Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
VANGL1	0	genome.wustl.edu	37	1	116226631	116226631	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	1	116226631	116226631	C	A	SNP	VANGL1	ENST00000310260	human	ensembl	74_37	+1	known	nonsense	c.1013	p.S338*	0.975	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL1	HGNC	ENSG00000173218				134	0	0	38	13	25.4902
ATAD3B	0	genome.wustl.edu	37	1	1423286	1423286	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	1	1423286	1423286	C	G	SNP	ATAD3B	ENST00000308647	human	ensembl	74_37	+1	known	missense	c.1258	p.R420G	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_DUF3523,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD3B	HGNC	ENSG00000160072				292	0	0	77	12	13.4831
CELA2B	0	genome.wustl.edu	37	1	15813901	15813901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	1	15813901	15813901	G	A	SNP	CELA2B	ENST00000375910	human	ensembl	74_37	+1	known	missense	c.761	p.R254Q	0.997	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CELA2B	HGNC	ENSG00000215704				317	0	0	101	6	5.60748
CROCCP2	0	genome.wustl.edu	37	1	16959834	16959834	+	RNA	SNP	G	G	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	1	16959834	16959834	G	T	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				23	0	0	1	3	75
LRRN2	0	genome.wustl.edu	37	1	204588700	204588700	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	1	204588700	204588700	C	G	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.421	p.A141P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				370	0	0	81	29	26.3636
PTPN14	0	genome.wustl.edu	37	1	214557344	214557344	+	Silent	SNP	A	A	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	1	214557344	214557344	A	G	SNP	PTPN14	ENST00000366956	human	ensembl	74_37	-1	known	silent	c.1854	p.H618	0.948	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104				111	0	0	44	4	8.33333
HMGN2	0	genome.wustl.edu	37	1	26801762	26801762	+	RNA	SNP	G	G	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	1	26801762	26801762	G	T	SNP	HMGN2	ENST00000460563	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGN2	HGNC	ENSG00000198830				14	0	0	10	4	28.5714
XKR8	0	genome.wustl.edu	37	1	28293529	28293529	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	1	28293529	28293529	G	T	SNP	XKR8	ENST00000373884	human	ensembl	74_37	+1	known	missense	c.1006	p.V336L	0.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR8	HGNC	ENSG00000158156				142	1	0.699301	44	6	12
DNALI1	0	genome.wustl.edu	37	1	38030780	38030780	+	RNA	SNP	C	C	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	1	38030780	38030780	C	A	SNP	DNALI1	ENST00000497858	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.768	-	-	-	no_errors	DNALI1	HGNC	ENSG00000163879				26	0	0	18	8	30.7692
SNX7	0	genome.wustl.edu	37	1	99164434	99164434	+	Silent	SNP	G	G	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	1	99164434	99164434	G	A	SNP	SNX7	ENST00000306121	human	ensembl	74_37	+1	known	silent	c.1011	p.E337	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX7	HGNC	ENSG00000162627				103	0	0	51	5	8.92857
USP2	0	genome.wustl.edu	37	11	119244095	119244095	+	Silent	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	11	119244095	119244095	C	T	SNP	USP2	ENST00000260187	human	ensembl	74_37	-1	known	silent	c.96	p.P32	0.534	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP2	HGNC	ENSG00000036672				108	0	0	33	4	10.8108
PHF21A	0	genome.wustl.edu	37	11	45986887	45986887	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	11	45986887	45986887	G	T	SNP	PHF21A	ENST00000257821	human	ensembl	74_37	-1	known	missense	c.975	p.S325R	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21A	HGNC	ENSG00000135365				46	0	0	16	6	27.2727
MS4A12	0	genome.wustl.edu	37	11	60274543	60274543	+	Silent	SNP	G	G	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	11	60274543	60274543	G	A	SNP	MS4A12	ENST00000016913	human	ensembl	74_37	+1	known	silent	c.750	p.A250	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A12	HGNC	ENSG00000071203				169	0	0	66	7	9.58904
PLA2G1B	0	genome.wustl.edu	37	12	120763699	120763699	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	12	120763699	120763699	C	A	SNP	PLA2G1B	ENST00000308366	human	ensembl	74_37	-1	known	missense	c.159	p.L53F	0.998	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	PLA2G1B	HGNC	ENSG00000170890				322	1	0.309598	95	27	22.1311
RIMBP2	0	genome.wustl.edu	37	12	130919389	130919389	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	12	130919389	130919389	C	T	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	missense	c.2092	p.A698T	0.000	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709				209	0	0	72	6	7.69231
