	+1	known	missense	c.467	p.E156G	0.097	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677				401	0	0	141	34	19.4286
OBSCN	0	genome.wustl.edu	37	1	228430947	228430947	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	1	228430947	228430947	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.2993	p.A998G	0.015	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				75	0	0	8	8	50
ABCD3	0	genome.wustl.edu	37	1	94956791	94956791	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	1	94956791	94956791	C	T	SNP	ABCD3	ENST00000454898	human	ensembl	74_37	+1	known	silent	c.1446	p.D482	1.000	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like,tigrfam_FA_transporter	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	-	no_errors	ABCD3	HGNC	ENSG00000117528				60	0	0	30	3	9.09091
DUSP5	0	genome.wustl.edu	37	10	112257894	112257894	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	10	112257894	112257894	G	A	SNP	DUSP5	ENST00000369583	human	ensembl	74_37	+1	known	silent	c.15	p.S5	1.000	superfamily_Rhodanese-like_dom,pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP5	HGNC	ENSG00000138166				50	0	0	10	5	33.3333
TDRD1	0	genome.wustl.edu	37	10	115947870	115947870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	10	115947870	115947870	G	A	SNP	TDRD1	ENST00000251864	human	ensembl	74_37	+1	known	missense	c.280	p.G94R	0.740	NULL	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627				185	0	0	83	5	5.68182
PDZD8	0	genome.wustl.edu	37	10	119044050	119044050	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	10	119044050	119044050	C	A	SNP	PDZD8	ENST00000334464	human	ensembl	74_37	-1	known	missense	c.2194	p.V732F	0.556	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650				102	0	0	52	16	23.5294
LRRC37A6P	0	genome.wustl.edu	37	10	27538569	27538569	+	RNA	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	10	27538569	27538569	G	A	SNP	LRRC37A6P	ENST00000284414	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.042	-	-	-	no_errors	LRRC37A6P	HGNC	ENSG00000230445				298	1	0.334448	179	10	5.29101
CDH23	0	genome.wustl.edu	37	10	73569654	73569654	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	10	73569654	73569654	G	T	SNP	CDH23	ENST00000398788	human	ensembl	74_37	+1	known	missense	c.2080	p.A694S	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				232	0	0	83	32	27.8261
C10orf12	0	genome.wustl.edu	37	10	98744132	98744132	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	10	98744132	98744132	C	T	SNP	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	silent	c.2985	p.A995	0.930	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640				166	0	0	65	32	32.9897
AMPD3	0	genome.wustl.edu	37	11	10515007	10515007	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	10515007	10515007	C	T	SNP	AMPD3	ENST00000396553	human	ensembl	74_37	+1	known	missense	c.1051	p.R351W	0.359	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805				161	0	0	54	18	25
ENSG00000268467	0	genome.wustl.edu	37	11	107463126	107463126	+	Silent	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	107463126	107463126	G	T	SNP	ENSG00000268467	ENST00000600612	human	ensembl	74_37	+1	known	silent	c.324	p.G108	1.000	NULL	NULL	-	no_errors	AP000889.3	Clone_based_ensembl_gene	ENSG00000268467				58	0	0	14	5	26.3158
OPCML	0	genome.wustl.edu	37	11	132290035	132290035	+	RNA	SNP	A	A	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	132290035	132290035	A	T	SNP	OPCML	ENST00000529038	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	OPCML	HGNC	ENSG00000183715				75	0	0	32	9	21.9512
NELL1	0	genome.wustl.edu	37	11	20907026	20907026	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	20907026	20907026	C	A	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	missense	c.543	p.N181K	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973				78	0	0	56	12	17.6471
ACCSL	0	genome.wustl.edu	37	11	44077864	44077864	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	44077864	44077864	C	A	SNP	ACCSL	ENST00000378832	human	ensembl	74_37	+1	known	missense	c.1315	p.L439I	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCSL	HGNC	ENSG00000205126				32	0	0	28	4	12.5
FOLH1	0	genome.wustl.edu	37	11	49208203	49208203	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	49208203	49208203	C	A	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	missense	c.632	p.G211V	1.000	pfam_Protease-assoc_domain	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205				82	0	0	52	6	10.3448
HBG1	0	genome.wustl.edu	37	11	5269687	5269687	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	5269687	5269687	C	A	SNP	HBG1	ENST00000330597	human	ensembl	74_37	-1	known	missense	c.346	p.A116S	0.534	superfamily_Globin-like,pfscan_Globin	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_b,prints_Myoglobin	-	no_errors	HBG1	HGNC	ENSG00000213934				59	0	0	23	9	28.125
OR5T2	0	genome.wustl.edu	37	11	56000542	56000542	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	56000542	56000542	G	T	SNP	OR5T2	ENST00000313264	human	ensembl	74_37	-1	known	missense	c.120	p.F40L	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T2	HGNC	ENSG00000181718				93	0	0	68	25	26.8817
YPEL4	0	genome.wustl.edu	37	11	57413862	57413862	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	57413862	57413862	C	T	SNP	YPEL4	ENST00000300022	human	ensembl	74_37	-1	known	missense	c.202	p.G68R	1.000	pfam_Yippee/Mis18	pfam_Yippee/Mis18	-	no_errors	YPEL4	HGNC	ENSG00000166793				107	0	0	35	5	12.5
FOLH1B	0	genome.wustl.edu	37	11	89391905	89391905	+	RNA	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	89391905	89391905	G	T	SNP	FOLH1B	ENST00000526379	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612				42	0	0	27	6	18.1818
WEE1	0	genome.wustl.edu	37	11	9610042	9610042	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	9610042	9610042	G	T	SNP	WEE1	ENST00000450114	human	ensembl	74_37	+1	known	missense	c.1834	p.A612S	1.000	superfamily_Kinase-like_dom,pirsf_Wee1-like_protein_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	-	no_errors	WEE1	HGNC	ENSG00000166483				141	0	0	57	23	28.75
HVCN1	0	genome.wustl.edu	37	12	111099055	111099055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	12	111099055	111099055	C	T	SNP	HVCN1	ENST00000242607	human	ensembl	74_37	-1	known	missense	c.220	p.V74I	0.000	NULL	pfam_Ion_trans_dom	-	no_errors	HVCN1	HGNC	ENSG00000122986				114	0	0	48	16	25
