Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
HIAT1	0	genome.wustl.edu	37	1	100546165	100546165	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	100546165	100546165	A	G	SNP	HIAT1	ENST00000370152	human	ensembl	74_37	+1	known	missense	c.1216	p.T406A	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIAT1	HGNC	ENSG00000156875				271	0	0	106	59	35.7576
UBE4B	0	genome.wustl.edu	37	1	10166465	10166465	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	10166465	10166465	G	A	SNP	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	silent	c.1020	p.A340	0.002	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				209	0	0	75	34	31.1927
COL11A1	0	genome.wustl.edu	37	1	103345424	103345424	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	103345424	103345424	T	C	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.5125	p.T1709A	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				116	0	0	47	40	45.977
CASZ1	0	genome.wustl.edu	37	1	10713683	10713683	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	10713683	10713683	T	C	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	missense	c.2431	p.T811A	0.149	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				59	0	0	25	12	32.4324
VAV3	0	genome.wustl.edu	37	1	108116789	108116789	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	108116789	108116789	G	A	SNP	VAV3	ENST00000370056	human	ensembl	74_37	-1	known	silent	c.2382	p.I794	0.953	pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215				180	0	0	102	57	35.8491
GPSM2	0	genome.wustl.edu	37	1	109440708	109440708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	109440708	109440708	C	T	SNP	GPSM2	ENST00000264126	human	ensembl	74_37	+1	known	missense	c.542	p.A181V	1.000	smart_TPR_repeat	pfam_GoLoco_motif,pfam_TPR_1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957				150	0	0	75	31	29.2453
CELSR2	0	genome.wustl.edu	37	1	109793562	109793562	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	109793562	109793562	T	C	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	silent	c.861	p.P287	0.197	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				137	0	0	60	29	32.5843
GSTM5	0	genome.wustl.edu	37	1	110257571	110257571	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	110257571	110257571	G	T	SNP	GSTM5	ENST00000369812	human	ensembl	74_37	+1	known	missense	c.420	p.E140D	1.000	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_mu	-	no_errors	GSTM5	HGNC	ENSG00000134201				199	0	0	70	30	30
KCNA3	0	genome.wustl.edu	37	1	111217183	111217183	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	111217183	111217183	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	silent	c.249	p.C83	0.392	prints_K_chnl_volt-dep_Kv1.3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				29	0	0	5	6	54.5455
TTLL10	0	genome.wustl.edu	37	1	1120411	1120411	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	1120411	1120411	A	G	SNP	TTLL10	ENST00000379289	human	ensembl	74_37	+1	known	silent	c.1323	p.E441	0.595	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL10	HGNC	ENSG00000162571				71	0	0	22	9	29.0323
AP4B1	0	genome.wustl.edu	37	1	114442703	114442703	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	114442703	114442703	T	C	SNP	AP4B1	ENST00000256658	human	ensembl	74_37	-1	known	missense	c.937	p.S313G	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP4B1	HGNC	ENSG00000134262				263	0	0	208	14	6.30631
PTCHD2	0	genome.wustl.edu	37	1	11561798	11561798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	11561798	11561798	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.749	p.R250H	0.834	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				27	0	0	9	4	30.7692
TTF2	0	genome.wustl.edu	37	1	117618443	117618443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	117618443	117618443	C	T	SNP	TTF2	ENST00000369466	human	ensembl	74_37	+1	known	missense	c.1237	p.R413W	0.995	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830				87	0	0	40	17	29.8246
SPAG17	0	genome.wustl.edu	37	1	118509330	118509330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	118509330	118509330	G	A	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.6434	p.T2145I	1.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				138	0	0	75	11	12.7907
PLOD1	0	genome.wustl.edu	37	1	12024291	12024291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	12024291	12024291	C	T	SNP	PLOD1	ENST00000376369	human	ensembl	74_37	+1	known	missense	c.1403	p.A468V	0.998	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD1	HGNC	ENSG00000083444				453	0	0	120	69	36.5079
MIIP	0	genome.wustl.edu	37	1	12090027	12090027	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	12090027	12090027	C	T	SNP	MIIP	ENST00000466860	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIIP	HGNC	ENSG00000116691				43	0	0	16	11	40.7407
PUSL1	0	genome.wustl.edu	37	1	1244909	1244909	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	1244909	1244909	C	T	SNP	PUSL1	ENST00000379031	human	ensembl	74_37	+1	known	silent	c.399	p.R133	0.629	superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruA	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruA	-	no_errors	PUSL1	HGNC	ENSG00000169972				35	0	0	13	4	23.5294
CHD1L	0	genome.wustl.edu	37	1	146767247	146767247	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	146767247	146767247	T	C	SNP	CHD1L	ENST00000467213	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CHD1L	HGNC	ENSG00000131778				12	0	0	14	12	46.1538
HIST2H2BB	0	genome.wustl.edu	37	1	149399184	149399184	+	RNA	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	149399184	149399184	G	T	SNP	HIST2H2BB	ENST00000609585	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	HIST2H2BB	HGNC	ENSG00000240929				89	0	0	53	21	28.3784
CA14	0	genome.wustl.edu	37	1	150233969	150233969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	150233969	150233969	C	T	SNP	CA14	ENST00000369111	human	ensembl	74_37	+1	known	missense	c.188	p.A63V	0.003	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA14	HGNC	ENSG00000118298				93	0	0	29	17	36.9565
NPR1	0	genome.wustl.edu	37	1	153658344	153658344	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	153658344	153658344	A	G	SNP	NPR1	ENST00000368680	human	ensembl	74_37	+1	known	silent	c.1668	p.T556	0.769	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418				78	0	0	39	19	32.7586
NPR1	0	genome.wustl.edu	37	1	153660166	153660166	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	153660166	153660166	T	C	SNP	NPR1	ENST00000368680	human	ensembl	74_37	+1	known	missense	c.2149	p.S717P	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418				261	0	0	104	53	33.758
KCNN3	0	genome.wustl.edu	37	1	154841703	154841703	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	154841703	154841703	G	A	SNP	KCNN3	ENST00000271915	human	ensembl	74_37	-1	novel	silent	c.738	p.A246	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603				130	0	0	59	35	37.234
ENSG00000231064	0	genome.wustl.edu	37	1	155170205	155170205	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	155170205	155170205	A	G	SNP	ENSG00000231064	ENST00000436772	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-263K19.4	Clone_based_vega_gene	ENSG00000231064				147	0	0	74	20	21.2766
ASH1L	0	genome.wustl.edu	37	1	155308103	155308103	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	155308103	155308103	T	C	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	silent	c.8595	p.E2865	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				199	0	0	101	7	6.48148
TMEM51	0	genome.wustl.edu	37	1	15541718	15541718	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	15541718	15541718	T	C	SNP	TMEM51	ENST00000376008	human	ensembl	74_37	+1	known	silent	c.135	p.A45	0.023	NULL	NULL	-	no_errors	TMEM51	HGNC	ENSG00000171729				355	0	0	99	51	34
C1orf85	0	genome.wustl.edu	37	1	156263285	156263285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	156263285	156263285	C	T	SNP	C1orf85	ENST00000362007	human	ensembl	74_37	-1	known	missense	c.881	p.R294Q	0.882	NULL	NULL	-	no_errors	C1orf85	HGNC	ENSG00000198715				69	0	0	20	17	45.9459
LRRC71	0	genome.wustl.edu	37	1	156899200	156899200	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	156899200	156899200	C	T	SNP	LRRC71	ENST00000337428	human	ensembl	74_37	+1	known	silent	c.1125	p.G375	0.997	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC71	HGNC	ENSG00000160838				71	0	0	12	10	45.4545
ARHGEF11	0	genome.wustl.edu	37	1	156915929	156915929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	156915929	156915929	C	T	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	missense	c.2720	p.R907Q	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				50	0	0	25	7	21.875
CD1A	0	genome.wustl.edu	37	1	158225951	158225951	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	158225951	158225951	C	A	SNP	CD1A	ENST00000289429	human	ensembl	74_37	+1	known	missense	c.483	p.F161L	0.001	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1A	HGNC	ENSG00000158477				147	0	0	83	45	35.1562
OR10K1	0	genome.wustl.edu	37	1	158435710	158435710	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	158435710	158435710	A	T	SNP	OR10K1	ENST00000289451	human	ensembl	74_37	+1	known	missense	c.359	p.Y120F	0.994	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285				248	0	0	128	69	35.0254
SPTA1	0	genome.wustl.edu	37	1	158644339	158644339	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	158644339	158644339	C	T	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	silent	c.1239	p.Q413	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				255	0	0	122	58	32.2222
PYHIN1	0	genome.wustl.edu	37	1	158908285	158908285	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	158908285	158908285	A	C	SNP	PYHIN1	ENST00000368140	human	ensembl	74_37	+1	known	missense	c.364	p.S122R	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	PYHIN1	HGNC	ENSG00000163564				122	0	0	30	24	44.4444
IFI16	0	genome.wustl.edu	37	1	159019338	159019338	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	159019338	159019338	C	A	SNP	IFI16	ENST00000295809	human	ensembl	74_37	+1	known	silent	c.1614	p.P538	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565				137	0	0	66	25	27.4725
NCSTN	0	genome.wustl.edu	37	1	160325747	160325747	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	160325747	160325747	C	T	SNP	NCSTN	ENST00000294785	human	ensembl	74_37	+1	known	missense	c.1550	p.T517M	1.000	NULL	pfam_Nicastrin	-	no_errors	NCSTN	HGNC	ENSG00000162736				72	0	0	24	6	20
USP21	0	genome.wustl.edu	37	1	161133984	161133984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	161133984	161133984	C	T	SNP	USP21	ENST00000289865	human	ensembl	74_37	+1	known	missense	c.1249	p.R417W	0.859	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP21	HGNC	ENSG00000143258				101	0	0	46	20	30.303
FCRLB	0	genome.wustl.edu	37	1	161697204	161697204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	161697204	161697204	G	A	SNP	FCRLB	ENST00000367948	human	ensembl	74_37	+1	known	missense	c.1033	p.G345S	0.000	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCRLB	HGNC	ENSG00000162746				78	0	0	27	10	27.027
SPEN	0	genome.wustl.edu	37	1	16247461	16247461	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	16247461	16247461	G	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.1732	p.G578S	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				53	0	0	21	9	30
POGK	0	genome.wustl.edu	37	1	166818871	166818871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	166818871	166818871	C	T	SNP	POGK	ENST00000367875	human	ensembl	74_37	+1	known	missense	c.1055	p.A352V	0.001	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_Brinker_DNA-bd,pfam_HTH_CenpB_DNA-bd_dom,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Homeodomain-like,smart_Krueppel-associated_box,smart_HTH_CenpB_DNA-bd_dom,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	POGK	HGNC	ENSG00000143157				136	1	0.729927	41	30	42.2535
NBPF1	0	genome.wustl.edu	37	1	16918375	16918375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	16918375	16918375	C	T	SNP	NBPF1	ENST00000392963	human	ensembl	74_37	-1	known	missense	c.142	p.A48T	0.004	NULL	NULL	-	no_errors	NBPF1	HGNC	ENSG00000219481				1280	0	0	822	47	5.40852
SELP	0	genome.wustl.edu	37	1	169586331	169586331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	169586331	169586331	G	A	SNP	SELP	ENST00000263686	human	ensembl	74_37	-1	known	missense	c.416	p.P139L	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175				201	0	0	110	55	33.3333
PRRX1	0	genome.wustl.edu	37	1	170705408	170705408	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	170705408	170705408	C	T	SNP	PRRX1	ENST00000476867	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRRX1	HGNC	ENSG00000116132				31	0	0	14	13	48.1481
FMO4	0	genome.wustl.edu	37	1	171293332	171293332	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	171293332	171293332	A	G	SNP	FMO4	ENST00000367749	human	ensembl	74_37	+1	known	missense	c.377	p.D126G	0.984	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	-	no_errors	FMO4	HGNC	ENSG00000076258				661	1	0.151057	269	115	29.9479
SUCO	0	genome.wustl.edu	37	1	172522402	172522402	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	172522402	172522402	T	C	SNP	SUCO	ENST00000263688	human	ensembl	74_37	+1	known	silent	c.180	p.D60	1.000	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUCO	HGNC	ENSG00000094975				225	0	0	104	46	30.6667
ATP13A2	0	genome.wustl.edu	37	1	17313302	17313302	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	17313302	17313302	T	C	SNP	ATP13A2	ENST00000326735	human	ensembl	74_37	-1	known	missense	c.3233	p.N1078S	1.000	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A2	HGNC	ENSG00000159363				36	0	0	21	4	16
PADI2	0	genome.wustl.edu	37	1	17431417	17431417	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	17431417	17431417	G	A	SNP	PADI2	ENST00000375486	human	ensembl	74_37	-1	known	missense	c.232	p.R78W	1.000	pfam_PAD_N,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115				86	0	0	37	11	22.9167
ASTN1	0	genome.wustl.edu	37	1	177133690	177133690	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	177133690	177133690	C	T	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	silent	c.123	p.T41	0.998	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				63	0	0	18	12	40
ARHGEF10L	0	genome.wustl.edu	37	1	17914943	17914943	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	17914943	17914943	C	A	SNP	ARHGEF10L	ENST00000361221	human	ensembl	74_37	+1	known	missense	c.226	p.P76T	0.981	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964				129	0	0	42	16	27.5862
AXDND1	0	genome.wustl.edu	37	1	179363045	179363045	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	179363045	179363045	T	C	SNP	AXDND1	ENST00000367618	human	ensembl	74_37	+1	known	missense	c.871	p.Y291H	1.000	pfam_Axonemal_dynein_light_chain	pfam_Axonemal_dynein_light_chain	-	no_errors	AXDND1	HGNC	ENSG00000162779				191	0	0	95	43	31.1594
TOR1AIP1	0	genome.wustl.edu	37	1	179887081	179887081	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	179887081	179887081	G	T	SNP	TOR1AIP1	ENST00000528443	human	ensembl	74_37	+1	known	missense	c.1462	p.G488C	0.988	pfam_Lamina-ass_polypeptide_CLAP1C	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP1	HGNC	ENSG00000143337				139	0	0	63	38	37.6238
ARHGEF10L	0	genome.wustl.edu	37	1	17990974	17990974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	17990974	17990974	G	A	SNP	ARHGEF10L	ENST00000361221	human	ensembl	74_37	+1	known	missense	c.2893	p.V965M	0.001	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964				37	0	0	7	11	61.1111
XPR1	0	genome.wustl.edu	37	1	180794334	180794334	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	180794334	180794334	A	C	SNP	XPR1	ENST00000367590	human	ensembl	74_37	+1	known	missense	c.988	p.S330R	1.000	pfam_EXS_C	pfam_EXS_C,pfam_SPX_N	-	no_errors	XPR1	HGNC	ENSG00000143324				298	0	0	142	59	29.3532
DHX9	0	genome.wustl.edu	37	1	182848383	182848383	+	Splice_Site	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	182848383	182848383	A	C	SNP	DHX9	ENST00000367549	human	ensembl	74_37	+1	known	splice_site	c.2352-2	e20-2	1.000	-	-	-	no_errors	DHX9	HGNC	ENSG00000135829				225	0	0	106	64	37.6471
SWT1	0	genome.wustl.edu	37	1	185171822	185171822	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	185171822	185171822	T	C	SNP	SWT1	ENST00000367500	human	ensembl	74_37	+1	known	silent	c.1560	p.S520	1.000	NULL	smart_PIN_dom	-	no_errors	SWT1	HGNC	ENSG00000116668				101	0	0	56	22	28.2051
PRG4	0	genome.wustl.edu	37	1	186278205	186278205	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	186278205	186278205	T	C	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	silent	c.3354	p.V1118	0.001	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				71	0	0	51	16	23.8806
KLHDC7A	0	genome.wustl.edu	37	1	18809662	18809662	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	18809662	18809662	A	G	SNP	KLHDC7A	ENST00000400664	human	ensembl	74_37	+1	known	silent	c.2187	p.G729	0.978	NULL	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7A	HGNC	ENSG00000179023				136	0	0	58	15	20.5479
TAS1R2	0	genome.wustl.edu	37	1	19166729	19166729	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	19166729	19166729	G	T	SNP	TAS1R2	ENST00000375371	human	ensembl	74_37	-1	novel	silent	c.1884	p.S628	0.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002				185	0	0	82	42	33.871
ALDH4A1	0	genome.wustl.edu	37	1	19202927	19202927	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	19202927	19202927	G	A	SNP	ALDH4A1	ENST00000290597	human	ensembl	74_37	-1	known	missense	c.1220	p.A407V	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_1-pyrroline-5-COlate_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_1-pyrroline-5-COlate_DH	-	no_errors	ALDH4A1	HGNC	ENSG00000159423				23	0	0	17	4	19.0476
UBR4	0	genome.wustl.edu	37	1	19480401	19480401	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	19480401	19480401	A	C	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.6491	p.L2164R	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				205	0	0	71	38	34.8624
EMC1	0	genome.wustl.edu	37	1	19564605	19564605	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	19564605	19564605	T	C	SNP	EMC1	ENST00000477853	human	ensembl	74_37	-1	known	missense	c.1118	p.Y373C	1.000	NULL	pfam_DUF1620,superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	EMC1	HGNC	ENSG00000127463				74	0	0	18	14	43.75
KCNT2	0	genome.wustl.edu	37	1	196342340	196342340	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	196342340	196342340	A	G	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	silent	c.1333	p.L445	1.000	pfam_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				137	0	0	68	13	16.0494
AKR7A2	0	genome.wustl.edu	37	1	19634729	19634729	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	19634729	19634729	T	C	SNP	AKR7A2	ENST00000235835	human	ensembl	74_37	-1	known	missense	c.514	p.N172D	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7A2	HGNC	ENSG00000053371				94	0	0	35	11	23.913
CFHR5	0	genome.wustl.edu	37	1	196964968	196964968	+	Silent	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	196964968	196964968	A	T	SNP	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	silent	c.801	p.I267	0.009	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389				95	0	0	35	17	32.6923
F13B	0	genome.wustl.edu	37	1	197032158	197032158	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	197032158	197032158	T	A	SNP	F13B	ENST00000367412	human	ensembl	74_37	-1	known	missense	c.94	p.N32Y	1.000	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278				273	0	0	133	63	32.1429
ASPM	0	genome.wustl.edu	37	1	197059338	197059338	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	197059338	197059338	A	G	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	silent	c.9817	p.L3273	0.003	superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				128	0	0	76	38	33.3333
LGR6	0	genome.wustl.edu	37	1	202288142	202288142	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	202288142	202288142	G	A	SNP	LGR6	ENST00000367278	human	ensembl	74_37	+1	known	missense	c.2711	p.C904Y	0.690	NULL	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067				136	0	0	55	24	30.3797
DSTYK	0	genome.wustl.edu	37	1	205131199	205131199	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	205131199	205131199	T	C	SNP	DSTYK	ENST00000367162	human	ensembl	74_37	-1	known	missense	c.1783	p.S595G	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DSTYK	HGNC	ENSG00000133059				70	0	0	41	5	10.8696
MFSD4	0	genome.wustl.edu	37	1	205554060	205554060	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	205554060	205554060	T	A	SNP	MFSD4	ENST00000367147	human	ensembl	74_37	+1	known	missense	c.916	p.S306T	0.577	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD4	HGNC	ENSG00000174514				324	1	0.307692	134	39	22.5434
IKBKE	0	genome.wustl.edu	37	1	206669460	206669460	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	206669460	206669460	A	G	SNP	IKBKE	ENST00000367120	human	ensembl	74_37	+1	known	silent	c.2133	p.P711	0.004	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466				117	0	0	34	18	34.6154
DYRK3	0	genome.wustl.edu	37	1	206821426	206821426	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	206821426	206821426	C	A	SNP	DYRK3	ENST00000367109	human	ensembl	74_37	+1	known	missense	c.883	p.L295I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479				199	0	0	152	14	8.43373
EIF4G3	0	genome.wustl.edu	37	1	21191710	21191710	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	21191710	21191710	G	A	SNP	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	missense	c.2518	p.R840W	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151				110	0	0	62	29	31.8681
FAM71A	0	genome.wustl.edu	37	1	212799665	212799665	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	212799665	212799665	G	T	SNP	FAM71A	ENST00000294829	human	ensembl	74_37	+1	known	silent	c.1446	p.G482	0.184	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771				154	1	0.645161	55	24	30.3797
NSL1	0	genome.wustl.edu	37	1	212960901	212960901	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	212960901	212960901	C	A	SNP	NSL1	ENST00000366977	human	ensembl	74_37	-1	known	missense	c.313	p.D105Y	0.987	pfam_Kinetochore_Mis14	pfam_Kinetochore_Mis14	-	no_errors	NSL1	HGNC	ENSG00000117697				110	0	0	32	19	37.2549
KCNK2	0	genome.wustl.edu	37	1	215259855	215259855	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	215259855	215259855	C	T	SNP	KCNK2	ENST00000444842	human	ensembl	74_37	+1	known	missense	c.191	p.T64M	1.000	prints_2pore_dom_K_chnl_TREK	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC	ENSG00000082482				82	0	0	49	22	30.9859
USH2A	0	genome.wustl.edu	37	1	215987141	215987141	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	215987141	215987141	G	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	nonsense	c.9676	p.R3226*	0.435	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				127	0	0	86	6	6.52174
LDLRAD2	0	genome.wustl.edu	37	1	22141090	22141090	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	22141090	22141090	G	A	SNP	LDLRAD2	ENST00000344642	human	ensembl	74_37	+1	known	silent	c.285	p.A95	0.002	superfamily_CUB_dom	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,superfamily_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD2	HGNC	ENSG00000187942				73	0	0	20	10	33.3333
HSPG2	0	genome.wustl.edu	37	1	22183650	22183650	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	22183650	22183650	G	A	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	silent	c.5433	p.N1811	0.996	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				269	0	0	85	34	28.5714
TAF1A	0	genome.wustl.edu	37	1	222736617	222736617	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	222736617	222736617	A	G	SNP	TAF1A	ENST00000350027	human	ensembl	74_37	-1	known	missense	c.983	p.L328P	0.661	pirsf_RNA_pol_I_TAF1A/TAFI48	pirsf_RNA_pol_I_TAF1A/TAFI48	-	no_errors	TAF1A	HGNC	ENSG00000143498				68	0	0	37	10	21.2766
MIA3	0	genome.wustl.edu	37	1	222827777	222827777	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	222827777	222827777	A	G	SNP	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	missense	c.4424	p.Q1475R	0.386	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305				89	0	0	36	30	45.4545
SKI	0	genome.wustl.edu	37	1	2237624	2237624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	2237624	2237624	C	T	SNP	SKI	ENST00000378536	human	ensembl	74_37	+1	known	missense	c.1933	p.R645W	0.998	NULL	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKI	HGNC	ENSG00000157933				15	0	0	7	5	41.6667
CAPN2	0	genome.wustl.edu	37	1	223947066	223947066	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	223947066	223947066	T	C	SNP	CAPN2	ENST00000295006	human	ensembl	74_37	+1	known	missense	c.1412	p.V471A	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN2	HGNC	ENSG00000162909				109	0	0	48	16	25
ENAH	0	genome.wustl.edu	37	1	225707050	225707050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	225707050	225707050	G	A	SNP	ENAH	ENST00000366844	human	ensembl	74_37	-1	known	missense	c.652	p.R218W	0.917	NULL	pfam_WH1/EVH1,pfam_VASP_tetra,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380				164	1	0.606061	75	34	31.1927
OBSCN	0	genome.wustl.edu	37	1	228511060	228511060	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	228511060	228511060	A	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.15405	p.Q5135	0.991	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				29	0	0	3	4	57.1429
C1QC	0	genome.wustl.edu	37	1	22973964	22973964	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	22973964	22973964	G	A	SNP	C1QC	ENST00000374637	human	ensembl	74_37	+1	known	silent	c.426	p.A142	0.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QC	HGNC	ENSG00000159189				92	0	0	30	18	37.5
AGT	0	genome.wustl.edu	37	1	230846346	230846346	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	230846346	230846346	A	G	SNP	AGT	ENST00000366667	human	ensembl	74_37	-1	known	missense	c.251	p.L84P	0.005	superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Angiotensinogen	-	no_errors	AGT	HGNC	ENSG00000135744				116	0	0	47	22	31.8841
ARID4B	0	genome.wustl.edu	37	1	235345019	235345019	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	235345019	235345019	T	C	SNP	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	missense	c.3215	p.D1072G	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				83	0	0	55	4	6.77966
ARID4B	0	genome.wustl.edu	37	1	235345283	235345283	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	235345283	235345283	A	G	SNP	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	missense	c.2951	p.L984P	0.937	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				238	1	0.41841	134	22	14.1026
NID1	0	genome.wustl.edu	37	1	236143154	236143154	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	236143154	236143154	G	A	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	silent	c.3477	p.Y1159	0.003	smart_LDLR_classB_rpt	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				101	0	0	36	23	38.9831
IL22RA1	0	genome.wustl.edu	37	1	24447436	24447436	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	24447436	24447436	A	G	SNP	IL22RA1	ENST00000270800	human	ensembl	74_37	-1	novel	silent	c.1584	p.S528	0.090	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL22RA1	HGNC	ENSG00000142677				81	0	0	39	15	27.7778
AHCTF1	0	genome.wustl.edu	37	1	247021071	247021071	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	247021071	247021071	T	C	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	missense	c.4205	p.E1402G	0.000	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				70	0	0	31	17	35.4167
ZNF496	0	genome.wustl.edu	37	1	247464040	247464040	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	247464040	247464040	G	A	SNP	ZNF496	ENST00000366498	human	ensembl	74_37	-1	known	silent	c.1653	p.N551	0.004	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714				207	0	0	97	22	18.4874
OR2L2	0	genome.wustl.edu	37	1	248201652	248201652	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	248201652	248201652	C	A	SNP	OR2L2	ENST00000366479	human	ensembl	74_37	+1	known	missense	c.83	p.T28N	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L2	HGNC	ENSG00000203663				296	0	0	173	68	28.2158
OR2T6	0	genome.wustl.edu	37	1	248551111	248551111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	248551111	248551111	G	A	SNP	OR2T6	ENST00000355728	human	ensembl	74_37	+1	known	missense	c.202	p.V68I	0.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2T6	HGNC	ENSG00000198104				100	0	0	64	33	34.0206
FAM213B	0	genome.wustl.edu	37	1	2519961	2519961	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	2519961	2519961	T	C	SNP	FAM213B	ENST00000477045	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.071	-	-	-	no_errors	FAM213B	HGNC	ENSG00000157870				331	0	0	80	47	37.0079
TMEM57	0	genome.wustl.edu	37	1	25780773	25780773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	25780773	25780773	G	A	SNP	TMEM57	ENST00000374343	human	ensembl	74_37	+1	known	missense	c.373	p.V125M	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178				105	0	0	47	21	30.8824
EXTL1	0	genome.wustl.edu	37	1	26349202	26349202	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	26349202	26349202	T	C	SNP	EXTL1	ENST00000374280	human	ensembl	74_37	+1	known	missense	c.65	p.V22A	0.259	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL1	HGNC	ENSG00000158008				122	0	0	35	10	22.2222
HMGN2	0	genome.wustl.edu	37	1	26801762	26801762	+	RNA	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	26801762	26801762	G	T	SNP	HMGN2	ENST00000460563	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGN2	HGNC	ENSG00000198830				17	0	0	6	6	50
ARID1A	0	genome.wustl.edu	37	1	27101055	27101055	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	27101055	27101055	G	A	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.4337	p.R1446Q	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				167	0	0	77	27	25.9615
GPATCH3	0	genome.wustl.edu	37	1	27218981	27218981	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	27218981	27218981	C	A	SNP	GPATCH3	ENST00000361720	human	ensembl	74_37	-1	known	missense	c.1282	p.G428C	1.000	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746				123	0	0	56	25	30.8642
AHDC1	0	genome.wustl.edu	37	1	27878058	27878058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	27878058	27878058	G	A	SNP	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	missense	c.569	p.S190L	0.198	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705				161	0	0	75	10	11.7647
MED18	0	genome.wustl.edu	37	1	28661170	28661170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	28661170	28661170	G	A	SNP	MED18	ENST00000373842	human	ensembl	74_37	+1	known	missense	c.316	p.V106M	1.000	pfam_Mediator_Med18_met/fun	pfam_Mediator_Med18_met/fun	-	no_errors	MED18	HGNC	ENSG00000130772				146	0	0	86	46	34.8485
TMEM200B	0	genome.wustl.edu	37	1	29447582	29447582	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	29447582	29447582	G	T	SNP	TMEM200B	ENST00000420504	human	ensembl	74_37	-1	known	silent	c.759	p.S253	1.000	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200B	HGNC	ENSG00000253304				76	0	0	27	12	30.7692
PUM1	0	genome.wustl.edu	37	1	31465500	31465500	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	31465500	31465500	G	T	SNP	PUM1	ENST00000426105	human	ensembl	74_37	-1	known	missense	c.895	p.P299T	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644				103	0	0	84	17	16.8317
TINAGL1	0	genome.wustl.edu	37	1	32049152	32049152	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	32049152	32049152	G	A	SNP	TINAGL1	ENST00000271064	human	ensembl	74_37	+1	known	silent	c.558	p.S186	0.435	NULL	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAGL1	HGNC	ENSG00000142910				38	0	0	14	8	36.3636
LCK	0	genome.wustl.edu	37	1	32740967	32740967	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	32740967	32740967	A	T	SNP	LCK	ENST00000333070	human	ensembl	74_37	+1	known	missense	c.324	p.E108D	1.000	pfam_SH3_domain,pfam_SH3_2,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LCK	HGNC	ENSG00000182866				79	0	0	29	11	27.5
RBBP4	0	genome.wustl.edu	37	1	33133933	33133933	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	33133933	33133933	A	G	SNP	RBBP4	ENST00000373493	human	ensembl	74_37	+1	known	missense	c.418	p.I140V	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_Histone-bd_RBBP4_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RBBP4	HGNC	ENSG00000162521				113	0	0	68	21	23.5955
YARS	0	genome.wustl.edu	37	1	33272165	33272165	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	33272165	33272165	T	C	SNP	YARS	ENST00000373477	human	ensembl	74_37	-1	known	missense	c.428	p.H143R	1.000	pfam_aa-tRNA-synth_Ic,tigrfam_Tyr-tRNA-ligase	pfam_aa-tRNA-synth_Ic,pfam_tRNA-bd_dom,superfamily_NA-bd_OB-fold,prints_Tyr-tRNA-ligase,pfscan_tRNA-bd_dom,tigrfam_Tyr-tRNA-ligase	-	no_errors	YARS	HGNC	ENSG00000134684				212	0	0	141	9	6
NCDN	0	genome.wustl.edu	37	1	36023989	36023989	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	36023989	36023989	G	A	SNP	NCDN	ENST00000459931	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NCDN	HGNC	ENSG00000020129				11	0	0	18	10	35.7143
MAP7D1	0	genome.wustl.edu	37	1	36641819	36641819	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	36641819	36641819	C	T	SNP	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	silent	c.870	p.S290	0.995	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				49	0	0	19	7	26.9231
SH3D21	0	genome.wustl.edu	37	1	36785312	36785312	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	36785312	36785312	G	C	SNP	SH3D21	ENST00000453908	human	ensembl	74_37	+1	known	missense	c.1048	p.V350L	0.006	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	SH3D21	HGNC	ENSG00000214193				34	0	0	13	3	18.75
CEP104	0	genome.wustl.edu	37	1	3750491	3750491	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	3750491	3750491	C	T	SNP	CEP104	ENST00000378230	human	ensembl	74_37	-1	known	missense	c.1594	p.V532I	0.000	superfamily_ARM-type_fold	superfamily_Galactose-bd-like,superfamily_ARM-type_fold	-	no_errors	CEP104	HGNC	ENSG00000116198				141	0	0	47	17	26.5625
SF3A3	0	genome.wustl.edu	37	1	38423870	38423870	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	38423870	38423870	T	G	SNP	SF3A3	ENST00000373019	human	ensembl	74_37	-1	known	missense	c.1494	p.Q498H	1.000	pfam_DUF3449	pfam_DUF3449,pfam_SF3a60_bindingd,pfscan_Znf_C2H2_matrin	-	no_errors	SF3A3	HGNC	ENSG00000183431				113	0	0	43	22	33.8462
MACF1	0	genome.wustl.edu	37	1	39800373	39800373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	39800373	39800373	G	A	SNP	MACF1	ENST00000567887	human	ensembl	74_37	+1	putative	missense	c.8224	p.A2742T	0.143	pfam_Plectin_repeat,superfamily_RNaseH-like_dom,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				83	0	0	44	17	27.8689
RIMKLA	0	genome.wustl.edu	37	1	42870241	42870241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	42870241	42870241	G	A	SNP	RIMKLA	ENST00000431473	human	ensembl	74_37	+1	known	missense	c.454	p.V152M	0.998	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLA	HGNC	ENSG00000177181				134	0	0	40	15	27.2727
RIMKLA	0	genome.wustl.edu	37	1	42880340	42880340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	42880340	42880340	G	A	SNP	RIMKLA	ENST00000431473	human	ensembl	74_37	+1	known	missense	c.871	p.V291M	1.000	pfam_ATP-grasp_RimK-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLA	HGNC	ENSG00000177181				304	0	0	148	77	34.2222
ENSG00000230615	0	genome.wustl.edu	37	1	44570177	44570177	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	44570177	44570177	T	C	SNP	ENSG00000230615	ENST00000434244	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP5-1198O20.4	Clone_based_vega_gene	ENSG00000230615				95	0	0	39	16	29.0909
RNF220	0	genome.wustl.edu	37	1	45079871	45079871	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	45079871	45079871	G	A	SNP	RNF220	ENST00000355387	human	ensembl	74_37	+1	known	silent	c.660	p.Q220	1.000	NULL	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147				166	0	0	60	24	28.5714
ZSWIM5	0	genome.wustl.edu	37	1	45553711	45553711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	45553711	45553711	C	T	SNP	ZSWIM5	ENST00000359600	human	ensembl	74_37	-1	known	missense	c.794	p.R265H	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415				262	0	0	147	74	33.4842
NASP	0	genome.wustl.edu	37	1	46068012	46068012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	46068012	46068012	G	A	SNP	NASP	ENST00000402363	human	ensembl	74_37	+1	known	missense	c.199	p.A67T	1.000	smart_TPR_repeat	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780				149	0	0	74	27	26.7327
FOXD2	0	genome.wustl.edu	37	1	47904205	47904205	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	47904205	47904205	T	C	SNP	FOXD2	ENST00000334793	human	ensembl	74_37	+1	known	missense	c.398	p.I133T	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD2	HGNC	ENSG00000186564				119	0	0	38	21	35.5932
CC2D1B	0	genome.wustl.edu	37	1	52821976	52821976	+	Splice_Site	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	52821976	52821976	T	C	SNP	CC2D1B	ENST00000371586	human	ensembl	74_37	-1	known	splice_site	c.1956-2	e17-2	1.000	-	-	-	no_errors	CC2D1B	HGNC	ENSG00000154222				274	0	0	125	25	16.6667
DAB1	0	genome.wustl.edu	37	1	57535092	57535092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	57535092	57535092	C	T	SNP	DAB1	ENST00000371231	human	ensembl	74_37	-1	known	missense	c.604	p.V202M	1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB1	HGNC	ENSG00000173406				137	0	0	58	21	26.5823
DOCK7	0	genome.wustl.edu	37	1	63113432	63113432	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	63113432	63113432	G	A	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	missense	c.748	p.R250W	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641				207	0	0	105	55	34.375