KRT75	0	genome.wustl.edu	37	12	52822136	52822136	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	12	52822136	52822136	C	G	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1286	p.R429P	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				143	0	0	18	30	62.5
STAT6	0	genome.wustl.edu	37	12	57500552	57500552	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	12	57500552	57500552	C	A	SNP	STAT6	ENST00000300134	human	ensembl	74_37	-1	known	missense	c.402	p.L134F	0.004	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888				184	1	0.540541	62	12	16.2162
CDK4	0	genome.wustl.edu	37	12	58144455	58144455	+	Splice_Site	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	12	58144455	58144455	C	T	SNP	CDK4	ENST00000312990	human	ensembl	74_37	-1	known	splice_site	c.265-1	e3-1	1.000	-	-	-	no_errors	CDK4	HGNC	ENSG00000135446				244	0	0	70	4	5.40541
PTMS	0	genome.wustl.edu	37	12	6879593	6879593	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	12	6879593	6879593	T	G	SNP	PTMS	ENST00000309083	human	ensembl	74_37	+1	known	missense	c.294	p.N98K	0.992	pfam_Pro/parathymosin	pfam_Pro/parathymosin	-	no_errors	PTMS	HGNC	ENSG00000159335				229	0	0	60	5	7.69231
BEST3	0	genome.wustl.edu	37	12	70049306	70049306	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	12	70049306	70049306	T	G	SNP	BEST3	ENST00000330891	human	ensembl	74_37	-1	known	missense	c.1388	p.H463P	0.010	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325				176	0	0	75	5	6.25
NECAP1	0	genome.wustl.edu	37	12	8245589	8245589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	12	8245589	8245589	C	T	SNP	NECAP1	ENST00000339754	human	ensembl	74_37	+1	known	missense	c.614	p.A205V	1.000	NULL	pfam_NECAP-1	-	no_errors	NECAP1	HGNC	ENSG00000089818				457	0	0	171	18	9.52381
ELK3	0	genome.wustl.edu	37	12	96641300	96641300	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	12	96641300	96641300	G	C	SNP	ELK3	ENST00000228741	human	ensembl	74_37	+1	known	missense	c.790	p.A264P	0.998	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK3	HGNC	ENSG00000111145				223	0	0	97	15	13.3929
ATP8A2	0	genome.wustl.edu	37	13	26343262	26343262	+	Silent	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	13	26343262	26343262	C	T	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	silent	c.2463	p.D821	0.761	superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				176	0	0	72	5	6.49351
MYLK3	0	genome.wustl.edu	37	16	46744687	46744687	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	16	46744687	46744687	G	A	SNP	MYLK3	ENST00000394809	human	ensembl	74_37	-1	known	missense	c.2129	p.S710F	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK3	HGNC	ENSG00000140795				366	1	0.27248	118	17	12.5926
FTO	0	genome.wustl.edu	37	16	53860211	53860211	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	16	53860211	53860211	G	C	SNP	FTO	ENST00000471389	human	ensembl	74_37	+1	known	missense	c.559	p.G187R	0.000	NULL	NULL	-	no_errors	FTO	HGNC	ENSG00000140718				149	0	0	96	6	5.88235
CDH3	0	genome.wustl.edu	37	16	68718494	68718494	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	16	68718494	68718494	T	A	SNP	CDH3	ENST00000264012	human	ensembl	74_37	+1	known	missense	c.1191	p.D397E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038				711	0	0	310	21	6.34441
ABCA7	0	genome.wustl.edu	37	19	1042792	1042792	+	Silent	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	19	1042792	1042792	C	T	SNP	ABCA7	ENST00000263094	human	ensembl	74_37	+1	known	silent	c.546	p.S182	0.011	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687				175	0	0	79	6	7.05882
NWD1	0	genome.wustl.edu	37	19	16860087	16860087	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	19	16860087	16860087	G	C	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.634	p.A212P	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				208	1	0.478469	40	27	40.2985
GDF15	0	genome.wustl.edu	37	19	18499106	18499106	+	Silent	SNP	A	A	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	19	18499106	18499106	A	G	SNP	GDF15	ENST00000252809	human	ensembl	74_37	+1	known	silent	c.288	p.G96	0.000	NULL	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF15	HGNC	ENSG00000130513				90	0	0	30	8	21.0526
NPHS1	0	genome.wustl.edu	37	19	36336437	36336437	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	19	36336437	36336437	T	C	SNP	NPHS1	ENST00000378910	human	ensembl	74_37	-1	known	missense	c.1763	p.E588G	0.908	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NPHS1	HGNC	ENSG00000161270				56	0	0	11	5	31.25