GCN1L1	0	genome.wustl.edu	37	12	120600695	120600695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	12	120600695	120600695	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	missense	c.2119	p.D707N	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				108	0	0	44	36	45
RSRC2	0	genome.wustl.edu	37	12	123011437	123011437	+	RNA	SNP	T	T	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	12	123011437	123011437	T	C	SNP	RSRC2	ENST00000527461	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	RSRC2	HGNC	ENSG00000111011				138	0	0	53	6	10.1695
TMEM132D	0	genome.wustl.edu	37	12	129559375	129559375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	12	129559375	129559375	C	T	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.2345	p.R782Q	1.000	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				182	0	0	110	30	21.4286
LINC00477	0	genome.wustl.edu	37	12	24736768	24736768	+	RNA	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	12	24736768	24736768	C	A	SNP	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				111	0	0	56	13	18.8406
KRAS	0	genome.wustl.edu	37	12	25380275	25380275	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	12	25380275	25380275	T	G	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.183	p.Q61H	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				90	0	0	50	23	31.5068
LRP1	0	genome.wustl.edu	37	12	57572341	57572341	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	12	57572341	57572341	C	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.4561	p.Q1521K	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				202	0	0	55	50	47.619
MON2	0	genome.wustl.edu	37	12	62954269	62954269	+	Splice_Site	SNP	A	A	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	12	62954269	62954269	A	T	SNP	MON2	ENST00000393630	human	ensembl	74_37	+1	known	splice_site	c.3413-2	e27-2	0.986	-	-	-	no_errors	MON2	HGNC	ENSG00000061987				120	0	0	112	6	5.08475
CD27	0	genome.wustl.edu	37	12	6560573	6560573	+	RNA	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	12	6560573	6560573	G	T	SNP	CD27	ENST00000541233	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CD27	HGNC	ENSG00000139193				48	0	0	29	3	9.375
NOP2	0	genome.wustl.edu	37	12	6670140	6670140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	12	6670140	6670140	G	A	SNP	NOP2	ENST00000322166	human	ensembl	74_37	-1	known	missense	c.1304	p.T435I	1.000	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,tigrfam_Nop2p	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641				60	0	0	19	4	17.3913
CHD4	0	genome.wustl.edu	37	12	6692406	6692406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	12	6692406	6692406	G	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.4018	p.R1340C	1.000	pfam_DUF1087	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				335	0	0	73	140	65.7277
RASA3	0	genome.wustl.edu	37	13	114780806	114780806	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	13	114780806	114780806	C	T	SNP	RASA3	ENST00000334062	human	ensembl	74_37	-1	known	silent	c.1284	p.E428	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA3	HGNC	ENSG00000185989				127	0	0	32	9	21.9512
ATP8A2	0	genome.wustl.edu	37	13	26106423	26106423	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	13	26106423	26106423	C	A	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	missense	c.434	p.A145E	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				69	0	0	30	5	14.2857
EEF1DP3	0	genome.wustl.edu	37	13	32527529	32527529	+	RNA	SNP	A	A	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	13	32527529	32527529	A	G	SNP	EEF1DP3	ENST00000428783	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	EEF1DP3	HGNC	ENSG00000229715				62	0	0	30	3	9.09091
COMMD6	0	genome.wustl.edu	37	13	76111694	76111694	+	RNA	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	13	76111694	76111694	G	C	SNP	COMMD6	ENST00000471682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COMMD6	HGNC	ENSG00000188243				21	0	0	4	8	66.6667
PRKD1	0	genome.wustl.edu	37	14	30068863	30068863	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	14	30068863	30068863	T	C	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	missense	c.2066	p.Q689R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				130	0	0	79	14	15.0538
AK7	0	genome.wustl.edu	37	14	96904253	96904253	+	Splice_Site	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	14	96904253	96904253	G	A	SNP	AK7	ENST00000267584	human	ensembl	74_37	+1	known	splice_site	c.690+1	e6+1	1.000	-	-	-	no_errors	AK7	HGNC	ENSG00000140057				66	0	0	24	10	29.4118
TP53BP1	0	genome.wustl.edu	37	15	43712659	43712659	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	15	43712659	43712659	C	A	SNP	TP53BP1	ENST00000382044	human	ensembl	74_37	-1	known	missense	c.4525	p.G1509W	1.000	pfam_53-BP1_Tudor	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369				456	0	0	108	130	54.6218
SH3GL3	0	genome.wustl.edu	37	15	84255786	84255786	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	15	84255786	84255786	C	T	SNP	SH3GL3	ENST00000324537	human	ensembl	74_37	+1	known	missense	c.700	p.H234Y	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	SH3GL3	HGNC	ENSG00000140600				31	0	0	11	7	38.8889
AQP8	0	genome.wustl.edu	37	16	25228603	25228603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	16	25228603	25228603	C	T	SNP	AQP8	ENST00000219660	human	ensembl	74_37	+1	known	missense	c.97	p.R33W	0.735	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_8	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_8,prints_MIP	-	no_errors	AQP8	HGNC	ENSG00000103375				503	0	0	176	39	18.1395
HERC2P4	0	genome.wustl.edu	37	16	32163525	32163525	+	RNA	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	16	32163525	32163525	G	A	SNP	HERC2P4	ENST00000563904	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.823	-	-	-	no_errors	HERC2P4	HGNC	ENSG00000230267				76	0	0	55	6	9.83607
CAPN15	0	genome.wustl.edu	37	16	597504	597504	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	16	597504	597504	C	T	SNP	CAPN15	ENST00000219611	human	ensembl	74_37	+1	known	silent	c.666	p.A222	0.000	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Peptidase_C2_calpain_cat,pfscan_Znf_RanBP2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN15	HGNC	ENSG00000103326				64	0	0	14	2	12.5