ANKRD13C	0	genome.wustl.edu	37	1	70766480	70766480	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	70766480	70766480	A	G	SNP	ANKRD13C	ENST00000370944	human	ensembl	74_37	-1	known	silent	c.888	p.N296	1.000	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD13C	HGNC	ENSG00000118454				44	0	0	23	12	34.2857
ENSG00000224149	0	genome.wustl.edu	37	1	75596159	75596159	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	75596159	75596159	C	T	SNP	ENSG00000224149	ENST00000427892	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-510C10.3	Clone_based_vega_gene	ENSG00000224149				10	0	0	4	4	50
FAM73A	0	genome.wustl.edu	37	1	78249019	78249019	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	78249019	78249019	T	C	SNP	FAM73A	ENST00000370791	human	ensembl	74_37	+1	known	missense	c.178	p.Y60H	1.000	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73A	HGNC	ENSG00000180488				116	0	0	76	6	7.31707
LMO4	0	genome.wustl.edu	37	1	87810502	87810502	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	87810502	87810502	C	T	SNP	LMO4	ENST00000489303	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LMO4	HGNC	ENSG00000143013				81	0	0	34	20	37.037
LRRC8C	0	genome.wustl.edu	37	1	90179605	90179605	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	90179605	90179605	C	T	SNP	LRRC8C	ENST00000370454	human	ensembl	74_37	+1	known	silent	c.1476	p.N492	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488				90	0	0	52	32	38.0952
GFI1	0	genome.wustl.edu	37	1	92948991	92948991	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	92948991	92948991	C	T	SNP	GFI1	ENST00000294702	human	ensembl	74_37	-1	known	silent	c.54	p.P18	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GFI1	HGNC	ENSG00000162676				51	0	0	17	16	48.4848
R3HCC1L	0	genome.wustl.edu	37	10	100003868	100003868	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	100003868	100003868	A	G	SNP	R3HCC1L	ENST00000370584	human	ensembl	74_37	+1	known	missense	c.2290	p.K764E	1.000	NULL	NULL	-	no_errors	R3HCC1L	HGNC	ENSG00000166024				124	0	0	33	9	21.4286
PKD2L1	0	genome.wustl.edu	37	10	102051105	102051105	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	102051105	102051105	C	A	SNP	PKD2L1	ENST00000318222	human	ensembl	74_37	-1	known	missense	c.1960	p.D654Y	1.000	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2L1	HGNC	ENSG00000107593				119	0	0	55	26	32.0988
LBX1	0	genome.wustl.edu	37	10	102988546	102988546	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	102988546	102988546	C	A	SNP	LBX1	ENST00000370193	human	ensembl	74_37	-1	known	silent	c.27	p.A9	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	LBX1	HGNC	ENSG00000138136				56	0	0	11	7	38.8889
BTRC	0	genome.wustl.edu	37	10	103295124	103295124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	103295124	103295124	G	A	SNP	BTRC	ENST00000370187	human	ensembl	74_37	+1	known	missense	c.1361	p.S454N	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167				144	0	0	57	29	33.7209
HPS6	0	genome.wustl.edu	37	10	103826899	103826899	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	103826899	103826899	A	G	SNP	HPS6	ENST00000299238	human	ensembl	74_37	+1	known	silent	c.1668	p.E556	0.026	pirsf_BLOC-2_complex_Hps6_subunit	pirsf_BLOC-2_complex_Hps6_subunit	-	no_errors	HPS6	HGNC	ENSG00000166189				182	1	0.546448	77	24	23.7624
SUFU	0	genome.wustl.edu	37	10	104377154	104377154	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	104377154	104377154	A	G	SNP	SUFU	ENST00000369902	human	ensembl	74_37	+1	known	missense	c.1265	p.H422R	1.000	pfam_SUFU_C,pirsf_Suppressor_of_fused_euk	pfam_SUFU_C,pfam_SUFU-like_domain,pirsf_Suppressor_of_fused_euk	-	no_errors	SUFU	HGNC	ENSG00000107882				149	0	0	68	24	26.087
SORCS3	0	genome.wustl.edu	37	10	106959852	106959852	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	106959852	106959852	A	G	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.2105	p.Q702R	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				199	0	0	52	36	40.9091
CELF2	0	genome.wustl.edu	37	10	11356215	11356215	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	11356215	11356215	C	T	SNP	CELF2	ENST00000450189	human	ensembl	74_37	+1	known	silent	c.1090	p.L364	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	CELF2	HGNC	ENSG00000048740				113	0	0	49	18	26.8657
NRAP	0	genome.wustl.edu	37	10	115413781	115413781	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	115413781	115413781	T	G	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	missense	c.464	p.E155A	1.000	NULL	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				381	0	0	130	51	28.1768
TRUB1	0	genome.wustl.edu	37	10	116702484	116702484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	116702484	116702484	G	A	SNP	TRUB1	ENST00000298746	human	ensembl	74_37	+1	known	missense	c.367	p.A123T	0.987	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	-	no_errors	TRUB1	HGNC	ENSG00000165832				89	0	0	23	12	34.2857
PPAPDC1A	0	genome.wustl.edu	37	10	122348993	122348993	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	122348993	122348993	G	A	SNP	PPAPDC1A	ENST00000398250	human	ensembl	74_37	+1	known	silent	c.795	p.G265	0.969	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAPDC1A	HGNC	ENSG00000203805				77	0	0	37	11	22.9167
BTBD16	0	genome.wustl.edu	37	10	124050682	124050682	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	124050682	124050682	T	G	SNP	BTBD16	ENST00000368994	human	ensembl	74_37	+1	known	missense	c.566	p.I189S	0.021	superfamily_BTB/POZ_fold	superfamily_BTB/POZ_fold	-	no_errors	BTBD16	HGNC	ENSG00000138152				217	0	0	92	7	7.07071
C10orf90	0	genome.wustl.edu	37	10	128193497	128193497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	128193497	128193497	C	T	SNP	C10orf90	ENST00000544758	human	ensembl	74_37	-1	known	missense	c.563	p.R188H	0.000	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493				208	0	0	68	42	38.1818
CAMK1D	0	genome.wustl.edu	37	10	12870861	12870861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	12870861	12870861	C	T	SNP	CAMK1D	ENST00000378847	human	ensembl	74_37	+1	known	missense	c.1133	p.T378M	0.983	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK1D	HGNC	ENSG00000183049				47	0	0	16	8	33.3333
FOXI2	0	genome.wustl.edu	37	10	129537128	129537128	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	129537128	129537128	A	G	SNP	FOXI2	ENST00000388920	human	ensembl	74_37	+1	known	missense	c.856	p.T286A	0.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXI2	HGNC	ENSG00000186766				40	0	0	10	4	28.5714
DPYSL4	0	genome.wustl.edu	37	10	134014423	134014423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	134014423	134014423	C	T	SNP	DPYSL4	ENST00000338492	human	ensembl	74_37	+1	known	missense	c.1046	p.A349V	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL4	HGNC	ENSG00000151640				75	0	0	24	8	25
PTER	0	genome.wustl.edu	37	10	16528646	16528646	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	16528646	16528646	A	G	SNP	PTER	ENST00000485788	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PTER	HGNC	ENSG00000165983				78	0	0	45	21	31.8182
VIM	0	genome.wustl.edu	37	10	17277877	17277877	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	17277877	17277877	T	C	SNP	VIM	ENST00000224237	human	ensembl	74_37	+1	known	missense	c.1262	p.L421P	1.000	NULL	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	VIM	HGNC	ENSG00000026025				80	0	0	46	9	16.3636
ENSG00000240291	0	genome.wustl.edu	37	10	18828137	18828137	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	18828137	18828137	G	A	SNP	ENSG00000240291	ENST00000425669	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-499P20.2	Clone_based_vega_gene	ENSG00000240291				127	0	0	58	30	34.0909
NEBL	0	genome.wustl.edu	37	10	21097468	21097468	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	21097468	21097468	C	T	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	missense	c.2732	p.S911N	1.000	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				154	0	0	68	23	25.2747
KIAA1217	0	genome.wustl.edu	37	10	24835164	24835164	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	24835164	24835164	A	G	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.5743	p.T1915A	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				133	0	0	61	9	12.8571
ARHGAP21	0	genome.wustl.edu	37	10	25010939	25010939	+	RNA	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	25010939	25010939	A	C	SNP	ARHGAP21	ENST00000472150	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARHGAP21	HGNC	ENSG00000107863				14	0	0	7	4	36.3636
MYO3A	0	genome.wustl.edu	37	10	26286159	26286159	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	26286159	26286159	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	silent	c.480	p.T160	0.323	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				106	0	0	40	13	24.5283
ZMYND11	0	genome.wustl.edu	37	10	267248	267248	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	267248	267248	G	C	SNP	ZMYND11	ENST00000381591	human	ensembl	74_37	+1	known	missense	c.390	p.E130D	1.000	superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_PWWP_dom,pfam_Bromodomain,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND11	HGNC	ENSG00000015171				160	0	0	85	35	29.1667
ANKRD26	0	genome.wustl.edu	37	10	27306639	27306639	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	27306639	27306639	T	C	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	missense	c.4346	p.E1449G	0.010	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				67	0	0	51	6	10.5263
ANKRD26	0	genome.wustl.edu	37	10	27324065	27324065	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	27324065	27324065	T	C	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	missense	c.3362	p.Q1121R	0.001	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				226	0	0	180	10	5.26316
YME1L1	0	genome.wustl.edu	37	10	27425268	27425268	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	27425268	27425268	T	C	SNP	YME1L1	ENST00000326799	human	ensembl	74_37	-1	known	silent	c.648	p.R216	0.917	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758				91	0	0	39	24	38.0952
ARMC4	0	genome.wustl.edu	37	10	28284024	28284024	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	28284024	28284024	A	G	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	silent	c.48	p.H16	0.262	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126				95	0	0	33	18	35.2941
BMS1	0	genome.wustl.edu	37	10	43297643	43297643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	43297643	43297643	C	T	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	missense	c.2306	p.A769V	1.000	superfamily_P-loop_NTPase	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				120	1	0.826446	40	27	40.2985
BMS1	0	genome.wustl.edu	37	10	43316002	43316002	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	43316002	43316002	G	T	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	missense	c.2816	p.R939L	1.000	pfam_BMS1_TSR1_C	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				98	0	0	55	21	27.6316
RET	0	genome.wustl.edu	37	10	43609082	43609082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	43609082	43609082	C	T	SNP	RET	ENST00000355710	human	ensembl	74_37	+1	known	missense	c.1838	p.P613L	0.865	pirsf_Tyr_kinase_Ret_rcpt	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731				50	0	0	18	5	21.7391
FRMPD2	0	genome.wustl.edu	37	10	49450202	49450202	+	Splice_Site	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	49450202	49450202	A	G	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	splice_site	c.567+2	e5+2	0.989	-	-	-	no_errors	FRMPD2	HGNC	ENSG00000170324				177	0	0	59	35	37.234
VSTM4	0	genome.wustl.edu	37	10	50315772	50315772	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	50315772	50315772	C	T	SNP	VSTM4	ENST00000332853	human	ensembl	74_37	-1	known	silent	c.324	p.A108	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VSTM4	HGNC	ENSG00000165633				152	0	0	65	27	29.3478
AGAP8	0	genome.wustl.edu	37	10	51225182	51225182	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	51225182	51225182	G	A	SNP	AGAP8	ENST00000425119	human	ensembl	74_37	-1	known	silent	c.1800	p.D600	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP8	HGNC	ENSG00000174194				125	0	0	60	9	13.0435
PCDH15	0	genome.wustl.edu	37	10	55566601	55566601	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	55566601	55566601	A	G	SNP	PCDH15	ENST00000414778	human	ensembl	74_37	-1	known	missense	c.4784	p.L1595S	0.094	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				411	0	0	172	85	33.0739
GDI2	0	genome.wustl.edu	37	10	5827903	5827903	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	5827903	5827903	T	C	SNP	GDI2	ENST00000380132	human	ensembl	74_37	-1	known	missense	c.511	p.T171A	0.001	pfam_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI2	HGNC	ENSG00000057608				137	0	0	90	6	6.25
ARID5B	0	genome.wustl.edu	37	10	63851281	63851281	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	63851281	63851281	A	G	SNP	ARID5B	ENST00000279873	human	ensembl	74_37	+1	known	missense	c.2059	p.M687V	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID5B	HGNC	ENSG00000150347				79	0	0	50	17	25.3731
JMJD1C-AS1	0	genome.wustl.edu	37	10	65225233	65225233	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	65225233	65225233	A	G	SNP	JMJD1C-AS1	ENST00000609436	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	JMJD1C-AS1	HGNC	ENSG00000272767				18	0	0	6	6	50
DNA2	0	genome.wustl.edu	37	10	70182529	70182529	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	70182529	70182529	A	G	SNP	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	missense	c.2585	p.L862P	1.000	superfamily_P-loop_NTPase	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				66	0	0	31	18	36.7347
PSAP	0	genome.wustl.edu	37	10	73579254	73579254	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	73579254	73579254	A	G	SNP	PSAP	ENST00000394934	human	ensembl	74_37	-1	known	missense	c.1324	p.C442R	1.000	pirsf_Saposin_chordata,pfam_SapB_1,superfamily_Saposin-like,smart_SaposinB,prints_Saposin,pfscan_SaposinB	pirsf_Saposin_chordata,pfam_SapB_1,pfam_SapB_2,pfam_SapA,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_errors	PSAP	HGNC	ENSG00000197746				110	0	0	68	5	6.84932
P4HA1	0	genome.wustl.edu	37	10	74834629	74834629	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	74834629	74834629	T	C	SNP	P4HA1	ENST00000263556	human	ensembl	74_37	-1	known	missense	c.13	p.I5V	0.001	NULL	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA1	HGNC	ENSG00000122884				74	0	0	31	21	40.3846
AGAP5	0	genome.wustl.edu	37	10	75434380	75434380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	75434380	75434380	C	T	SNP	AGAP5	ENST00000374094	human	ensembl	74_37	-1	known	missense	c.2038	p.G680S	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP5	HGNC	ENSG00000172650				109	0	0	44	20	31.25
NDST2	0	genome.wustl.edu	37	10	75564621	75564621	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	75564621	75564621	A	G	SNP	NDST2	ENST00000309979	human	ensembl	74_37	-1	known	missense	c.1753	p.C585R	1.000	superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST2	HGNC	ENSG00000166507				81	0	0	31	20	39.2157
AP3M1	0	genome.wustl.edu	37	10	75884257	75884257	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	75884257	75884257	A	T	SNP	AP3M1	ENST00000355264	human	ensembl	74_37	-1	known	missense	c.1037	p.I346N	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M1	HGNC	ENSG00000185009				67	0	0	47	23	32.8571
KAT6B	0	genome.wustl.edu	37	10	76780463	76780463	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	76780463	76780463	A	G	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	missense	c.2753	p.H918R	0.986	pfam_MOZ_SAS,superfamily_Acyl_CoA_acyltransferase	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				107	0	0	41	20	32.7869
KCNMA1	0	genome.wustl.edu	37	10	79010963	79010963	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	79010963	79010963	C	A	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.592	p.D198Y	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				69	0	0	21	11	34.375
CDHR1	0	genome.wustl.edu	37	10	85967975	85967975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	85967975	85967975	G	A	SNP	CDHR1	ENST00000372117	human	ensembl	74_37	+1	known	missense	c.1009	p.V337I	0.065	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR1	HGNC	ENSG00000148600				110	0	0	45	4	8.16327
MMRN2	0	genome.wustl.edu	37	10	88717266	88717266	+	Silent	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	88717266	88717266	G	C	SNP	MMRN2	ENST00000372027	human	ensembl	74_37	-1	known	silent	c.33	p.G11	0.007	NULL	pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like_dom,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	MMRN2	HGNC	ENSG00000173269				230	0	0	79	36	31.3043
TNKS2	0	genome.wustl.edu	37	10	93579761	93579761	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	93579761	93579761	T	C	SNP	TNKS2	ENST00000371627	human	ensembl	74_37	+1	known	silent	c.699	p.H233	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854				211	1	0.471698	66	46	41.0714
HELLS	0	genome.wustl.edu	37	10	96336485	96336485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	96336485	96336485	C	T	SNP	HELLS	ENST00000371332	human	ensembl	74_37	+1	known	missense	c.955	p.R319W	0.796	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELLS	HGNC	ENSG00000119969				100	0	0	46	4	8
ALDH18A1	0	genome.wustl.edu	37	10	97373858	97373858	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	97373858	97373858	T	C	SNP	ALDH18A1	ENST00000371224	human	ensembl	74_37	-1	known	missense	c.1666	p.I556V	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_P5_carboxy_syn,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	pfam_Asp/Glu/Uridylate_kinase,pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,prints_Glu/AcGlu_kinase,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	-	no_errors	ALDH18A1	HGNC	ENSG00000059573				475	0	0	169	94	35.7414
PGR	0	genome.wustl.edu	37	11	100999009	100999009	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	100999009	100999009	C	T	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	missense	c.793	p.V265I	0.001	pfam_Progest_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				22	0	0	12	5	29.4118
DYNC2H1	0	genome.wustl.edu	37	11	103178458	103178458	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	103178458	103178458	T	C	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	silent	c.11412	p.N3804	0.990	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				21	0	0	7	3	30
SLC35F2	0	genome.wustl.edu	37	11	107676145	107676145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	107676145	107676145	C	T	SNP	SLC35F2	ENST00000429869	human	ensembl	74_37	-1	known	missense	c.671	p.S224N	1.000	pfam_SLC35_F1/F2/F6,pfam_DMT,pfam_UAA,pfam_Tpt_PEP_trans_dom	pfam_SLC35_F1/F2/F6,pfam_DMT,pfam_UAA,pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35F2	HGNC	ENSG00000110660				87	0	0	44	15	25.4237
CTR9	0	genome.wustl.edu	37	11	10785668	10785668	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	10785668	10785668	A	G	SNP	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	missense	c.1204	p.K402E	1.000	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				159	0	0	55	30	35.2941
C11orf52	0	genome.wustl.edu	37	11	111796714	111796714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	111796714	111796714	C	T	SNP	C11orf52	ENST00000278601	human	ensembl	74_37	+1	known	missense	c.163	p.R55W	0.009	NULL	NULL	-	no_errors	C11orf52	HGNC	ENSG00000149300				76	0	0	32	20	38.4615
C11orf52	0	genome.wustl.edu	37	11	111796981	111796981	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	111796981	111796981	A	G	SNP	C11orf52	ENST00000527286	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C11orf52	HGNC	ENSG00000149300				88	0	0	26	16	38.0952
DSCAML1	0	genome.wustl.edu	37	11	117374594	117374594	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	117374594	117374594	G	T	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	silent	c.2505	p.T835	0.773	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				80	0	0	36	14	28
VPS11	0	genome.wustl.edu	37	11	118947751	118947751	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	118947751	118947751	T	C	SNP	VPS11	ENST00000300793	human	ensembl	74_37	+1	known	silent	c.1380	p.Y460	0.738	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,pirsf_VPS11	pfam_VPS11_C,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_RING,pirsf_VPS11,pfscan_Znf_RING	-	no_errors	VPS11	HGNC	ENSG00000160695				42	0	0	13	7	35
MICAL2	0	genome.wustl.edu	37	11	12245002	12245002	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	12245002	12245002	C	T	SNP	MICAL2	ENST00000256194	human	ensembl	74_37	+1	known	silent	c.1494	p.L498	0.688	superfamily_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL2	HGNC	ENSG00000133816				188	0	0	63	25	28.4091
C11orf63	0	genome.wustl.edu	37	11	122817304	122817304	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	122817304	122817304	T	C	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	missense	c.1733	p.L578P	0.999	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				79	0	0	56	4	6.66667
OR8B4	0	genome.wustl.edu	37	11	124294529	124294529	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	124294529	124294529	T	C	SNP	OR8B4	ENST00000356130	human	ensembl	74_37	-1	known	missense	c.239	p.K80R	0.991	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B4	HGNC	ENSG00000198657				120	0	0	76	7	8.43373
SPA17	0	genome.wustl.edu	37	11	124561622	124561622	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	124561622	124561622	A	C	SNP	SPA17	ENST00000227135	human	ensembl	74_37	+1	putative	missense	c.256	p.K86Q	0.015	pirsf_Sp17	pfam_cAMP_dep_PK_reg_su_I/II_a/b,pfam_IQ_motif_EF-hand-BS,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_P-loop_NTPase,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_IQ_motif_EF-hand-BS,pirsf_Sp17,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPA17	HGNC	ENSG00000064199				97	0	0	56	37	39.7849
CDON	0	genome.wustl.edu	37	11	125887121	125887121	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	125887121	125887121	G	T	SNP	CDON	ENST00000392693	human	ensembl	74_37	-1	known	missense	c.790	p.P264T	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CDON	HGNC	ENSG00000064309				127	0	0	62	27	30.3371
FOXRED1	0	genome.wustl.edu	37	11	126145767	126145767	+	Splice_Site	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	126145767	126145767	T	C	SNP	FOXRED1	ENST00000263578	human	ensembl	74_37	+1	known	splice_site	c.810+2	e7+2	1.000	-	-	-	no_errors	FOXRED1	HGNC	ENSG00000110074				74	0	0	34	13	27.6596
MUC5B	0	genome.wustl.edu	37	11	1272703	1272703	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	1272703	1272703	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.14602	p.A4868T	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				145	1	0.684932	43	20	31.746
MUC5B	0	genome.wustl.edu	37	11	1275371	1275371	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	1275371	1275371	C	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.15276	p.T5092	0.654	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				71	0	0	29	11	27.5
FLI1	0	genome.wustl.edu	37	11	128680407	128680407	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	128680407	128680407	G	A	SNP	FLI1	ENST00000527786	human	ensembl	74_37	+1	known	missense	c.883	p.A295T	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	FLI1	HGNC	ENSG00000151702				19	0	0	14	2	12.5
ARHGAP32	0	genome.wustl.edu	37	11	128840436	128840436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	128840436	128840436	C	T	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	missense	c.4630	p.A1544T	0.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				80	0	0	33	18	35.2941
NFRKB	0	genome.wustl.edu	37	11	129739494	129739494	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	129739494	129739494	T	C	SNP	NFRKB	ENST00000524794	human	ensembl	74_37	-1	known	silent	c.3501	p.V1167	1.000	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322				148	0	0	53	28	34.5679
IGSF9B	0	genome.wustl.edu	37	11	133805527	133805527	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	133805527	133805527	A	G	SNP	IGSF9B	ENST00000321016	human	ensembl	74_37	-1	known	missense	c.952	p.Y318H	0.991	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF9B	HGNC	ENSG00000080854				32	0	0	7	3	30
COPB1	0	genome.wustl.edu	37	11	14498463	14498463	+	Splice_Site	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	14498463	14498463	A	G	SNP	COPB1	ENST00000249923	human	ensembl	74_37	-1	known	splice_site	c.1455+2	e11+2	1.000	-	-	-	no_errors	COPB1	HGNC	ENSG00000129083				131	0	0	71	28	28.2828
PDE3B	0	genome.wustl.edu	37	11	14865502	14865502	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	14865502	14865502	C	T	SNP	PDE3B	ENST00000282096	human	ensembl	74_37	+1	known	missense	c.2450	p.A817V	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270				207	0	0	93	49	34.507
KRTAP5-5	0	genome.wustl.edu	37	11	1651119	1651119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	1651119	1651119	C	T	SNP	KRTAP5-5	ENST00000399676	human	ensembl	74_37	+1	known	missense	c.49	p.R17C	0.996	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940				338	0	0	116	26	18.3099
KRTAP5-5	0	genome.wustl.edu	37	11	1651136	1651136	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	1651136	1651136	G	A	SNP	KRTAP5-5	ENST00000399676	human	ensembl	74_37	+1	known	silent	c.66	p.G22	0.282	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940				301	0	0	121	19	13.5714
KRTAP5-5	0	genome.wustl.edu	37	11	1651322	1651322	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	1651322	1651322	T	C	SNP	KRTAP5-5	ENST00000399676	human	ensembl	74_37	+1	known	silent	c.252	p.C84	1.000	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940				400	1	0.249377	140	21	13.0435
ABCC8	0	genome.wustl.edu	37	11	17419241	17419241	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	17419241	17419241	T	C	SNP	ABCC8	ENST00000302539	human	ensembl	74_37	-1	known	missense	c.3860	p.Y1287C	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC8	HGNC	ENSG00000006071				66	0	0	14	9	39.1304
MRGPRX1	0	genome.wustl.edu	37	11	18956195	18956195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	18956195	18956195	G	A	SNP	MRGPRX1	ENST00000302797	human	ensembl	74_37	-1	known	missense	c.137	p.A46V	0.026	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255				244	0	0	113	80	41.4508
ATHL1	0	genome.wustl.edu	37	11	293653	293653	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	293653	293653	A	G	SNP	ATHL1	ENST00000409548	human	ensembl	74_37	+1	known	missense	c.1540	p.S514G	0.837	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102				153	0	0	83	18	17.8218
DCDC1	0	genome.wustl.edu	37	11	30915848	30915848	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	30915848	30915848	T	C	SNP	DCDC1	ENST00000406071	human	ensembl	74_37	-1	known	missense	c.1054	p.T352A	0.965	NULL	NULL	-	no_errors	DCDC1	HGNC	ENSG00000170959				86	0	0	38	14	26.9231
PAX6	0	genome.wustl.edu	37	11	31812409	31812409	+	Splice_Site	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	31812409	31812409	C	T	SNP	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	splice_site	c.1075-1	e10-1	1.000	-	-	-	no_errors	PAX6	HGNC	ENSG00000007372				53	0	0	25	11	30.5556
PRR5L	0	genome.wustl.edu	37	11	36458986	36458986	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	36458986	36458986	A	T	SNP	PRR5L	ENST00000378867	human	ensembl	74_37	+1	known	missense	c.404	p.E135V	1.000	pfam_HbrB	pfam_HbrB	-	no_errors	PRR5L	HGNC	ENSG00000135362				255	0	0	80	41	33.8843
C11orf74	0	genome.wustl.edu	37	11	36654929	36654929	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	36654929	36654929	T	C	SNP	C11orf74	ENST00000334307	human	ensembl	74_37	+1	known	missense	c.232	p.Y78H	0.213	NULL	NULL	-	no_errors	C11orf74	HGNC	ENSG00000166352				76	0	0	38	17	30.9091
ALX4	0	genome.wustl.edu	37	11	44286581	44286581	+	Silent	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	44286581	44286581	A	C	SNP	ALX4	ENST00000329255	human	ensembl	74_37	-1	known	silent	c.1059	p.S353	0.010	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX4	HGNC	ENSG00000052850				83	0	0	36	7	16.2791
CREB3L1	0	genome.wustl.edu	37	11	46329501	46329501	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	46329501	46329501	A	G	SNP	CREB3L1	ENST00000288400	human	ensembl	74_37	+1	known	missense	c.466	p.T156A	0.654	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREB3L1	HGNC	ENSG00000157613				8	0	0	2	2	50
NUP160	0	genome.wustl.edu	37	11	47827804	47827804	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	47827804	47827804	A	T	SNP	NUP160	ENST00000378460	human	ensembl	74_37	-1	known	missense	c.2507	p.I836K	0.717	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066				124	0	0	58	25	30.1205
OR52R1	0	genome.wustl.edu	37	11	4825323	4825323	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	4825323	4825323	C	T	SNP	OR52R1	ENST00000380382	human	ensembl	74_37	-1	known	silent	c.525	p.Q175	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937				182	0	0	61	20	24.6914
OR4X2	0	genome.wustl.edu	37	11	48266720	48266720	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	48266720	48266720	T	C	SNP	OR4X2	ENST00000302329	human	ensembl	74_37	+1	known	missense	c.65	p.I22T	0.301	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4X2	HGNC	ENSG00000172208				154	0	0	132	8	5.71429
OR51S1	0	genome.wustl.edu	37	11	4869564	4869564	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	4869564	4869564	G	T	SNP	OR51S1	ENST00000322101	human	ensembl	74_37	-1	known	missense	c.875	p.P292Q	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51S1	HGNC	ENSG00000176922				193	0	0	82	36	30.5085
TRIM49B	0	genome.wustl.edu	37	11	49053333	49053333	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	49053333	49053333	A	G	SNP	TRIM49B	ENST00000332682	human	ensembl	74_37	+1	known	missense	c.182	p.Q61R	0.046	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM49B	HGNC	ENSG00000182053				84	0	0	58	20	25.641
OR51L1	0	genome.wustl.edu	37	11	5020966	5020966	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	5020966	5020966	A	G	SNP	OR51L1	ENST00000321543	human	ensembl	74_37	+1	known	missense	c.754	p.I252V	0.089	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51L1	HGNC	ENSG00000176798				74	0	0	48	16	25
OR51I2	0	genome.wustl.edu	37	11	5474940	5474940	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	5474940	5474940	C	A	SNP	OR51I2	ENST00000341449	human	ensembl	74_37	+1	known	silent	c.222	p.S74	0.210	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51I2	HGNC	ENSG00000187918				145	0	0	71	42	37.1681
OR5D13	0	genome.wustl.edu	37	11	55541797	55541797	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	55541797	55541797	G	T	SNP	OR5D13	ENST00000361760	human	ensembl	74_37	+1	known	missense	c.884	p.R295M	0.983	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D13	HGNC	ENSG00000198877				77	0	0	37	18	32.7273
TRIM5	0	genome.wustl.edu	37	11	5701079	5701079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	5701079	5701079	C	T	SNP	TRIM5	ENST00000305836	human	ensembl	74_37	-1	known	missense	c.329	p.G110E	0.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM5	HGNC	ENSG00000132256				202	0	0	81	36	30.7692
TRIM5	0	genome.wustl.edu	37	11	5701098	5701098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	5701098	5701098	G	A	SNP	TRIM5	ENST00000305836	human	ensembl	74_37	-1	known	missense	c.310	p.L104F	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM5	HGNC	ENSG00000132256				214	1	0.465116	82	48	36.9231
OR52E8	0	genome.wustl.edu	37	11	5878034	5878034	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	5878034	5878034	C	A	SNP	OR52E8	ENST00000537935	human	ensembl	74_37	-1	known	missense	c.899	p.R300M	0.005	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E8	HGNC	ENSG00000183269				224	0	0	122	46	27.381
OR4D11	0	genome.wustl.edu	37	11	59271395	59271395	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	59271395	59271395	C	G	SNP	OR4D11	ENST00000313253	human	ensembl	74_37	+1	known	missense	c.347	p.S116C	0.959	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D11	HGNC	ENSG00000176200				246	0	0	135	65	32.5
OR10V1	0	genome.wustl.edu	37	11	59480736	59480736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	59480736	59480736	C	T	SNP	OR10V1	ENST00000307552	human	ensembl	74_37	-1	known	missense	c.583	p.V195I	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10V1	HGNC	ENSG00000172289				136	0	0	49	13	20.9677
MS4A2	0	genome.wustl.edu	37	11	59857235	59857235	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	59857235	59857235	T	G	SNP	MS4A2	ENST00000278888	human	ensembl	74_37	+1	known	missense	c.127	p.S43A	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A2	HGNC	ENSG00000149534				123	0	0	62	34	35.4167
DAGLA	0	genome.wustl.edu	37	11	61502351	61502351	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	61502351	61502351	C	T	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	+1	known	silent	c.1005	p.F335	0.956	NULL	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780				298	0	0	102	58	36.25
FTH1	0	genome.wustl.edu	37	11	61732984	61732984	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	61732984	61732984	A	G	SNP	FTH1	ENST00000273550	human	ensembl	74_37	-1	known	missense	c.118	p.Y40H	1.000	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	-	no_errors	FTH1	HGNC	ENSG00000167996				106	0	0	92	34	26.9841
TUT1	0	genome.wustl.edu	37	11	62348933	62348933	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	62348933	62348933	A	G	SNP	TUT1	ENST00000308436	human	ensembl	74_37	-1	known	silent	c.628	p.L210	0.996	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016				77	0	0	34	4	10.5263
HRASLS5	0	genome.wustl.edu	37	11	63233754	63233754	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	63233754	63233754	C	T	SNP	HRASLS5	ENST00000301790	human	ensembl	74_37	-1	known	missense	c.575	p.C192Y	1.000	pfam_LRAT-like_dom	pfam_LRAT-like_dom	-	no_errors	HRASLS5	HGNC	ENSG00000168004				100	0	0	57	20	25.974
RTN3	0	genome.wustl.edu	37	11	63486576	63486576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	63486576	63486576	C	T	SNP	RTN3	ENST00000377819	human	ensembl	74_37	+1	known	missense	c.602	p.A201V	0.001	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				130	0	0	44	30	40.5405
RCOR2	0	genome.wustl.edu	37	11	63681570	63681570	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	63681570	63681570	G	A	SNP	RCOR2	ENST00000301459	human	ensembl	74_37	-1	known	silent	c.747	p.R249	1.000	NULL	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR2	HGNC	ENSG00000167771				218	0	0	59	44	42.7184
CDC42BPG	0	genome.wustl.edu	37	11	64606559	64606559	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	64606559	64606559	C	T	SNP	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	silent	c.822	p.T274	0.645	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219				150	0	0	65	25	27.7778
ATG2A	0	genome.wustl.edu	37	11	64677288	64677288	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	64677288	64677288	G	T	SNP	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	missense	c.1972	p.P658T	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046				92	0	0	21	14	40
TM7SF2	0	genome.wustl.edu	37	11	64880820	64880820	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	64880820	64880820	A	G	SNP	TM7SF2	ENST00000279263	human	ensembl	74_37	+1	known	missense	c.433	p.S145G	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_DUF1295	-	no_errors	TM7SF2	HGNC	ENSG00000149809				145	0	0	120	8	6.25
MALAT1	0	genome.wustl.edu	37	11	65272645	65272645	+	RNA	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	65272645	65272645	T	A	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				75	0	0	28	23	45.098
EHBP1L1	0	genome.wustl.edu	37	11	65349955	65349955	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	65349955	65349955	A	G	SNP	EHBP1L1	ENST00000309295	human	ensembl	74_37	+1	known	missense	c.1812	p.I604M	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442				118	0	0	46	7	13.2075
RELA	0	genome.wustl.edu	37	11	65425862	65425862	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	65425862	65425862	G	A	SNP	RELA	ENST00000406246	human	ensembl	74_37	-1	known	missense	c.773	p.A258V	0.568	superfamily_Ig_E-set,smart_IPT	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NF_Rel_Dor	-	no_errors	RELA	HGNC	ENSG00000173039				58	0	0	16	7	30.4348
GAL3ST3	0	genome.wustl.edu	37	11	65810644	65810644	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	65810644	65810644	G	A	SNP	GAL3ST3	ENST00000312006	human	ensembl	74_37	-1	known	silent	c.630	p.G210	0.852	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST3	HGNC	ENSG00000175229				98	0	0	50	19	27.5362
PACS1	0	genome.wustl.edu	37	11	66002804	66002804	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	66002804	66002804	T	C	SNP	PACS1	ENST00000320580	human	ensembl	74_37	+1	known	missense	c.2137	p.Y713H	1.000	pfam_Phosphofurin_acidic_CS-1	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS1	HGNC	ENSG00000175115				121	0	0	50	5	9.09091
KLC2	0	genome.wustl.edu	37	11	66026206	66026206	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	66026206	66026206	C	T	SNP	KLC2	ENST00000316924	human	ensembl	74_37	+1	known	silent	c.141	p.A47	0.001	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC2	HGNC	ENSG00000174996				118	0	0	26	12	31.5789
CCDC87	0	genome.wustl.edu	37	11	66360309	66360309	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	66360309	66360309	T	C	SNP	CCDC87	ENST00000333861	human	ensembl	74_37	-1	known	missense	c.178	p.S60G	0.027	NULL	pfam_MAP65_Ase1_PRC1	-	no_errors	CCDC87	HGNC	ENSG00000182791				96	0	0	31	10	24.3902
PC	0	genome.wustl.edu	37	11	66618281	66618281	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	66618281	66618281	G	A	SNP	PC	ENST00000393958	human	ensembl	74_37	-1	known	silent	c.2337	p.G779	0.302	pfam_PYR_CT,pirsf_Pyruv_COase,pfscan_PYR_CT,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599				89	0	0	22	19	46.3415
RPS6KB2	0	genome.wustl.edu	37	11	67200863	67200863	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	67200863	67200863	G	T	SNP	RPS6KB2	ENST00000312629	human	ensembl	74_37	+1	known	missense	c.851	p.G284V	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634				248	0	0	51	26	33.7662