CRX	0	genome.wustl.edu	37	19	48342758	48342758	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	19	48342758	48342758	C	A	SNP	CRX	ENST00000221996	human	ensembl	74_37	+1	known	missense	c.434	p.P145H	0.011	NULL	pfam_Homeobox_dom,pfam_Otx_TF_C,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	CRX	HGNC	ENSG00000105392				230	0	0	83	6	6.74157
TMC4	0	genome.wustl.edu	37	19	54676754	54676754	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	19	54676754	54676754	G	C	SNP	TMC4	ENST00000301187	human	ensembl	74_37	-1	known	missense	c.59	p.A20G	0.989	NULL	pfam_TMC	-	no_errors	TMC4	HGNC	ENSG00000167608				471	1	0.211864	169	15	8.15217
ZEB2	0	genome.wustl.edu	37	2	145274869	145274869	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	2	145274869	145274869	G	T	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	missense	c.49	p.Q17K	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				179	1	0.555556	65	6	8.4507
SCAF4	0	genome.wustl.edu	37	21	33065669	33065669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	21	33065669	33065669	C	T	SNP	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	missense	c.1451	p.R484Q	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF4	HGNC	ENSG00000156304				113	0	0	58	4	6.45161
U2AF1	0	genome.wustl.edu	37	21	44524474	44524474	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	21	44524474	44524474	C	T	SNP	U2AF1	ENST00000291552	human	ensembl	74_37	-1	known	missense	c.83	p.R28H	1.000	pfam_Znf_CCCH,smart_Znf_CCCH,prints_U2_small	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_U2_small	-	no_errors	U2AF1	HGNC	ENSG00000160201				96	0	0	36	4	10
CECR2	0	genome.wustl.edu	37	22	17982144	17982144	+	Silent	SNP	C	C	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	22	17982144	17982144	C	G	SNP	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	silent	c.615	p.S205	0.928	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954				34	0	0	5	6	54.5455
APOBEC3H	0	genome.wustl.edu	37	22	39498015	39498015	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	22	39498015	39498015	C	G	SNP	APOBEC3H	ENST00000442487	human	ensembl	74_37	+1	known	missense	c.511	p.R171G	0.000	pfam_APOBEC_C	pfam_APOBEC_N,pfam_APOBEC_C,pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3H	HGNC	ENSG00000100298				130	1	0.763359	37	15	28.8462
CNTN6	0	genome.wustl.edu	37	3	1427322	1427322	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	3	1427322	1427322	G	A	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.2545	p.E849K	0.909	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				197	0	0	91	9	9
PAK2	0	genome.wustl.edu	37	3	196534697	196534697	+	Silent	SNP	T	T	C			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	3	196534697	196534697	T	C	SNP	PAK2	ENST00000327134	human	ensembl	74_37	+1	known	silent	c.621	p.G207	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK2	HGNC	ENSG00000180370				143	0	0	80	6	6.97674
SNRK	0	genome.wustl.edu	37	3	43389767	43389767	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	3	43389767	43389767	G	T	SNP	SNRK	ENST00000296088	human	ensembl	74_37	+1	known	missense	c.2016	p.L672F	0.198	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SNRK	HGNC	ENSG00000163788				184	0	0	49	10	16.9492
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				302	0	0	48	34	41.4634
RBM6	0	genome.wustl.edu	37	3	50103862	50103862	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	3	50103862	50103862	G	T	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	missense	c.2870	p.C957F	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				405	1	0.246305	123	10	7.5188
BAP1	0	genome.wustl.edu	37	3	52440318	52440318	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	3	52440318	52440318	A	G	SNP	BAP1	ENST00000460680	human	ensembl	74_37	-1	known	missense	c.734	p.L245P	1.000	NULL	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930				116	0	0	42	7	14.2857
SNX18	0	genome.wustl.edu	37	5	53815333	53815333	+	Silent	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	5	53815333	53815333	C	T	SNP	SNX18	ENST00000326277	human	ensembl	74_37	+1	known	silent	c.1551	p.P517	0.004	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX18	HGNC	ENSG00000178996				217	1	0.458716	87	9	9.375
CAP2	0	genome.wustl.edu	37	6	17421835	17421835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	6	17421835	17421835	C	T	SNP	CAP2	ENST00000229922	human	ensembl	74_37	+1	known	missense	c.49	p.R17C	0.995	pfam_Adenylate_cyclase-assoc_CAP_N	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP2	HGNC	ENSG00000112186				227	0	0	85	10	10.5263