RLTPR	0	genome.wustl.edu	37	16	67683840	67683840	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	16	67683840	67683840	G	T	SNP	RLTPR	ENST00000334583	human	ensembl	74_37	+1	known	missense	c.2051	p.R684L	0.998	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753				48	0	0	27	4	12.9032
CDH1	0	genome.wustl.edu	37	16	68844181	68844181	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	16	68844181	68844181	G	A	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.769	p.D257N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				224	0	0	54	52	49.0566
WWOX	0	genome.wustl.edu	37	16	78420768	78420768	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	16	78420768	78420768	G	T	SNP	WWOX	ENST00000566780	human	ensembl	74_37	+1	known	missense	c.528	p.K176N	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_WW_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom,prints_Glc/ribitol_DH	-	no_errors	WWOX	HGNC	ENSG00000186153				128	0	0	54	12	18.1818
IL17C	0	genome.wustl.edu	37	16	88705717	88705717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	16	88705717	88705717	G	A	SNP	IL17C	ENST00000244241	human	ensembl	74_37	+1	known	missense	c.335	p.R112H	1.000	pfam_IL-17_fam,prints_IL-17_chr	pfam_IL-17_fam,prints_IL-17_chr	-	no_errors	IL17C	HGNC	ENSG00000124391				30	0	0	9	4	30.7692
TMEM199	0	genome.wustl.edu	37	17	26686415	26686415	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	17	26686415	26686415	C	T	SNP	TMEM199	ENST00000509083	human	ensembl	74_37	+1	known	silent	c.363	p.N121	0.995	pfam_ATPase_Vma12	pfam_ATPase_Vma12	-	no_errors	TMEM199	HGNC	ENSG00000244045				89	0	0	33	13	28.2609
NF1	0	genome.wustl.edu	37	17	29662040	29662040	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	17	29662040	29662040	C	T	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	silent	c.5997	p.S1999	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				78	0	0	43	8	15.6863
KRTAP9-2	0	genome.wustl.edu	37	17	39383335	39383335	+	Silent	SNP	C	C	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	17	39383335	39383335	C	G	SNP	KRTAP9-2	ENST00000377721	human	ensembl	74_37	+1	known	silent	c.429	p.P143	0.740	NULL	NULL	-	no_errors	KRTAP9-2	HGNC	ENSG00000239886				132	0	0	48	3	5.88235
LOC100505782	0	genome.wustl.edu	37	17	39580816	39580816	+	RNA	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	17	39580816	39580816	G	C	SNP	LOC100505782	ENST00000432258	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AC003958.2	Clone_based_vega_gene	ENSG00000234859				91	0	0	38	4	9.52381
MAPT	0	genome.wustl.edu	37	17	44073913	44073913	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	17	44073913	44073913	G	A	SNP	MAPT	ENST00000344290	human	ensembl	74_37	+1	known	silent	c.1710	p.S570	0.905	NULL	pfam_MAP_tubulin-bd_rpt,prints_Tau	-	no_errors	MAPT	HGNC	ENSG00000186868				46	0	0	19	10	34.4828
GRIN2C	0	genome.wustl.edu	37	17	72846372	72846372	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	17	72846372	72846372	G	A	SNP	GRIN2C	ENST00000293190	human	ensembl	74_37	-1	known	silent	c.1464	p.R488	0.550	pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509				199	0	0	85	27	24.1071
DYNAP	0	genome.wustl.edu	37	18	52265293	52265293	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	18	52265293	52265293	G	T	SNP	DYNAP	ENST00000321600	human	ensembl	74_37	+1	known	missense	c.550	p.A184S	0.000	NULL	NULL	-	no_errors	DYNAP	HGNC	ENSG00000178690				172	0	0	61	12	16.4384
TNFRSF11A	0	genome.wustl.edu	37	18	60027241	60027241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	18	60027241	60027241	C	T	SNP	TNFRSF11A	ENST00000586569	human	ensembl	74_37	+1	known	missense	c.575	p.A192V	0.999	smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11A,prints_TNFR_11	-	no_errors	TNFRSF11A	HGNC	ENSG00000141655				149	0	0	49	4	7.54717
LAMA1	0	genome.wustl.edu	37	18	7049076	7049076	+	Splice_Site	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	18	7049076	7049076	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	splice_site	c.768+1	e5+1	1.000	-	-	-	no_errors	LAMA1	HGNC	ENSG00000101680				143	1	0.694444	49	32	39.5062
ATP9B	0	genome.wustl.edu	37	18	77096644	77096644	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	18	77096644	77096644	G	C	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	missense	c.2045	p.R682P	0.832	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				56	0	0	7	12	63.1579
WDR83OS	0	genome.wustl.edu	37	19	12779424	12779424	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	12779424	12779424	C	T	SNP	WDR83OS	ENST00000596731	human	ensembl	74_37	-1	known	nonsense	c.164	p.W55*	1.000	pfam_UPF0139	pfam_UPF0139	-	no_errors	WDR83OS	HGNC	ENSG00000105583				64	0	0	30	13	30.2326
EPHX3	0	genome.wustl.edu	37	19	15342889	15342889	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	15342889	15342889	G	A	SNP	EPHX3	ENST00000221730	human	ensembl	74_37	-1	known	missense	c.134	p.T45M	0.279	NULL	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX3	HGNC	ENSG00000105131				20	0	0	6	4	40
ZNF85	0	genome.wustl.edu	37	19	21131567	21131567	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	21131567	21131567	G	C	SNP	ZNF85	ENST00000328178	human	ensembl	74_37	+1	known	missense	c.247	p.A83P	0.050	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF85	HGNC	ENSG00000105750				166	0	0	83	19	18.6275
ZNF728	0	genome.wustl.edu	37	19	23159779	23159779	+	Silent	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	23159779	23159779	C	A	SNP	ZNF728	ENST00000594710	human	ensembl	74_37	-1	novel	silent	c.360	p.V120	0.022	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF728	HGNC	ENSG00000269067				78	0	0	46	13	22.0339
ZNF555	0	genome.wustl.edu	37	19	2852504	2852504	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	2852504	2852504	G	A	SNP	ZNF555	ENST00000334241	human	ensembl	74_37	+1	known	silent	c.441	p.T147	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF555	HGNC	ENSG00000186300				132	0	0	71	7	8.97436
ANKRD24	0	genome.wustl.edu	37	19	4216835	4216835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	4216835	4216835	G	A	SNP	ANKRD24	ENST00000318934	human	ensembl	74_37	+1	known	missense	c.1678	p.E560K	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847				31	0	0	13	2	13.3333