CABP4	0	genome.wustl.edu	37	11	67225095	67225095	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	67225095	67225095	T	G	SNP	CABP4	ENST00000325656	human	ensembl	74_37	+1	known	missense	c.593	p.L198R	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP4	HGNC	ENSG00000175544				23	0	0	7	2	22.2222
TMEM134	0	genome.wustl.edu	37	11	67234711	67234711	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	67234711	67234711	C	T	SNP	TMEM134	ENST00000541059	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TMEM134	HGNC	ENSG00000172663				44	0	0	23	6	20.6897
UNC93B1	0	genome.wustl.edu	37	11	67766651	67766651	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	67766651	67766651	A	G	SNP	UNC93B1	ENST00000227471	human	ensembl	74_37	-1	known	missense	c.679	p.F227L	1.000	NULL	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93B1	HGNC	ENSG00000110057				143	0	0	48	7	12.7273
ANO1	0	genome.wustl.edu	37	11	70028683	70028683	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	70028683	70028683	A	G	SNP	ANO1	ENST00000355303	human	ensembl	74_37	+1	known	missense	c.2479	p.M827V	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620				80	0	0	43	4	8.51064
ZNF705E	0	genome.wustl.edu	37	11	71529219	71529219	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	71529219	71529219	C	T	SNP	ZNF705E	ENST00000525199	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF705E	HGNC	ENSG00000214534				135	0	0	70	38	35.1852
P2RY2	0	genome.wustl.edu	37	11	72945484	72945484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	72945484	72945484	G	A	SNP	P2RY2	ENST00000311131	human	ensembl	74_37	+1	known	missense	c.280	p.A94T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y2_rcpt,prints_GPCR_Rhodpsn,prints_P2Y4_rcpt	-	no_errors	P2RY2	HGNC	ENSG00000175591				93	0	0	70	9	11.3924
C2CD3	0	genome.wustl.edu	37	11	73806439	73806439	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	73806439	73806439	T	C	SNP	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	silent	c.2994	p.G998	0.997	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				172	0	0	117	10	7.87402
B3GNT6	0	genome.wustl.edu	37	11	76750860	76750860	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	76750860	76750860	A	G	SNP	B3GNT6	ENST00000533140	human	ensembl	74_37	+1	known	missense	c.265	p.I89V	0.612	NULL	pfam_Glyco_trans_31	-	no_errors	B3GNT6	HGNC	ENSG00000198488				16	0	0	5	3	37.5
TENM4	0	genome.wustl.edu	37	11	78369151	78369151	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	78369151	78369151	G	A	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	silent	c.8262	p.S2754	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				507	1	0.19685	204	75	26.8817
NRIP3	0	genome.wustl.edu	37	11	9005620	9005620	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	9005620	9005620	T	C	SNP	NRIP3	ENST00000309166	human	ensembl	74_37	-1	known	missense	c.614	p.K205R	1.000	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	-	no_errors	NRIP3	HGNC	ENSG00000175352				283	0	0	132	14	9.58904
SCUBE2	0	genome.wustl.edu	37	11	9100944	9100944	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	9100944	9100944	A	G	SNP	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	silent	c.369	p.G123	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356				131	0	0	55	32	36.7816
SNORA1	0	genome.wustl.edu	37	11	93465186	93465186	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	93465186	93465186	A	G	SNP	SNORA1	ENST00000384107	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORA1	HGNC	ENSG00000206834				51	0	0	32	18	36
SESN3	0	genome.wustl.edu	37	11	94918548	94918548	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	94918548	94918548	T	C	SNP	SESN3	ENST00000536441	human	ensembl	74_37	-1	known	missense	c.634	p.I212V	1.000	pfam_PA26	pfam_PA26	-	no_errors	SESN3	HGNC	ENSG00000149212				278	0	0	146	18	10.9756
SBF2	0	genome.wustl.edu	37	11	9875116	9875116	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	9875116	9875116	T	C	SNP	SBF2	ENST00000256190	human	ensembl	74_37	-1	known	missense	c.2507	p.H836R	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812				184	0	0	86	52	37.6812
SCYL2	0	genome.wustl.edu	37	12	100717349	100717349	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	100717349	100717349	A	G	SNP	SCYL2	ENST00000360820	human	ensembl	74_37	+1	known	missense	c.1442	p.Y481C	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021				136	0	0	53	18	25.3521
UTP20	0	genome.wustl.edu	37	12	101773301	101773301	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	101773301	101773301	G	T	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	missense	c.7549	p.A2517S	0.997	NULL	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				188	0	0	100	11	9.90991
TXNRD1	0	genome.wustl.edu	37	12	104715036	104715036	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	104715036	104715036	T	C	SNP	TXNRD1	ENST00000429002	human	ensembl	74_37	+1	known	missense	c.1157	p.I386T	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,tigrfam_Thioredoxin/glutathione_Rdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_nucl-diS_OxRdtase_dimer,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,pfam_Glutaredoxin,superfamily_FAD/NAD-linked_Rdtase_dimer,superfamily_Thioredoxin-like_fold,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase,prints_Pyridine_nuc-diS_OxRdtase_2,tigrfam_Thioredoxin/glutathione_Rdtase	-	no_errors	TXNRD1	HGNC	ENSG00000198431				127	0	0	83	25	23.1481
BTBD11	0	genome.wustl.edu	37	12	107713788	107713788	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	107713788	107713788	C	T	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	silent	c.1071	p.N357	1.000	superfamily_Histone-fold	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				49	0	0	14	9	39.1304
ASCL4	0	genome.wustl.edu	37	12	108169151	108169151	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	108169151	108169151	C	T	SNP	ASCL4	ENST00000342331	human	ensembl	74_37	+1	known	silent	c.159	p.S53	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ASCL4	HGNC	ENSG00000187855				28	0	0	21	12	36.3636
GIT2	0	genome.wustl.edu	37	12	110427530	110427530	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	110427530	110427530	A	G	SNP	GIT2	ENST00000355312	human	ensembl	74_37	-1	known	silent	c.264	p.S88	0.528	pfam_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,pfscan_ArfGAP	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT2	HGNC	ENSG00000139436				136	0	0	71	26	26.8041
ACAD10	0	genome.wustl.edu	37	12	112193494	112193494	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	112193494	112193494	T	C	SNP	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	missense	c.3077	p.M1026T	1.000	pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271				305	0	0	70	42	37.5
NAA25	0	genome.wustl.edu	37	12	112525546	112525546	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	112525546	112525546	A	G	SNP	NAA25	ENST00000261745	human	ensembl	74_37	-1	known	missense	c.343	p.Y115H	1.000	pfscan_TPR-contain_dom	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300				172	0	0	134	24	15.1899
HECTD4	0	genome.wustl.edu	37	12	112650388	112650388	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	112650388	112650388	T	C	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.7016	p.K2339R	1.000	superfamily_ConA-like_lec_gl_sf	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				121	0	0	69	10	12.6582
RPH3A	0	genome.wustl.edu	37	12	113314515	113314515	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	113314515	113314515	T	C	SNP	RPH3A	ENST00000389385	human	ensembl	74_37	+1	known	missense	c.1015	p.Y339H	0.131	NULL	pfam_C2_dom,pfam_Znf_FYVE-typ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel,prints_Synaptotagmin,prints_C2_dom	-	no_errors	RPH3A	HGNC	ENSG00000089169				78	0	0	21	15	41.6667
SDS	0	genome.wustl.edu	37	12	113830824	113830824	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	113830824	113830824	G	A	SNP	SDS	ENST00000257549	human	ensembl	74_37	-1	known	silent	c.909	p.C303	0.292	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SDS	HGNC	ENSG00000135094				324	1	0.307692	144	40	21.7391
SDS	0	genome.wustl.edu	37	12	113835115	113835115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	113835115	113835115	C	T	SNP	SDS	ENST00000257549	human	ensembl	74_37	-1	known	missense	c.508	p.G170R	1.000	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SDS	HGNC	ENSG00000135094				156	0	0	63	26	29.2135
PRB3	0	genome.wustl.edu	37	12	11420716	11420716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	11420716	11420716	G	A	SNP	PRB3	ENST00000381842	human	ensembl	74_37	-1	known	missense	c.467	p.P156L	0.000	NULL	NULL	-	no_errors	PRB3	HGNC	ENSG00000197870				153	0	0	100	34	25.3731
PRB3	0	genome.wustl.edu	37	12	11420779	11420779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	11420779	11420779	G	A	SNP	PRB3	ENST00000381842	human	ensembl	74_37	-1	known	missense	c.404	p.P135L	0.008	NULL	NULL	-	no_errors	PRB3	HGNC	ENSG00000197870				293	0	0	115	50	30.303
TBX5	0	genome.wustl.edu	37	12	114841672	114841672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	114841672	114841672	G	A	SNP	TBX5	ENST00000310346	human	ensembl	74_37	-1	known	missense	c.32	p.A11V	0.895	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225				65	0	0	11	14	56
PRB2	0	genome.wustl.edu	37	12	11546360	11546360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	11546360	11546360	G	A	SNP	PRB2	ENST00000389362	human	ensembl	74_37	-1	known	missense	c.652	p.P218S	0.472	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335				590	0	0	201	107	34.7403
FBXO21	0	genome.wustl.edu	37	12	117595816	117595816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	117595816	117595816	G	A	SNP	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	missense	c.1400	p.A467V	1.000	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				551	1	0.181159	182	93	33.8182
NOS1	0	genome.wustl.edu	37	12	117768159	117768159	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	117768159	117768159	T	C	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.716	p.Q239R	1.000	pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				141	0	0	59	22	27.1605
SRRM4	0	genome.wustl.edu	37	12	119540084	119540084	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	119540084	119540084	C	A	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	missense	c.175	p.P59T	0.989	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767				69	0	0	21	11	34.375
RNF10	0	genome.wustl.edu	37	12	121014523	121014523	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	121014523	121014523	C	T	SNP	RNF10	ENST00000535470	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNF10	HGNC	ENSG00000022840				142	0	0	48	19	28.3582
KDM2B	0	genome.wustl.edu	37	12	121878620	121878620	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	121878620	121878620	T	C	SNP	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	silent	c.3609	p.P1203	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				74	0	0	35	13	27.0833
KDM2B	0	genome.wustl.edu	37	12	121881856	121881856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	121881856	121881856	G	A	SNP	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	missense	c.2410	p.R804W	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				220	0	0	66	36	35.2941
RHOF	0	genome.wustl.edu	37	12	122217517	122217517	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	122217517	122217517	C	T	SNP	RHOF	ENST00000267205	human	ensembl	74_37	-1	known	missense	c.523	p.A175T	0.996	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOF	HGNC	ENSG00000139725				227	0	0	50	20	28.5714
VPS33A	0	genome.wustl.edu	37	12	122735574	122735574	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	122735574	122735574	A	G	SNP	VPS33A	ENST00000267199	human	ensembl	74_37	-1	known	missense	c.556	p.Y186H	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719				116	0	0	49	20	28.9855
SBNO1	0	genome.wustl.edu	37	12	123793937	123793937	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	123793937	123793937	T	C	SNP	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	missense	c.3550	p.R1184G	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697				151	0	0	107	45	29.6053
FZD10	0	genome.wustl.edu	37	12	130647985	130647985	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	130647985	130647985	G	A	SNP	FZD10	ENST00000539839	human	ensembl	74_37	+1	known	missense	c.400	p.A134T	0.987	NULL	NULL	-	no_errors	FZD10	HGNC	ENSG00000111432				121	0	0	54	19	26.0274
GPR133	0	genome.wustl.edu	37	12	131593316	131593316	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	131593316	131593316	T	C	SNP	GPR133	ENST00000261654	human	ensembl	74_37	+1	known	silent	c.1935	p.S645	0.992	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452				388	0	0	115	53	31.5476
SFSWAP	0	genome.wustl.edu	37	12	132199458	132199458	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	132199458	132199458	G	A	SNP	SFSWAP	ENST00000261674	human	ensembl	74_37	+1	known	silent	c.480	p.P160	0.832	NULL	pfam_SWAP_N_domain,pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	-	no_errors	SFSWAP	HGNC	ENSG00000061936				144	0	0	45	18	28.5714
ULK1	0	genome.wustl.edu	37	12	132400493	132400493	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	132400493	132400493	G	T	SNP	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	missense	c.1667	p.S556I	1.000	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169				96	0	0	24	12	33.3333
EP400	0	genome.wustl.edu	37	12	132528817	132528817	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	132528817	132528817	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.6654	p.A2218	0.970	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				91	0	0	29	12	29.2683
EP400	0	genome.wustl.edu	37	12	132539741	132539741	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	132539741	132539741	T	C	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.7980	p.P2660	0.803	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				12	0	0	5	5	50
ZNF10	0	genome.wustl.edu	37	12	133733304	133733304	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	133733304	133733304	G	A	SNP	ZNF10	ENST00000248211	human	ensembl	74_37	+1	known	missense	c.1472	p.C491Y	0.991	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF10	HGNC	ENSG00000256223				125	0	0	57	32	35.9551
ZNF268	0	genome.wustl.edu	37	12	133768141	133768141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	133768141	133768141	G	A	SNP	ZNF268	ENST00000228289	human	ensembl	74_37	+1	known	missense	c.301	p.A101T	0.376	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF268	HGNC	ENSG00000090612				72	0	0	41	4	8.88889
GUCY2C	0	genome.wustl.edu	37	12	14849285	14849285	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	14849285	14849285	C	A	SNP	GUCY2C	ENST00000261170	human	ensembl	74_37	-1	known	missense	c.98	p.G33V	0.001	superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_A/G_cyclase,superfamily_Peripla_BP_I,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019				64	0	0	36	14	28
IQSEC3	0	genome.wustl.edu	37	12	176562	176562	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	176562	176562	C	A	SNP	IQSEC3	ENST00000326261	human	ensembl	74_37	+1	known	missense	c.514	p.P172T	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC3	HGNC	ENSG00000120645				52	0	0	7	3	30
PLEKHA5	0	genome.wustl.edu	37	12	19498775	19498775	+	Splice_Site	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	19498775	19498775	G	T	SNP	PLEKHA5	ENST00000317589	human	ensembl	74_37	+1	known	splice_site	c.2354-1	e18-1	1.000	-	-	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				60	0	0	42	11	20.7547
SLCO1B7	0	genome.wustl.edu	37	12	21201650	21201650	+	Silent	SNP	C	C	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	21201650	21201650	C	G	SNP	SLCO1B7	ENST00000554957	human	ensembl	74_37	+1	known	silent	c.1140	p.V380	0.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B7	HGNC	ENSG00000205754				10	0	0	3	4	57.1429
LDHB	0	genome.wustl.edu	37	12	21790024	21790024	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	21790024	21790024	G	A	SNP	LDHB	ENST00000350669	human	ensembl	74_37	-1	known	missense	c.818	p.P273L	0.997	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHB	HGNC	ENSG00000111716				137	0	0	61	25	29.0698
SOX5	0	genome.wustl.edu	37	12	23728718	23728718	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	23728718	23728718	T	C	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.1219	p.K407E	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				189	0	0	50	36	41.8605
CASC1	0	genome.wustl.edu	37	12	25297532	25297532	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	25297532	25297532	G	C	SNP	CASC1	ENST00000395987	human	ensembl	74_37	-1	known	missense	c.769	p.R257G	0.010	pfam_Casc1_domain,prints_Casc1	pfam_Casc1_domain,prints_Casc1	-	no_errors	CASC1	HGNC	ENSG00000118307				88	0	0	58	28	32.5581
ERGIC2	0	genome.wustl.edu	37	12	29524548	29524548	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	29524548	29524548	T	C	SNP	ERGIC2	ENST00000360150	human	ensembl	74_37	-1	known	missense	c.19	p.K7E	1.000	NULL	pfam_Erv_C	-	no_errors	ERGIC2	HGNC	ENSG00000087502				72	0	0	21	19	47.5
ENSG00000245482	0	genome.wustl.edu	37	12	34175411	34175411	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	34175411	34175411	G	A	SNP	ENSG00000245482	ENST00000501954	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.323	-	-	-	no_errors	RP11-847H18.2	Clone_based_vega_gene	ENSG00000245482				115	0	0	36	26	41.9355
EFCAB4B	0	genome.wustl.edu	37	12	3788146	3788146	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	3788146	3788146	G	A	SNP	EFCAB4B	ENST00000440314	human	ensembl	74_37	-1	known	silent	c.459	p.G153	0.009	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_EF_hand_dom,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_hand_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFCAB4B	HGNC	ENSG00000130038				182	0	0	55	39	41.4894
KIF21A	0	genome.wustl.edu	37	12	39720137	39720137	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	39720137	39720137	A	T	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	missense	c.3330	p.H1110Q	0.046	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				41	0	0	19	5	20.8333
LRRK2	0	genome.wustl.edu	37	12	40714947	40714947	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	40714947	40714947	C	A	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	silent	c.5127	p.I1709	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				136	0	0	73	42	36.5217
LRRK2	0	genome.wustl.edu	37	12	40748201	40748201	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	40748201	40748201	T	C	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.6677	p.V2226A	0.922	superfamily_WD40_repeat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				67	0	0	40	15	27.2727
PCED1B	0	genome.wustl.edu	37	12	47630062	47630062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	47630062	47630062	C	T	SNP	PCED1B	ENST00000432328	human	ensembl	74_37	+1	known	missense	c.1216	p.R406C	0.000	NULL	NULL	-	no_errors	PCED1B	HGNC	ENSG00000179715				85	0	0	39	19	32.7586
HDAC7	0	genome.wustl.edu	37	12	48185709	48185709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	48185709	48185709	C	T	SNP	HDAC7	ENST00000380610	human	ensembl	74_37	-1	known	missense	c.1808	p.R603H	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC7	HGNC	ENSG00000061273				26	0	0	7	5	41.6667
H1FNT	0	genome.wustl.edu	37	12	48723395	48723395	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	48723395	48723395	G	A	SNP	H1FNT	ENST00000335017	human	ensembl	74_37	+1	known	silent	c.321	p.T107	0.792	NULL	NULL	-	no_errors	H1FNT	HGNC	ENSG00000187166				43	0	0	13	5	27.7778
ANP32D	0	genome.wustl.edu	37	12	48866561	48866561	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	48866561	48866561	A	G	SNP	ANP32D	ENST00000266594	human	ensembl	74_37	+1	known	silent	c.114	p.T38	0.980	NULL	NULL	-	no_errors	ANP32D	HGNC	ENSG00000139223				252	0	0	90	40	30.7692
ADCY6	0	genome.wustl.edu	37	12	49167856	49167856	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	49167856	49167856	C	A	SNP	ADCY6	ENST00000307885	human	ensembl	74_37	-1	known	missense	c.2309	p.R770L	0.003	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY6	HGNC	ENSG00000174233				26	0	0	12	5	29.4118
KMT2D	0	genome.wustl.edu	37	12	49420206	49420206	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	49420206	49420206	C	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	silent	c.15543	p.G5181	0.791	pfam_FYrich_N	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				73	0	0	47	5	9.61538
METTL7A	0	genome.wustl.edu	37	12	51319087	51319087	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	51319087	51319087	C	T	SNP	METTL7A	ENST00000332160	human	ensembl	74_37	+1	known	missense	c.266	p.P89L	1.000	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_SAM-MeTfrase_NodS-related	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel,pfam_SAM-MeTfrase_NodS-related	-	no_errors	METTL7A	HGNC	ENSG00000185432				80	0	0	33	22	40
NR4A1	0	genome.wustl.edu	37	12	52448961	52448961	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	52448961	52448961	A	G	SNP	NR4A1	ENST00000545748	human	ensembl	74_37	+1	known	silent	c.1011	p.T337	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Nuc_orp_HMR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR4A1	HGNC	ENSG00000123358				109	0	0	50	6	10.7143
NR4A1	0	genome.wustl.edu	37	12	52450285	52450285	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	52450285	52450285	A	G	SNP	NR4A1	ENST00000545748	human	ensembl	74_37	+1	known	silent	c.1176	p.R392	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Nuc_orp_HMR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR4A1	HGNC	ENSG00000123358				280	0	0	110	50	31.25
KRT3	0	genome.wustl.edu	37	12	53184633	53184633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	53184633	53184633	G	A	SNP	KRT3	ENST00000309505	human	ensembl	74_37	-1	known	missense	c.1562	p.A521V	0.999	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT3	HGNC	ENSG00000186442				18	0	0	6	4	40
HOXC13	0	genome.wustl.edu	37	12	54333276	54333276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	54333276	54333276	G	A	SNP	HOXC13	ENST00000243056	human	ensembl	74_37	+1	known	missense	c.586	p.G196R	1.000	NULL	pfam_Homeobox_dom,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXC13	HGNC	ENSG00000123364				44	0	0	14	13	48.1481
NFE2	0	genome.wustl.edu	37	12	54686659	54686659	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	54686659	54686659	G	T	SNP	NFE2	ENST00000312156	human	ensembl	74_37	-1	known	silent	c.621	p.P207	0.496	NULL	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2	HGNC	ENSG00000123405				80	0	0	30	16	34.7826
OR6C74	0	genome.wustl.edu	37	12	55641513	55641513	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	55641513	55641513	A	G	SNP	OR6C74	ENST00000343870	human	ensembl	74_37	+1	known	missense	c.442	p.M148V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C74	HGNC	ENSG00000197706				112	0	0	88	34	27.8689
DGKA	0	genome.wustl.edu	37	12	56333951	56333951	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	56333951	56333951	T	C	SNP	DGKA	ENST00000331886	human	ensembl	74_37	+1	known	silent	c.795	p.I265	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKA	HGNC	ENSG00000065357				197	0	0	81	49	37.6923
TIMELESS	0	genome.wustl.edu	37	12	56816646	56816646	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	56816646	56816646	C	A	SNP	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	missense	c.2423	p.G808V	1.000	pfam_TIMELESS_C	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602				176	0	0	47	30	38.961
LRP1	0	genome.wustl.edu	37	12	57571256	57571256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	57571256	57571256	G	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.4243	p.A1415T	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				102	1	0.970874	76	5	6.17284
SHMT2	0	genome.wustl.edu	37	12	57627675	57627675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	57627675	57627675	G	A	SNP	SHMT2	ENST00000328923	human	ensembl	74_37	+1	known	missense	c.1267	p.G423S	1.000	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT2	HGNC	ENSG00000182199				85	0	0	53	16	23.1884
ENSG00000257342	0	genome.wustl.edu	37	12	58114785	58114785	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	58114785	58114785	C	T	SNP	ENSG00000257342	ENST00000549477	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.093	-	-	-	no_errors	RP11-571M6.7	Clone_based_vega_gene	ENSG00000257342				20	0	0	11	6	35.2941
NOP2	0	genome.wustl.edu	37	12	6670152	6670152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	6670152	6670152	C	T	SNP	NOP2	ENST00000322166	human	ensembl	74_37	-1	known	missense	c.1292	p.R431Q	1.000	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,tigrfam_Nop2p	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641				61	0	0	16	6	27.2727
CHD4	0	genome.wustl.edu	37	12	6715477	6715477	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	6715477	6715477	A	G	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	silent	c.63	p.D21	0.998	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				144	0	0	42	9	17.6471
LEPREL2	0	genome.wustl.edu	37	12	6943194	6943194	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	6943194	6943194	T	C	SNP	LEPREL2	ENST00000396725	human	ensembl	74_37	+1	known	missense	c.1436	p.V479A	0.000	smart_Pro_4_hyd_alph	smart_Pro_4_hyd_alph	-	no_errors	LEPREL2	HGNC	ENSG00000110811				123	0	0	81	7	7.95455
ATN1	0	genome.wustl.edu	37	12	7045763	7045763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	7045763	7045763	C	T	SNP	ATN1	ENST00000356654	human	ensembl	74_37	+1	known	missense	c.1333	p.P445S	0.527	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676				533	0	0	237	34	12.5461
EMG1	0	genome.wustl.edu	37	12	7084290	7084290	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	7084290	7084290	G	T	SNP	EMG1	ENST00000261406	human	ensembl	74_37	+1	known	missense	c.448	p.G150C	1.000	pfam_Rbsml_bgen_MeTrfase_EMG1/NEP1	pfam_Rbsml_bgen_MeTrfase_EMG1/NEP1	-	no_errors	EMG1	HGNC	ENSG00000126749				107	0	0	44	27	38.0282
PEX5	0	genome.wustl.edu	37	12	7343037	7343037	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	7343037	7343037	G	A	SNP	PEX5	ENST00000434354	human	ensembl	74_37	+1	known	missense	c.64	p.G22R	0.078	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5	HGNC	ENSG00000139197				124	0	0	42	23	35.3846
C12orf50	0	genome.wustl.edu	37	12	88380180	88380180	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	88380180	88380180	C	T	SNP	C12orf50	ENST00000298699	human	ensembl	74_37	-1	known	silent	c.831	p.Q277	1.000	NULL	NULL	-	no_errors	C12orf50	HGNC	ENSG00000165805				81	0	0	22	18	45
A2M	0	genome.wustl.edu	37	12	9251272	9251272	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	9251272	9251272	G	T	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	silent	c.1782	p.V594	0.934	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				37	0	0	6	4	40
CCDC41	0	genome.wustl.edu	37	12	94761653	94761653	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	94761653	94761653	T	A	SNP	CCDC41	ENST00000339839	human	ensembl	74_37	-1	known	missense	c.1260	p.Q420H	0.821	NULL	NULL	-	no_errors	CCDC41	HGNC	ENSG00000173588				166	0	0	70	30	30
ANKS1B	0	genome.wustl.edu	37	12	99640299	99640299	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	99640299	99640299	G	T	SNP	ANKS1B	ENST00000329257	human	ensembl	74_37	-1	known	missense	c.2100	p.D700E	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046				106	0	0	38	28	42.4242
COL4A1	0	genome.wustl.edu	37	13	110804758	110804758	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	110804758	110804758	G	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	silent	c.4851	p.H1617	0.990	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				61	0	0	35	18	33.9623
COL4A1	0	genome.wustl.edu	37	13	110833685	110833685	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	110833685	110833685	G	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.2147	p.P716L	0.936	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				64	0	0	42	6	12.5
COL4A1	0	genome.wustl.edu	37	13	110857865	110857865	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	110857865	110857865	A	G	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	silent	c.879	p.G293	0.932	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				330	0	0	104	57	35.4037
MCF2L	0	genome.wustl.edu	37	13	113736828	113736828	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	113736828	113736828	A	G	SNP	MCF2L	ENST00000375604	human	ensembl	74_37	+1	known	missense	c.2134	p.M712V	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217				59	0	0	24	9	27.2727
TFDP1	0	genome.wustl.edu	37	13	114292142	114292142	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	114292142	114292142	A	G	SNP	TFDP1	ENST00000375370	human	ensembl	74_37	+1	known	missense	c.1016	p.Q339R	1.000	pfam_Transc_factor_DP_C,pirsf_Transcrpt_fac_DP	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcrpt_fac_DP	-	no_errors	TFDP1	HGNC	ENSG00000198176				158	0	0	66	20	23.2558
CDC16	0	genome.wustl.edu	37	13	115012445	115012445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	115012445	115012445	G	A	SNP	CDC16	ENST00000356221	human	ensembl	74_37	+1	known	missense	c.937	p.G313S	1.000	pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC16	HGNC	ENSG00000130177				99	0	0	54	25	31.6456
IL17D	0	genome.wustl.edu	37	13	21295832	21295832	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	21295832	21295832	C	T	SNP	IL17D	ENST00000304920	human	ensembl	74_37	+1	known	silent	c.348	p.C116	1.000	pfam_IL-17_fam,prints_IL-17_chr	pfam_IL-17_fam,prints_IL-17_chr	-	no_errors	IL17D	HGNC	ENSG00000172458				80	0	0	25	14	35.8974
LATS2	0	genome.wustl.edu	37	13	21563416	21563416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	21563416	21563416	G	A	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.503	p.T168M	0.010	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				144	0	0	39	19	32.7586
FGF9	0	genome.wustl.edu	37	13	22246259	22246259	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	22246259	22246259	A	G	SNP	FGF9	ENST00000382353	human	ensembl	74_37	+1	known	missense	c.208	p.T70A	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF9	HGNC	ENSG00000102678				168	0	0	55	23	29.4872
SACS	0	genome.wustl.edu	37	13	23904309	23904309	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	23904309	23904309	A	G	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.13706	p.I4569T	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				66	0	0	58	23	28.3951
AMER2	0	genome.wustl.edu	37	13	25744572	25744572	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	25744572	25744572	A	G	SNP	AMER2	ENST00000515384	human	ensembl	74_37	-1	known	missense	c.1186	p.C396R	0.994	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER2	HGNC	ENSG00000165566				88	0	0	30	13	30.2326
AMER2	0	genome.wustl.edu	37	13	25745359	25745359	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	25745359	25745359	G	A	SNP	AMER2	ENST00000515384	human	ensembl	74_37	-1	known	silent	c.399	p.G133	0.973	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER2	HGNC	ENSG00000165566				13	0	0	6	3	33.3333
AMER2	0	genome.wustl.edu	37	13	25745594	25745594	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	25745594	25745594	G	T	SNP	AMER2	ENST00000515384	human	ensembl	74_37	-1	known	missense	c.164	p.A55D	1.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER2	HGNC	ENSG00000165566				73	0	0	19	12	38.7097
AMER2	0	genome.wustl.edu	37	13	25745681	25745681	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	25745681	25745681	C	T	SNP	AMER2	ENST00000515384	human	ensembl	74_37	-1	known	missense	c.77	p.C26Y	1.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER2	HGNC	ENSG00000165566				28	0	0	16	5	23.8095
GSX1	0	genome.wustl.edu	37	13	28367833	28367833	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	28367833	28367833	G	A	SNP	GSX1	ENST00000302945	human	ensembl	74_37	+1	known	silent	c.543	p.A181	0.931	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GSX1	HGNC	ENSG00000169840				175	0	0	72	8	10
SLC7A1	0	genome.wustl.edu	37	13	30104719	30104719	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	30104719	30104719	C	T	SNP	SLC7A1	ENST00000380752	human	ensembl	74_37	-1	known	silent	c.660	p.T220	0.006	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A1	HGNC	ENSG00000139514				325	0	0	92	51	35.6643
DCLK1	0	genome.wustl.edu	37	13	36699971	36699971	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	36699971	36699971	G	A	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.304	p.P102S	1.000	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				123	1	0.806452	46	19	29.2308
ALG5	0	genome.wustl.edu	37	13	37524043	37524043	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	37524043	37524043	T	C	SNP	ALG5	ENST00000486410	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.041	-	-	-	no_errors	ALG5	HGNC	ENSG00000120697				57	0	0	27	16	37.2093
TRPC4	0	genome.wustl.edu	37	13	38357091	38357091	+	Splice_Site	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	38357091	38357091	A	G	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	splice_site	c.378+2	e1+2	1.000	-	-	-	no_errors	TRPC4	HGNC	ENSG00000133107				76	0	0	52	13	20
ELF1	0	genome.wustl.edu	37	13	41556143	41556143	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	41556143	41556143	A	G	SNP	ELF1	ENST00000239882	human	ensembl	74_37	-1	known	silent	c.48	p.S16	1.000	pfam_TF_Elf_N	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF1	HGNC	ENSG00000120690				149	0	0	77	7	8.33333
RCBTB2	0	genome.wustl.edu	37	13	49084763	49084763	+	Splice_Site	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	49084763	49084763	A	G	SNP	RCBTB2	ENST00000430805	human	ensembl	74_37	-1	known	splice_site	c.941+2	e7+2	1.000	-	-	-	no_errors	RCBTB2	HGNC	ENSG00000136161				158	0	0	74	38	33.9286
FNDC3A	0	genome.wustl.edu	37	13	49771028	49771028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	49771028	49771028	G	A	SNP	FNDC3A	ENST00000492622	human	ensembl	74_37	+1	known	missense	c.2242	p.E748K	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531				81	0	0	29	14	32.5581
FAM124A	0	genome.wustl.edu	37	13	51826207	51826207	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	51826207	51826207	A	G	SNP	FAM124A	ENST00000280057	human	ensembl	74_37	+1	known	missense	c.812	p.D271G	1.000	NULL	NULL	-	no_errors	FAM124A	HGNC	ENSG00000150510				131	0	0	64	9	12.3288
PCDH20	0	genome.wustl.edu	37	13	61987108	61987108	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	61987108	61987108	T	C	SNP	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	missense	c.1124	p.E375G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991				196	0	0	110	54	32.9268
LOC101927016	0	genome.wustl.edu	37	13	64321091	64321091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	64321091	64321091	G	A	SNP	LOC101927016	ENST00000453638	human	ensembl	74_37	+1	known	missense	c.158	p.G53D	0.725	NULL	NULL	-	no_errors	AL445989.1	Clone_based_ensembl_gene	ENSG00000226974				63	0	0	25	15	37.5
EDNRB	0	genome.wustl.edu	37	13	78492668	78492668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	78492668	78492668	G	A	SNP	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	missense	c.41	p.A14V	0.993	prints_ETB_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				54	0	0	28	9	24.3243
GPC6	0	genome.wustl.edu	37	13	94197638	94197638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	94197638	94197638	C	T	SNP	GPC6	ENST00000377047	human	ensembl	74_37	+1	known	missense	c.283	p.R95C	0.995	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098				199	0	0	102	52	33.7662
TGDS	0	genome.wustl.edu	37	13	95235385	95235385	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	95235385	95235385	A	G	SNP	TGDS	ENST00000261296	human	ensembl	74_37	-1	known	missense	c.419	p.V140A	0.998	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_Male_sterile_NAD-bd	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_Male_sterile_NAD-bd	-	no_errors	TGDS	HGNC	ENSG00000088451				117	0	0	56	24	30
HS6ST3	0	genome.wustl.edu	37	13	96743228	96743228	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	96743228	96743228	G	A	SNP	HS6ST3	ENST00000376705	human	ensembl	74_37	+1	known	missense	c.112	p.G38R	1.000	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST3	HGNC	ENSG00000185352				61	0	0	17	8	32
HS6ST3	0	genome.wustl.edu	37	13	97485036	97485036	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	97485036	97485036	A	C	SNP	HS6ST3	ENST00000376705	human	ensembl	74_37	+1	known	missense	c.1000	p.N334H	0.995	pfam_Sulfotransferase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST3	HGNC	ENSG00000185352				156	0	0	62	33	34.7368
GPR18	0	genome.wustl.edu	37	13	99907196	99907196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	99907196	99907196	G	A	SNP	GPR18	ENST00000340807	human	ensembl	74_37	-1	known	missense	c.931	p.R311C	1.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR18	HGNC	ENSG00000125245				147	0	0	74	40	35.0877
DEGS2	0	genome.wustl.edu	37	14	100615982	100615982	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	100615982	100615982	G	A	SNP	DEGS2	ENST00000305631	human	ensembl	74_37	-1	known	silent	c.148	p.L50	0.070	pirsf_Sphingolipid_d4-desaturase	pfam_Fatty_acid_desaturase-1,pfam_Sphingolipid_d4-desaturase_N,pirsf_Sphingolipid_d4-desaturase	-	no_errors	DEGS2	HGNC	ENSG00000168350				53	0	0	9	6	40
SLC25A29	0	genome.wustl.edu	37	14	100759713	100759713	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	100759713	100759713	A	G	SNP	SLC25A29	ENST00000359232	human	ensembl	74_37	-1	known	missense	c.80	p.V27A	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A29	HGNC	ENSG00000197119				28	0	0	25	5	16.6667