VWA7	0	genome.wustl.edu	37	6	31733787	31733787	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	6	31733787	31733787	T	C	SNP	VWA7	ENST00000375686	human	ensembl	74_37	-1	known	missense	c.2372	p.E791G	1.000	NULL	NULL	-	no_errors	VWA7	HGNC	ENSG00000204396				455	1	0.219298	144	22	13.253
KHDRBS2	0	genome.wustl.edu	37	6	62407141	62407141	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	6	62407141	62407141	T	C	SNP	KHDRBS2	ENST00000281156	human	ensembl	74_37	-1	known	missense	c.911	p.D304G	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232				112	0	0	52	5	8.77193
BAI3	0	genome.wustl.edu	37	6	70071099	70071099	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	6	70071099	70071099	C	G	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.3934	p.P1312A	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				100	0	0	55	4	6.77966
RIMS2	0	genome.wustl.edu	37	8	104898306	104898306	+	Silent	SNP	T	T	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	8	104898306	104898306	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.1479	p.P493	0.995	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				117	0	0	77	5	6.09756
ADCY8	0	genome.wustl.edu	37	8	131916177	131916177	+	Silent	SNP	A	A	C			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	8	131916177	131916177	A	C	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	silent	c.1752	p.T584	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				229	0	0	126	8	5.97015
SLCO5A1	0	genome.wustl.edu	37	8	70744581	70744581	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	8	70744581	70744581	C	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	74_37	-1	known	missense	c.328	p.A110T	0.324	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571				146	0	0	64	5	7.24638
BAAT	0	genome.wustl.edu	37	9	104124952	104124952	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	9	104124952	104124952	G	T	SNP	BAAT	ENST00000259407	human	ensembl	74_37	-1	known	missense	c.1015	p.Q339K	0.004	pfam_BAAT_C,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	BAAT	HGNC	ENSG00000136881				181	0	0	76	8	9.52381
TNC	0	genome.wustl.edu	37	9	117840372	117840372	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	9	117840372	117840372	C	T	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.2524	p.V842M	0.894	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				111	0	0	42	5	10.6383
RECK	0	genome.wustl.edu	37	9	36083483	36083483	+	Silent	SNP	C	C	T			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	9	36083483	36083483	C	T	SNP	RECK	ENST00000377966	human	ensembl	74_37	+1	known	silent	c.561	p.C187	0.996	NULL	pfam_Kazal_dom,superfamily_Prot_inh_PMP,smart_Kazal_dom	-	no_errors	RECK	HGNC	ENSG00000122707				69	0	0	45	3	6.25
MMGT1	0	genome.wustl.edu	37	X	135049608	135049608	+	Silent	SNP	A	A	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	X	135049608	135049608	A	G	SNP	MMGT1	ENST00000433339	human	ensembl	74_37	-1	known	silent	c.372	p.G124	0.930	pfam_Magnesium_transport	pfam_Magnesium_transport	-	no_errors	MMGT1	HGNC	ENSG00000169446				170	0	0	67	8	10.6667
MAGEB3	0	genome.wustl.edu	37	X	30254145	30254145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	X	30254145	30254145	A	G	SNP	MAGEB3	ENST00000361644	human	ensembl	74_37	+1	known	missense	c.104	p.K35R	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB3	HGNC	ENSG00000198798				48	0	0	23	3	11.5385
VPS45	0	genome.wustl.edu	37	1	150082514	150082514	+	RNA	DEL	A	A	-			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	1	150082514	150082514	A	-	DEL	VPS45	ENST00000484306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.965	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631				18	0	0	9	3	25
CEP164P1	0	genome.wustl.edu	37	10	45498706	45498706	+	RNA	DEL	T	T	-			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	10	45498706	45498706	T	-	DEL	CEP164P1	ENST00000456938	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CEP164P1	HGNC	ENSG00000226937				19	0	0	10	2	16.6667
DIAPH1	0	genome.wustl.edu	37	5	140953564	140953566	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-8371-01A-11D-2340-08	TCGA-BR-8371-10A-01D-2341-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8509693c-ad35-4c24-80de-f84ae07fe87e	be24ceb1-6f72-48d3-8dc9-7649fd72609f	5	140953564	140953566	GGA	-	DEL	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	in_frame_del	c.1853_1851	p.P620in_frame_del	0.010:0.008:0.007	pfam_Formin_homology_1	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				14	0	0	4	2	33.3333