PSG4	0	genome.wustl.edu	37	19	43709647	43709647	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	43709647	43709647	G	A	SNP	PSG4	ENST00000405312	human	ensembl	74_37	-1	known	silent	c.42	p.T14	0.215	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG4	HGNC	ENSG00000243137				81	0	0	47	8	14.5455
BAX	0	genome.wustl.edu	37	19	49464847	49464847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	49464847	49464847	C	T	SNP	BAX	ENST00000345358	human	ensembl	74_37	+1	known	missense	c.533	p.A178V	0.870	NULL	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAX	HGNC	ENSG00000087088				28	0	0	9	4	30.7692
KLK13	0	genome.wustl.edu	37	19	51563819	51563819	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	51563819	51563819	G	T	SNP	KLK13	ENST00000595793	human	ensembl	74_37	-1	known	missense	c.110	p.P37Q	0.961	superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK13	HGNC	ENSG00000167759				200	0	0	133	7	5
TMC4	0	genome.wustl.edu	37	19	54676754	54676754	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	54676754	54676754	G	C	SNP	TMC4	ENST00000301187	human	ensembl	74_37	-1	known	missense	c.59	p.A20G	0.989	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608				390	1	0.255754	153	44	22.335
KIR3DL1	0	genome.wustl.edu	37	19	55329854	55329854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	55329854	55329854	G	A	SNP	KIR3DL1	ENST00000402254	human	ensembl	74_37	+1	known	missense	c.155	p.R52H	0.000	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL1	HGNC	ENSG00000167633				32	0	0	28	5	15.1515
KIR3DL1	0	genome.wustl.edu	37	19	55329892	55329892	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	55329892	55329892	A	G	SNP	KIR3DL1	ENST00000402254	human	ensembl	74_37	+1	known	missense	c.193	p.R65G	0.000	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL1	HGNC	ENSG00000167633				32	0	0	15	4	21.0526
ZNF805	0	genome.wustl.edu	37	19	57765432	57765432	+	Silent	SNP	A	A	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	57765432	57765432	A	G	SNP	ZNF805	ENST00000414468	human	ensembl	74_37	+1	known	silent	c.1245	p.K415	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524				67	0	0	60	4	6.25
ZNF606	0	genome.wustl.edu	37	19	58512020	58512020	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	58512020	58512020	C	A	SNP	ZNF606	ENST00000546715	human	ensembl	74_37	-1	putative	missense	c.119	p.C40F	0.000	NULL	NULL	-	no_errors	ZNF606	HGNC	ENSG00000166704				102	0	0	33	11	25
C3	0	genome.wustl.edu	37	19	6707512	6707512	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	6707512	6707512	C	T	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.2012	p.R671H	0.984	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				212	0	0	72	15	17.2414
OR7D2	0	genome.wustl.edu	37	19	9296503	9296503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	9296503	9296503	G	A	SNP	OR7D2	ENST00000344248	human	ensembl	74_37	+1	known	missense	c.46	p.G16R	0.177	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D2	HGNC	ENSG00000188000				65	0	0	36	29	44.6154
ZNF560	0	genome.wustl.edu	37	19	9578204	9578204	+	Silent	SNP	T	T	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	19	9578204	9578204	T	C	SNP	ZNF560	ENST00000301480	human	ensembl	74_37	-1	known	silent	c.1419	p.S473	0.006	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028				358	0	0	243	49	16.7808
CNTNAP5	0	genome.wustl.edu	37	2	125204502	125204502	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	2	125204502	125204502	C	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.906	p.D302E	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				121	1	0.819672	42	12	22.2222
LOC150776	0	genome.wustl.edu	37	2	132275343	132275343	+	RNA	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	2	132275343	132275343	G	T	SNP	LOC150776	ENST00000438378	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC093838.4	Clone_based_vega_gene	ENSG00000152117				68	0	0	22	4	15.3846
TTN	0	genome.wustl.edu	37	2	179419223	179419223	+	Silent	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	2	179419223	179419223	G	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.81147	p.G27049	0.244	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				45	0	0	21	6	22.2222
TTN	0	genome.wustl.edu	37	2	179605938	179605938	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	2	179605938	179605938	G	C	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.11509	p.L3837V	0.849	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				132	0	0	118	17	12.5926
NEUROD1	0	genome.wustl.edu	37	2	182542847	182542847	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	2	182542847	182542847	G	A	SNP	NEUROD1	ENST00000295108	human	ensembl	74_37	-1	known	silent	c.741	p.H247	0.995	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD1	HGNC	ENSG00000162992				163	0	0	64	21	24.7059
ERBB4	0	genome.wustl.edu	37	2	212543834	212543834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	2	212543834	212543834	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.1565	p.S522L	0.997	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				46	0	0	19	10	34.4828
STK11IP	0	genome.wustl.edu	37	2	220473355	220473355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	2	220473355	220473355	G	A	SNP	STK11IP	ENST00000456909	human	ensembl	74_37	+1	novel	missense	c.1654	p.V552I	0.000	NULL	NULL	-	no_errors	STK11IP	HGNC	ENSG00000144589				72	0	0	41	4	8.88889
CCDC142	0	genome.wustl.edu	37	2	74709311	74709311	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	2	74709311	74709311	T	G	SNP	CCDC142	ENST00000393965	human	ensembl	74_37	-1	known	missense	c.654	p.K218N	0.000	NULL	NULL	-	no_errors	CCDC142	HGNC	ENSG00000135637				172	0	0	14	5	26.3158
ASTL	0	genome.wustl.edu	37	2	96795681	96795681	+	Silent	SNP	T	T	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	2	96795681	96795681	T	C	SNP	ASTL	ENST00000342380	human	ensembl	74_37	-1	known	silent	c.756	p.T252	0.004	pfam_Peptidase_M12A	pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	-	no_errors	ASTL	HGNC	ENSG00000188886				113	1	0.877193	36	16	30.7692
PYGB	0	genome.wustl.edu	37	20	25259006	25259006	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	20	25259006	25259006	G	T	SNP	PYGB	ENST00000216962	human	ensembl	74_37	+1	known	missense	c.907	p.A303S	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994				108	0	0	31	3	8.82353