DLK1	0	genome.wustl.edu	37	14	101193431	101193431	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	101193431	101193431	G	A	SNP	DLK1	ENST00000341267	human	ensembl	74_37	+1	known	missense	c.26	p.R9H	0.975	NULL	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DLK1	HGNC	ENSG00000185559				49	0	0	14	7	33.3333
MIR382	0	genome.wustl.edu	37	14	101520692	101520692	+	RNA	SNP	C	C	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	101520692	101520692	C	G	SNP	MIR382	ENST00000385009	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR382	HGNC	ENSG00000207742				34	0	0	19	9	32.1429
MIR485	0	genome.wustl.edu	37	14	101521786	101521786	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	101521786	101521786	G	A	SNP	MIR485	ENST00000385292	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR485	HGNC	ENSG00000208027				111	0	0	53	22	29.3333
MIR485	0	genome.wustl.edu	37	14	101521804	101521804	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	101521804	101521804	A	G	SNP	MIR485	ENST00000385292	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR485	HGNC	ENSG00000208027				101	0	0	38	22	36.6667
DYNC1H1	0	genome.wustl.edu	37	14	102515817	102515817	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	102515817	102515817	C	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	silent	c.13413	p.A4471	0.115	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				88	0	0	40	16	28.5714
AHNAK2	0	genome.wustl.edu	37	14	105407107	105407107	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	105407107	105407107	G	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.14681	p.S4894Y	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				92	0	0	38	30	44.1176
AHNAK2	0	genome.wustl.edu	37	14	105410777	105410777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	105410777	105410777	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.11011	p.D3671N	0.731	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				347	0	0	169	90	34.749
AHNAK2	0	genome.wustl.edu	37	14	105415855	105415855	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	105415855	105415855	T	C	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.5933	p.D1978G	0.154	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				515	0	0	198	118	37.3418
POTEG	0	genome.wustl.edu	37	14	19553817	19553817	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	19553817	19553817	A	G	SNP	POTEG	ENST00000409832	human	ensembl	74_37	+1	known	missense	c.401	p.H134R	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEG	HGNC	ENSG00000222036				505	0	0	251	24	8.72727
OR4N5	0	genome.wustl.edu	37	14	20612024	20612024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	20612024	20612024	C	T	SNP	OR4N5	ENST00000333629	human	ensembl	74_37	+1	known	missense	c.130	p.L44F	0.001	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4N5	HGNC	ENSG00000184394				434	0	0	230	121	34.4729
TOX4	0	genome.wustl.edu	37	14	21957487	21957487	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	21957487	21957487	T	C	SNP	TOX4	ENST00000262709	human	ensembl	74_37	+1	known	silent	c.735	p.N245	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX4	HGNC	ENSG00000092203				345	0	0	120	48	28.5714
TOX4	0	genome.wustl.edu	37	14	21957499	21957499	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	21957499	21957499	T	C	SNP	TOX4	ENST00000262709	human	ensembl	74_37	+1	known	silent	c.747	p.T249	0.995	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX4	HGNC	ENSG00000092203				326	0	0	144	10	6.49351
DCAF11	0	genome.wustl.edu	37	14	24586179	24586179	+	Splice_Site	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	24586179	24586179	A	G	SNP	DCAF11	ENST00000396941	human	ensembl	74_37	+1	known	splice_site	c.133-2	e2-2	1.000	-	-	-	no_errors	DCAF11	HGNC	ENSG00000100897				190	0	0	57	37	39.3617
IRF9	0	genome.wustl.edu	37	14	24631403	24631403	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	24631403	24631403	T	C	SNP	IRF9	ENST00000396864	human	ensembl	74_37	+1	known	missense	c.50	p.V17A	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928				232	0	0	83	34	29.0598
NOP9	0	genome.wustl.edu	37	14	24771314	24771314	+	Splice_Site	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	24771314	24771314	T	C	SNP	NOP9	ENST00000267425	human	ensembl	74_37	+1	known	splice_site	c.950+2	e4+2	0.997	-	-	-	no_errors	NOP9	HGNC	ENSG00000196943				170	0	0	134	60	30.9278
CBLN3	0	genome.wustl.edu	37	14	24897157	24897157	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	24897157	24897157	T	C	SNP	CBLN3	ENST00000267406	human	ensembl	74_37	-1	known	silent	c.456	p.S152	0.980	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN3	HGNC	ENSG00000139899				81	0	0	63	15	19.2308
KHNYN	0	genome.wustl.edu	37	14	24905387	24905387	+	Splice_Site	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	24905387	24905387	T	C	SNP	KHNYN	ENST00000251343	human	ensembl	74_37	+1	known	splice_site	c.1685+2	e5+2	1.000	-	-	-	no_errors	KHNYN	HGNC	ENSG00000100441				85	0	0	31	16	34.0426
TTC6	0	genome.wustl.edu	37	14	38296474	38296474	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	38296474	38296474	T	C	SNP	TTC6	ENST00000478811	human	ensembl	74_37	+1	known	missense	c.1394	p.M465T	1.000	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC6	HGNC	ENSG00000139865				199	0	0	124	12	8.82353
SEC23A	0	genome.wustl.edu	37	14	39556131	39556131	+	Splice_Site	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	39556131	39556131	A	G	SNP	SEC23A	ENST00000307712	human	ensembl	74_37	-1	known	splice_site	c.683+2	e5+2	1.000	-	-	-	no_errors	SEC23A	HGNC	ENSG00000100934				82	0	0	25	10	28.5714
LRFN5	0	genome.wustl.edu	37	14	42356881	42356881	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	42356881	42356881	T	A	SNP	LRFN5	ENST00000298119	human	ensembl	74_37	+1	known	missense	c.1053	p.D351E	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN5	HGNC	ENSG00000165379				142	0	0	78	47	37.6
MIS18BP1	0	genome.wustl.edu	37	14	45697006	45697006	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	45697006	45697006	T	C	SNP	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	missense	c.1606	p.N536D	0.000	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				97	0	0	69	22	24.1758
NEMF	0	genome.wustl.edu	37	14	50269385	50269385	+	Splice_Site	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	50269385	50269385	A	G	SNP	NEMF	ENST00000298310	human	ensembl	74_37	-1	known	splice_site	c.1974+2	e21+2	1.000	-	-	-	no_errors	NEMF	HGNC	ENSG00000165525				90	0	0	55	17	23.6111
ABHD12B	0	genome.wustl.edu	37	14	51370784	51370784	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	51370784	51370784	G	A	SNP	ABHD12B	ENST00000553715	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ABHD12B	HGNC	ENSG00000131969				217	0	0	84	51	37.7778
PTGDR	0	genome.wustl.edu	37	14	52735271	52735271	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	52735271	52735271	C	T	SNP	PTGDR	ENST00000306051	human	ensembl	74_37	+1	known	missense	c.739	p.R247C	0.029	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt,prints_Prostanoid_rcpt	-	no_errors	PTGDR	HGNC	ENSG00000168229				154	0	0	80	42	34.4262
DLGAP5	0	genome.wustl.edu	37	14	55643915	55643915	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	55643915	55643915	T	C	SNP	DLGAP5	ENST00000247191	human	ensembl	74_37	-1	known	missense	c.914	p.N305S	0.013	NULL	pfam_GKAP	-	no_errors	DLGAP5	HGNC	ENSG00000126787				64	0	0	64	4	5.88235
AP5M1	0	genome.wustl.edu	37	14	57741070	57741070	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	57741070	57741070	A	G	SNP	AP5M1	ENST00000261558	human	ensembl	74_37	+1	known	silent	c.183	p.L61	0.856	NULL	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pfscan_Clathrin_mu_C	-	no_errors	AP5M1	HGNC	ENSG00000053770				85	0	0	67	27	28.7234
DAAM1	0	genome.wustl.edu	37	14	59798558	59798558	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	59798558	59798558	G	A	SNP	DAAM1	ENST00000351081	human	ensembl	74_37	+1	known	missense	c.1888	p.E630K	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DAAM1	HGNC	ENSG00000100592				348	0	0	138	61	30.6533
PCNXL4	0	genome.wustl.edu	37	14	60581848	60581848	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	60581848	60581848	T	C	SNP	PCNXL4	ENST00000404681	human	ensembl	74_37	+1	known	silent	c.1026	p.D342	0.021	NULL	pfam_Pecanex	-	no_errors	PCNXL4	HGNC	ENSG00000126773				138	0	0	52	35	40.2299
SLC38A6	0	genome.wustl.edu	37	14	61518547	61518547	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	61518547	61518547	T	C	SNP	SLC38A6	ENST00000354886	human	ensembl	74_37	+1	known	missense	c.1093	p.F365L	0.996	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A6	HGNC	ENSG00000139974				100	0	0	45	26	36.6197
RHOJ	0	genome.wustl.edu	37	14	63757612	63757612	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	63757612	63757612	A	G	SNP	RHOJ	ENST00000316754	human	ensembl	74_37	+1	known	missense	c.515	p.Y172C	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOJ	HGNC	ENSG00000126785				108	0	0	75	10	11.7647
SYNE2	0	genome.wustl.edu	37	14	64491108	64491108	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	64491108	64491108	T	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	nonsense	c.5771	p.L1924*	0.922	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				141	0	0	43	25	36.7647
SPTB	0	genome.wustl.edu	37	14	65260496	65260496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	65260496	65260496	G	A	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	missense	c.1885	p.R629W	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182				111	0	0	46	16	25.8065
SPTB	0	genome.wustl.edu	37	14	65262178	65262178	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	65262178	65262178	C	T	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	silent	c.1521	p.L507	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182				129	0	0	54	24	30.7692
SIPA1L1	0	genome.wustl.edu	37	14	72128176	72128176	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	72128176	72128176	C	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	silent	c.2247	p.V749	0.999	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				72	0	0	27	24	47.0588
ELMSAN1	0	genome.wustl.edu	37	14	74206625	74206625	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	74206625	74206625	G	T	SNP	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	silent	c.87	p.P29	0.123	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				146	0	0	49	8	14.0351
RPS6KL1	0	genome.wustl.edu	37	14	75388063	75388063	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	75388063	75388063	A	G	SNP	RPS6KL1	ENST00000358328	human	ensembl	74_37	-1	known	missense	c.182	p.L61P	1.000	pfam_MIT,smart_MIT	pfam_Prot_kinase_dom,pfam_MIT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KL1	HGNC	ENSG00000198208				172	0	0	63	15	19.2308
TTLL5	0	genome.wustl.edu	37	14	76238159	76238159	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	76238159	76238159	T	C	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	missense	c.2098	p.F700L	0.386	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				161	0	0	108	38	26.0274
KIAA1737	0	genome.wustl.edu	37	14	77572054	77572054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	77572054	77572054	G	A	SNP	KIAA1737	ENST00000361786	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	KIAA1737	HGNC	ENSG00000198894				197	0	0	52	28	35
SAMD15	0	genome.wustl.edu	37	14	77844056	77844056	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	77844056	77844056	A	G	SNP	SAMD15	ENST00000216471	human	ensembl	74_37	+1	known	missense	c.295	p.T99A	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD15	HGNC	ENSG00000100583				338	0	0	120	27	18.3673
SAMD15	0	genome.wustl.edu	37	14	77844361	77844361	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	77844361	77844361	A	G	SNP	SAMD15	ENST00000216471	human	ensembl	74_37	+1	known	silent	c.600	p.Q200	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD15	HGNC	ENSG00000100583				187	0	0	72	20	21.7391
NRXN3	0	genome.wustl.edu	37	14	79434538	79434538	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	79434538	79434538	G	A	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	silent	c.2958	p.L986	0.974	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				119	0	0	68	6	8.10811
KCNK10	0	genome.wustl.edu	37	14	88652430	88652430	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	88652430	88652430	G	A	SNP	KCNK10	ENST00000312350	human	ensembl	74_37	-1	known	nonsense	c.1081	p.R361*	1.000	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK10	HGNC	ENSG00000100433				64	0	0	18	7	28
TDP1	0	genome.wustl.edu	37	14	90450954	90450954	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	90450954	90450954	T	C	SNP	TDP1	ENST00000335725	human	ensembl	74_37	+1	known	silent	c.979	p.L327	0.989	pfam_Tyr-DNA_phospho	pfam_Tyr-DNA_phospho	-	no_errors	TDP1	HGNC	ENSG00000042088				220	0	0	109	69	38.764
CATSPERB	0	genome.wustl.edu	37	14	92126195	92126195	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	92126195	92126195	T	C	SNP	CATSPERB	ENST00000256343	human	ensembl	74_37	-1	known	missense	c.1418	p.Y473C	0.511	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	CATSPERB	HGNC	ENSG00000133962				70	0	0	61	29	32.2222
UNC79	0	genome.wustl.edu	37	14	94063774	94063774	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	94063774	94063774	A	G	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.3260	p.Y1087C	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				153	1	0.649351	78	18	18.75
ATG2B	0	genome.wustl.edu	37	14	96794867	96794867	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	96794867	96794867	A	G	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	silent	c.1980	p.N660	0.972	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739				70	0	0	43	6	12.2449
CERS3	0	genome.wustl.edu	37	15	101041961	101041961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	101041961	101041961	C	T	SNP	CERS3	ENST00000284382	human	ensembl	74_37	-1	known	missense	c.94	p.V32I	0.149	pirsf_Longevity_assurance_LAG1_LAC1	pirsf_Longevity_assurance_LAG1_LAC1,pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_TLC-dom,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS3	HGNC	ENSG00000154227				126	0	0	61	31	33.6957
HERC2P3	0	genome.wustl.edu	37	15	20645813	20645813	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	20645813	20645813	T	C	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				67	0	0	30	4	11.7647
MAGEL2	0	genome.wustl.edu	37	15	23891069	23891069	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	23891069	23891069	C	A	SNP	MAGEL2	ENST00000532292	human	ensembl	74_37	-1	known	missense	c.12	p.Q4H	1.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585				10	0	0	7	4	36.3636
NPAP1	0	genome.wustl.edu	37	15	24923624	24923624	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	24923624	24923624	A	G	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	silent	c.2610	p.Q870	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				178	1	0.558659	78	41	34.4538
GABRB3	0	genome.wustl.edu	37	15	26806130	26806130	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	26806130	26806130	T	C	SNP	GABRB3	ENST00000299267	human	ensembl	74_37	-1	known	silent	c.1029	p.A343	0.269	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB3	HGNC	ENSG00000166206				239	0	0	100	58	36.7089
HERC2	0	genome.wustl.edu	37	15	28408274	28408274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	28408274	28408274	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.10712	p.A3571V	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				153	0	0	46	25	35.2113
HERC2	0	genome.wustl.edu	37	15	28460840	28460840	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	28460840	28460840	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.6137	p.P2046L	0.999	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				52	0	0	20	7	25.9259
APBA2	0	genome.wustl.edu	37	15	29368282	29368282	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	29368282	29368282	A	G	SNP	APBA2	ENST00000558259	human	ensembl	74_37	+1	known	missense	c.1057	p.S353G	1.000	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA2	HGNC	ENSG00000034053				199	0	0	78	38	32.7586
APBA2	0	genome.wustl.edu	37	15	29385292	29385292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	29385292	29385292	G	A	SNP	APBA2	ENST00000558259	human	ensembl	74_37	+1	known	missense	c.1084	p.E362K	1.000	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA2	HGNC	ENSG00000034053				131	1	0.757576	54	20	27.027
ARHGAP11B	0	genome.wustl.edu	37	15	30919028	30919028	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	30919028	30919028	G	A	SNP	ARHGAP11B	ENST00000428041	human	ensembl	74_37	+1	known	nonsense	c.5	p.W2*	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11B	HGNC	ENSG00000187951				113	1	0.877193	27	15	35.7143
ZNF770	0	genome.wustl.edu	37	15	35274313	35274313	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	35274313	35274313	T	C	SNP	ZNF770	ENST00000356321	human	ensembl	74_37	-1	known	silent	c.1323	p.S441	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF770	HGNC	ENSG00000198146				158	0	0	101	6	5.60748
CHAC1	0	genome.wustl.edu	37	15	41245679	41245679	+	Silent	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	41245679	41245679	A	T	SNP	CHAC1	ENST00000446533	human	ensembl	74_37	+1	known	silent	c.24	p.L8	0.002	NULL	pfam_ChaC	-	no_errors	CHAC1	HGNC	ENSG00000128965				9	0	0	6	4	40
RTF1	0	genome.wustl.edu	37	15	41762573	41762573	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	41762573	41762573	G	A	SNP	RTF1	ENST00000389629	human	ensembl	74_37	+1	known	silent	c.1008	p.S336	0.022	NULL	pfam_Plus-3,smart_Plus3-dom_subgr	-	no_errors	RTF1	HGNC	ENSG00000137815				563	1	0.177305	204	109	34.8243
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42138435	42138435	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	42138435	42138435	A	G	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	silent	c.2328	p.E776	0.057	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				262	0	0	99	6	5.71429
TUBGCP4	0	genome.wustl.edu	37	15	43678008	43678008	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	43678008	43678008	A	G	SNP	TUBGCP4	ENST00000260383	human	ensembl	74_37	+1	known	missense	c.743	p.N248S	1.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP4	HGNC	ENSG00000137822				73	0	0	34	27	44.2623
MAP1A	0	genome.wustl.edu	37	15	43821953	43821953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	43821953	43821953	G	A	SNP	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	missense	c.8141	p.R2714Q	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				169	0	0	65	35	35
PDIA3	0	genome.wustl.edu	37	15	44048950	44048950	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	44048950	44048950	G	T	SNP	PDIA3	ENST00000300289	human	ensembl	74_37	+1	known	missense	c.350	p.G117V	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA3	HGNC	ENSG00000167004				188	0	0	74	51	40.8
ELL3	0	genome.wustl.edu	37	15	44066518	44066518	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	44066518	44066518	T	C	SNP	ELL3	ENST00000319359	human	ensembl	74_37	-1	known	silent	c.900	p.Q300	0.977	pfam_Occludin_RNApol2_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL3	HGNC	ENSG00000128886				140	0	0	50	36	41.8605
MYEF2	0	genome.wustl.edu	37	15	48441449	48441449	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	48441449	48441449	C	T	SNP	MYEF2	ENST00000324324	human	ensembl	74_37	-1	known	missense	c.1498	p.D500N	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MYEF2	HGNC	ENSG00000104177				189	0	0	97	7	6.73077
SLC12A1	0	genome.wustl.edu	37	15	48533725	48533725	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	48533725	48533725	C	A	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	missense	c.1229	p.A410D	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				347	0	0	131	45	25.5682
SECISBP2L	0	genome.wustl.edu	37	15	49329874	49329874	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	49329874	49329874	A	G	SNP	SECISBP2L	ENST00000559471	human	ensembl	74_37	-1	known	silent	c.117	p.N39	0.742	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593				81	0	0	44	13	22.807
COPS2	0	genome.wustl.edu	37	15	49421690	49421690	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	49421690	49421690	A	G	SNP	COPS2	ENST00000299259	human	ensembl	74_37	-1	known	missense	c.1133	p.I378T	1.000	pfam_PCI_dom,smart_PCI_dom	pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	COPS2	HGNC	ENSG00000166200				20	0	0	5	2	28.5714
TRPM7	0	genome.wustl.edu	37	15	50884706	50884706	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	50884706	50884706	C	T	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	silent	c.3726	p.T1242	0.941	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				255	0	0	117	61	34.2697
AP4E1	0	genome.wustl.edu	37	15	51242094	51242094	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	51242094	51242094	A	G	SNP	AP4E1	ENST00000261842	human	ensembl	74_37	+1	known	missense	c.1388	p.H463R	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_bsu_C,superfamily_ARM-type_fold,pirsf_AP4_complex_esu	-	no_errors	AP4E1	HGNC	ENSG00000081014				154	0	0	74	27	26.7327
MYO5A	0	genome.wustl.edu	37	15	52643603	52643603	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	52643603	52643603	T	C	SNP	MYO5A	ENST00000358212	human	ensembl	74_37	-1	known	missense	c.3697	p.S1233G	0.120	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535				288	0	0	93	37	28.4615
MYO5A	0	genome.wustl.edu	37	15	52688528	52688528	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	52688528	52688528	C	T	SNP	MYO5A	ENST00000358212	human	ensembl	74_37	-1	known	silent	c.1386	p.Q462	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535				23	0	0	8	3	27.2727
HERC1	0	genome.wustl.edu	37	15	64056318	64056318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	64056318	64056318	C	T	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.1003	p.A335T	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				31	0	0	9	4	30.7692
DENND4A	0	genome.wustl.edu	37	15	65968867	65968867	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	65968867	65968867	A	C	SNP	DENND4A	ENST00000443035	human	ensembl	74_37	-1	known	missense	c.4282	p.S1428A	0.990	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485				68	0	0	23	13	36.1111
THSD4	0	genome.wustl.edu	37	15	72040765	72040765	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	72040765	72040765	G	T	SNP	THSD4	ENST00000261862	human	ensembl	74_37	+1	known	silent	c.2247	p.S749	0.063	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720				110	0	0	24	12	33.3333
STRA6	0	genome.wustl.edu	37	15	74472335	74472335	+	RNA	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	74472335	74472335	C	A	SNP	STRA6	ENST00000574439	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	STRA6	HGNC	ENSG00000137868				62	0	0	15	10	40
CLK3	0	genome.wustl.edu	37	15	74914516	74914516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	74914516	74914516	G	A	SNP	CLK3	ENST00000395066	human	ensembl	74_37	+1	known	missense	c.869	p.G290D	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK3	HGNC	ENSG00000179335				89	0	0	49	5	9.25926
CYP1A2	0	genome.wustl.edu	37	15	75047347	75047347	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	75047347	75047347	A	G	SNP	CYP1A2	ENST00000343932	human	ensembl	74_37	+1	known	missense	c.1469	p.D490G	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A2	HGNC	ENSG00000140505				126	0	0	70	7	9.09091
COMMD4	0	genome.wustl.edu	37	15	75632127	75632127	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	75632127	75632127	A	G	SNP	COMMD4	ENST00000267935	human	ensembl	74_37	+1	known	missense	c.467	p.H156R	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD4	HGNC	ENSG00000140365				80	0	0	38	12	24
CRABP1	0	genome.wustl.edu	37	15	78633418	78633418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	78633418	78633418	C	T	SNP	CRABP1	ENST00000299529	human	ensembl	74_37	+1	known	missense	c.104	p.A35V	0.999	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	CRABP1	HGNC	ENSG00000166426				44	0	0	9	11	55
IREB2	0	genome.wustl.edu	37	15	78757619	78757619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	78757619	78757619	C	T	SNP	IREB2	ENST00000258886	human	ensembl	74_37	+1	known	missense	c.299	p.A100V	1.000	pfam_Acoase/IPM_deHydtase_lsu_aba,superfamily_Acoase/IPM_deHydtase_lsu_aba	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase/Fe_reg_prot_2	-	no_errors	IREB2	HGNC	ENSG00000136381				81	0	0	48	20	29.4118
CHRNA3	0	genome.wustl.edu	37	15	78909418	78909418	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	78909418	78909418	T	C	SNP	CHRNA3	ENST00000326828	human	ensembl	74_37	-1	known	missense	c.325	p.M109V	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA3	HGNC	ENSG00000080644				45	0	0	18	12	40
RASGRF1	0	genome.wustl.edu	37	15	79296391	79296391	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	79296391	79296391	T	C	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	silent	c.2250	p.S750	0.002	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				139	0	0	61	5	7.57576
ARNT2	0	genome.wustl.edu	37	15	80806735	80806735	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	80806735	80806735	G	T	SNP	ARNT2	ENST00000303329	human	ensembl	74_37	+1	known	missense	c.866	p.W289L	1.000	superfamily_PAS,prints_Nuc_translocat	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT2	HGNC	ENSG00000172379				252	0	0	86	52	37.6812
KIAA1199	0	genome.wustl.edu	37	15	81235401	81235401	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	81235401	81235401	T	C	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.3815	p.I1272T	0.855	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				642	0	0	282	74	20.7865
IL16	0	genome.wustl.edu	37	15	81598480	81598480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	81598480	81598480	G	A	SNP	IL16	ENST00000302987	human	ensembl	74_37	+1	known	missense	c.3652	p.A1218T	0.017	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_IL-16	-	no_errors	IL16	HGNC	ENSG00000172349				215	1	0.462963	73	42	36.5217
MEX3B	0	genome.wustl.edu	37	15	82336953	82336953	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	82336953	82336953	A	G	SNP	MEX3B	ENST00000329713	human	ensembl	74_37	-1	known	silent	c.258	p.G86	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3B	HGNC	ENSG00000183496				70	0	0	25	15	37.5
EFTUD1	0	genome.wustl.edu	37	15	82444259	82444259	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	82444259	82444259	A	G	SNP	EFTUD1	ENST00000268206	human	ensembl	74_37	-1	known	missense	c.2536	p.S846P	1.000	superfamily_Ribosomal_S5_D2-typ_fold	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_EFG_III-V,superfamily_Transl_B-barrel,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598				51	0	0	58	7	10.7692
ADAMTSL3	0	genome.wustl.edu	37	15	84442355	84442355	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	84442355	84442355	C	A	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	silent	c.270	p.T90	0.998	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218				90	0	0	21	13	38.2353
ADAMTSL3	0	genome.wustl.edu	37	15	84651224	84651224	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	84651224	84651224	G	A	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	silent	c.2844	p.K948	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218				197	0	0	65	38	36.8932
ZNF592	0	genome.wustl.edu	37	15	85341570	85341570	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	85341570	85341570	A	C	SNP	ZNF592	ENST00000299927	human	ensembl	74_37	+1	known	missense	c.2601	p.E867D	0.990	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716				150	0	0	66	31	31.9588
RLBP1	0	genome.wustl.edu	37	15	89760476	89760476	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	89760476	89760476	G	A	SNP	RLBP1	ENST00000268125	human	ensembl	74_37	-1	known	missense	c.221	p.A74V	1.000	pfam_CRAL/TRIO_N_dom,superfamily_CRAL/TRIO_N_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran,pfscan_CRAL-TRIO_dom	-	no_errors	RLBP1	HGNC	ENSG00000140522				153	0	0	47	24	33.8028
GDPGP1	0	genome.wustl.edu	37	15	90785027	90785027	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	90785027	90785027	C	T	SNP	GDPGP1	ENST00000329600	human	ensembl	74_37	+1	known	missense	c.887	p.P296L	0.763	NULL	NULL	-	no_errors	GDPGP1	HGNC	ENSG00000183208				148	0	0	66	32	32.6531
FURIN	0	genome.wustl.edu	37	15	91422045	91422045	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	91422045	91422045	C	T	SNP	FURIN	ENST00000268171	human	ensembl	74_37	+1	known	missense	c.892	p.R298W	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	FURIN	HGNC	ENSG00000140564				115	0	0	23	5	17.8571
VPS33B	0	genome.wustl.edu	37	15	91542927	91542927	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	91542927	91542927	C	T	SNP	VPS33B	ENST00000333371	human	ensembl	74_37	-1	known	missense	c.1754	p.R585Q	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33B	HGNC	ENSG00000184056				447	0	0	159	96	37.6471
SLCO3A1	0	genome.wustl.edu	37	15	92669421	92669421	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	92669421	92669421	C	T	SNP	SLCO3A1	ENST00000318445	human	ensembl	74_37	+1	known	silent	c.1305	p.Y435	0.968	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				159	0	0	64	27	29.6703
CIITA	0	genome.wustl.edu	37	16	11000482	11000482	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	11000482	11000482	T	C	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.1133	p.L378P	0.545	NULL	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				55	0	0	31	7	18.4211
CACNA1H	0	genome.wustl.edu	37	16	1270432	1270432	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	1270432	1270432	A	G	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.6500	p.E2167G	0.876	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				77	0	0	17	3	15
MPG	0	genome.wustl.edu	37	16	133169	133169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	133169	133169	G	A	SNP	MPG	ENST00000219431	human	ensembl	74_37	+1	known	missense	c.434	p.R145H	1.000	pfam_PurDNA_glycsylse,superfamily_Formyl_transferase_C-like,tigrfam_PurDNA_glycsylse	pfam_PurDNA_glycsylse,superfamily_Formyl_transferase_C-like,tigrfam_PurDNA_glycsylse	-	no_errors	MPG	HGNC	ENSG00000103152				385	0	0	127	63	33.1579
BAIAP3	0	genome.wustl.edu	37	16	1396000	1396000	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	1396000	1396000	C	T	SNP	BAIAP3	ENST00000324385	human	ensembl	74_37	+1	known	missense	c.2327	p.A776V	0.220	NULL	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	BAIAP3	HGNC	ENSG00000007516				34	0	0	11	6	35.2941
ABCC1	0	genome.wustl.edu	37	16	16235124	16235124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	16235124	16235124	G	A	SNP	ABCC1	ENST00000399408	human	ensembl	74_37	+1	known	missense	c.4612	p.A1538T	0.787	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222				202	0	0	76	40	34.4828
IFT140	0	genome.wustl.edu	37	16	1630815	1630815	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	1630815	1630815	T	C	SNP	IFT140	ENST00000426508	human	ensembl	74_37	-1	known	missense	c.1469	p.H490R	0.992	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535				111	0	0	43	23	34.8485
TMC5	0	genome.wustl.edu	37	16	19452109	19452109	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	19452109	19452109	A	G	SNP	TMC5	ENST00000396229	human	ensembl	74_37	+1	known	missense	c.749	p.H250R	0.000	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534				133	0	0	75	45	37.5
PKD1	0	genome.wustl.edu	37	16	2144016	2144016	+	Splice_Site	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	2144016	2144016	T	C	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	splice_site	c.10619-2	e36-2	0.998	-	-	-	no_errors	PKD1	HGNC	ENSG00000008710				22	0	0	4	6	60
PKD1	0	genome.wustl.edu	37	16	2160630	2160630	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	2160630	2160630	A	C	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.4538	p.V1513G	0.048	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				84	0	0	46	4	8
CASKIN1	0	genome.wustl.edu	37	16	2233851	2233851	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	2233851	2233851	A	G	SNP	CASKIN1	ENST00000343516	human	ensembl	74_37	-1	known	missense	c.1508	p.I503T	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971				137	0	0	37	11	22.9167
EARS2	0	genome.wustl.edu	37	16	23541078	23541078	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	23541078	23541078	A	G	SNP	EARS2	ENST00000449606	human	ensembl	74_37	-1	known	missense	c.1208	p.L403P	0.987	superfamily_aa-tRNA-synth_I_codon-bd,tigrfam_Glu-tRNA-ligase_bac/mito	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,superfamily_aa-tRNA-synth_I_codon-bd,prints_Glu/Gln-tRNA-synth,tigrfam_Glu-tRNA-ligase_bac/mito	-	no_errors	EARS2	HGNC	ENSG00000103356				201	0	0	67	26	27.957
TNRC6A	0	genome.wustl.edu	37	16	24801521	24801521	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	24801521	24801521	A	G	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.1558	p.T520A	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				184	0	0	96	43	30.9353
TNRC6A	0	genome.wustl.edu	37	16	24806029	24806029	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	24806029	24806029	A	G	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.3517	p.M1173V	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				79	0	0	47	25	34.7222
GTF3C1	0	genome.wustl.edu	37	16	27476654	27476654	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	27476654	27476654	T	G	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.5282	p.E1761A	0.363	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				160	0	0	78	15	16.129
GTF3C1	0	genome.wustl.edu	37	16	27497449	27497449	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	27497449	27497449	T	C	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.3727	p.R1243G	0.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				414	0	0	145	72	33.1797
CCDC101	0	genome.wustl.edu	37	16	28596283	28596283	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	28596283	28596283	A	G	SNP	CCDC101	ENST00000317058	human	ensembl	74_37	+1	known	missense	c.125	p.H42R	1.000	NULL	pfam_SGF29_tudor-like_dom	-	no_errors	CCDC101	HGNC	ENSG00000176476				126	0	0	48	4	7.69231
SULT1A2	0	genome.wustl.edu	37	16	28604641	28604641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	28604641	28604641	C	T	SNP	SULT1A2	ENST00000335715	human	ensembl	74_37	-1	known	missense	c.526	p.V176M	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A2	HGNC	ENSG00000197165				169	0	0	56	33	37.0787
ATXN2L	0	genome.wustl.edu	37	16	28845454	28845454	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	28845454	28845454	G	T	SNP	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	silent	c.2094	p.L698	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				151	0	0	57	28	32.9412
RABEP2	0	genome.wustl.edu	37	16	28931233	28931233	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	28931233	28931233	G	A	SNP	RABEP2	ENST00000358201	human	ensembl	74_37	-1	known	silent	c.306	p.T102	0.002	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548				90	0	0	27	15	35.7143
NFATC2IP	0	genome.wustl.edu	37	16	28970321	28970321	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	28970321	28970321	T	C	SNP	NFATC2IP	ENST00000320805	human	ensembl	74_37	+1	known	missense	c.1001	p.V334A	0.963	smart_Ubiquitin_dom	pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	NFATC2IP	HGNC	ENSG00000176953				55	0	0	35	11	23.913
TAOK2	0	genome.wustl.edu	37	16	29989427	29989427	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	29989427	29989427	T	C	SNP	TAOK2	ENST00000308893	human	ensembl	74_37	+1	known	silent	c.150	p.N50	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				121	0	0	81	7	7.95455
TAOK2	0	genome.wustl.edu	37	16	30002182	30002182	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	30002182	30002182	C	T	SNP	TAOK2	ENST00000279394	human	ensembl	74_37	+1	known	silent	c.2523	p.N841	0.938	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				218	0	0	50	27	35.0649
ZNF629	0	genome.wustl.edu	37	16	30793629	30793629	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	30793629	30793629	G	A	SNP	ZNF629	ENST00000262525	human	ensembl	74_37	-1	known	missense	c.2020	p.R674C	0.018	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF629	HGNC	ENSG00000102870				29	0	0	11	6	35.2941
BCL7C	0	genome.wustl.edu	37	16	30899188	30899188	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	30899188	30899188	A	G	SNP	BCL7C	ENST00000215115	human	ensembl	74_37	-1	known	nonstop	c.652	p.*218R	1.000	NULL	pfam_BCL7	-	no_errors	BCL7C	HGNC	ENSG00000099385				490	0	0	118	77	39.4872
SETD1A	0	genome.wustl.edu	37	16	30992103	30992103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	30992103	30992103	G	A	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	missense	c.4625	p.R1542Q	1.000	pfam_COMPASS_Set1_N-SET	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				78	0	0	40	20	33.3333
OR1F1	0	genome.wustl.edu	37	16	3254280	3254280	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	3254280	3254280	T	C	SNP	OR1F1	ENST00000304646	human	ensembl	74_37	+1	known	missense	c.34	p.F12L	0.999	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1F1	HGNC	ENSG00000168124				74	0	0	32	11	25.5814
ARHGDIG	0	genome.wustl.edu	37	16	332697	332697	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	332697	332697	G	A	SNP	ARHGDIG	ENST00000219409	human	ensembl	74_37	+1	known	silent	c.561	p.P187	0.000	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	-	no_errors	ARHGDIG	HGNC	ENSG00000242173				33	0	0	11	3	21.4286
TRAP1	0	genome.wustl.edu	37	16	3739122	3739122	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	3739122	3739122	A	G	SNP	TRAP1	ENST00000246957	human	ensembl	74_37	-1	known	silent	c.264	p.H88	0.661	superfamily_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602				96	0	0	44	18	29.0323
CREBBP	0	genome.wustl.edu	37	16	3781199	3781199	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	3781199	3781199	C	T	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	silent	c.5166	p.V1722	0.998	pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				175	0	0	43	19	30.6452