TMC2	0	genome.wustl.edu	37	20	2575516	2575516	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	20	2575516	2575516	C	A	SNP	TMC2	ENST00000358864	human	ensembl	74_37	+1	known	missense	c.979	p.Q327K	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488				126	0	0	50	18	26.4706
CPNE1	0	genome.wustl.edu	37	20	34214214	34214214	+	Silent	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	20	34214214	34214214	G	T	SNP	CPNE1	ENST00000317677	human	ensembl	74_37	-1	known	silent	c.1578	p.L526	0.172	NULL	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE1	HGNC	ENSG00000214078				303	0	0	116	12	9.375
JPH2	0	genome.wustl.edu	37	20	42744650	42744650	+	Silent	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	20	42744650	42744650	C	A	SNP	JPH2	ENST00000372980	human	ensembl	74_37	-1	known	silent	c.1665	p.S555	0.002	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH2	HGNC	ENSG00000149596				15	0	0	5	3	37.5
CDH4	0	genome.wustl.edu	37	20	60485655	60485655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	20	60485655	60485655	G	A	SNP	CDH4	ENST00000360469	human	ensembl	74_37	+1	known	missense	c.1366	p.V456M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242				89	0	0	40	4	9.09091
CYYR1	0	genome.wustl.edu	37	21	27945305	27945305	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	21	27945305	27945305	C	T	SNP	CYYR1	ENST00000435845	human	ensembl	74_37	-1	known	silent	c.279	p.P93	0.000	NULL	pfam_CYYR1	-	no_errors	CYYR1	HGNC	ENSG00000166265				56	0	0	21	8	27.5862
CCT8	0	genome.wustl.edu	37	21	30434528	30434528	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	21	30434528	30434528	C	T	SNP	CCT8	ENST00000286788	human	ensembl	74_37	-1	known	missense	c.1133	p.R378Q	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_theta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_theta	-	no_errors	CCT8	HGNC	ENSG00000156261				186	0	0	90	25	21.7391
KRTAP10-3	0	genome.wustl.edu	37	21	45978128	45978128	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	21	45978128	45978128	G	A	SNP	KRTAP10-3	ENST00000391620	human	ensembl	74_37	-1	known	silent	c.471	p.S157	0.007	NULL	NULL	-	no_errors	KRTAP10-3	HGNC	ENSG00000212935				343	0	0	103	33	24.2647
FTCD	0	genome.wustl.edu	37	21	47574136	47574136	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	21	47574136	47574136	C	T	SNP	FTCD	ENST00000359679	human	ensembl	74_37	-1	known	silent	c.165	p.P55	0.000	pfam_Formiminotransferase_N,superfamily_FormiminoTrfase_N/C_subdom,tigrfam_Formiminotransferase_cat	pfam_Formiminotransferase_N,pfam_Formiminotransferase_C,pfam_Cyclodeamin/CycHdrlase,superfamily_FormiminoTrfase_N/C_subdom,superfamily_Cyclodeamin/CycHdrlase,tigrfam_Formiminotransferase_cat	-	no_errors	FTCD	HGNC	ENSG00000160282				121	0	0	39	11	22
ENSG00000206195	0	genome.wustl.edu	37	22	16150993	16150993	+	RNA	SNP	T	T	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	22	16150993	16150993	T	A	SNP	ENSG00000206195	ENST00000413768	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.487	-	-	-	no_errors	AP000525.9	Clone_based_vega_gene	ENSG00000206195				24	0	0	10	4	28.5714
POLR2F	0	genome.wustl.edu	37	22	38352792	38352792	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	22	38352792	38352792	C	T	SNP	POLR2F	ENST00000442738	human	ensembl	74_37	+1	known	silent	c.33	p.D11	0.532	superfamily_Pol_omega/K/RPB6	pfam_Pol_omega/K/RPB6,superfamily_Pol_omega/K/RPB6	-	no_errors	POLR2F	HGNC	ENSG00000100142				115	0	0	43	12	21.8182
ACO2	0	genome.wustl.edu	37	22	41911464	41911464	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	22	41911464	41911464	C	T	SNP	ACO2	ENST00000216254	human	ensembl	74_37	+1	known	silent	c.609	p.G203	1.000	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412				173	0	0	41	13	24.0741
FSTL1	0	genome.wustl.edu	37	3	120128474	120128474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	3	120128474	120128474	G	A	SNP	FSTL1	ENST00000295633	human	ensembl	74_37	-1	known	missense	c.367	p.R123C	0.988	NULL	pfam_Kazal_dom,pfam_Follistatin/Osteonectin_EGF,smart_Fol_N,smart_Kazal_dom,pfscan_EF_hand_dom	-	no_errors	FSTL1	HGNC	ENSG00000163430				123	0	0	35	24	40.678
MED12L	0	genome.wustl.edu	37	3	150834128	150834128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	3	150834128	150834128	G	A	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.103	p.E35K	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				48	0	0	31	9	22.5
IGSF10	0	genome.wustl.edu	37	3	151165492	151165492	+	Silent	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	3	151165492	151165492	C	A	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	silent	c.2277	p.L759	0.004	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				109	0	0	53	13	19.697
EFHB	0	genome.wustl.edu	37	3	19961394	19961394	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	3	19961394	19961394	G	A	SNP	EFHB	ENST00000295824	human	ensembl	74_37	-1	known	silent	c.927	p.Y309	0.990	NULL	pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFHB	HGNC	ENSG00000163576				205	0	0	83	29	25.8929
ULK4	0	genome.wustl.edu	37	3	41288432	41288432	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	3	41288432	41288432	G	A	SNP	ULK4	ENST00000301831	human	ensembl	74_37	-1	known	silent	c.3816	p.A1272	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ULK4	HGNC	ENSG00000168038				41	0	0	13	4	23.5294
NKTR	0	genome.wustl.edu	37	3	42680413	42680413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	3	42680413	42680413	G	A	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	missense	c.3217	p.V1073M	0.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				137	0	0	70	31	30.6931
ATXN7	0	genome.wustl.edu	37	3	63981540	63981540	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	3	63981540	63981540	G	C	SNP	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	missense	c.2042	p.R681T	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				161	0	0	64	11	14.6667
ARL6IP5	0	genome.wustl.edu	37	3	69134225	69134225	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	3	69134225	69134225	C	T	SNP	ARL6IP5	ENST00000273258	human	ensembl	74_37	+1	known	silent	c.27	p.R9	0.930	pfam_Prenylated_rab_accept_PRA1	pfam_Prenylated_rab_accept_PRA1	-	no_errors	ARL6IP5	HGNC	ENSG00000144746				98	0	0	40	13	24.5283
MITF	0	genome.wustl.edu	37	3	70014308	70014308	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	3	70014308	70014308	A	G	SNP	MITF	ENST00000448226	human	ensembl	74_37	+1	known	missense	c.1490	p.D497G	1.000	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MITF	HGNC	ENSG00000187098				115	0	0	55	19	25.6757
BANK1	0	genome.wustl.edu	37	4	102776247	102776247	+	Silent	SNP	T	T	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	4	102776247	102776247	T	C	SNP	BANK1	ENST00000322953	human	ensembl	74_37	+1	known	silent	c.525	p.S175	0.002	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	BANK1	HGNC	ENSG00000153064				77	0	0	43	21	32.8125
TRPC3	0	genome.wustl.edu	37	4	122800956	122800956	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	4	122800956	122800956	C	A	SNP	TRPC3	ENST00000379645	human	ensembl	74_37	-1	known	nonsense	c.2701	p.E901*	1.000	prints_TRPC3_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741				99	0	0	55	16	22.5352
PCDH10	0	genome.wustl.edu	37	4	134076167	134076167	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	4	134076167	134076167	C	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.2786	p.A929D	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				105	0	0	43	14	24.5614
LRBA	0	genome.wustl.edu	37	4	151242451	151242451	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	4	151242451	151242451	G	C	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.7555	p.P2519A	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				129	0	0	71	25	26.0417
HTT	0	genome.wustl.edu	37	4	3134614	3134614	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	4	3134614	3134614	C	T	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	silent	c.2469	p.C823	1.000	superfamily_ARM-type_fold	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				253	0	0	107	43	28.6667
LOC101930019	0	genome.wustl.edu	37	4	758712	758712	+	RNA	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	4	758712	758712	G	A	SNP	LOC101930019	ENST00000454037	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AC139887.4	Clone_based_vega_gene	ENSG00000233799				35	0	0	14	2	12.5
AFAP1	0	genome.wustl.edu	37	4	7787971	7787971	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	4	7787971	7787971	G	A	SNP	AFAP1	ENST00000420658	human	ensembl	74_37	-1	known	missense	c.1480	p.P494S	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC	ENSG00000196526				223	0	0	95	34	26.3566
GAK	0	genome.wustl.edu	37	4	877125	877125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	4	877125	877125	C	T	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	missense	c.1382	p.R461Q	1.000	pfscan_Phosphatase_tensin-typ	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950				146	0	0	56	17	23.2877
SLCO6A1	0	genome.wustl.edu	37	5	101813546	101813546	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	101813546	101813546	C	A	SNP	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	missense	c.636	p.K212N	0.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359				190	0	0	86	23	21.1009
IRF1	0	genome.wustl.edu	37	5	131823676	131823676	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	131823676	131823676	C	T	SNP	IRF1	ENST00000245414	human	ensembl	74_37	-1	known	silent	c.129	p.K43	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF1	HGNC	ENSG00000125347				97	0	0	49	5	9.25926
BRD8	0	genome.wustl.edu	37	5	137503737	137503737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	137503737	137503737	C	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.673	p.G225C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				227	1	0.438596	52	38	42.2222
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				230	0	0	48	56	53.8462
PCDHB7	0	genome.wustl.edu	37	5	140553614	140553614	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	140553614	140553614	T	G	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.1198	p.F400V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				102	0	0	50	15	23.0769
FGF18	0	genome.wustl.edu	37	5	170863172	170863172	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	170863172	170863172	C	T	SNP	FGF18	ENST00000274625	human	ensembl	74_37	+1	known	missense	c.145	p.R49C	1.000	superfamily_Cytokine_IL1-like	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF18	HGNC	ENSG00000156427				65	0	0	19	8	29.6296
DBN1	0	genome.wustl.edu	37	5	176886156	176886156	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	176886156	176886156	C	T	SNP	DBN1	ENST00000292385	human	ensembl	74_37	-1	known	missense	c.1075	p.D359N	1.000	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	DBN1	HGNC	ENSG00000113758				219	0	0	66	10	13.1579
RASGEF1C	0	genome.wustl.edu	37	5	179529124	179529124	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	179529124	179529124	G	A	SNP	RASGEF1C	ENST00000361132	human	ensembl	74_37	-1	known	silent	c.1323	p.Y441	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090				71	0	0	43	5	10.4167
FLT4	0	genome.wustl.edu	37	5	180045909	180045909	+	Silent	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	180045909	180045909	G	T	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	silent	c.2862	p.P954	0.001	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				22	0	0	3	4	57.1429
HTR1A	0	genome.wustl.edu	37	5	63256626	63256626	+	Silent	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	63256626	63256626	C	A	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	silent	c.921	p.L307	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				46	0	0	37	9	19.5652
MAP1B	0	genome.wustl.edu	37	5	71492953	71492953	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	71492953	71492953	G	A	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	silent	c.3771	p.P1257	0.028	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				141	0	0	63	11	14.8649
TNPO1	0	genome.wustl.edu	37	5	72157667	72157667	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	72157667	72157667	G	C	SNP	TNPO1	ENST00000337273	human	ensembl	74_37	+1	known	missense	c.388	p.E130Q	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312				91	0	0	57	16	21.9178
MTRR	0	genome.wustl.edu	37	5	7897003	7897003	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	7897003	7897003	A	G	SNP	MTRR	ENST00000264668	human	ensembl	74_37	+1	known	missense	c.1784	p.D595G	0.001	pfam_OxRdtase_FAD/NAD-bd	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	MTRR	HGNC	ENSG00000124275				109	0	0	45	19	29.6875
GPR98	0	genome.wustl.edu	37	5	89938513	89938513	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	89938513	89938513	G	C	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.2301	p.L767F	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				235	0	0	91	38	29.4574