ADCY9	0	genome.wustl.edu	37	16	4165236	4165236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	4165236	4165236	C	T	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	missense	c.208	p.G70R	0.541	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				56	0	0	8	15	65.2174
CORO7-PAM16	0	genome.wustl.edu	37	16	4415045	4415045	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	4415045	4415045	T	C	SNP	CORO7-PAM16	ENST00000572467	human	ensembl	74_37	-1	known	missense	c.857	p.Y286C	0.979	pfam_DUF1900	pfam_DUF1900,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7-PAM16	HGNC	ENSG00000103426				26	0	0	11	4	26.6667
NMRAL1	0	genome.wustl.edu	37	16	4516244	4516244	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	4516244	4516244	T	C	SNP	NMRAL1	ENST00000283429	human	ensembl	74_37	-1	known	missense	c.439	p.M147V	1.000	pfam_NmrA	pfam_NmrA,pfam_DH_sc/Rdtase_SDR,pfam_RCK_N	-	no_errors	NMRAL1	HGNC	ENSG00000153406				88	0	0	30	17	36.1702
C16orf71	0	genome.wustl.edu	37	16	4794910	4794910	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	4794910	4794910	A	G	SNP	C16orf71	ENST00000299320	human	ensembl	74_37	+1	known	missense	c.941	p.Q314R	0.004	NULL	NULL	-	no_errors	C16orf71	HGNC	ENSG00000166246				111	0	0	35	18	33.9623
PPL	0	genome.wustl.edu	37	16	4934705	4934705	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	4934705	4934705	C	A	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	missense	c.3951	p.E1317D	0.985	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				400	0	0	165	115	41.0714
CCDC135	0	genome.wustl.edu	37	16	57732056	57732056	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	57732056	57732056	G	A	SNP	CCDC135	ENST00000360716	human	ensembl	74_37	+1	known	silent	c.195	p.A65	0.000	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625				94	0	0	35	5	12.5
KIFC3	0	genome.wustl.edu	37	16	57829017	57829017	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	57829017	57829017	T	C	SNP	KIFC3	ENST00000379655	human	ensembl	74_37	-1	known	missense	c.209	p.D70G	0.999	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC3	HGNC	ENSG00000140859				80	0	0	30	4	11.7647
USB1	0	genome.wustl.edu	37	16	58043956	58043956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	58043956	58043956	G	A	SNP	USB1	ENST00000219281	human	ensembl	74_37	+1	known	missense	c.389	p.R130H	1.000	pfam_Usb1	pfam_Usb1	-	no_errors	USB1	HGNC	ENSG00000103005				135	0	0	56	42	42.8571
CNOT1	0	genome.wustl.edu	37	16	58585059	58585059	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	58585059	58585059	A	C	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.3319	p.S1107A	1.000	superfamily_ARM-type_fold	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				200	0	0	78	42	35
LINC00922	0	genome.wustl.edu	37	16	65345452	65345452	+	Splice_Site	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	65345452	65345452	T	C	SNP	LINC00922	ENST00000564041	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	0.004	-	-	-	no_errors	LINC00922	HGNC	ENSG00000261742				420	1	0.23753	132	47	26.257
RRAD	0	genome.wustl.edu	37	16	66956070	66956070	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	66956070	66956070	T	C	SNP	RRAD	ENST00000299759	human	ensembl	74_37	-1	known	missense	c.836	p.K279R	1.000	superfamily_P-loop_NTPase,pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RRAD	HGNC	ENSG00000166592				103	0	0	28	14	33.3333
ENKD1	0	genome.wustl.edu	37	16	67697207	67697207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	67697207	67697207	G	A	SNP	ENKD1	ENST00000243878	human	ensembl	74_37	-1	known	missense	c.898	p.R300C	0.880	NULL	NULL	-	no_errors	ENKD1	HGNC	ENSG00000124074				180	0	0	79	29	26.8519
GFOD2	0	genome.wustl.edu	37	16	67709180	67709180	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	67709180	67709180	T	C	SNP	GFOD2	ENST00000268797	human	ensembl	74_37	-1	known	missense	c.1036	p.S346G	1.000	NULL	pfam_Oxidoreductase_N	-	no_errors	GFOD2	HGNC	ENSG00000141098				275	0	0	105	17	13.9344
EDC4	0	genome.wustl.edu	37	16	67915891	67915891	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	67915891	67915891	G	A	SNP	EDC4	ENST00000358933	human	ensembl	74_37	+1	known	silent	c.3039	p.Q1013	1.000	NULL	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EDC4	HGNC	ENSG00000038358				32	0	0	34	5	12.8205
COG8	0	genome.wustl.edu	37	16	69368633	69368633	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	69368633	69368633	C	T	SNP	COG8	ENST00000306875	human	ensembl	74_37	-1	known	missense	c.1204	p.A402T	0.786	pirsf_COG8_Metazoal_Plant	pfam_COG8,superfamily_Cullin_repeat-like_dom,pirsf_COG8_Metazoal_Plant	-	no_errors	COG8	HGNC	ENSG00000213380				118	0	0	48	26	35.1351
AARS	0	genome.wustl.edu	37	16	70291987	70291987	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	70291987	70291987	T	C	SNP	AARS	ENST00000261772	human	ensembl	74_37	-1	known	missense	c.2126	p.D709G	1.000	pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS	HGNC	ENSG00000090861				51	0	0	25	7	21.875
COG4	0	genome.wustl.edu	37	16	70548291	70548291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	70548291	70548291	C	T	SNP	COG4	ENST00000323786	human	ensembl	74_37	-1	known	missense	c.491	p.R164H	1.000	NULL	pfam_COG_su4,smart_COG_su4	-	no_errors	COG4	HGNC	ENSG00000103051				53	0	0	31	16	34.0426
MTSS1L	0	genome.wustl.edu	37	16	70698190	70698190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	70698190	70698190	G	A	SNP	MTSS1L	ENST00000338779	human	ensembl	74_37	-1	known	missense	c.1634	p.A545V	0.878	NULL	pfam_IRSp53/MIM_homology_IMD	-	no_errors	MTSS1L	HGNC	ENSG00000132613				53	0	0	7	6	46.1538
HYDIN	0	genome.wustl.edu	37	16	70902576	70902576	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	70902576	70902576	T	C	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.11207	p.Q3736R	0.995	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				79	0	0	36	15	29.4118
CFDP1	0	genome.wustl.edu	37	16	75446576	75446576	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	75446576	75446576	T	C	SNP	CFDP1	ENST00000283882	human	ensembl	74_37	-1	known	missense	c.259	p.S87G	0.989	NULL	pfam_BCNT-C	-	no_errors	CFDP1	HGNC	ENSG00000153774				326	0	0	169	69	28.9916
CHST6	0	genome.wustl.edu	37	16	75513137	75513137	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	75513137	75513137	A	G	SNP	CHST6	ENST00000332272	human	ensembl	74_37	-1	known	missense	c.590	p.I197T	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST6	HGNC	ENSG00000183196				96	0	0	43	11	20.3704
CHST5	0	genome.wustl.edu	37	16	75563650	75563650	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	75563650	75563650	G	A	SNP	CHST5	ENST00000541075	human	ensembl	74_37	-1	known	silent	c.651	p.S217	0.034	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702				238	0	0	154	38	19.7917
CHST5	0	genome.wustl.edu	37	16	75564048	75564048	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	75564048	75564048	C	A	SNP	CHST5	ENST00000541075	human	ensembl	74_37	-1	known	missense	c.253	p.G85C	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702				117	0	0	49	11	18.3333
MON1B	0	genome.wustl.edu	37	16	77227598	77227598	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	77227598	77227598	G	A	SNP	MON1B	ENST00000248248	human	ensembl	74_37	+1	known	silent	c.399	p.S133	0.187	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1B	HGNC	ENSG00000103111				112	0	0	40	19	32.2034
ENSG00000259867	0	genome.wustl.edu	37	16	80574846	80574846	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	80574846	80574846	C	T	SNP	ENSG00000259867	ENST00000563267	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.832	-	-	-	no_errors	RP11-525K10.3	Clone_based_vega_gene	ENSG00000259867				10	0	0	3	2	40
GAN	0	genome.wustl.edu	37	16	81388112	81388112	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	81388112	81388112	A	G	SNP	GAN	ENST00000568107	human	ensembl	74_37	+1	known	missense	c.385	p.I129V	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	GAN	HGNC	ENSG00000261609				245	0	0	114	63	35.5932
MPHOSPH6	0	genome.wustl.edu	37	16	82182417	82182417	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	82182417	82182417	G	A	SNP	MPHOSPH6	ENST00000258169	human	ensembl	74_37	-1	known	silent	c.402	p.D134	0.998	NULL	pfam_MPP6	-	no_errors	MPHOSPH6	HGNC	ENSG00000135698				203	0	0	100	44	30.5556
MBTPS1	0	genome.wustl.edu	37	16	84125452	84125452	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	84125452	84125452	A	G	SNP	MBTPS1	ENST00000343411	human	ensembl	74_37	-1	known	missense	c.848	p.V283A	0.999	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	MBTPS1	HGNC	ENSG00000140943				99	0	0	54	19	26.0274
ADAD2	0	genome.wustl.edu	37	16	84224937	84224937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	84224937	84224937	C	T	SNP	ADAD2	ENST00000268624	human	ensembl	74_37	+1	known	missense	c.101	p.P34L	0.103	NULL	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD2	HGNC	ENSG00000140955				36	0	0	18	8	30.7692
KLHL36	0	genome.wustl.edu	37	16	84695477	84695477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	84695477	84695477	C	T	SNP	KLHL36	ENST00000564996	human	ensembl	74_37	+1	known	missense	c.1589	p.A530V	0.999	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686				46	0	0	26	13	33.3333
FOXF1	0	genome.wustl.edu	37	16	86544482	86544482	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	86544482	86544482	A	G	SNP	FOXF1	ENST00000262426	human	ensembl	74_37	+1	known	missense	c.307	p.N103D	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF1	HGNC	ENSG00000103241				277	0	0	79	58	42.3358
KLHDC4	0	genome.wustl.edu	37	16	87744970	87744970	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	87744970	87744970	C	T	SNP	KLHDC4	ENST00000270583	human	ensembl	74_37	-1	known	silent	c.915	p.P305	0.004	pfam_Kelch_2	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	KLHDC4	HGNC	ENSG00000104731				117	0	0	45	17	27.4194
CTU2	0	genome.wustl.edu	37	16	88779164	88779164	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	88779164	88779164	G	A	SNP	CTU2	ENST00000567949	human	ensembl	74_37	+1	known	silent	c.801	p.P267	0.000	NULL	pfam_Thiouridylase_cyt_su2	-	no_errors	CTU2	HGNC	ENSG00000174177				60	0	0	22	8	26.6667
ACSF3	0	genome.wustl.edu	37	16	89169058	89169058	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	89169058	89169058	T	C	SNP	ACSF3	ENST00000317447	human	ensembl	74_37	+1	known	missense	c.713	p.I238T	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF3	HGNC	ENSG00000176715				131	0	0	26	16	38.0952
ZNF778	0	genome.wustl.edu	37	16	89293297	89293297	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	89293297	89293297	G	A	SNP	ZNF778	ENST00000433976	human	ensembl	74_37	+1	known	missense	c.517	p.G173S	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF778	HGNC	ENSG00000170100				201	0	0	73	38	34.2342
SPG7	0	genome.wustl.edu	37	16	89590439	89590439	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	89590439	89590439	C	T	SNP	SPG7	ENST00000268704	human	ensembl	74_37	+1	known	silent	c.402	p.D134	0.990	NULL	pfam_Peptidase_M41,pfam_ATPase_AAA_core,pfam_Pept_M41_FtsH_extracell,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	SPG7	HGNC	ENSG00000197912				81	0	0	37	16	30.1887
CDK10	0	genome.wustl.edu	37	16	89758245	89758245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	89758245	89758245	G	A	SNP	CDK10	ENST00000353379	human	ensembl	74_37	+1	known	missense	c.367	p.D123N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK10	HGNC	ENSG00000185324				107	0	0	41	26	38.806
FANCA	0	genome.wustl.edu	37	16	89871719	89871719	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	89871719	89871719	C	A	SNP	FANCA	ENST00000389301	human	ensembl	74_37	-1	known	missense	c.678	p.Q226H	0.000	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741				82	0	0	20	10	33.3333
MYH2	0	genome.wustl.edu	37	17	10426662	10426662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	10426662	10426662	C	T	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.5540	p.R1847H	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				188	0	0	83	31	27.193
MYH3	0	genome.wustl.edu	37	17	10535191	10535191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	10535191	10535191	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.5099	p.R1700Q	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				149	0	0	56	12	17.6471
INPP5K	0	genome.wustl.edu	37	17	1401243	1401243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	1401243	1401243	G	A	SNP	INPP5K	ENST00000421807	human	ensembl	74_37	-1	known	missense	c.950	p.T317M	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5K	HGNC	ENSG00000132376				296	0	0	122	43	26.0606
INPP5K	0	genome.wustl.edu	37	17	1417245	1417245	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	1417245	1417245	A	G	SNP	INPP5K	ENST00000421807	human	ensembl	74_37	-1	known	missense	c.73	p.S25P	0.983	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5K	HGNC	ENSG00000132376				91	0	0	35	16	31.3725
ENSG00000205325	0	genome.wustl.edu	37	17	14683361	14683361	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	14683361	14683361	A	G	SNP	ENSG00000205325	ENST00000379640	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC005863.1	Clone_based_vega_gene	ENSG00000205325				131	0	0	59	17	22.3684
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				122	1	0.813008	90	30	25
101928503	0	genome.wustl.edu	37	17	15469094	15469094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	15469094	15469094	C	T	SNP	101928503	ENST00000312127	human	ensembl	74_37	-1	known	missense	c.485	p.R162H	0.000	NULL	NULL	-	no_errors	CDRT1	Uniprot_gn	ENSG00000181464				151	0	0	87	24	21.6216
CENPV	0	genome.wustl.edu	37	17	16252027	16252027	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	16252027	16252027	T	C	SNP	CENPV	ENST00000476243	human	ensembl	74_37	-1	known	missense	c.20	p.N7S	0.000	superfamily_Mss4-like	pfam_GFA/CENP-V,superfamily_Mss4-like	-	no_errors	CENPV	HGNC	ENSG00000166582				77	0	0	42	17	28.8136
SMYD4	0	genome.wustl.edu	37	17	1690197	1690197	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	1690197	1690197	G	A	SNP	SMYD4	ENST00000305513	human	ensembl	74_37	-1	known	silent	c.1791	p.C597	0.940	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532				70	0	0	31	18	36.7347
RAI1	0	genome.wustl.edu	37	17	17700156	17700156	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	17700156	17700156	C	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	silent	c.3894	p.P1298	0.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				258	0	0	75	45	37.5
SREBF1	0	genome.wustl.edu	37	17	17720439	17720439	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	17720439	17720439	A	G	SNP	SREBF1	ENST00000355815	human	ensembl	74_37	-1	known	missense	c.1708	p.W570R	0.999	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF1	HGNC	ENSG00000072310				97	0	0	36	11	23.4043
DRG2	0	genome.wustl.edu	37	17	17997175	17997175	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	17997175	17997175	G	T	SNP	DRG2	ENST00000225729	human	ensembl	74_37	+1	known	missense	c.113	p.R38L	1.000	NULL	pfam_TGS,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,superfamily_TGS-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	DRG2	HGNC	ENSG00000108591				123	0	0	35	21	37.5
MYO15A	0	genome.wustl.edu	37	17	18071031	18071031	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	18071031	18071031	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.10076	p.P3359L	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				73	0	0	26	13	33.3333
USP32P2	0	genome.wustl.edu	37	17	18423000	18423000	+	RNA	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	18423000	18423000	G	T	SNP	USP32P2	ENST00000412260	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.707	-	-	-	no_errors	USP32P2	HGNC	ENSG00000233327				17	0	0	17	6	26.087
FAM83G	0	genome.wustl.edu	37	17	18874698	18874698	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	18874698	18874698	C	A	SNP	FAM83G	ENST00000345041	human	ensembl	74_37	-1	known	missense	c.2446	p.A816S	0.162	NULL	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522				150	0	0	53	22	29.3333
SLC5A10	0	genome.wustl.edu	37	17	18918512	18918512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	18918512	18918512	G	A	SNP	SLC5A10	ENST00000395647	human	ensembl	74_37	+1	known	missense	c.1289	p.R430Q	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A10	HGNC	ENSG00000154025				37	0	0	7	12	63.1579
SLC47A2	0	genome.wustl.edu	37	17	19618513	19618513	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	19618513	19618513	C	T	SNP	SLC47A2	ENST00000325411	human	ensembl	74_37	-1	known	silent	c.141	p.L47	0.337	pfam_MATE	pfam_MATE,tigrfam_MATE	-	no_errors	SLC47A2	HGNC	ENSG00000180638				107	0	0	41	4	8.88889
LGALS9B	0	genome.wustl.edu	37	17	20354887	20354887	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	20354887	20354887	A	G	SNP	LGALS9B	ENST00000423676	human	ensembl	74_37	-1	known	silent	c.831	p.A277	0.016	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS9B	HGNC	ENSG00000170298				115	0	0	40	22	35.4839
MAP2K3	0	genome.wustl.edu	37	17	21215533	21215533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	21215533	21215533	C	T	SNP	MAP2K3	ENST00000342679	human	ensembl	74_37	+1	known	missense	c.854	p.P285L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152				80	0	0	30	8	21.0526
SRR	0	genome.wustl.edu	37	17	2226566	2226566	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	2226566	2226566	T	C	SNP	SRR	ENST00000344595	human	ensembl	74_37	+1	known	missense	c.731	p.I244T	1.000	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SRR	HGNC	ENSG00000167720				222	0	0	82	41	33.3333
PAFAH1B1	0	genome.wustl.edu	37	17	2570398	2570398	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	2570398	2570398	A	G	SNP	PAFAH1B1	ENST00000397195	human	ensembl	74_37	+1	known	missense	c.305	p.Y102C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Dynein_regulator_LIS1	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pirsf_Dynein_regulator_LIS1,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168				122	0	0	52	15	22.3881
NLK	0	genome.wustl.edu	37	17	26518101	26518101	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	26518101	26518101	C	T	SNP	NLK	ENST00000407008	human	ensembl	74_37	+1	known	nonsense	c.1291	p.R431*	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NLK	HGNC	ENSG00000087095				123	0	0	51	21	29.1667
SUPT6H	0	genome.wustl.edu	37	17	27009838	27009838	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	27009838	27009838	C	T	SNP	SUPT6H	ENST00000314616	human	ensembl	74_37	+1	known	missense	c.1691	p.A564V	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111				97	0	0	38	23	37.7049
SSH2	0	genome.wustl.edu	37	17	27957929	27957929	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	27957929	27957929	T	C	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	missense	c.4202	p.H1401R	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				281	0	0	113	57	33.5294
ATAD5	0	genome.wustl.edu	37	17	29221133	29221133	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	29221133	29221133	T	C	SNP	ATAD5	ENST00000321990	human	ensembl	74_37	+1	known	silent	c.5262	p.N1754	0.002	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208				59	0	0	38	8	17.3913
SHPK	0	genome.wustl.edu	37	17	3518749	3518749	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	3518749	3518749	G	T	SNP	SHPK	ENST00000225519	human	ensembl	74_37	-1	known	silent	c.906	p.A302	0.939	NULL	pfam_Carb_kinase_FGGY_N	-	no_errors	SHPK	HGNC	ENSG00000197417				109	0	0	37	14	27.451
AATF	0	genome.wustl.edu	37	17	35348137	35348137	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	35348137	35348137	A	T	SNP	AATF	ENST00000225402	human	ensembl	74_37	+1	known	missense	c.1379	p.D460V	1.000	NULL	pfam_AATF_C	-	no_errors	AATF	HGNC	ENSG00000108270				147	0	0	77	31	28.7037
GPR179	0	genome.wustl.edu	37	17	36483237	36483237	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	36483237	36483237	T	C	SNP	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	missense	c.6215	p.E2072G	0.264	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888				195	0	0	90	40	30.7692
NEUROD2	0	genome.wustl.edu	37	17	37762190	37762190	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	37762190	37762190	G	T	SNP	NEUROD2	ENST00000302584	human	ensembl	74_37	-1	known	silent	c.663	p.A221	0.580	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD2	HGNC	ENSG00000171532				48	0	0	16	9	36
GSDMA	0	genome.wustl.edu	37	17	38131187	38131187	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	38131187	38131187	C	A	SNP	GSDMA	ENST00000301659	human	ensembl	74_37	+1	known	missense	c.941	p.T314N	0.996	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMA	HGNC	ENSG00000167914				44	0	0	11	3	21.4286
NR1D1	0	genome.wustl.edu	37	17	38251794	38251794	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	38251794	38251794	T	C	SNP	NR1D1	ENST00000246672	human	ensembl	74_37	-1	known	missense	c.1151	p.N384S	0.999	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368				147	0	0	42	21	33.3333
NR1D1	0	genome.wustl.edu	37	17	38252042	38252042	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	38252042	38252042	G	T	SNP	NR1D1	ENST00000246672	human	ensembl	74_37	-1	known	silent	c.903	p.T301	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D1	HGNC	ENSG00000126368				66	0	0	23	13	36.1111
CASC3	0	genome.wustl.edu	37	17	38320386	38320386	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	38320386	38320386	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	nonsense	c.1438	p.Q480*	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				62	0	0	22	9	29.0323
RARA	0	genome.wustl.edu	37	17	38499007	38499007	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	38499007	38499007	G	T	SNP	RARA	ENST00000394081	human	ensembl	74_37	+1	known	silent	c.51	p.V17	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARA	HGNC	ENSG00000131759				255	0	0	92	62	40.2597
TNS4	0	genome.wustl.edu	37	17	38634836	38634836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	38634836	38634836	G	A	SNP	TNS4	ENST00000254051	human	ensembl	74_37	-1	known	missense	c.1975	p.R659W	0.941	pfam_PTB,smart_PTB/PI_dom	pfam_PTB,pfam_SH2,smart_SH2,smart_PTB/PI_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746				176	0	0	34	27	44.2623
KRT23	0	genome.wustl.edu	37	17	39092635	39092635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	39092635	39092635	G	A	SNP	KRT23	ENST00000209718	human	ensembl	74_37	-1	known	missense	c.221	p.A74V	0.369	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT23	HGNC	ENSG00000108244				236	0	0	91	26	22.2222
KRTAP1-5	0	genome.wustl.edu	37	17	39183218	39183218	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	39183218	39183218	T	G	SNP	KRTAP1-5	ENST00000361883	human	ensembl	74_37	-1	known	missense	c.190	p.S64R	0.344	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP1-5	HGNC	ENSG00000221852				129	0	0	47	20	29.8507
KRT17	0	genome.wustl.edu	37	17	39780474	39780474	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	39780474	39780474	G	T	SNP	KRT17	ENST00000311208	human	ensembl	74_37	-1	known	silent	c.288	p.A96	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT17	HGNC	ENSG00000128422				336	0	0	115	50	30.303
LEPREL4	0	genome.wustl.edu	37	17	39967232	39967232	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	39967232	39967232	T	C	SNP	LEPREL4	ENST00000355468	human	ensembl	74_37	-1	known	missense	c.670	p.T224A	0.965	NULL	NULL	-	no_errors	LEPREL4	HGNC	ENSG00000141696				50	0	0	28	15	34.8837
ACLY	0	genome.wustl.edu	37	17	40039404	40039404	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	40039404	40039404	C	T	SNP	ACLY	ENST00000352035	human	ensembl	74_37	-1	known	missense	c.2236	p.G746R	1.000	pfam_CoA_ligase,superfamily_Citrate_synthase-like_core,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473				130	0	0	53	21	28.3784
ANKFY1	0	genome.wustl.edu	37	17	4077240	4077240	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	4077240	4077240	C	T	SNP	ANKFY1	ENST00000570535	human	ensembl	74_37	-1	known	missense	c.3013	p.V1005M	0.997	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722				200	0	0	79	36	31.3043
EZH1	0	genome.wustl.edu	37	17	40879701	40879701	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	40879701	40879701	T	C	SNP	EZH1	ENST00000435174	human	ensembl	74_37	-1	known	missense	c.22	p.T8A	1.000	NULL	pfam_SET_dom,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH1	HGNC	ENSG00000108799				149	0	0	55	22	28.5714
VAT1	0	genome.wustl.edu	37	17	41168515	41168515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	41168515	41168515	G	A	SNP	VAT1	ENST00000355653	human	ensembl	74_37	-1	known	missense	c.907	p.R303W	0.988	pfam_ADH_C,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	VAT1	HGNC	ENSG00000108828				64	0	0	30	12	28.5714
MAP3K14	0	genome.wustl.edu	37	17	43348437	43348437	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	43348437	43348437	C	T	SNP	MAP3K14	ENST00000344686	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.157	-	-	-	no_errors	MAP3K14	HGNC	ENSG00000006062				41	0	0	15	7	31.8182
ARHGAP27	0	genome.wustl.edu	37	17	43474075	43474075	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	43474075	43474075	C	A	SNP	ARHGAP27	ENST00000428638	human	ensembl	74_37	-1	known	missense	c.2033	p.R678L	0.997	NULL	pfam_RhoGAP_dom,pfam_WW_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP27	HGNC	ENSG00000159314				72	0	0	23	17	42.5
SPPL2C	0	genome.wustl.edu	37	17	43922517	43922517	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	43922517	43922517	G	A	SNP	SPPL2C	ENST00000329196	human	ensembl	74_37	+1	known	missense	c.245	p.R82H	0.005	NULL	pfam_Peptidase_A22B_SPP,pfam_Protease-assoc_domain,smart_Preselin/SPP	-	no_errors	SPPL2C	HGNC	ENSG00000185294				67	0	0	24	19	44.186
HOXB3	0	genome.wustl.edu	37	17	46628218	46628218	+	Silent	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	46628218	46628218	G	C	SNP	HOXB3	ENST00000311626	human	ensembl	74_37	-1	known	silent	c.774	p.G258	0.986	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093				231	0	0	98	18	15.5172
HOXB4	0	genome.wustl.edu	37	17	46655263	46655263	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	46655263	46655263	A	G	SNP	HOXB4	ENST00000332503	human	ensembl	74_37	-1	known	missense	c.419	p.V140A	1.000	prints_Homeobox_antennapedia	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB4	HGNC	ENSG00000182742				96	0	0	21	9	30
VMO1	0	genome.wustl.edu	37	17	4689578	4689578	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	4689578	4689578	C	T	SNP	VMO1	ENST00000328739	human	ensembl	74_37	-1	known	missense	c.70	p.A24T	0.001	NULL	pfam_VOMI,superfamily_VOMI	-	no_errors	VMO1	HGNC	ENSG00000182853				45	0	0	15	4	21.0526
CHRNE	0	genome.wustl.edu	37	17	4804134	4804134	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	4804134	4804134	C	T	SNP	CHRNE	ENST00000293780	human	ensembl	74_37	-1	known	missense	c.871	p.A291T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNE	HGNC	ENSG00000108556				57	0	0	22	10	31.25
COL1A1	0	genome.wustl.edu	37	17	48263173	48263173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	48263173	48263173	C	T	SNP	COL1A1	ENST00000225964	human	ensembl	74_37	-1	known	missense	c.4214	p.R1405H	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821				82	0	0	32	12	27.2727
ENO3	0	genome.wustl.edu	37	17	4860186	4860186	+	Splice_Site	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	4860186	4860186	T	A	SNP	ENO3	ENST00000323997	human	ensembl	74_37	+1	known	splice_site	c.1235+2	e10+2	1.000	-	-	-	no_errors	ENO3	HGNC	ENSG00000108515				356	0	0	120	48	28.5714
RABEP1	0	genome.wustl.edu	37	17	5238641	5238641	+	Splice_Site	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	5238641	5238641	T	C	SNP	RABEP1	ENST00000262477	human	ensembl	74_37	+1	known	splice_site	c.528+2	e4+2	1.000	-	-	-	no_errors	RABEP1	HGNC	ENSG00000029725				38	0	0	19	10	34.4828
VPS53	0	genome.wustl.edu	37	17	534828	534828	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	534828	534828	C	A	SNP	VPS53	ENST00000437048	human	ensembl	74_37	-1	known	missense	c.649	p.A217S	1.000	pfam_Vps53_N	pfam_Vps53_N,pfam_Vacuolar_sorting-assoc_54	-	no_errors	VPS53	HGNC	ENSG00000141252				123	0	0	38	9	19.1489
DGKE	0	genome.wustl.edu	37	17	54925289	54925289	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	54925289	54925289	G	T	SNP	DGKE	ENST00000284061	human	ensembl	74_37	+1	known	missense	c.751	p.D251Y	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933				89	0	0	36	18	33.3333
SCPEP1	0	genome.wustl.edu	37	17	55075765	55075765	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	55075765	55075765	C	T	SNP	SCPEP1	ENST00000262288	human	ensembl	74_37	+1	known	silent	c.900	p.H300	0.915	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	SCPEP1	HGNC	ENSG00000121064				123	0	0	43	27	38.5714
SUPT4H1	0	genome.wustl.edu	37	17	56423650	56423650	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	56423650	56423650	C	T	SNP	SUPT4H1	ENST00000225504	human	ensembl	74_37	-1	known	missense	c.311	p.R104Q	1.000	pirsf_Spt4	pfam_Spt4/RpoE2_Znf,pirsf_Spt4	-	no_errors	SUPT4H1	HGNC	ENSG00000213246				146	1	0.680272	71	39	35.4545
TLK2	0	genome.wustl.edu	37	17	60685462	60685462	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	60685462	60685462	A	G	SNP	TLK2	ENST00000326270	human	ensembl	74_37	+1	known	missense	c.2098	p.T700A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TLK2	HGNC	ENSG00000146872				78	0	0	41	9	18
MARCH10	0	genome.wustl.edu	37	17	60837243	60837243	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	60837243	60837243	A	G	SNP	MARCH10	ENST00000311269	human	ensembl	74_37	-1	known	missense	c.335	p.M112T	0.969	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838				139	0	0	73	38	34.2342
TANC2	0	genome.wustl.edu	37	17	61498806	61498806	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	61498806	61498806	C	T	SNP	TANC2	ENST00000424789	human	ensembl	74_37	+1	known	silent	c.5463	p.D1821	0.006	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921				85	0	0	32	17	34.6939
MAP3K3	0	genome.wustl.edu	37	17	61759260	61759260	+	Splice_Site	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	61759260	61759260	G	A	SNP	MAP3K3	ENST00000361357	human	ensembl	74_37	+1	known	splice_site	c.729+1	e8+1	1.000	-	-	-	no_errors	MAP3K3	HGNC	ENSG00000198909				188	0	0	53	27	33.75
PLEKHM1P	0	genome.wustl.edu	37	17	62796801	62796801	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	62796801	62796801	A	G	SNP	PLEKHM1P	ENST00000578036	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PLEKHM1P	HGNC	ENSG00000214176				74	0	0	23	11	32.3529
LRRC37A3	0	genome.wustl.edu	37	17	62893280	62893280	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	62893280	62893280	T	C	SNP	LRRC37A3	ENST00000319651	human	ensembl	74_37	-1	known	silent	c.96	p.L32	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809				319	0	0	180	16	8.16327
PITPNM3	0	genome.wustl.edu	37	17	6377844	6377844	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	6377844	6377844	C	T	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	missense	c.1166	p.R389H	1.000	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				44	0	0	8	5	38.4615
CACNG4	0	genome.wustl.edu	37	17	65014359	65014359	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	65014359	65014359	A	G	SNP	CACNG4	ENST00000262138	human	ensembl	74_37	+1	known	missense	c.275	p.Y92C	0.997	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g4su,prints_VDCC_gsu,prints_Claudin	-	no_errors	CACNG4	HGNC	ENSG00000075461				88	0	0	34	10	22.7273
ABCA9	0	genome.wustl.edu	37	17	66981199	66981199	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	66981199	66981199	G	T	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	silent	c.4279	p.R1427	0.991	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				134	0	0	52	11	17.4603
ABCA9	0	genome.wustl.edu	37	17	66981227	66981227	+	Silent	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	66981227	66981227	G	C	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	silent	c.4251	p.P1417	0.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				135	0	0	54	16	22.8571
ABCA9	0	genome.wustl.edu	37	17	66981232	66981232	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	66981232	66981232	C	A	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	missense	c.4246	p.A1416S	0.054	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				133	0	0	50	16	24.2424
NEURL4	0	genome.wustl.edu	37	17	7229602	7229602	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	7229602	7229602	T	C	SNP	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	missense	c.1265	p.Y422C	1.000	smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041				58	0	0	16	12	42.8571
GRIN2C	0	genome.wustl.edu	37	17	72851126	72851126	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	72851126	72851126	A	T	SNP	GRIN2C	ENST00000293190	human	ensembl	74_37	-1	known	missense	c.106	p.F36I	1.000	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509				50	0	0	24	7	22.5806
USH1G	0	genome.wustl.edu	37	17	72916353	72916353	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	72916353	72916353	A	C	SNP	USH1G	ENST00000319642	human	ensembl	74_37	-1	known	missense	c.578	p.L193R	0.997	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	USH1G	HGNC	ENSG00000182040				106	1	0.934579	29	16	35.5556
ICT1	0	genome.wustl.edu	37	17	73008915	73008915	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	73008915	73008915	T	C	SNP	ICT1	ENST00000301585	human	ensembl	74_37	+1	known	missense	c.134	p.L45P	1.000	NULL	pfam_Pep_chain_release_fac_I_II	-	no_errors	ICT1	HGNC	ENSG00000167862				50	0	0	19	9	32.1429
KCTD2	0	genome.wustl.edu	37	17	73043606	73043606	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	73043606	73043606	A	C	SNP	KCTD2	ENST00000322444	human	ensembl	74_37	+1	known	missense	c.261	p.R87S	0.998	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD2	HGNC	ENSG00000180901				54	0	0	16	4	20
KIAA0195	0	genome.wustl.edu	37	17	73485723	73485723	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	73485723	73485723	T	C	SNP	KIAA0195	ENST00000314256	human	ensembl	74_37	+1	known	missense	c.934	p.Y312H	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728				112	0	0	44	20	31.25
CASKIN2	0	genome.wustl.edu	37	17	73504338	73504338	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	73504338	73504338	G	A	SNP	CASKIN2	ENST00000321617	human	ensembl	74_37	-1	known	silent	c.123	p.N41	0.972	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN2	HGNC	ENSG00000177303				54	0	0	20	4	16.6667
ITGB4	0	genome.wustl.edu	37	17	73750744	73750744	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	73750744	73750744	A	T	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	missense	c.4406	p.Y1469F	0.997	pirsf_Integrin_bsu-4	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				104	0	0	50	4	7.40741
UNC13D	0	genome.wustl.edu	37	17	73836398	73836398	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	73836398	73836398	G	T	SNP	UNC13D	ENST00000412096	human	ensembl	74_37	-1	known	silent	c.766	p.R256	0.928	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	UNC13D	HGNC	ENSG00000092929				58	0	0	26	17	39.5349
ST6GALNAC1	0	genome.wustl.edu	37	17	74622396	74622396	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	74622396	74622396	T	G	SNP	ST6GALNAC1	ENST00000156626	human	ensembl	74_37	-1	known	missense	c.1390	p.M464L	0.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC1	HGNC	ENSG00000070526				85	0	0	40	15	27.2727
ENGASE	0	genome.wustl.edu	37	17	77080692	77080692	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	77080692	77080692	G	A	SNP	ENGASE	ENST00000579016	human	ensembl	74_37	+1	known	silent	c.1515	p.T505	0.001	NULL	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280				314	0	0	99	53	34.8684
CCDC40	0	genome.wustl.edu	37	17	78013751	78013751	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	78013751	78013751	A	G	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	silent	c.234	p.E78	0.000	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				114	0	0	28	19	40.4255
RNF213	0	genome.wustl.edu	37	17	78319491	78319491	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	78319491	78319491	C	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	silent	c.7356	p.H2452	0.523	superfamily_P-loop_NTPase,smart_AAA+_ATPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				172	0	0	76	51	40.1575
ALOX12B	0	genome.wustl.edu	37	17	7978948	7978948	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	7978948	7978948	A	G	SNP	ALOX12B	ENST00000319144	human	ensembl	74_37	-1	known	missense	c.1619	p.I540T	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C,prints_LipOase_mml	-	no_errors	ALOX12B	HGNC	ENSG00000179477				379	0	0	182	12	6.18557
SIRT7	0	genome.wustl.edu	37	17	79870360	79870360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	79870360	79870360	C	T	SNP	SIRT7	ENST00000328666	human	ensembl	74_37	-1	known	missense	c.1135	p.A379T	0.080	NULL	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT7	HGNC	ENSG00000187531				223	0	0	93	51	35.4167
ENSG00000264769	0	genome.wustl.edu	37	17	79880973	79880973	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	79880973	79880973	G	A	SNP	ENSG00000264769	ENST00000580897	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-498C9.12	Clone_based_vega_gene	ENSG00000264769				33	0	0	13	7	35
GPS1	0	genome.wustl.edu	37	17	80014641	80014641	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	80014641	80014641	A	G	SNP	GPS1	ENST00000355130	human	ensembl	74_37	+1	known	missense	c.1373	p.K458R	1.000	pfam_PCI_dom,smart_PCI_dom	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	GPS1	HGNC	ENSG00000169727				37	0	0	13	4	23.5294
FASN	0	genome.wustl.edu	37	17	80049317	80049317	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	80049317	80049317	G	A	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	missense	c.1273	p.R425W	1.000	NULL	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				33	0	0	5	4	44.4444
NARF	0	genome.wustl.edu	37	17	80417964	80417964	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	80417964	80417964	A	G	SNP	NARF	ENST00000580748	human	ensembl	74_37	+1	known	missense	c.124	p.S42G	0.000	NULL	NULL	-	no_errors	NARF	HGNC	ENSG00000141562				101	0	0	45	12	21.0526