ARSK	0	genome.wustl.edu	37	5	94918625	94918625	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	5	94918625	94918625	G	A	SNP	ARSK	ENST00000380009	human	ensembl	74_37	+1	known	missense	c.422	p.R141H	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSK	HGNC	ENSG00000164291				253	0	0	105	33	23.913
HIVEP1	0	genome.wustl.edu	37	6	12120918	12120918	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	6	12120918	12120918	A	G	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.890	p.H297R	0.168	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				145	0	0	103	9	8.03571
HIST1H2BD	0	genome.wustl.edu	37	6	26158551	26158551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	6	26158551	26158551	G	A	SNP	HIST1H2BD	ENST00000289316	human	ensembl	74_37	+1	known	missense	c.154	p.D52N	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BD	HGNC	ENSG00000158373				442	1	0.225734	179	18	9.13706
ZNF184	0	genome.wustl.edu	37	6	27420700	27420700	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	6	27420700	27420700	G	T	SNP	ZNF184	ENST00000211936	human	ensembl	74_37	-1	known	nonsense	c.638	p.S213*	0.372	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF184	HGNC	ENSG00000096654				305	1	0.326797	133	51	27.7174
GPANK1	0	genome.wustl.edu	37	6	31631696	31631696	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	6	31631696	31631696	G	T	SNP	GPANK1	ENST00000375893	human	ensembl	74_37	-1	known	missense	c.560	p.A187D	0.987	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_G_patch_dom,superfamily_Ankyrin_rpt-contain_dom,smart_G_patch_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_G_patch_dom	-	no_errors	GPANK1	HGNC	ENSG00000204438				94	0	0	41	10	19.6078
PIM1	0	genome.wustl.edu	37	6	37139029	37139029	+	Silent	SNP	C	C	G			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	6	37139029	37139029	C	G	SNP	PIM1	ENST00000373509	human	ensembl	74_37	+1	known	silent	c.369	p.P123	0.976	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PIM1	HGNC	ENSG00000137193				345	0	0	135	17	11.1842
PKHD1	0	genome.wustl.edu	37	6	51910975	51910975	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	6	51910975	51910975	G	T	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.2419	p.Q807K	0.688	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				223	1	0.446429	103	39	27.4648
COL12A1	0	genome.wustl.edu	37	6	75865563	75865563	+	Silent	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	6	75865563	75865563	C	A	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	silent	c.3258	p.R1086	0.917	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				156	0	0	65	29	30.8511
CPA1	0	genome.wustl.edu	37	7	130022031	130022031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	7	130022031	130022031	G	A	SNP	CPA1	ENST00000011292	human	ensembl	74_37	+1	known	missense	c.464	p.R155H	0.961	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704				144	0	0	65	20	23.5294
DENND2A	0	genome.wustl.edu	37	7	140285465	140285465	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	7	140285465	140285465	C	A	SNP	DENND2A	ENST00000275884	human	ensembl	74_37	-1	known	missense	c.1169	p.G390V	0.990	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966				287	0	0	141	15	9.61538
MEOX2	0	genome.wustl.edu	37	7	15652168	15652168	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	7	15652168	15652168	C	T	SNP	MEOX2	ENST00000262041	human	ensembl	74_37	-1	known	silent	c.759	p.A253	0.004	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MEOX2	HGNC	ENSG00000106511				214	0	0	112	30	21.1268
NOD1	0	genome.wustl.edu	37	7	30492160	30492160	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	7	30492160	30492160	C	T	SNP	NOD1	ENST00000423334	human	ensembl	74_37	-1	known	missense	c.737	p.R246Q	0.988	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100				68	0	0	28	9	24.3243
GLI3	0	genome.wustl.edu	37	7	42005114	42005114	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	7	42005114	42005114	G	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.3557	p.P1186L	0.086	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				283	1	0.352113	140	25	15.1515
OCM	0	genome.wustl.edu	37	7	5923596	5923596	+	Silent	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	7	5923596	5923596	G	A	SNP	OCM	ENST00000242104	human	ensembl	74_37	+1	known	silent	c.270	p.A90	0.397	smart_EF_hand_dom,pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	OCM	HGNC	ENSG00000122543				59	0	0	41	7	14.5833
ABCB1	0	genome.wustl.edu	37	7	87179298	87179298	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	7	87179298	87179298	G	T	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	missense	c.1423	p.Q475K	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				188	0	0	147	40	21.3904
SAMD9L	0	genome.wustl.edu	37	7	92763591	92763591	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	7	92763591	92763591	C	A	SNP	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	missense	c.1694	p.W565L	0.999	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				70	0	0	73	28	27.7228
KCNK9	0	genome.wustl.edu	37	8	140631116	140631116	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	8	140631116	140631116	C	T	SNP	KCNK9	ENST00000303015	human	ensembl	74_37	-1	known	silent	c.510	p.T170	1.000	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK9,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427				75	0	0	46	10	17.8571
CSGALNACT1	0	genome.wustl.edu	37	8	19362779	19362779	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	8	19362779	19362779	C	A	SNP	CSGALNACT1	ENST00000311540	human	ensembl	74_37	-1	known	missense	c.567	p.E189D	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				120	0	0	68	19	21.8391
NEFM	0	genome.wustl.edu	37	8	24775106	24775106	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	8	24775106	24775106	G	A	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.1738	p.A580T	0.033	NULL	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				20	0	0	30	3	9.09091
KCTD9	0	genome.wustl.edu	37	8	25287389	25287389	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	8	25287389	25287389	G	C	SNP	KCTD9	ENST00000221200	human	ensembl	74_37	-1	known	nonsense	c.1154	p.S385*	1.000	NULL	pfam_5peptide_repeat,pfam_T1-type_BTB,pfam_K_channel_plant,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD9	HGNC	ENSG00000104756				186	0	0	110	61	35.6725
CSMD1	0	genome.wustl.edu	37	8	2823423	2823423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	8	2823423	2823423	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.9157	p.D3053N	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				45	0	0	13	4	23.5294
FAM110B	0	genome.wustl.edu	37	8	59058836	59058836	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	8	59058836	59058836	G	T	SNP	FAM110B	ENST00000361488	human	ensembl	74_37	+1	known	missense	c.47	p.S16I	1.000	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122				53	0	0	35	5	12.5
TRPA1	0	genome.wustl.edu	37	8	72975180	72975180	+	Splice_Site	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	8	72975180	72975180	C	A	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	splice_site	c.662-1	e6-1	1.000	-	-	-	no_errors	TRPA1	HGNC	ENSG00000104321				57	0	0	42	8	16
BAAT	0	genome.wustl.edu	37	9	104124952	104124952	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	9	104124952	104124952	G	T	SNP	BAAT	ENST00000259407	human	ensembl	74_37	-1	known	missense	c.1015	p.Q339K	0.004	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881				150	1	0.662252	77	17	18.0851
OR1J2	0	genome.wustl.edu	37	9	125273810	125273810	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	9	125273810	125273810	C	A	SNP	OR1J2	ENST00000335302	human	ensembl	74_37	+1	known	missense	c.730	p.H244N	0.992	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1J2	HGNC	ENSG00000197233				233	0	0	111	34	23.4483
LMX1B	0	genome.wustl.edu	37	9	129377676	129377676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	9	129377676	129377676	C	T	SNP	LMX1B	ENST00000355497	human	ensembl	74_37	+1	known	missense	c.154	p.H52Y	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1B	HGNC	ENSG00000136944				37	0	0	13	2	13.3333
BNC2	0	genome.wustl.edu	37	9	16436468	16436468	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	9	16436468	16436468	C	A	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.1724	p.S575I	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				140	0	0	63	22	25.8824
LINGO2	0	genome.wustl.edu	37	9	27950590	27950590	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	9	27950590	27950590	C	A	SNP	LINGO2	ENST00000308675	human	ensembl	74_37	-1	known	missense	c.80	p.G27V	1.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO2	HGNC	ENSG00000174482				101	0	0	34	22	39.2857
WNK2	0	genome.wustl.edu	37	9	96082763	96082763	+	RNA	SNP	G	G	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	9	96082763	96082763	G	A	SNP	WNK2	ENST00000471076	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.828	-	-	-	no_errors	WNK2	HGNC	ENSG00000165238				22	0	0	16	3	15.7895
KIAA1210	0	genome.wustl.edu	37	X	118220735	118220735	+	Silent	SNP	C	C	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	X	118220735	118220735	C	T	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	silent	c.4458	p.S1486	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423				29	0	0	27	5	15.625
OR8B4	0	genome.wustl.edu	37	11	124294266	124294268	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	124294266	124294268	AGA	-	DEL	OR8B4	ENST00000356130	human	ensembl	74_37	-1	known	in_frame_del	c.502_500	p.F167in_frame_del	1.000:0.993:0.973	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B4	HGNC	ENSG00000198657				53	0	0	32	10	23.8095
TNKS1BP1	0	genome.wustl.edu	37	11	57087864	57087864	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	11	57087864	57087864	T	-	DEL	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	frame_shift_del	c.417	p.G141fs	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				149	0	0	56	12	17.6471
SMAD4	0	genome.wustl.edu	37	18	48593405	48593406	+	Frame_Shift_Ins	INS	-	-	GT			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	18	48593405	48593406	-	GT	INS	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	frame_shift_ins	c.1156_1157	p.Q388fs	1.000:1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				191	0	0	76	13	14.6067
ZNF407	0	genome.wustl.edu	37	18	72343478	72343479	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	18	72343478	72343479	-	C	INS	ZNF407	ENST00000299687	human	ensembl	74_37	+1	known	frame_shift_ins	c.503_504	p.K171fs	0.000:0.009	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_U1,pfscan_Znf_C2H2	-	no_errors	ZNF407	HGNC	ENSG00000215421				173	0	0	96	7	6.79612
KIAA1211L	0	genome.wustl.edu	37	2	99439319	99439321	+	In_Frame_Del	DEL	CCG	CCG	-			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	CCG	CCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	2	99439319	99439321	CCG	-	DEL	KIAA1211L	ENST00000397899	human	ensembl	74_37	-1	known	in_frame_del	c.1417_1415	p.A472in_frame_del	0.562:0.594:0.640	NULL	NULL	-	no_errors	KIAA1211L	HGNC	ENSG00000196872				38	0	0	17	5	22.7273
ATXN7	0	genome.wustl.edu	37	3	63981543	63981551	+	In_Frame_Del	DEL	CCAAGGAGT	CCAAGGAGT	-			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	CCAAGGAGT	CCAAGGAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	3	63981543	63981551	CCAAGGAGT	-	DEL	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	in_frame_del	c.2045_2053	p.KES683in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.863:0.819	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				180	0	0	71	10	12.3457
SETX	0	genome.wustl.edu	37	9	135158548	135158548	+	RNA	DEL	A	A	-			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	9	135158548	135158548	A	-	DEL	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				12	0	0	18	3	14.2857
DOCK8	0	genome.wustl.edu	37	9	420472	420473	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	9	420472	420473	-	A	INS	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	frame_shift_ins	c.3912_3913	p.N1305fs	1.000:1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				151	0	0	75	21	21.875
MAP7D3	0	genome.wustl.edu	37	X	135313185	135313186	+	RNA	INS	-	-	T			TCGA-BR-8370-01A-11D-2340-08	TCGA-BR-8370-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c5a0b05a-1233-4b3d-9da8-a0ab6acca4bb	0d5b7d4e-a500-4ba9-8a39-ea210a62e28a	X	135313185	135313186	-	T	INS	MAP7D3	ENST00000477124	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004:0.018	-	-	-	no_errors	MAP7D3	HGNC	ENSG00000129680				20	0	0	32	2	5.88235