PIK3R5	0	genome.wustl.edu	37	17	8791599	8791599	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	8791599	8791599	C	T	SNP	PIK3R5	ENST00000447110	human	ensembl	74_37	-1	known	missense	c.1505	p.R502H	1.000	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506				144	0	0	43	18	29.5082
MPPE1	0	genome.wustl.edu	37	18	11885892	11885892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	11885892	11885892	C	T	SNP	MPPE1	ENST00000592306	human	ensembl	74_37	-1	known	missense	c.227	p.R76Q	0.001	NULL	NULL	-	no_errors	MPPE1	HGNC	ENSG00000154889				8	0	0	13	3	18.75
DSG1	0	genome.wustl.edu	37	18	28914077	28914077	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	28914077	28914077	T	C	SNP	DSG1	ENST00000257192	human	ensembl	74_37	+1	known	missense	c.917	p.V306A	0.679	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmosomal_cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760				155	0	0	88	48	35.2941
MYOM1	0	genome.wustl.edu	37	18	3084001	3084001	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	3084001	3084001	A	G	SNP	MYOM1	ENST00000356443	human	ensembl	74_37	-1	known	missense	c.4364	p.V1455A	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM1	HGNC	ENSG00000101605				9	0	0	6	5	45.4545
MYL12A	0	genome.wustl.edu	37	18	3253948	3253948	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	3253948	3253948	T	C	SNP	MYL12A	ENST00000217652	human	ensembl	74_37	+1	known	silent	c.243	p.N81	0.991	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL12A	HGNC	ENSG00000101608				118	0	0	58	41	41.4141
PIAS2	0	genome.wustl.edu	37	18	44392466	44392466	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	44392466	44392466	C	A	SNP	PIAS2	ENST00000585916	human	ensembl	74_37	-1	known	missense	c.1796	p.S599I	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS2	HGNC	ENSG00000078043				61	0	0	32	13	28.8889
TCEB3B	0	genome.wustl.edu	37	18	44560351	44560351	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	44560351	44560351	T	A	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	nonsense	c.1285	p.K429*	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				155	0	0	82	37	31.0924
CTIF	0	genome.wustl.edu	37	18	46287883	46287883	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	46287883	46287883	G	T	SNP	CTIF	ENST00000382998	human	ensembl	74_37	+1	known	missense	c.1200	p.E400D	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	CTIF	HGNC	ENSG00000134030				101	0	0	73	9	10.9756
SMAD4	0	genome.wustl.edu	37	18	48575209	48575209	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	48575209	48575209	C	T	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	nonsense	c.403	p.R135*	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				92	0	0	47	27	36.4865
SMAD4	0	genome.wustl.edu	37	18	48591918	48591918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	48591918	48591918	C	T	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	missense	c.1081	p.R361C	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				116	0	0	50	25	33.3333
MBD2	0	genome.wustl.edu	37	18	51686245	51686245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	51686245	51686245	G	A	SNP	MBD2	ENST00000256429	human	ensembl	74_37	-1	known	missense	c.1138	p.R380C	0.992	NULL	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD2	HGNC	ENSG00000134046				127	0	0	49	29	37.1795
RAB27B	0	genome.wustl.edu	37	18	52544862	52544862	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	52544862	52544862	G	A	SNP	RAB27B	ENST00000262094	human	ensembl	74_37	+1	known	missense	c.46	p.G16R	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB27B	HGNC	ENSG00000041353				72	0	0	34	23	40.3509
WDR7	0	genome.wustl.edu	37	18	54448763	54448763	+	Splice_Site	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	54448763	54448763	G	T	SNP	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	splice_site	c.3067-1	e18-1	1.000	-	-	-	no_errors	WDR7	HGNC	ENSG00000091157				85	0	0	36	12	25
ZNF532	0	genome.wustl.edu	37	18	56587463	56587463	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	56587463	56587463	T	C	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	silent	c.1944	p.H648	0.991	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657				162	0	0	60	34	36.1702
MC4R	0	genome.wustl.edu	37	18	58039381	58039381	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	58039381	58039381	C	T	SNP	MC4R	ENST00000299766	human	ensembl	74_37	-1	known	missense	c.202	p.A68T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_rcpt_4,prints_GPCR_Rhodpsn,prints_Melancort_rcpt,prints_Cnbnoid_rcpt	-	no_errors	MC4R	HGNC	ENSG00000166603				144	0	0	80	41	33.8843
ARHGAP28	0	genome.wustl.edu	37	18	6887167	6887167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	6887167	6887167	G	A	SNP	ARHGAP28	ENST00000400091	human	ensembl	74_37	+1	known	missense	c.1465	p.V489I	0.992	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756				87	0	0	26	10	27.7778
LAMA1	0	genome.wustl.edu	37	18	6958590	6958590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	6958590	6958590	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.7850	p.T2617M	0.087	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				63	0	0	47	15	24.1935
LAMA1	0	genome.wustl.edu	37	18	7016644	7016644	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	7016644	7016644	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.2835	p.G945	0.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				49	0	0	23	12	34.2857
LAMA1	0	genome.wustl.edu	37	18	7032152	7032152	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	7032152	7032152	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.2187	p.R729	0.000	pfam_EGF_laminin,smart_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				65	0	0	25	9	26.4706
ZADH2	0	genome.wustl.edu	37	18	72913630	72913630	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	72913630	72913630	T	C	SNP	ZADH2	ENST00000322342	human	ensembl	74_37	-1	known	missense	c.875	p.K292R	1.000	pfam_ADH_C,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ZADH2	HGNC	ENSG00000180011				145	0	0	47	28	37.3333
ZNF516	0	genome.wustl.edu	37	18	74153207	74153207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	74153207	74153207	C	T	SNP	ZNF516	ENST00000443185	human	ensembl	74_37	-1	known	missense	c.1804	p.A602T	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493				40	0	0	13	2	13.3333
ZNF516	0	genome.wustl.edu	37	18	74154511	74154511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	74154511	74154511	G	A	SNP	ZNF516	ENST00000443185	human	ensembl	74_37	-1	known	missense	c.500	p.P167L	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493				46	0	0	19	11	36.6667
GALR1	0	genome.wustl.edu	37	18	74962917	74962917	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	74962917	74962917	T	C	SNP	GALR1	ENST00000299727	human	ensembl	74_37	+1	known	missense	c.413	p.V138A	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GAL1_rcpt,prints_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_NPY_rcpt	-	no_errors	GALR1	HGNC	ENSG00000166573				72	0	0	50	19	27.5362
ANGPTL6	0	genome.wustl.edu	37	19	10204421	10204421	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	10204421	10204421	T	A	SNP	ANGPTL6	ENST00000253109	human	ensembl	74_37	-1	known	missense	c.899	p.Q300L	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL6	HGNC	ENSG00000130812				248	0	0	103	6	5.50459
KEAP1	0	genome.wustl.edu	37	19	10599967	10599967	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	10599967	10599967	A	G	SNP	KEAP1	ENST00000171111	human	ensembl	74_37	-1	known	missense	c.1609	p.Y537H	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999				63	0	0	17	6	26.087
ILF3	0	genome.wustl.edu	37	19	10781711	10781711	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	10781711	10781711	A	G	SNP	ILF3	ENST00000449870	human	ensembl	74_37	+1	known	missense	c.65	p.Y22C	0.999	NULL	pfam_DZF,pfam_dsRNA-bd_dom,smart_DZF,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	ILF3	HGNC	ENSG00000129351				50	0	0	8	9	52.9412
QTRT1	0	genome.wustl.edu	37	19	10823521	10823521	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	10823521	10823521	T	C	SNP	QTRT1	ENST00000250237	human	ensembl	74_37	+1	known	missense	c.949	p.C317R	0.948	pfam_tRNA_ribo_trans-like,superfamily_tRNA_ribo_trans-like,tigrfam_Queuine_tRNA-ribosylTrfase,tigrfam_tRNA_ribo_trans-like	pfam_tRNA_ribo_trans-like,superfamily_tRNA_ribo_trans-like,tigrfam_Queuine_tRNA-ribosylTrfase,tigrfam_tRNA_ribo_trans-like	-	no_errors	QTRT1	HGNC	ENSG00000213339				205	0	0	79	6	7.05882
DOCK6	0	genome.wustl.edu	37	19	11363591	11363591	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	11363591	11363591	A	G	SNP	DOCK6	ENST00000294618	human	ensembl	74_37	-1	known	missense	c.176	p.V59A	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N	-	no_errors	DOCK6	HGNC	ENSG00000130158				38	0	0	13	6	31.5789
ZNF442	0	genome.wustl.edu	37	19	12461809	12461809	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	12461809	12461809	C	T	SNP	ZNF442	ENST00000242804	human	ensembl	74_37	-1	known	missense	c.590	p.R197Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF442	HGNC	ENSG00000198342				227	0	0	129	57	30.6452
ZNF799	0	genome.wustl.edu	37	19	12502011	12502011	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	12502011	12502011	C	G	SNP	ZNF799	ENST00000430385	human	ensembl	74_37	-1	known	missense	c.1201	p.A401P	0.280	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466				259	0	0	150	81	35.0649
MIDN	0	genome.wustl.edu	37	19	1254309	1254309	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	1254309	1254309	T	C	SNP	MIDN	ENST00000300952	human	ensembl	74_37	+1	known	silent	c.528	p.A176	0.083	NULL	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	MIDN	HGNC	ENSG00000167470				16	0	0	6	5	45.4545
BEST2	0	genome.wustl.edu	37	19	12866252	12866252	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	12866252	12866252	A	G	SNP	BEST2	ENST00000042931	human	ensembl	74_37	+1	known	silent	c.696	p.V232	0.083	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST2	HGNC	ENSG00000039987				104	0	0	43	29	40.2778
PRDX2	0	genome.wustl.edu	37	19	12911784	12911784	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	12911784	12911784	A	G	SNP	PRDX2	ENST00000301522	human	ensembl	74_37	-1	known	missense	c.203	p.L68P	1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX2	HGNC	ENSG00000167815				55	0	0	16	6	27.2727
CACNA1A	0	genome.wustl.edu	37	19	13410047	13410047	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	13410047	13410047	G	A	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	silent	c.2400	p.D800	0.846	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				138	0	0	55	18	24.6575
EMR2	0	genome.wustl.edu	37	19	14883284	14883284	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	14883284	14883284	C	A	SNP	EMR2	ENST00000315576	human	ensembl	74_37	-1	known	silent	c.225	p.S75	0.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR2	HGNC	ENSG00000127507				67	0	0	45	30	40
SYDE1	0	genome.wustl.edu	37	19	15221521	15221521	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	15221521	15221521	G	T	SNP	SYDE1	ENST00000342784	human	ensembl	74_37	+1	known	missense	c.1265	p.G422V	0.086	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137				9	0	0	3	2	40
ILVBL	0	genome.wustl.edu	37	19	15234227	15234227	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	15234227	15234227	A	G	SNP	ILVBL	ENST00000263383	human	ensembl	74_37	-1	known	missense	c.296	p.V99A	1.000	pfam_Thiamin_PyroP_enz_TPP-bd_dom	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_TPP_enzyme-bd_C,pfam_Thiamin_PyroP_enz_cen_dom	-	no_errors	ILVBL	HGNC	ENSG00000105135				122	0	0	63	4	5.97015
BRD4	0	genome.wustl.edu	37	19	15366362	15366362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	15366362	15366362	G	A	SNP	BRD4	ENST00000263377	human	ensembl	74_37	-1	known	missense	c.1793	p.T598M	0.007	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				232	0	0	111	6	5.12821
AKAP8	0	genome.wustl.edu	37	19	15483910	15483910	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	15483910	15483910	T	C	SNP	AKAP8	ENST00000269701	human	ensembl	74_37	-1	known	missense	c.613	p.M205V	0.916	NULL	pfam_AKAP95	-	no_errors	AKAP8	HGNC	ENSG00000105127				35	0	0	18	12	40
CYP4F3	0	genome.wustl.edu	37	19	15770043	15770043	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	15770043	15770043	C	A	SNP	CYP4F3	ENST00000221307	human	ensembl	74_37	+1	known	missense	c.1411	p.Q471K	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F3	HGNC	ENSG00000186529				63	0	0	22	8	26.6667
CYP4F2	0	genome.wustl.edu	37	19	15989733	15989733	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	15989733	15989733	G	T	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	missense	c.1411	p.Q471K	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115				89	0	0	38	4	9.52381
CYP4F2	0	genome.wustl.edu	37	19	16000481	16000481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	16000481	16000481	C	T	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	missense	c.670	p.A224T	0.759	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115				263	0	0	98	42	30
CYP4F11	0	genome.wustl.edu	37	19	16025591	16025591	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	16025591	16025591	G	A	SNP	CYP4F11	ENST00000248041	human	ensembl	74_37	-1	known	silent	c.1230	p.D410	0.031	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903				165	0	0	64	29	31.1828
TCF3	0	genome.wustl.edu	37	19	1612274	1612274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	1612274	1612274	G	A	SNP	TCF3	ENST00000344749	human	ensembl	74_37	-1	known	missense	c.1745	p.A582V	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF3	HGNC	ENSG00000071564				88	0	0	39	11	22
SIN3B	0	genome.wustl.edu	37	19	16989392	16989392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	16989392	16989392	G	A	SNP	SIN3B	ENST00000379803	human	ensembl	74_37	+1	known	missense	c.3343	p.A1115T	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3B	HGNC	ENSG00000127511				37	0	0	5	7	58.3333
PIK3R2	0	genome.wustl.edu	37	19	18277087	18277087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	18277087	18277087	G	A	SNP	PIK3R2	ENST00000222254	human	ensembl	74_37	+1	known	missense	c.1534	p.E512K	0.998	prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R2	HGNC	ENSG00000105647				81	0	0	29	15	34.0909
MPV17L2	0	genome.wustl.edu	37	19	18304193	18304193	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	18304193	18304193	C	A	SNP	MPV17L2	ENST00000599612	human	ensembl	74_37	+1	known	silent	c.102	p.G34	0.897	NULL	pfam_Mpv17_PMP22	-	no_errors	MPV17L2	HGNC	ENSG00000254858				18	0	0	4	2	33.3333
LRRC25	0	genome.wustl.edu	37	19	18507103	18507103	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	18507103	18507103	C	A	SNP	LRRC25	ENST00000339007	human	ensembl	74_37	-1	known	missense	c.671	p.R224L	0.680	NULL	NULL	-	no_errors	LRRC25	HGNC	ENSG00000175489				110	0	0	34	20	37.037
ELL	0	genome.wustl.edu	37	19	18561504	18561504	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	18561504	18561504	C	T	SNP	ELL	ENST00000262809	human	ensembl	74_37	-1	known	silent	c.1248	p.A416	0.000	NULL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL	HGNC	ENSG00000105656				11	0	0	6	3	33.3333
UBA52	0	genome.wustl.edu	37	19	18684198	18684198	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	18684198	18684198	A	T	SNP	UBA52	ENST00000430157	human	ensembl	74_37	+1	known	missense	c.88	p.I30F	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	pfam_Ubiquitin_dom,pfam_Ribosomal_L40e,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBA52	HGNC	ENSG00000221983				59	0	0	45	4	8.16327
ARMC6	0	genome.wustl.edu	37	19	19166111	19166111	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	19166111	19166111	T	C	SNP	ARMC6	ENST00000392336	human	ensembl	74_37	+1	known	missense	c.1061	p.I354T	0.996	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC6	HGNC	ENSG00000105676				129	0	0	82	7	7.86517
ZNF506	0	genome.wustl.edu	37	19	19905493	19905493	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	19905493	19905493	T	C	SNP	ZNF506	ENST00000443905	human	ensembl	74_37	-1	known	silent	c.1203	p.E401	0.140	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF506	HGNC	ENSG00000081665				102	0	0	67	6	8.21918
ZNF430	0	genome.wustl.edu	37	19	21203611	21203611	+	Splice_Site	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	21203611	21203611	T	C	SNP	ZNF430	ENST00000261560	human	ensembl	74_37	+1	known	splice_site	c.3+2	e1+2	0.060	-	-	-	no_errors	ZNF430	HGNC	ENSG00000118620				227	0	0	89	37	29.3651
ZNF429	0	genome.wustl.edu	37	19	21720712	21720712	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	21720712	21720712	A	G	SNP	ZNF429	ENST00000358491	human	ensembl	74_37	+1	novel	silent	c.1857	p.K619	0.304	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013				127	0	0	52	11	17.4603
ZNF208	0	genome.wustl.edu	37	19	22154210	22154210	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	22154210	22154210	G	A	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.3626	p.P1209L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				96	0	0	58	17	22.6667
ZNF208	0	genome.wustl.edu	37	19	22157496	22157496	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	22157496	22157496	T	G	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.340	p.K114Q	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				132	0	0	68	29	29.8969
WDR88	0	genome.wustl.edu	37	19	33663258	33663258	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	33663258	33663258	G	T	SNP	WDR88	ENST00000355868	human	ensembl	74_37	+1	known	missense	c.1154	p.R385M	0.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_PQQ_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_PQQ_beta_propeller_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR88	HGNC	ENSG00000166359				151	0	0	48	17	26.1538
RBM42	0	genome.wustl.edu	37	19	36128416	36128416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	36128416	36128416	G	A	SNP	RBM42	ENST00000262633	human	ensembl	74_37	+1	known	missense	c.1403	p.R468H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254				89	0	0	31	19	38
APLP1	0	genome.wustl.edu	37	19	36370291	36370291	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	36370291	36370291	A	G	SNP	APLP1	ENST00000221891	human	ensembl	74_37	+1	known	missense	c.1904	p.Q635R	1.000	pfam_APP_amyloid_C,prints_Amyloid_glyco	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290				181	0	0	62	23	27.0588
HKR1	0	genome.wustl.edu	37	19	37853830	37853830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	37853830	37853830	C	T	SNP	HKR1	ENST00000324411	human	ensembl	74_37	+1	known	missense	c.1133	p.A378V	0.118	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	HKR1	HGNC	ENSG00000181666				169	0	0	94	41	30.3704
SIPA1L3	0	genome.wustl.edu	37	19	38652962	38652962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	38652962	38652962	C	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.3731	p.P1244L	0.150	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				93	0	0	39	15	27.7778
SIPA1L3	0	genome.wustl.edu	37	19	38692591	38692591	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	38692591	38692591	A	G	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.5074	p.S1692G	1.000	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				106	0	0	41	12	22.6415
ACTN4	0	genome.wustl.edu	37	19	39207889	39207889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	39207889	39207889	C	T	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	missense	c.1076	p.T359M	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN4	HGNC	ENSG00000130402				96	0	0	22	12	35.2941
LGALS16	0	genome.wustl.edu	37	19	40149189	40149189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	40149189	40149189	G	A	SNP	LGALS16	ENST00000392051	human	ensembl	74_37	+1	known	missense	c.182	p.R61H	0.001	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS16	HGNC	ENSG00000249861				41	0	0	16	6	27.2727
FCGBP	0	genome.wustl.edu	37	19	40366349	40366349	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	40366349	40366349	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.13885	p.G4629R	0.000	smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				147	0	0	57	29	33.7209
FCGBP	0	genome.wustl.edu	37	19	40389699	40389699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	40389699	40389699	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.8483	p.G2828E	0.000	smart_VWC_out,smart_VWF_C,smart_Fol_N	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				63	0	0	11	5	31.25
FCGBP	0	genome.wustl.edu	37	19	40398082	40398082	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	40398082	40398082	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	silent	c.6885	p.D2295	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				60	0	0	50	10	16.6667
FCGBP	0	genome.wustl.edu	37	19	40421304	40421304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	40421304	40421304	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.2617	p.V873M	0.625	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				27	0	0	8	7	46.6667
ZBTB7A	0	genome.wustl.edu	37	19	4048234	4048234	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	4048234	4048234	T	G	SNP	ZBTB7A	ENST00000322357	human	ensembl	74_37	-1	known	missense	c.1271	p.K424T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7A	HGNC	ENSG00000178951				60	0	0	23	14	37.8378
MAP2K2	0	genome.wustl.edu	37	19	4099311	4099311	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	4099311	4099311	C	T	SNP	MAP2K2	ENST00000262948	human	ensembl	74_37	-1	known	silent	c.807	p.P269	0.709	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K2	HGNC	ENSG00000126934				18	0	0	10	5	33.3333
SPTBN4	0	genome.wustl.edu	37	19	41026037	41026037	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	41026037	41026037	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	silent	c.3633	p.A1211	0.067	pirsf_Spectrin_bsu,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				34	0	0	11	6	35.2941
CYP2B6	0	genome.wustl.edu	37	19	41510286	41510286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	41510286	41510286	G	A	SNP	CYP2B6	ENST00000324071	human	ensembl	74_37	+1	known	missense	c.419	p.R140Q	0.310	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2A-like	-	no_errors	CYP2B6	HGNC	ENSG00000197408				47	0	0	23	10	30.303
AXL	0	genome.wustl.edu	37	19	41726645	41726645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	41726645	41726645	C	T	SNP	AXL	ENST00000301178	human	ensembl	74_37	+1	known	missense	c.190	p.P64S	0.998	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601				41	0	0	22	7	24.1379
LYPD4	0	genome.wustl.edu	37	19	42342319	42342319	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	42342319	42342319	A	G	SNP	LYPD4	ENST00000330743	human	ensembl	74_37	-1	known	silent	c.228	p.V76	0.472	NULL	pfam_LY6_UPAR	-	no_errors	LYPD4	HGNC	ENSG00000183103				75	0	0	33	3	8.33333
ARHGEF1	0	genome.wustl.edu	37	19	42402713	42402713	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	42402713	42402713	T	C	SNP	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	missense	c.1289	p.V430A	1.000	superfamily_DH-domain	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928				12	0	0	3	5	62.5
ZNF574	0	genome.wustl.edu	37	19	42584319	42584319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	42584319	42584319	C	T	SNP	ZNF574	ENST00000222339	human	ensembl	74_37	+1	known	missense	c.1831	p.R611W	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732				589	0	0	204	72	26.087
PSG3	0	genome.wustl.edu	37	19	43236954	43236954	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	43236954	43236954	C	A	SNP	PSG3	ENST00000327495	human	ensembl	74_37	-1	known	missense	c.691	p.V231F	0.856	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG3	HGNC	ENSG00000221826				731	1	0.136612	237	45	15.9574
PSG2	0	genome.wustl.edu	37	19	43579581	43579581	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	43579581	43579581	C	T	SNP	PSG2	ENST00000406487	human	ensembl	74_37	-1	known	missense	c.634	p.A212T	0.002	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG2	HGNC	ENSG00000242221				728	0	0	281	153	35.2535
TEX101	0	genome.wustl.edu	37	19	43922422	43922422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	43922422	43922422	C	T	SNP	TEX101	ENST00000253435	human	ensembl	74_37	+1	known	missense	c.677	p.A226V	0.000	pfam_LY6_UPAR	pfam_LY6_UPAR	-	no_errors	TEX101	HGNC	ENSG00000131126				179	0	0	72	50	40.9836
IRGC	0	genome.wustl.edu	37	19	44222940	44222940	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	44222940	44222940	T	C	SNP	IRGC	ENST00000244314	human	ensembl	74_37	+1	known	missense	c.230	p.L77P	0.076	pfam_Interferon-induced_GTPase,superfamily_P-loop_NTPase	pfam_Interferon-induced_GTPase,superfamily_P-loop_NTPase	-	no_errors	IRGC	HGNC	ENSG00000124449				109	1	0.909091	74	11	12.9412
ZNF226	0	genome.wustl.edu	37	19	44676323	44676323	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	44676323	44676323	A	G	SNP	ZNF226	ENST00000337433	human	ensembl	74_37	+1	known	missense	c.98	p.Y33C	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF226	HGNC	ENSG00000167380				312	0	0	104	49	32.0261
CBLC	0	genome.wustl.edu	37	19	45296747	45296747	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	45296747	45296747	C	T	SNP	CBLC	ENST00000270279	human	ensembl	74_37	+1	known	missense	c.1154	p.T385I	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273				49	0	0	15	4	21.0526
RELB	0	genome.wustl.edu	37	19	45515448	45515448	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	45515448	45515448	T	C	SNP	RELB	ENST00000221452	human	ensembl	74_37	+1	known	missense	c.418	p.F140L	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD,prints_NF_Rel_Dor	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NF_Rel_Dor	-	no_errors	RELB	HGNC	ENSG00000104856				45	0	0	16	5	23.8095
RELB	0	genome.wustl.edu	37	19	45528941	45528941	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	45528941	45528941	C	T	SNP	RELB	ENST00000221452	human	ensembl	74_37	+1	known	nonsense	c.832	p.Q278*	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NF_Rel_Dor	-	no_errors	RELB	HGNC	ENSG00000104856				377	1	0.26455	103	42	28.9655
NKPD1	0	genome.wustl.edu	37	19	45655847	45655847	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	45655847	45655847	G	A	SNP	NKPD1	ENST00000317951	human	ensembl	74_37	-1	known	silent	c.1848	p.P616	0.963	pfam_KAP_NTPase	pfam_KAP_NTPase	-	no_errors	NKPD1	HGNC	ENSG00000179846				23	0	0	8	4	33.3333
FOSB	0	genome.wustl.edu	37	19	45973963	45973963	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	45973963	45973963	A	G	SNP	FOSB	ENST00000353609	human	ensembl	74_37	+1	known	missense	c.203	p.Q68R	1.000	prints_Leuzip_Fos	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSB	HGNC	ENSG00000125740				412	0	0	129	73	36.1386
PPP5C	0	genome.wustl.edu	37	19	46890442	46890442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	46890442	46890442	G	A	SNP	PPP5C	ENST00000012443	human	ensembl	74_37	+1	known	missense	c.997	p.E333K	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,prints_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,pfam_PPP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP5C	HGNC	ENSG00000011485				75	0	0	27	9	25
C5AR1	0	genome.wustl.edu	37	19	47823944	47823944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	47823944	47823944	G	A	SNP	C5AR1	ENST00000355085	human	ensembl	74_37	+1	known	missense	c.910	p.G304S	0.893	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Brdyknn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Anaphtx_C5AR1/C5AR2,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Brdyknn_rcpt,prints_Formyl_pep_rcpt	-	no_errors	C5AR1	HGNC	ENSG00000197405				237	0	0	117	8	6.4
SULT2A1	0	genome.wustl.edu	37	19	48385411	48385411	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	48385411	48385411	C	T	SNP	SULT2A1	ENST00000222002	human	ensembl	74_37	-1	known	nonsense	c.402	p.W134*	0.002	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT2A1	HGNC	ENSG00000105398				176	0	0	71	22	23.6559
PLIN3	0	genome.wustl.edu	37	19	4844784	4844784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	4844784	4844784	C	T	SNP	PLIN3	ENST00000221957	human	ensembl	74_37	-1	known	missense	c.856	p.V286I	0.004	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN3	HGNC	ENSG00000105355				23	0	0	13	5	27.7778
RUVBL2	0	genome.wustl.edu	37	19	49513257	49513257	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	49513257	49513257	G	A	SNP	RUVBL2	ENST00000221413	human	ensembl	74_37	+1	known	missense	c.586	p.G196R	0.012	NULL	pfam_TIP49_C,pfam_DNA_helicase_DnaB-like_C,pfam_ATPase_AAA_core,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase	-	no_errors	RUVBL2	HGNC	ENSG00000183207				124	0	0	47	26	35.6164
HRC	0	genome.wustl.edu	37	19	49658190	49658190	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	49658190	49658190	A	G	SNP	HRC	ENST00000252825	human	ensembl	74_37	-1	known	missense	c.305	p.L102P	0.000	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528				160	0	0	64	41	39.0476
ALDH16A1	0	genome.wustl.edu	37	19	49962308	49962308	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	49962308	49962308	G	A	SNP	ALDH16A1	ENST00000293350	human	ensembl	74_37	+1	known	silent	c.285	p.A95	0.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	-	no_errors	ALDH16A1	HGNC	ENSG00000161618				174	0	0	71	31	30.3922
RRAS	0	genome.wustl.edu	37	19	50140109	50140109	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	50140109	50140109	G	A	SNP	RRAS	ENST00000246792	human	ensembl	74_37	-1	known	silent	c.316	p.L106	0.998	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RRAS	HGNC	ENSG00000126458				173	0	0	39	22	36.0656
SCAF1	0	genome.wustl.edu	37	19	50156621	50156621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	50156621	50156621	C	T	SNP	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	missense	c.2975	p.S992L	0.997	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				16	0	0	2	5	71.4286
PTOV1	0	genome.wustl.edu	37	19	50358291	50358291	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	50358291	50358291	G	A	SNP	PTOV1	ENST00000391842	human	ensembl	74_37	+1	known	missense	c.515	p.C172Y	0.999	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960				21	0	0	5	2	28.5714
NR1H2	0	genome.wustl.edu	37	19	50881507	50881507	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	50881507	50881507	T	C	SNP	NR1H2	ENST00000253727	human	ensembl	74_37	+1	known	missense	c.283	p.S95P	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408				410	1	0.243309	142	67	32.0574
ASPDH	0	genome.wustl.edu	37	19	51017889	51017889	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	51017889	51017889	G	A	SNP	ASPDH	ENST00000597030	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	ASPDH	HGNC	ENSG00000204653				49	0	0	27	13	32.5
KLK10	0	genome.wustl.edu	37	19	51520527	51520527	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	51520527	51520527	G	T	SNP	KLK10	ENST00000309958	human	ensembl	74_37	-1	known	silent	c.108	p.L36	0.687	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK10	HGNC	ENSG00000129451				44	0	0	12	5	29.4118
ETFB	0	genome.wustl.edu	37	19	51853588	51853588	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	51853588	51853588	G	A	SNP	ETFB	ENST00000354232	human	ensembl	74_37	-1	known	missense	c.706	p.P236S	1.000	pfam_ETF_a/b_N,smart_ETF_a/b_N	pfam_ETF_a/b_N,smart_ETF_a/b_N	-	no_errors	ETFB	HGNC	ENSG00000105379				24	0	0	11	4	26.6667
ENSG00000255441	0	genome.wustl.edu	37	19	51919896	51919896	+	RNA	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	51919896	51919896	C	A	SNP	ENSG00000255441	ENST00000526996	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTD-2616J11.2	Clone_based_vega_gene	ENSG00000255441				39	0	0	9	4	30.7692
PTPRS	0	genome.wustl.edu	37	19	5218436	5218436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	5218436	5218436	G	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.4046	p.T1349I	0.999	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				402	0	0	119	60	33.5196
MBOAT7	0	genome.wustl.edu	37	19	54677780	54677780	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	54677780	54677780	G	A	SNP	MBOAT7	ENST00000245615	human	ensembl	74_37	-1	known	silent	c.1377	p.S459	0.339	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT7	HGNC	ENSG00000125505				46	0	0	20	14	41.1765
TSEN34	0	genome.wustl.edu	37	19	54696167	54696167	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	54696167	54696167	C	T	SNP	TSEN34	ENST00000429671	human	ensembl	74_37	+1	known	nonsense	c.688	p.R230*	0.755	pfam_tRNA_intron_Endonuc_cat-like,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN34,tigrfam_tRNA_splic	pfam_tRNA_intron_Endonuc_cat-like,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN34,tigrfam_tRNA_splic	-	no_errors	TSEN34	HGNC	ENSG00000170892				146	0	0	53	38	41.7582
LILRB3	0	genome.wustl.edu	37	19	54726628	54726628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	54726628	54726628	C	T	SNP	LILRB3	ENST00000346401	human	ensembl	74_37	-1	known	missense	c.61	p.V21M	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB3	HGNC	ENSG00000204577				14	0	0	4	3	42.8571
LENG8	0	genome.wustl.edu	37	19	54967856	54967856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	54967856	54967856	C	T	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	missense	c.1487	p.A496V	0.937	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615				40	0	0	10	6	37.5
LILRB1	0	genome.wustl.edu	37	19	55148284	55148284	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	55148284	55148284	C	A	SNP	LILRB1	ENST00000324602	human	ensembl	74_37	+1	known	silent	c.1914	p.P638	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB1	HGNC	ENSG00000104972				124	0	0	47	13	21.6667
NLRP2	0	genome.wustl.edu	37	19	55508826	55508826	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	55508826	55508826	A	G	SNP	NLRP2	ENST00000448584	human	ensembl	74_37	+1	known	silent	c.3021	p.T1007	0.012	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556				243	0	0	107	25	18.9394
ZNF628	0	genome.wustl.edu	37	19	55993117	55993117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	55993117	55993117	C	T	SNP	ZNF628	ENST00000598519	human	ensembl	74_37	+1	known	missense	c.557	p.T186M	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483				39	0	0	13	12	48
ZNF628	0	genome.wustl.edu	37	19	55994462	55994462	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	55994462	55994462	C	T	SNP	ZNF628	ENST00000598519	human	ensembl	74_37	+1	known	silent	c.1902	p.A634	0.904	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483				43	0	0	12	13	52
PEG3	0	genome.wustl.edu	37	19	57327277	57327277	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	57327277	57327277	T	C	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.2533	p.R845G	0.049	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				120	0	0	82	42	33.871
CATSPERD	0	genome.wustl.edu	37	19	5778593	5778593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	5778593	5778593	C	T	SNP	CATSPERD	ENST00000381624	human	ensembl	74_37	+1	known	missense	c.2303	p.T768M	0.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	CATSPERD	HGNC	ENSG00000174898				154	0	0	41	23	35.9375
PRSS57	0	genome.wustl.edu	37	19	685738	685738	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	685738	685738	C	A	SNP	PRSS57	ENST00000329267	human	ensembl	74_37	-1	known	missense	c.830	p.R277M	0.000	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS57	HGNC	ENSG00000185198				14	0	0	0	3	100
PNPLA6	0	genome.wustl.edu	37	19	7619868	7619868	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	7619868	7619868	C	T	SNP	PNPLA6	ENST00000414982	human	ensembl	74_37	+1	known	silent	c.2754	p.T918	0.037	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444				13	0	0	7	4	36.3636
XAB2	0	genome.wustl.edu	37	19	7688074	7688074	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	7688074	7688074	G	A	SNP	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	silent	c.1221	p.D407	0.998	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				162	0	0	53	28	34.5679
LRRC8E	0	genome.wustl.edu	37	19	7960576	7960576	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	7960576	7960576	T	C	SNP	LRRC8E	ENST00000306708	human	ensembl	74_37	+1	known	missense	c.88	p.Y30H	1.000	pfam_LRR_protein-8_N	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017				110	0	0	30	14	31.8182
FBN3	0	genome.wustl.edu	37	19	8188452	8188452	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	8188452	8188452	A	G	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.2978	p.F993S	0.990	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				73	0	0	24	18	42.8571
CERS4	0	genome.wustl.edu	37	19	8326866	8326866	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	8326866	8326866	C	A	SNP	CERS4	ENST00000251363	human	ensembl	74_37	+1	known	missense	c.1058	p.A353E	0.114	pirsf_Longevity_assurance_LAG1_LAC1	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS4	HGNC	ENSG00000090661				93	0	0	24	6	20
PRTN3	0	genome.wustl.edu	37	19	847946	847946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	847946	847946	G	A	SNP	PRTN3	ENST00000234347	human	ensembl	74_37	+1	known	missense	c.748	p.V250M	0.002	NULL	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRTN3	HGNC	ENSG00000196415				9	0	0	10	3	23.0769
MYO1F	0	genome.wustl.edu	37	19	8609293	8609293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	8609293	8609293	G	A	SNP	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	missense	c.1412	p.T471M	0.989	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				69	0	0	16	9	36
MUC16	0	genome.wustl.edu	37	19	9057815	9057815	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	9057815	9057815	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.29631	p.P9877	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				146	0	0	58	49	45.7944
ZNF317	0	genome.wustl.edu	37	19	9271302	9271302	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	9271302	9271302	G	A	SNP	ZNF317	ENST00000247956	human	ensembl	74_37	+1	known	silent	c.981	p.T327	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803				140	0	0	31	18	36.7347
ZNF317	0	genome.wustl.edu	37	19	9271423	9271423	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	9271423	9271423	G	A	SNP	ZNF317	ENST00000247956	human	ensembl	74_37	+1	known	missense	c.1102	p.G368S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803				53	0	0	33	12	26.6667
WDR18	0	genome.wustl.edu	37	19	994293	994293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	994293	994293	C	T	SNP	WDR18	ENST00000251289	human	ensembl	74_37	+1	known	missense	c.1249	p.R417W	0.944	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR18	HGNC	ENSG00000065268				40	0	0	6	4	40
EIF5B	0	genome.wustl.edu	37	2	100006804	100006804	+	Silent	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	100006804	100006804	T	G	SNP	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	silent	c.2526	p.T842	0.771	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				195	0	0	118	53	30.9942
HPCAL1	0	genome.wustl.edu	37	2	10560261	10560261	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	10560261	10560261	G	T	SNP	HPCAL1	ENST00000307845	human	ensembl	74_37	+1	known	missense	c.378	p.Q126H	1.000	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	HPCAL1	HGNC	ENSG00000115756				77	0	0	37	18	32.7273
RANBP2	0	genome.wustl.edu	37	2	109374884	109374884	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	109374884	109374884	T	C	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	silent	c.2482	p.L828	0.973	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				289	0	0	225	12	5.06329
KCNF1	0	genome.wustl.edu	37	2	11053150	11053150	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	11053150	11053150	T	C	SNP	KCNF1	ENST00000295082	human	ensembl	74_37	+1	known	missense	c.598	p.C200R	1.000	prints_K_chnl,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975				65	0	0	30	11	26.8293
KCNF1	0	genome.wustl.edu	37	2	11053256	11053256	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	11053256	11053256	T	C	SNP	KCNF1	ENST00000295082	human	ensembl	74_37	+1	known	missense	c.704	p.L235P	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975				117	0	0	41	18	30.5085
PSD4	0	genome.wustl.edu	37	2	113942987	113942987	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	113942987	113942987	C	T	SNP	PSD4	ENST00000245796	human	ensembl	74_37	+1	known	missense	c.1219	p.P407S	0.066	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD4	HGNC	ENSG00000125637				179	0	0	94	29	23.5772
TSN	0	genome.wustl.edu	37	2	122520638	122520638	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	122520638	122520638	T	C	SNP	TSN	ENST00000389682	human	ensembl	74_37	+1	known	missense	c.431	p.V144A	1.000	pfam_Translin,superfamily_Translin	pfam_Translin,superfamily_Translin	-	no_errors	TSN	HGNC	ENSG00000211460				68	0	0	45	12	21.0526
LIMS2	0	genome.wustl.edu	37	2	128399701	128399701	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	128399701	128399701	C	T	SNP	LIMS2	ENST00000324938	human	ensembl	74_37	-1	known	missense	c.655	p.V219I	0.601	pirsf_PINCH	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS2	HGNC	ENSG00000072163				29	0	0	16	4	20
POTEJ	0	genome.wustl.edu	37	2	131414500	131414500	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	131414500	131414500	A	T	SNP	POTEJ	ENST00000409602	human	ensembl	74_37	+1	novel	missense	c.2167	p.S723C	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEJ	HGNC	ENSG00000222038				122	0	0	45	18	28.5714
MAP3K19	0	genome.wustl.edu	37	2	135738675	135738675	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	135738675	135738675	G	T	SNP	MAP3K19	ENST00000375845	human	ensembl	74_37	-1	known	silent	c.3636	p.A1212	0.993	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K19	HGNC	ENSG00000176601				125	0	0	71	29	29
GALNT5	0	genome.wustl.edu	37	2	158115854	158115854	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	158115854	158115854	G	A	SNP	GALNT5	ENST00000259056	human	ensembl	74_37	+1	known	silent	c.1260	p.T420	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542				118	0	0	56	26	31.7073
TANC1	0	genome.wustl.edu	37	2	160027265	160027265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	160027265	160027265	G	A	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	missense	c.1300	p.G434R	1.000	superfamily_P-loop_NTPase	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				130	0	0	68	21	23.5955
WDSUB1	0	genome.wustl.edu	37	2	160139475	160139475	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	160139475	160139475	G	T	SNP	WDSUB1	ENST00000359774	human	ensembl	74_37	-1	known	missense	c.106	p.L36M	0.893	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Ubox_domain,pfam_SAM_2,pfam_SAM_type1,pfam_Pointed_dom,superfamily_WD40_repeat_dom,superfamily_SAM/pointed,smart_WD40_repeat,smart_SAM,smart_Ubox_domain,pfscan_SAM,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDSUB1	HGNC	ENSG00000196151				136	0	0	63	31	32.9787
BAZ2B	0	genome.wustl.edu	37	2	160243034	160243034	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	160243034	160243034	G	A	SNP	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	nonsense	c.3301	p.R1101*	1.000	pfam_DDT_dom,smart_DDT_dom_subgr,pfscan_DDT_dom_superfamily	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636				158	0	0	66	21	24.1379
LY75	0	genome.wustl.edu	37	2	160714970	160714970	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	160714970	160714970	C	T	SNP	LY75	ENST00000554112	human	ensembl	74_37	-1	known	nonsense	c.2286	p.W762*	0.999	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219				73	0	0	29	16	35.5556
ITGB6	0	genome.wustl.edu	37	2	160993972	160993972	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	160993972	160993972	C	T	SNP	ITGB6	ENST00000283249	human	ensembl	74_37	-1	known	missense	c.1633	p.V545M	0.999	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221				133	0	0	59	31	34.4444
SLC4A10	0	genome.wustl.edu	37	2	162751204	162751204	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	162751204	162751204	G	T	SNP	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	missense	c.1210	p.A404S	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290				56	0	0	37	8	17.7778
PXDN	0	genome.wustl.edu	37	2	1670163	1670163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	1670163	1670163	G	A	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.1114	p.R372W	0.002	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				52	0	0	22	11	33.3333
SCN7A	0	genome.wustl.edu	37	2	167288839	167288839	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	167288839	167288839	C	A	SNP	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	missense	c.2581	p.G861C	0.877	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546				89	0	0	46	32	41.0256
PPIG	0	genome.wustl.edu	37	2	170493131	170493131	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	170493131	170493131	A	G	SNP	PPIG	ENST00000260970	human	ensembl	74_37	+1	known	missense	c.1363	p.R455G	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398				38	0	0	43	4	8.51064
MYO3B	0	genome.wustl.edu	37	2	171258116	171258116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	171258116	171258116	G	A	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	missense	c.2071	p.A691T	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				96	0	0	38	13	25.4902
GAD1	0	genome.wustl.edu	37	2	171700573	171700573	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	171700573	171700573	A	G	SNP	GAD1	ENST00000358196	human	ensembl	74_37	+1	known	silent	c.657	p.A219	0.809	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD1	HGNC	ENSG00000128683				86	0	0	46	16	25.8065
DLX2	0	genome.wustl.edu	37	2	172965365	172965365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	172965365	172965365	G	A	SNP	DLX2	ENST00000234198	human	ensembl	74_37	-1	known	missense	c.893	p.P298L	1.000	NULL	pfam_Homeobox_dom,pfam_Distal-less_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX2	HGNC	ENSG00000115844				48	0	0	15	7	31.8182
SMC6	0	genome.wustl.edu	37	2	17896308	17896308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	17896308	17896308	G	A	SNP	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	missense	c.1628	p.P543L	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				189	0	0	70	29	29.2929
TTN	0	genome.wustl.edu	37	2	179398999	179398999	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	179398999	179398999	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.94639	p.G31547C	1.000	superfamily_Kinase-like_dom,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				150	0	0	89	31	25.8333
TTN	0	genome.wustl.edu	37	2	179422693	179422693	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	179422693	179422693	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.79684	p.I26562V	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				335	0	0	147	90	37.9747
TTN	0	genome.wustl.edu	37	2	179424438	179424438	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	179424438	179424438	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.78717	p.R26239	0.001	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				184	0	0	89	48	35.0365
TTN	0	genome.wustl.edu	37	2	179569069	179569069	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	179569069	179569069	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.26296	p.C8766R	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				176	0	0	153	9	5.55556
TTN	0	genome.wustl.edu	37	2	179623734	179623734	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	179623734	179623734	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.10280	p.S3427N	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				127	0	0	95	5	5
SESTD1	0	genome.wustl.edu	37	2	180008501	180008501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	180008501	180008501	G	A	SNP	SESTD1	ENST00000428443	human	ensembl	74_37	-1	known	missense	c.667	p.R223C	1.000	NULL	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	SESTD1	HGNC	ENSG00000187231				162	0	0	67	33	33
NEUROD1	0	genome.wustl.edu	37	2	182543540	182543540	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	182543540	182543540	G	T	SNP	NEUROD1	ENST00000295108	human	ensembl	74_37	-1	known	silent	c.48	p.P16	1.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD1	HGNC	ENSG00000162992				124	0	0	52	7	11.8644
FRZB	0	genome.wustl.edu	37	2	183730945	183730945	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	183730945	183730945	G	A	SNP	FRZB	ENST00000295113	human	ensembl	74_37	-1	known	silent	c.336	p.C112	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	FRZB	HGNC	ENSG00000162998				57	0	0	31	16	34.0426
SLC40A1	0	genome.wustl.edu	37	2	190428721	190428721	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	190428721	190428721	A	G	SNP	SLC40A1	ENST00000261024	human	ensembl	74_37	-1	known	missense	c.991	p.Y331H	1.000	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC40A1	HGNC	ENSG00000138449				42	0	0	26	20	43.4783
MFSD6	0	genome.wustl.edu	37	2	191301912	191301912	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	191301912	191301912	C	A	SNP	MFSD6	ENST00000281416	human	ensembl	74_37	+1	known	missense	c.1157	p.A386D	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690				69	0	0	36	21	36.8421
STAT1	0	genome.wustl.edu	37	2	191872290	191872290	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	191872290	191872290	T	C	SNP	STAT1	ENST00000361099	human	ensembl	74_37	-1	known	missense	c.371	p.Q124R	1.000	NULL	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT1_TAZ2-bd_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT1	HGNC	ENSG00000115415				110	0	0	42	18	30
STK17B	0	genome.wustl.edu	37	2	197021202	197021202	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	197021202	197021202	A	G	SNP	STK17B	ENST00000263955	human	ensembl	74_37	-1	known	missense	c.296	p.V99A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK17B	HGNC	ENSG00000081320				64	0	0	46	5	9.80392
CCDC150	0	genome.wustl.edu	37	2	197576930	197576930	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	197576930	197576930	A	G	SNP	CCDC150	ENST00000389175	human	ensembl	74_37	+1	known	missense	c.1757	p.D586G	1.000	NULL	NULL	-	no_errors	CCDC150	HGNC	ENSG00000144395				18	0	0	5	2	28.5714
PARD3B	0	genome.wustl.edu	37	2	206165331	206165331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	206165331	206165331	G	A	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	missense	c.2263	p.A755T	0.999	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				202	1	0.492611	84	39	31.7073
PIKFYVE	0	genome.wustl.edu	37	2	209195290	209195290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	209195290	209195290	G	A	SNP	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	missense	c.3835	p.V1279I	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020				419	0	0	234	127	35.1801
ERBB4	0	genome.wustl.edu	37	2	212251706	212251706	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	212251706	212251706	T	C	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.3353	p.H1118R	0.012	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				142	0	0	71	26	26.8041
IKZF2	0	genome.wustl.edu	37	2	213872632	213872632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	213872632	213872632	C	T	SNP	IKZF2	ENST00000434687	human	ensembl	74_37	-1	known	missense	c.1033	p.A345T	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF2	HGNC	ENSG00000030419				88	0	0	37	13	26
TNS1	0	genome.wustl.edu	37	2	218762539	218762539	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	218762539	218762539	T	C	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	silent	c.150	p.K50	0.990	pfscan_Phosphatase_tensin-typ	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				114	0	0	43	12	21.8182
CXCR1	0	genome.wustl.edu	37	2	219029127	219029127	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	219029127	219029127	T	C	SNP	CXCR1	ENST00000295683	human	ensembl	74_37	-1	known	missense	c.808	p.T270A	0.209	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR_1/2	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR_1/2,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR1,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR1	HGNC	ENSG00000163464				149	0	0	73	40	35.3982
USP37	0	genome.wustl.edu	37	2	219411727	219411727	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	219411727	219411727	T	C	SNP	USP37	ENST00000258399	human	ensembl	74_37	-1	known	missense	c.517	p.T173A	0.995	NULL	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP37	HGNC	ENSG00000135913				187	0	0	52	36	40.9091
RQCD1	0	genome.wustl.edu	37	2	219445338	219445338	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	219445338	219445338	A	G	SNP	RQCD1	ENST00000509807	human	ensembl	74_37	+1	known	missense	c.79	p.N27D	1.000	pfam_Rcd1	pfam_Rcd1,superfamily_ARM-type_fold	-	no_errors	RQCD1	HGNC	ENSG00000144580				81	0	0	54	19	26.0274
ZNF142	0	genome.wustl.edu	37	2	219508243	219508243	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	219508243	219508243	T	C	SNP	ZNF142	ENST00000411696	human	ensembl	74_37	-1	known	missense	c.2996	p.H999R	0.202	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568				153	1	0.649351	73	27	27
IRS1	0	genome.wustl.edu	37	2	227660074	227660074	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	227660074	227660074	G	A	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	silent	c.3381	p.G1127	0.001	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				82	0	0	44	23	34.3284
COL4A4	0	genome.wustl.edu	37	2	227920728	227920728	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	227920728	227920728	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	74_37	-1	known	silent	c.2649	p.P883	0.033	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052				108	0	0	33	19	36.5385
ARMC9	0	genome.wustl.edu	37	2	232091513	232091513	+	Splice_Site	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	232091513	232091513	T	C	SNP	ARMC9	ENST00000349938	human	ensembl	74_37	+1	known	splice_site	c.622+2	e6+2	1.000	-	-	-	no_errors	ARMC9	HGNC	ENSG00000135931				94	0	0	48	17	26.1538
NCL	0	genome.wustl.edu	37	2	232325259	232325259	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	232325259	232325259	T	C	SNP	NCL	ENST00000322723	human	ensembl	74_37	-1	known	silent	c.828	p.A276	0.523	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053				218	0	0	108	56	34.1463
DIS3L2	0	genome.wustl.edu	37	2	233199154	233199154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	233199154	233199154	C	T	SNP	DIS3L2	ENST00000325385	human	ensembl	74_37	+1	known	missense	c.2234	p.A745V	0.947	NULL	NULL	-	no_errors	DIS3L2	HGNC	ENSG00000144535				74	0	0	32	9	21.9512
ALPP	0	genome.wustl.edu	37	2	233244487	233244487	+	Silent	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	233244487	233244487	A	C	SNP	ALPP	ENST00000392027	human	ensembl	74_37	+1	known	silent	c.498	p.G166	0.856	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPP	HGNC	ENSG00000163283				70	0	0	32	10	23.8095
GIGYF2	0	genome.wustl.edu	37	2	233599897	233599897	+	RNA	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	233599897	233599897	T	G	SNP	GIGYF2	ENST00000463554	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.975	-	-	-	no_errors	GIGYF2	HGNC	ENSG00000204120				36	0	0	17	7	29.1667
COL6A3	0	genome.wustl.edu	37	2	238249716	238249716	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	238249716	238249716	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.7843	p.D2615N	0.884	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				370	0	0	97	64	39.7516
HDAC4	0	genome.wustl.edu	37	2	240033383	240033383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	240033383	240033383	C	T	SNP	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	missense	c.1802	p.R601Q	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024				17	0	0	10	5	33.3333
C2orf54	0	genome.wustl.edu	37	2	241835242	241835242	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	241835242	241835242	A	C	SNP	C2orf54	ENST00000388934	human	ensembl	74_37	-1	known	missense	c.173	p.I58S	0.023	NULL	NULL	-	no_errors	C2orf54	HGNC	ENSG00000172478				81	0	0	28	12	30
SNED1	0	genome.wustl.edu	37	2	241969712	241969712	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	241969712	241969712	C	T	SNP	SNED1	ENST00000310397	human	ensembl	74_37	+1	known	silent	c.225	p.N75	0.748	NULL	pfam_EG-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_Fibronectin_type3,superfamily_Sushi_SCR_CCP,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804				24	0	0	3	6	66.6667
KCNK3	0	genome.wustl.edu	37	2	26950859	26950859	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	26950859	26950859	G	A	SNP	KCNK3	ENST00000302909	human	ensembl	74_37	+1	known	missense	c.608	p.G203D	1.000	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK3	HGNC	ENSG00000171303				82	0	0	25	19	43.1818
CAD	0	genome.wustl.edu	37	2	27458431	27458431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	27458431	27458431	C	T	SNP	CAD	ENST00000264705	human	ensembl	74_37	+1	known	missense	c.3997	p.R1333W	1.000	pfam_MGS-like_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf	-	no_errors	CAD	HGNC	ENSG00000084774				184	0	0	59	27	31.3953
GTF3C2	0	genome.wustl.edu	37	2	27558811	27558811	+	Silent	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	27558811	27558811	T	A	SNP	GTF3C2	ENST00000264720	human	ensembl	74_37	-1	known	silent	c.1440	p.A480	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GTF3C2	HGNC	ENSG00000115207				90	0	0	23	10	30.303
ADI1	0	genome.wustl.edu	37	2	3502771	3502771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	3502771	3502771	C	T	SNP	ADI1	ENST00000327435	human	ensembl	74_37	-1	known	missense	c.503	p.R168H	0.997	superfamily_RmlC_Cupin	pfam_Acireductn_dOase_family,pfam_Cupin_2,pfam_AraC-bd,superfamily_RmlC_Cupin	-	no_errors	ADI1	HGNC	ENSG00000182551				96	0	0	37	14	27.451
CRIM1	0	genome.wustl.edu	37	2	36583582	36583582	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	36583582	36583582	G	A	SNP	CRIM1	ENST00000280527	human	ensembl	74_37	+1	known	silent	c.147	p.R49	1.000	smart_IGFBP-like	pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938				45	0	0	12	7	36.8421
VIT	0	genome.wustl.edu	37	2	36970398	36970398	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	36970398	36970398	A	C	SNP	VIT	ENST00000379242	human	ensembl	74_37	+1	known	missense	c.274	p.S92R	1.000	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221				67	0	0	52	5	8.77193
HEATR5B	0	genome.wustl.edu	37	2	37284574	37284574	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	37284574	37284574	A	G	SNP	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	silent	c.2109	p.T703	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				72	0	0	39	3	7.14286
PRKD3	0	genome.wustl.edu	37	2	37516634	37516634	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	37516634	37516634	T	C	SNP	PRKD3	ENST00000234179	human	ensembl	74_37	-1	known	silent	c.582	p.K194	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825				112	0	0	40	27	40.2985
ATL2	0	genome.wustl.edu	37	2	38525369	38525369	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	38525369	38525369	T	C	SNP	ATL2	ENST00000378954	human	ensembl	74_37	-1	known	missense	c.1549	p.T517A	1.000	NULL	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_P-loop_NTPase,superfamily_Guanylate-bd_C	-	no_errors	ATL2	HGNC	ENSG00000119787				109	0	0	64	23	26.4368
PKDCC	0	genome.wustl.edu	37	2	42280472	42280472	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	42280472	42280472	C	T	SNP	PKDCC	ENST00000294964	human	ensembl	74_37	+1	known	silent	c.733	p.L245	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	PKDCC	HGNC	ENSG00000162878				225	0	0	66	37	35.9223
PLEKHH2	0	genome.wustl.edu	37	2	43970051	43970051	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	43970051	43970051	A	G	SNP	PLEKHH2	ENST00000282406	human	ensembl	74_37	+1	known	missense	c.3393	p.I1131M	0.848	smart_Band_41_domain,pfscan_FERM_domain	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527				95	0	0	55	24	30.3797
SIX3	0	genome.wustl.edu	37	2	45169340	45169340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	45169340	45169340	G	A	SNP	SIX3	ENST00000260653	human	ensembl	74_37	+1	known	missense	c.97	p.G33S	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX3	HGNC	ENSG00000138083				110	0	0	50	38	43.1818
FBXO11	0	genome.wustl.edu	37	2	48035303	48035303	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	48035303	48035303	T	C	SNP	FBXO11	ENST00000403359	human	ensembl	74_37	-1	known	missense	c.2738	p.Y913C	1.000	NULL	pfam_Znf_N-recognin,pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081				257	0	0	124	62	33.3333
NRXN1	0	genome.wustl.edu	37	2	50280668	50280668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	50280668	50280668	C	T	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.3845	p.G1282D	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				154	0	0	78	15	16.129
NRXN1	0	genome.wustl.edu	37	2	51255157	51255157	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	51255157	51255157	G	A	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.255	p.R85	0.769	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				33	0	0	16	12	42.8571
RTN4	0	genome.wustl.edu	37	2	55252719	55252719	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	55252719	55252719	A	G	SNP	RTN4	ENST00000337526	human	ensembl	74_37	-1	known	missense	c.2516	p.V839A	0.017	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN4	HGNC	ENSG00000115310				100	0	0	85	10	10.5263
PAPOLG	0	genome.wustl.edu	37	2	60983631	60983631	+	Splice_Site	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	60983631	60983631	G	A	SNP	PAPOLG	ENST00000238714	human	ensembl	74_37	+1	known	splice_site	c.17+1	e1+1	1.000	-	-	-	no_errors	PAPOLG	HGNC	ENSG00000115421				96	0	0	16	12	42.8571
CCT4	0	genome.wustl.edu	37	2	62110669	62110669	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	62110669	62110669	T	C	SNP	CCT4	ENST00000394440	human	ensembl	74_37	-1	known	silent	c.195	p.K65	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_delta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_delta	-	no_errors	CCT4	HGNC	ENSG00000115484				35	0	0	21	11	34.375
AFTPH	0	genome.wustl.edu	37	2	64779519	64779519	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	64779519	64779519	T	C	SNP	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	missense	c.911	p.I304T	0.000	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				161	0	0	74	40	35.0877
MEIS1	0	genome.wustl.edu	37	2	66798628	66798628	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	66798628	66798628	G	T	SNP	MEIS1	ENST00000407092	human	ensembl	74_37	+1	known	missense	c.1365	p.M455I	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS1	HGNC	ENSG00000143995				24	0	0	4	3	42.8571
CYP26B1	0	genome.wustl.edu	37	2	72359391	72359391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	72359391	72359391	G	A	SNP	CYP26B1	ENST00000001146	human	ensembl	74_37	-1	known	missense	c.1504	p.P502S	1.000	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP26B1	HGNC	ENSG00000003137				17	0	0	4	5	55.5556
C2orf78	0	genome.wustl.edu	37	2	74043234	74043234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	74043234	74043234	G	A	SNP	C2orf78	ENST00000409561	human	ensembl	74_37	+1	novel	missense	c.1884	p.M628I	0.997	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833				135	0	0	37	22	37.2881
CTNNA2	0	genome.wustl.edu	37	2	80136836	80136836	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	80136836	80136836	G	A	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	silent	c.1071	p.T357	0.007	pfam_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				154	0	0	55	31	36.0465
LRRTM1	0	genome.wustl.edu	37	2	80529715	80529715	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	80529715	80529715	G	A	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	silent	c.1230	p.T410	0.146	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				75	0	0	47	5	9.61538
TGOLN2	0	genome.wustl.edu	37	2	85554313	85554313	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	85554313	85554313	T	C	SNP	TGOLN2	ENST00000377386	human	ensembl	74_37	-1	known	missense	c.542	p.K181R	0.000	NULL	NULL	-	no_errors	TGOLN2	HGNC	ENSG00000152291				937	1	0.10661	568	40	6.57895
MAT2A	0	genome.wustl.edu	37	2	85769744	85769744	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	85769744	85769744	T	C	SNP	MAT2A	ENST00000306434	human	ensembl	74_37	+1	known	silent	c.825	p.G275	1.000	pfam_S-AdoMet_synt_C,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	-	no_errors	MAT2A	HGNC	ENSG00000168906				61	0	0	46	12	20.6897
ANKRD20A8P	0	genome.wustl.edu	37	2	95513778	95513778	+	RNA	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	95513778	95513778	A	T	SNP	ANKRD20A8P	ENST00000432432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKRD20A8P	HGNC	ENSG00000229089				651	0	0	431	128	22.898
CNNM4	0	genome.wustl.edu	37	2	97474358	97474358	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	97474358	97474358	G	A	SNP	CNNM4	ENST00000377075	human	ensembl	74_37	+1	known	missense	c.2009	p.R670H	0.987	superfamily_cNMP-bd-like	pfam_DUF21,pfam_CBS_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNNM4	HGNC	ENSG00000158158				116	1	0.854701	40	16	28.5714
TMEM131	0	genome.wustl.edu	37	2	98411544	98411544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	98411544	98411544	G	A	SNP	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	missense	c.3235	p.R1079W	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				81	0	0	36	16	30.7692
SDCBP2	0	genome.wustl.edu	37	20	1298987	1298987	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	1298987	1298987	A	C	SNP	SDCBP2	ENST00000339987	human	ensembl	74_37	-1	known	missense	c.200	p.L67R	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP2	HGNC	ENSG00000125775				156	0	0	60	28	31.8182
SIRPG	0	genome.wustl.edu	37	20	1616978	1616978	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	1616978	1616978	T	C	SNP	SIRPG	ENST00000303415	human	ensembl	74_37	-1	known	missense	c.604	p.S202G	0.002	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPG	HGNC	ENSG00000089012				185	0	0	60	48	44.4444
SIRPG	0	genome.wustl.edu	37	20	1629991	1629991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	1629991	1629991	C	T	SNP	SIRPG	ENST00000303415	human	ensembl	74_37	-1	known	missense	c.137	p.G46E	0.069	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPG	HGNC	ENSG00000089012				105	0	0	65	30	31.5789
KIF16B	0	genome.wustl.edu	37	20	16360087	16360087	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	16360087	16360087	C	G	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	missense	c.2560	p.V854L	0.957	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				238	0	0	155	10	6.06061
RRBP1	0	genome.wustl.edu	37	20	17640875	17640875	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	17640875	17640875	G	C	SNP	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	missense	c.278	p.T93S	0.396	pfam_Rib_rcpt_KP	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844				29	0	0	14	7	33.3333
C20orf26	0	genome.wustl.edu	37	20	20144799	20144799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	20144799	20144799	C	T	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	missense	c.1132	p.R378C	1.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				146	0	0	63	33	34.375
RALGAPA2	0	genome.wustl.edu	37	20	20552182	20552182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	20552182	20552182	G	A	SNP	RALGAPA2	ENST00000202677	human	ensembl	74_37	-1	known	missense	c.3076	p.R1026C	1.000	superfamily_ARM-type_fold	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA2	HGNC	ENSG00000188559				45	0	0	17	14	45.1613
CST2	0	genome.wustl.edu	37	20	23805952	23805952	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	23805952	23805952	G	A	SNP	CST2	ENST00000304725	human	ensembl	74_37	-1	known	silent	c.237	p.G79	0.010	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST2	HGNC	ENSG00000170369				221	0	0	128	18	12.3288
ZNF343	0	genome.wustl.edu	37	20	2465247	2465247	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	2465247	2465247	A	G	SNP	ZNF343	ENST00000278772	human	ensembl	74_37	-1	known	silent	c.360	p.C120	0.992	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF343	HGNC	ENSG00000088876				143	0	0	62	22	26.1905
ACSS1	0	genome.wustl.edu	37	20	24988531	24988531	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	24988531	24988531	C	T	SNP	ACSS1	ENST00000323482	human	ensembl	74_37	-1	known	missense	c.1937	p.R646Q	1.000	tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930				97	0	0	47	25	34.7222
NOP56	0	genome.wustl.edu	37	20	2633534	2633534	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	2633534	2633534	T	G	SNP	NOP56	ENST00000329276	human	ensembl	74_37	+1	known	missense	c.50	p.L17R	1.000	pfam_NOP5_N	pfam_Nop_dom,pfam_NOSIC,pfam_NOP5_N,smart_NOSIC	-	no_errors	NOP56	HGNC	ENSG00000101361				34	0	0	9	2	18.1818
TPX2	0	genome.wustl.edu	37	20	30370194	30370194	+	Splice_Site	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	30370194	30370194	G	A	SNP	TPX2	ENST00000340513	human	ensembl	74_37	+1	known	splice_site	c.1304+1	e10+1	1.000	-	-	-	no_errors	TPX2	HGNC	ENSG00000088325				134	0	0	50	32	39.0244
DDRGK1	0	genome.wustl.edu	37	20	3171871	3171871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	3171871	3171871	C	T	SNP	DDRGK1	ENST00000354488	human	ensembl	74_37	-1	known	missense	c.743	p.R248H	1.000	pfam_DDRGK_dom-contain	pfam_DDRGK_dom-contain	-	no_errors	DDRGK1	HGNC	ENSG00000198171				49	0	0	24	12	33.3333
ZNF341	0	genome.wustl.edu	37	20	32345064	32345064	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	32345064	32345064	C	T	SNP	ZNF341	ENST00000375200	human	ensembl	74_37	+1	known	silent	c.852	p.S284	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF341	HGNC	ENSG00000131061				300	0	0	115	53	31.5476
PROCR	0	genome.wustl.edu	37	20	33764236	33764236	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	33764236	33764236	G	A	SNP	PROCR	ENST00000216968	human	ensembl	74_37	+1	known	silent	c.588	p.A196	0.000	pfam_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	PROCR	HGNC	ENSG00000101000				168	0	0	68	27	28.4211
MMP24	0	genome.wustl.edu	37	20	33862184	33862184	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	33862184	33862184	C	T	SNP	MMP24	ENST00000246186	human	ensembl	74_37	+1	known	silent	c.1710	p.N570	1.000	pirsf_Pept_M10A_Metazoans	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP24	HGNC	ENSG00000125966				247	0	0	70	39	35.7798
CEP250	0	genome.wustl.edu	37	20	34067191	34067191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	34067191	34067191	C	T	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.2230	p.R744W	0.998	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				293	0	0	103	37	26.4286
DLGAP4	0	genome.wustl.edu	37	20	35060903	35060903	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	35060903	35060903	T	C	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	silent	c.783	p.T261	0.434	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				101	0	0	62	5	7.46269
NDRG3	0	genome.wustl.edu	37	20	35293701	35293701	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	35293701	35293701	G	A	SNP	NDRG3	ENST00000349004	human	ensembl	74_37	-1	known	silent	c.696	p.R232	1.000	pfam_Ndr,pfam_AB_hydrolase_1	pfam_Ndr,pfam_AB_hydrolase_1	-	no_errors	NDRG3	HGNC	ENSG00000101079				231	0	0	95	63	39.8734
RBL1	0	genome.wustl.edu	37	20	35689518	35689518	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	35689518	35689518	A	G	SNP	RBL1	ENST00000373664	human	ensembl	74_37	-1	known	missense	c.1238	p.I413T	0.775	pfam_RB_A,superfamily_Cyclin-like	pfam_RB_A,pfam_RB_B,pfam_RB_N,pfam_RB_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839				51	0	0	36	15	29.4118
TGM2	0	genome.wustl.edu	37	20	36759566	36759566	+	Silent	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	36759566	36759566	A	C	SNP	TGM2	ENST00000361475	human	ensembl	74_37	-1	known	silent	c.1842	p.P614	0.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959				138	0	0	37	17	31.4815
TOP1	0	genome.wustl.edu	37	20	39726979	39726979	+	Splice_Site	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	39726979	39726979	T	C	SNP	TOP1	ENST00000361337	human	ensembl	74_37	+1	known	splice_site	c.975+2	e11+2	1.000	-	-	-	no_errors	TOP1	HGNC	ENSG00000198900				113	0	0	47	25	34.7222
OSER1	0	genome.wustl.edu	37	20	42826132	42826132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	42826132	42826132	C	T	SNP	OSER1	ENST00000255174	human	ensembl	74_37	-1	known	missense	c.439	p.V147I	0.000	pfam_DUF776	pfam_DUF776	-	no_errors	OSER1	HGNC	ENSG00000132823				163	0	0	73	40	35.3982
HNF4A	0	genome.wustl.edu	37	20	43034754	43034754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	43034754	43034754	G	A	SNP	HNF4A	ENST00000316099	human	ensembl	74_37	+1	known	missense	c.172	p.A58T	0.922	smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076				288	1	0.346021	81	73	47.4026
TTPAL	0	genome.wustl.edu	37	20	43108907	43108907	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	43108907	43108907	T	C	SNP	TTPAL	ENST00000262605	human	ensembl	74_37	+1	known	missense	c.268	p.F90L	1.000	pfam_CRAL/TRIO_N_dom,superfamily_CRAL/TRIO_N_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPAL	HGNC	ENSG00000124120				67	0	0	46	6	11.5385
ADA	0	genome.wustl.edu	37	20	43251662	43251662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	43251662	43251662	C	T	SNP	ADA	ENST00000372874	human	ensembl	74_37	-1	known	missense	c.664	p.E222K	0.000	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	-	no_errors	ADA	HGNC	ENSG00000196839				185	0	0	66	27	29.0323
PABPC1L	0	genome.wustl.edu	37	20	43559190	43559190	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	43559190	43559190	C	T	SNP	PABPC1L	ENST00000217073	human	ensembl	74_37	+1	known	silent	c.1062	p.N354	0.979	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104				438	0	0	137	77	35.9813
KCNS1	0	genome.wustl.edu	37	20	43726483	43726483	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	43726483	43726483	A	G	SNP	KCNS1	ENST00000306117	human	ensembl	74_37	-1	known	silent	c.930	p.I310	0.997	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNS1	HGNC	ENSG00000124134				46	0	0	14	6	30
ZNF335	0	genome.wustl.edu	37	20	44596190	44596190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	44596190	44596190	G	A	SNP	ZNF335	ENST00000322927	human	ensembl	74_37	-1	known	missense	c.898	p.P300S	0.026	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026				123	0	0	55	35	38.8889
ZMYND8	0	genome.wustl.edu	37	20	45865224	45865224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	45865224	45865224	G	A	SNP	ZMYND8	ENST00000536340	human	ensembl	74_37	-1	known	missense	c.2723	p.T908M	1.000	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP_dom,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040				65	0	0	48	23	32.3944
KCNG1	0	genome.wustl.edu	37	20	49626482	49626482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	49626482	49626482	G	A	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	missense	c.394	p.R132C	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				106	0	0	35	28	44.4444
ZNF217	0	genome.wustl.edu	37	20	52199232	52199232	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	52199232	52199232	A	G	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	missense	c.134	p.V45A	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				136	0	0	64	31	32.6316
CSTF1	0	genome.wustl.edu	37	20	54978601	54978601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	54978601	54978601	G	A	SNP	CSTF1	ENST00000217109	human	ensembl	74_37	+1	known	missense	c.1114	p.D372N	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CSTF1	HGNC	ENSG00000101138				100	0	0	45	18	28.5714
ZNF831	0	genome.wustl.edu	37	20	57766849	57766849	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	57766849	57766849	C	T	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	silent	c.775	p.L259	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				147	0	0	49	18	26.8657
LRRN4	0	genome.wustl.edu	37	20	6022558	6022558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	6022558	6022558	C	T	SNP	LRRN4	ENST00000378858	human	ensembl	74_37	-1	known	missense	c.1333	p.V445I	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4	HGNC	ENSG00000125872				138	0	0	51	21	29.1667
HRH3	0	genome.wustl.edu	37	20	60791216	60791216	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	60791216	60791216	T	G	SNP	HRH3	ENST00000317393	human	ensembl	74_37	-1	known	missense	c.1184	p.E395A	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H3_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	-	no_errors	HRH3	HGNC	ENSG00000101180				69	0	0	16	7	30.4348
HRH3	0	genome.wustl.edu	37	20	60794884	60794884	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	60794884	60794884	G	A	SNP	HRH3	ENST00000317393	human	ensembl	74_37	-1	known	missense	c.143	p.T48M	1.000	prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H3_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	-	no_errors	HRH3	HGNC	ENSG00000101180				53	0	0	15	11	42.3077
LAMA5	0	genome.wustl.edu	37	20	60887363	60887363	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	60887363	60887363	C	T	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.9370	p.A3124T	0.015	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				34	0	0	10	5	33.3333
LAMA5	0	genome.wustl.edu	37	20	60904862	60904862	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	60904862	60904862	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.4090	p.R1364C	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				46	0	0	10	10	50
LAMA5	0	genome.wustl.edu	37	20	60927304	60927304	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	60927304	60927304	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	silent	c.681	p.N227	0.186	pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				49	0	0	12	16	57.1429
YTHDF1	0	genome.wustl.edu	37	20	61834233	61834233	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	61834233	61834233	G	A	SNP	YTHDF1	ENST00000370339	human	ensembl	74_37	-1	known	silent	c.1059	p.N353	0.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658				153	0	0	64	38	37.2549
PTK6	0	genome.wustl.edu	37	20	62163960	62163960	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	62163960	62163960	A	G	SNP	PTK6	ENST00000217185	human	ensembl	74_37	-1	known	missense	c.751	p.Y251H	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	PTK6	HGNC	ENSG00000101213				107	0	0	37	16	30.1887
HELZ2	0	genome.wustl.edu	37	20	62194113	62194113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	62194113	62194113	C	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.6062	p.S2021N	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				35	0	0	5	3	37.5
HELZ2	0	genome.wustl.edu	37	20	62194212	62194212	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	62194212	62194212	C	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.5963	p.R1988H	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				43	0	0	5	3	37.5
HELZ2	0	genome.wustl.edu	37	20	62194551	62194551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	62194551	62194551	C	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.5624	p.R1875Q	0.005	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				23	0	0	7	2	22.2222
ZNF512B	0	genome.wustl.edu	37	20	62597930	62597930	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	62597930	62597930	T	C	SNP	ZNF512B	ENST00000217130	human	ensembl	74_37	-1	known	missense	c.598	p.I200V	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC	ENSG00000196700				299	0	0	129	60	31.746
TCEA2	0	genome.wustl.edu	37	20	62701181	62701181	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	62701181	62701181	T	G	SNP	TCEA2	ENST00000395053	human	ensembl	74_37	+1	known	missense	c.524	p.L175R	1.000	pirsf_TF_IIS-rel	pfam_TFIIS_N,pfam_TFIIS_cen_dom,superfamily_TFIIS_N,superfamily_TFIIS_cen_dom,smart_TFIIS/CRSP70_N_sub,pirsf_TF_IIS-rel	-	no_errors	TCEA2	HGNC	ENSG00000171703				109	0	0	41	7	14.5833
TMX4	0	genome.wustl.edu	37	20	7990877	7990877	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	7990877	7990877	C	A	SNP	TMX4	ENST00000246024	human	ensembl	74_37	-1	known	missense	c.262	p.V88L	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX4	HGNC	ENSG00000125827				133	0	0	59	18	23.3766
PLCB1	0	genome.wustl.edu	37	20	8628584	8628584	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	8628584	8628584	C	T	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	missense	c.502	p.R168C	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				125	0	0	58	21	26.5823
ADAMTS1	0	genome.wustl.edu	37	21	28213404	28213404	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	28213404	28213404	C	T	SNP	ADAMTS1	ENST00000284984	human	ensembl	74_37	-1	known	missense	c.1291	p.A431T	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734				150	0	0	69	39	36.1111
KRTAP23-1	0	genome.wustl.edu	37	21	31720883	31720883	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	31720883	31720883	G	A	SNP	KRTAP23-1	ENST00000334160	human	ensembl	74_37	-1	known	silent	c.42	p.S14	0.004	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP23-1	HGNC	ENSG00000186980				162	0	0	71	26	26.8041
TIAM1	0	genome.wustl.edu	37	21	32513685	32513685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	32513685	32513685	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.3613	p.A1205T	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				160	0	0	73	33	31.1321
SCAF4	0	genome.wustl.edu	37	21	33074095	33074095	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	33074095	33074095	G	A	SNP	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	silent	c.594	p.G198	0.975	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF4	HGNC	ENSG00000156304				65	0	0	21	6	22.2222
TCP10L	0	genome.wustl.edu	37	21	33951127	33951127	+	Silent	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	33951127	33951127	A	T	SNP	TCP10L	ENST00000300258	human	ensembl	74_37	-1	known	silent	c.375	p.A125	0.008	NULL	NULL	-	no_errors	TCP10L	HGNC	ENSG00000242220				197	0	0	107	21	16.4062
SON	0	genome.wustl.edu	37	21	34922824	34922824	+	Silent	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	34922824	34922824	G	C	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	silent	c.1287	p.G429	1.000	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				115	0	0	47	30	38.961
DONSON	0	genome.wustl.edu	37	21	34951683	34951683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	34951683	34951683	G	A	SNP	DONSON	ENST00000453626	human	ensembl	74_37	-1	putative	missense	c.1391	p.A464V	0.202	NULL	NULL	-	no_errors	DONSON	HGNC	ENSG00000159147				165	0	0	116	10	7.93651
KCNE1	0	genome.wustl.edu	37	21	35821821	35821821	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	35821821	35821821	T	C	SNP	KCNE1	ENST00000337385	human	ensembl	74_37	-1	known	missense	c.112	p.S38G	0.000	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE1	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE1,prints_K_chnl_volt-dep_bsu_KCNE	-	no_errors	KCNE1	HGNC	ENSG00000180509				96	0	0	46	3	6.12245
MORC3	0	genome.wustl.edu	37	21	37709238	37709238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	37709238	37709238	A	G	SNP	MORC3	ENST00000400485	human	ensembl	74_37	+1	known	missense	c.179	p.H60R	0.000	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256				149	0	0	65	28	30.1075
BRWD1	0	genome.wustl.edu	37	21	40570880	40570880	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	40570880	40570880	T	A	SNP	BRWD1	ENST00000333229	human	ensembl	74_37	-1	known	missense	c.5462	p.D1821V	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658				194	0	0	95	63	39.8734
BACE2	0	genome.wustl.edu	37	21	42629207	42629207	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	42629207	42629207	C	T	SNP	BACE2	ENST00000330333	human	ensembl	74_37	+1	known	silent	c.1257	p.F419	0.987	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Pept_A1_BACE,prints_Pept_A1_BACE2,prints_Aspartic_peptidase,prints_Pept_A1_BACE1	-	no_errors	BACE2	HGNC	ENSG00000182240				90	0	0	29	11	27.5
RRP1	0	genome.wustl.edu	37	21	45217542	45217542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	45217542	45217542	G	A	SNP	RRP1	ENST00000497547	human	ensembl	74_37	+1	known	missense	c.583	p.D195N	0.074	pfam_Nop52	pfam_Nop52	-	no_errors	RRP1	HGNC	ENSG00000160214				242	0	0	58	35	37.6344
MCM3AP	0	genome.wustl.edu	37	21	47655291	47655291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	47655291	47655291	C	T	SNP	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	missense	c.5834	p.C1945Y	0.030	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				67	0	0	46	3	6.12245
PRMT2	0	genome.wustl.edu	37	21	48063467	48063467	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	48063467	48063467	C	T	SNP	PRMT2	ENST00000355680	human	ensembl	74_37	+1	known	silent	c.60	p.C20	0.000	superfamily_SH3_domain	pfam_SH3_domain,pfam_Arg_MeTrfase,pfam_SH3_2,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_Trfase_Trm5/Tyw2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PRMT2	HGNC	ENSG00000160310				213	0	0	81	9	10
CECR1	0	genome.wustl.edu	37	22	17690430	17690430	+	Silent	SNP	C	C	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	17690430	17690430	C	G	SNP	CECR1	ENST00000262607	human	ensembl	74_37	-1	known	silent	c.138	p.L46	0.001	pfam_A_deaminase_N,tigrfam_Ad_deam-like	pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like	-	no_errors	CECR1	HGNC	ENSG00000093072				70	0	0	38	6	13.6364
SLC25A1	0	genome.wustl.edu	37	22	19163996	19163996	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	19163996	19163996	C	T	SNP	SLC25A1	ENST00000215882	human	ensembl	74_37	-1	known	silent	c.759	p.A253	0.001	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A1	HGNC	ENSG00000100075				116	0	0	43	27	38.5714
CCDC116	0	genome.wustl.edu	37	22	21988331	21988331	+	Silent	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	21988331	21988331	A	T	SNP	CCDC116	ENST00000292779	human	ensembl	74_37	+1	known	silent	c.93	p.P31	0.021	NULL	NULL	-	no_errors	CCDC116	HGNC	ENSG00000161180				175	0	0	73	9	10.9756
GGTLC2	0	genome.wustl.edu	37	22	22990111	22990111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	22990111	22990111	C	T	SNP	GGTLC2	ENST00000448514	human	ensembl	74_37	+1	known	missense	c.578	p.A193V	0.529	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC2	HGNC	ENSG00000100121				48	0	0	28	9	24.3243
MMP11	0	genome.wustl.edu	37	22	24122628	24122628	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	24122628	24122628	A	C	SNP	MMP11	ENST00000215743	human	ensembl	74_37	+1	known	missense	c.421	p.T141P	1.000	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP11	HGNC	ENSG00000099953				147	0	0	35	16	31.3725
CABIN1	0	genome.wustl.edu	37	22	24468323	24468323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	24468323	24468323	C	T	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	missense	c.2495	p.A832V	0.973	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				96	0	0	34	11	24.4444
MYO18B	0	genome.wustl.edu	37	22	26422847	26422847	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	26422847	26422847	C	T	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	silent	c.6907	p.L2303	0.004	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				53	0	0	28	3	9.67742
MYO18B	0	genome.wustl.edu	37	22	26423136	26423136	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	26423136	26423136	T	G	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.7196	p.L2399R	0.567	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				126	0	0	78	17	17.8947
HPS4	0	genome.wustl.edu	37	22	26854542	26854542	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	26854542	26854542	T	C	SNP	HPS4	ENST00000398141	human	ensembl	74_37	-1	known	missense	c.1754	p.Y585C	1.000	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099				51	0	0	24	8	25
MN1	0	genome.wustl.edu	37	22	28194644	28194644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	28194644	28194644	C	T	SNP	MN1	ENST00000302326	human	ensembl	74_37	-1	known	missense	c.1888	p.A630T	1.000	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184				23	0	0	2	3	60
ZNRF3	0	genome.wustl.edu	37	22	29444421	29444421	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	29444421	29444421	C	T	SNP	ZNRF3	ENST00000544604	human	ensembl	74_37	+1	known	silent	c.957	p.C319	0.960	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579				104	0	0	37	13	26
RFPL1	0	genome.wustl.edu	37	22	29838103	29838103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	29838103	29838103	G	A	SNP	RFPL1	ENST00000354373	human	ensembl	74_37	+1	known	missense	c.946	p.A316T	0.017	NULL	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL1	HGNC	ENSG00000128250				97	0	0	53	21	28.3784
NEFH	0	genome.wustl.edu	37	22	29879408	29879408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	29879408	29879408	G	A	SNP	NEFH	ENST00000310624	human	ensembl	74_37	+1	known	missense	c.928	p.A310T	1.000	pfam_IF	pfam_IF,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285				387	0	0	104	54	34.1772
MTMR3	0	genome.wustl.edu	37	22	30403132	30403132	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	30403132	30403132	G	A	SNP	MTMR3	ENST00000401950	human	ensembl	74_37	+1	known	missense	c.701	p.R234H	1.000	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330				73	0	0	37	15	28.8462
SFI1	0	genome.wustl.edu	37	22	32010792	32010792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	32010792	32010792	C	T	SNP	SFI1	ENST00000400288	human	ensembl	74_37	+1	known	missense	c.3014	p.A1005V	0.001	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089				88	0	0	18	6	25
SLC5A1	0	genome.wustl.edu	37	22	32498181	32498181	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	32498181	32498181	T	C	SNP	SLC5A1	ENST00000266088	human	ensembl	74_37	+1	known	missense	c.1622	p.I541T	0.053	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A1	HGNC	ENSG00000100170				187	0	0	123	10	7.5188
SLC5A4	0	genome.wustl.edu	37	22	32620257	32620257	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	32620257	32620257	T	C	SNP	SLC5A4	ENST00000266086	human	ensembl	74_37	-1	known	silent	c.1662	p.V554	0.768	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A4	HGNC	ENSG00000100191				52	0	0	38	5	11.6279
RTCB	0	genome.wustl.edu	37	22	32792083	32792083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	32792083	32792083	G	A	SNP	RTCB	ENST00000216038	human	ensembl	74_37	-1	known	missense	c.968	p.S323F	1.000	pfam_RtcB,superfamily_RtcB	pfam_RtcB,superfamily_RtcB	-	no_errors	RTCB	HGNC	ENSG00000100220				612	0	0	272	16	5.55556
MAFF	0	genome.wustl.edu	37	22	38610598	38610598	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	38610598	38610598	G	A	SNP	MAFF	ENST00000338483	human	ensembl	74_37	+1	known	missense	c.208	p.V70M	1.000	pfam_bZIP_Maf,smart_bZIP,pfscan_bZIP	pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	MAFF	HGNC	ENSG00000185022				18	0	0	10	5	33.3333
ENSG00000244627	0	genome.wustl.edu	37	22	38757474	38757474	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	38757474	38757474	A	G	SNP	ENSG00000244627	ENST00000381645	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.143	-	-	-	no_errors	RP3-449O17.1	Clone_based_vega_gene	ENSG00000244627				109	0	0	41	7	14.5833
GTPBP1	0	genome.wustl.edu	37	22	39122294	39122294	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	39122294	39122294	T	C	SNP	GTPBP1	ENST00000216044	human	ensembl	74_37	+1	known	missense	c.1250	p.L417P	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel	-	no_errors	GTPBP1	HGNC	ENSG00000100226				75	0	0	18	16	47.0588
CACNA1I	0	genome.wustl.edu	37	22	40068244	40068244	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	40068244	40068244	C	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.4598	p.T1533N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				320	0	0	124	50	28.7356
GRAP2	0	genome.wustl.edu	37	22	40366928	40366928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	40366928	40366928	C	T	SNP	GRAP2	ENST00000344138	human	ensembl	74_37	+1	known	missense	c.833	p.A278V	0.999	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_SH3_domain,pfam_SH2,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	GRAP2	HGNC	ENSG00000100351				72	0	0	41	15	26.7857
TNRC6B	0	genome.wustl.edu	37	22	40681709	40681709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	40681709	40681709	G	A	SNP	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	missense	c.3643	p.V1215M	0.996	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				243	0	0	106	71	40.113
EP300	0	genome.wustl.edu	37	22	41566520	41566520	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	41566520	41566520	G	T	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.4397	p.W1466L	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				112	0	0	68	19	21.8391
ENSG00000235513	0	genome.wustl.edu	37	22	41609869	41609869	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	41609869	41609869	T	C	SNP	ENSG00000235513	ENST00000441316	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-756G23.5	Clone_based_vega_gene	ENSG00000235513				249	0	0	101	29	22.3077
TTLL1	0	genome.wustl.edu	37	22	43460219	43460219	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	43460219	43460219	C	T	SNP	TTLL1	ENST00000266254	human	ensembl	74_37	-1	known	silent	c.615	p.T205	0.051	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL1	HGNC	ENSG00000100271				103	0	0	62	4	6.06061
TTLL12	0	genome.wustl.edu	37	22	43576915	43576915	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	43576915	43576915	G	A	SNP	TTLL12	ENST00000216129	human	ensembl	74_37	-1	known	missense	c.379	p.R127C	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL12	HGNC	ENSG00000100304				91	0	0	27	17	38.6364
PKDREJ	0	genome.wustl.edu	37	22	46657010	46657010	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	46657010	46657010	A	T	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.2210	p.L737H	0.645	pfscan_REJ-like	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				177	0	0	104	37	26.2411
BRD1	0	genome.wustl.edu	37	22	50217867	50217867	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	50217867	50217867	G	A	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	silent	c.99	p.Y33	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425				215	0	0	83	40	32.5203
CRELD2	0	genome.wustl.edu	37	22	50313464	50313464	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	50313464	50313464	A	G	SNP	CRELD2	ENST00000404488	human	ensembl	74_37	+1	known	missense	c.299	p.H100R	0.693	NULL	pfam_DUF3456,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_Furin_repeat,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	CRELD2	HGNC	ENSG00000184164				36	0	0	18	3	14.2857
IL17REL	0	genome.wustl.edu	37	22	50439591	50439591	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	50439591	50439591	G	A	SNP	IL17REL	ENST00000341280	human	ensembl	74_37	-1	known	missense	c.29	p.T10M	0.362	NULL	NULL	-	no_errors	IL17REL	HGNC	ENSG00000188263				24	0	0	7	3	30
CHKB	0	genome.wustl.edu	37	22	51017908	51017908	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	51017908	51017908	C	A	SNP	CHKB	ENST00000406938	human	ensembl	74_37	-1	known	missense	c.1060	p.G354C	1.000	superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	CHKB	HGNC	ENSG00000100288				51	0	0	17	4	19.0476
MAPK8IP2	0	genome.wustl.edu	37	22	51048208	51048208	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	51048208	51048208	C	T	SNP	MAPK8IP2	ENST00000008876	human	ensembl	74_37	+1	known	silent	c.1485	p.T495	0.000	smart_PTB/PI_dom	pfam_PTB/PI_dom,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	MAPK8IP2	HGNC	ENSG00000008735				38	0	0	12	3	20
FANCD2	0	genome.wustl.edu	37	3	10084268	10084268	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	10084268	10084268	T	C	SNP	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	missense	c.809	p.L270S	0.988	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554				271	0	0	180	15	7.69231
RPL24	0	genome.wustl.edu	37	3	101399981	101399981	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	101399981	101399981	A	G	SNP	RPL24	ENST00000394077	human	ensembl	74_37	-1	known	nonstop	c.472	p.*158Q	1.000	NULL	pfam_Ribosomal_L24e_rel,smart_TRASH_dom	-	no_errors	RPL24	HGNC	ENSG00000114391				258	0	0	108	24	18.1818
CCDC37	0	genome.wustl.edu	37	3	126137556	126137556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	126137556	126137556	G	A	SNP	CCDC37	ENST00000393425	human	ensembl	74_37	+1	known	missense	c.592	p.A198T	0.042	NULL	superfamily_SuperAg_toxin_C	-	no_errors	CCDC37	HGNC	ENSG00000163885				18	0	0	6	8	57.1429
PLXNA1	0	genome.wustl.edu	37	3	126733136	126733136	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	126733136	126733136	A	G	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.2522	p.H841R	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				19	0	0	5	4	44.4444
PLXNA1	0	genome.wustl.edu	37	3	126741635	126741635	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	126741635	126741635	A	G	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.4336	p.T1446A	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				273	0	0	94	34	26.5625
COPG1	0	genome.wustl.edu	37	3	128979638	128979638	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	128979638	128979638	G	A	SNP	COPG1	ENST00000314797	human	ensembl	74_37	+1	known	silent	c.1116	p.S372	0.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Coatomer_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_gsu_app_Ig-like-sub,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_Coatomer/calthrin_app_sub_C,pirsf_Coatomer_gsu	-	no_errors	COPG1	HGNC	ENSG00000181789				135	0	0	42	22	34.375
BFSP2	0	genome.wustl.edu	37	3	133185682	133185682	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	133185682	133185682	A	G	SNP	BFSP2	ENST00000302334	human	ensembl	74_37	+1	known	missense	c.902	p.E301G	0.025	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	BFSP2	HGNC	ENSG00000170819				109	0	0	34	12	26.087
BFSP2	0	genome.wustl.edu	37	3	133191257	133191257	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	133191257	133191257	C	T	SNP	BFSP2	ENST00000302334	human	ensembl	74_37	+1	known	silent	c.1092	p.G364	1.000	pfam_IF,prints_Keratin_I	pfam_IF,prints_Keratin_I	-	no_errors	BFSP2	HGNC	ENSG00000170819				48	0	0	17	7	29.1667
EPHB1	0	genome.wustl.edu	37	3	134960032	134960032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	134960032	134960032	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	missense	c.2389	p.A797T	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				258	0	0	96	64	40
PRR23C	0	genome.wustl.edu	37	3	138762997	138762997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	138762997	138762997	C	T	SNP	PRR23C	ENST00000413199	human	ensembl	74_37	-1	known	missense	c.466	p.E156K	0.000	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23C	HGNC	ENSG00000233701				44	0	0	12	5	29.4118
CHST2	0	genome.wustl.edu	37	3	142840223	142840223	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	142840223	142840223	G	A	SNP	CHST2	ENST00000309575	human	ensembl	74_37	+1	known	missense	c.565	p.E189K	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040				145	0	0	52	24	31.5789
TSC22D2	0	genome.wustl.edu	37	3	150128353	150128353	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	150128353	150128353	G	C	SNP	TSC22D2	ENST00000361875	human	ensembl	74_37	+1	known	missense	c.1216	p.A406P	0.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D2	HGNC	ENSG00000196428				13	0	0	7	4	36.3636
GPR87	0	genome.wustl.edu	37	3	151012788	151012788	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	151012788	151012788	G	A	SNP	GPR87	ENST00000260843	human	ensembl	74_37	-1	known	silent	c.246	p.N82	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt	-	no_errors	GPR87	HGNC	ENSG00000138271				102	0	0	18	51	73.913
MED12L	0	genome.wustl.edu	37	3	151150579	151150579	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	151150579	151150579	C	A	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.6425	p.P2142H	0.976	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				40	0	0	28	3	9.67742
SHOX2	0	genome.wustl.edu	37	3	157815997	157815997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	157815997	157815997	G	A	SNP	SHOX2	ENST00000389589	human	ensembl	74_37	-1	known	missense	c.887	p.A296V	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	SHOX2	HGNC	ENSG00000168779				207	0	0	109	59	35.119
DAZL	0	genome.wustl.edu	37	3	16638359	16638359	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	16638359	16638359	A	G	SNP	DAZL	ENST00000399444	human	ensembl	74_37	-1	known	silent	c.396	p.N132	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DAZL	HGNC	ENSG00000092345				170	0	0	81	40	33.0579
ACTRT3	0	genome.wustl.edu	37	3	169486060	169486060	+	Silent	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	169486060	169486060	T	A	SNP	ACTRT3	ENST00000330368	human	ensembl	74_37	-1	known	silent	c.279	p.L93	0.092	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT3	HGNC	ENSG00000184378				106	0	0	53	4	7.01754
MFN1	0	genome.wustl.edu	37	3	179085364	179085364	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	179085364	179085364	G	A	SNP	MFN1	ENST00000263969	human	ensembl	74_37	+1	known	silent	c.891	p.Q297	1.000	superfamily_P-loop_NTPase	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN1	HGNC	ENSG00000171109				51	0	0	36	2	5.26316
PEX5L	0	genome.wustl.edu	37	3	179754568	179754568	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	179754568	179754568	G	A	SNP	PEX5L	ENST00000474909	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.642	-	-	-	no_errors	PEX5L	HGNC	ENSG00000114757				19	0	0	5	5	50
ABCC5	0	genome.wustl.edu	37	3	183665113	183665113	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	183665113	183665113	T	C	SNP	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	missense	c.3413	p.Q1138R	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770				37	0	0	14	10	41.6667
CHRD	0	genome.wustl.edu	37	3	184104344	184104344	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	184104344	184104344	T	G	SNP	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	missense	c.1997	p.V666G	0.000	pirsf_Chordin	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539				20	0	0	2	4	66.6667
C3orf65	0	genome.wustl.edu	37	3	185434390	185434390	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	185434390	185434390	T	C	SNP	C3orf65	ENST00000296270	human	ensembl	74_37	+1	known	missense	c.223	p.Y75H	0.000	NULL	NULL	-	no_errors	C3orf65	HGNC	ENSG00000163915				60	0	0	32	19	37.2549
MB21D2	0	genome.wustl.edu	37	3	192516463	192516463	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	192516463	192516463	G	A	SNP	MB21D2	ENST00000392452	human	ensembl	74_37	-1	known	silent	c.1188	p.H396	0.996	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MB21D2	HGNC	ENSG00000180611				61	0	0	45	12	21.0526
ATP13A3	0	genome.wustl.edu	37	3	194158117	194158117	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	194158117	194158117	A	G	SNP	ATP13A3	ENST00000256031	human	ensembl	74_37	-1	known	missense	c.1922	p.V641A	0.980	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A3	HGNC	ENSG00000133657				112	0	0	66	28	29.7872
TNK2	0	genome.wustl.edu	37	3	195594422	195594422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	195594422	195594422	G	A	SNP	TNK2	ENST00000381916	human	ensembl	74_37	-1	known	missense	c.2936	p.A979V	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cdc42_binding_dom_like,pfam_Inhibitor_Mig-6,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	TNK2	HGNC	ENSG00000061938				21	0	0	10	6	37.5
SENP5	0	genome.wustl.edu	37	3	196613205	196613205	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	196613205	196613205	A	G	SNP	SENP5	ENST00000323460	human	ensembl	74_37	+1	known	missense	c.1153	p.M385V	0.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP5	HGNC	ENSG00000119231				75	0	0	51	37	42.0455
ZNF385D	0	genome.wustl.edu	37	3	21467097	21467097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	21467097	21467097	C	T	SNP	ZNF385D	ENST00000281523	human	ensembl	74_37	-1	known	missense	c.739	p.A247T	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385D	HGNC	ENSG00000151789				98	0	0	46	22	32.3529
HMGB1P5	0	genome.wustl.edu	37	3	22423959	22423959	+	RNA	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	22423959	22423959	G	C	SNP	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967				57	0	0	35	8	18.6047
SLC4A7	0	genome.wustl.edu	37	3	27427494	27427494	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	27427494	27427494	C	T	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	silent	c.3381	p.V1127	0.399	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				214	0	0	76	41	35.0427
OSBPL10	0	genome.wustl.edu	37	3	31774766	31774766	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	31774766	31774766	A	C	SNP	OSBPL10	ENST00000396556	human	ensembl	74_37	-1	known	missense	c.1078	p.S360A	0.001	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645				150	0	0	63	33	34.375
ITGA9	0	genome.wustl.edu	37	3	37567542	37567542	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	37567542	37567542	C	T	SNP	ITGA9	ENST00000264741	human	ensembl	74_37	+1	known	silent	c.1353	p.S451	0.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668				88	0	0	43	15	25.8621
SCN10A	0	genome.wustl.edu	37	3	38740025	38740025	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	38740025	38740025	T	C	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	silent	c.4686	p.S1562	0.302	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				145	0	0	84	5	5.61798
SCN11A	0	genome.wustl.edu	37	3	38966983	38966983	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	38966983	38966983	G	A	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	missense	c.635	p.P212L	0.006	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				85	0	0	41	18	30.5085
TGM4	0	genome.wustl.edu	37	3	44943294	44943294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	44943294	44943294	C	T	SNP	TGM4	ENST00000296125	human	ensembl	74_37	+1	known	missense	c.842	p.A281V	0.104	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM4	HGNC	ENSG00000163810				56	0	0	33	10	23.2558
LARS2	0	genome.wustl.edu	37	3	45554625	45554625	+	Splice_Site	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	45554625	45554625	A	C	SNP	LARS2	ENST00000265537	human	ensembl	74_37	+1	known	splice_site	c.1761-2	e14-2	1.000	-	-	-	no_errors	LARS2	HGNC	ENSG00000011376				211	0	0	69	33	32.3529
SETD2	0	genome.wustl.edu	37	3	47098830	47098830	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	47098830	47098830	T	C	SNP	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	silent	c.6444	p.S2148	0.997	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555				236	0	0	136	15	9.93377
SMARCC1	0	genome.wustl.edu	37	3	47716999	47716999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	47716999	47716999	C	T	SNP	SMARCC1	ENST00000254480	human	ensembl	74_37	-1	known	missense	c.1805	p.R602H	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473				63	0	0	24	13	35.1351
DHX30	0	genome.wustl.edu	37	3	47887826	47887826	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	47887826	47887826	C	T	SNP	DHX30	ENST00000445061	human	ensembl	74_37	+1	known	missense	c.1264	p.R422W	1.000	NULL	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153				221	0	0	70	40	36.3636
CELSR3	0	genome.wustl.edu	37	3	48694142	48694142	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	48694142	48694142	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.4388	p.P1463L	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				13	0	0	5	3	37.5
P4HTM	0	genome.wustl.edu	37	3	49042356	49042356	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	49042356	49042356	T	C	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.950	p.V317A	0.998	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				156	0	0	58	37	38.9474
P4HTM	0	genome.wustl.edu	37	3	49042445	49042445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	49042445	49042445	G	A	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.1039	p.A347T	0.976	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				111	0	0	45	29	39.1892
DAG1	0	genome.wustl.edu	37	3	49547944	49547944	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	49547944	49547944	G	A	SNP	DAG1	ENST00000469139	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	DAG1	HGNC	ENSG00000173402				127	0	0	55	22	28.5714
MST1	0	genome.wustl.edu	37	3	49724649	49724649	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	49724649	49724649	A	G	SNP	MST1	ENST00000545762	human	ensembl	74_37	-1	known	missense	c.383	p.V128A	0.892	NULL	pfam_PAN-1_domain,smart_Pan_app,pfscan_Pan_app	-	no_errors	MST1	HGNC	ENSG00000173531				87	0	0	32	12	27.2727
UBA7	0	genome.wustl.edu	37	3	49846865	49846865	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	49846865	49846865	A	G	SNP	UBA7	ENST00000333486	human	ensembl	74_37	-1	known	silent	c.2121	p.G707	0.125	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179				227	0	0	78	44	36.0656
RASSF1	0	genome.wustl.edu	37	3	50368024	50368024	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	50368024	50368024	G	A	SNP	RASSF1	ENST00000357043	human	ensembl	74_37	-1	known	silent	c.1023	p.C341	0.996	pfscan_SARAH_dom	pfam_Ras-assoc,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	RASSF1	HGNC	ENSG00000068028				189	0	0	78	7	8.23529
PARP3	0	genome.wustl.edu	37	3	51978458	51978458	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	51978458	51978458	A	G	SNP	PARP3	ENST00000398755	human	ensembl	74_37	+1	known	missense	c.386	p.K129R	0.996	pfam_WGR_domain,superfamily_WGR_domain,smart_WGR_domain	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880				299	0	0	92	34	26.9841
DNAH1	0	genome.wustl.edu	37	3	52433185	52433185	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	52433185	52433185	A	G	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.12409	p.I4137V	0.997	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				688	1	0.145138	254	155	37.8973
EDEM1	0	genome.wustl.edu	37	3	5244703	5244703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	5244703	5244703	C	T	SNP	EDEM1	ENST00000256497	human	ensembl	74_37	+1	known	missense	c.911	p.A304V	0.999	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM1	HGNC	ENSG00000134109				186	0	0	82	53	39.2593
RFT1	0	genome.wustl.edu	37	3	53145912	53145912	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	53145912	53145912	A	C	SNP	RFT1	ENST00000296292	human	ensembl	74_37	-1	known	missense	c.709	p.W237G	1.000	pfam_RFT1	pfam_RFT1	-	no_errors	RFT1	HGNC	ENSG00000163933				116	0	0	91	25	21.5517
LRIG1	0	genome.wustl.edu	37	3	66467669	66467669	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	66467669	66467669	G	A	SNP	LRIG1	ENST00000273261	human	ensembl	74_37	-1	known	silent	c.387	p.S129	0.013	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG1	HGNC	ENSG00000144749				406	0	0	127	76	37.4384
ROBO1	0	genome.wustl.edu	37	3	78766489	78766489	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	78766489	78766489	C	T	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.853	p.A285T	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				269	0	0	93	59	38.8158
LHFPL4	0	genome.wustl.edu	37	3	9547804	9547804	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	9547804	9547804	C	T	SNP	LHFPL4	ENST00000287585	human	ensembl	74_37	-1	known	missense	c.490	p.G164R	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL4	HGNC	ENSG00000156959				153	0	0	53	22	29.3333
FILIP1L	0	genome.wustl.edu	37	3	99568802	99568802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	99568802	99568802	G	A	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	missense	c.1718	p.A573V	1.000	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				113	0	0	65	35	35
FILIP1L	0	genome.wustl.edu	37	3	99569758	99569758	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	99569758	99569758	G	T	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	silent	c.762	p.T254	0.808	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				204	0	0	148	40	21.2766
MTTP	0	genome.wustl.edu	37	4	100540226	100540226	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	100540226	100540226	T	C	SNP	MTTP	ENST00000265517	human	ensembl	74_37	+1	known	silent	c.2313	p.Y771	1.000	NULL	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823				230	0	0	89	43	32.5758
FGFRL1	0	genome.wustl.edu	37	4	1018157	1018157	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	1018157	1018157	C	T	SNP	FGFRL1	ENST00000264748	human	ensembl	74_37	+1	known	silent	c.777	p.D259	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FGFRL1	HGNC	ENSG00000127418				148	0	0	50	4	7.40741
CXXC4	0	genome.wustl.edu	37	4	105412536	105412536	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	105412536	105412536	C	A	SNP	CXXC4	ENST00000394767	human	ensembl	74_37	-1	known	missense	c.424	p.A142S	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC4	HGNC	ENSG00000168772				23	0	0	12	6	33.3333
PPA2	0	genome.wustl.edu	37	4	106345398	106345398	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	106345398	106345398	A	T	SNP	PPA2	ENST00000357415	human	ensembl	74_37	-1	known	missense	c.655	p.L219I	1.000	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	-	no_errors	PPA2	HGNC	ENSG00000138777				157	0	0	102	8	7.27273
SEC24B	0	genome.wustl.edu	37	4	110448544	110448544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	110448544	110448544	C	T	SNP	SEC24B	ENST00000265175	human	ensembl	74_37	+1	known	missense	c.3032	p.A1011V	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802				112	0	0	83	31	27.193
EGF	0	genome.wustl.edu	37	4	110915959	110915959	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	110915959	110915959	T	C	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	silent	c.2928	p.C976	0.984	pirsf_Pro-epidermal_GF,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798				153	0	0	69	27	28.125
ANK2	0	genome.wustl.edu	37	4	114254212	114254212	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	114254212	114254212	C	A	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.3227	p.P1076H	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				151	1	0.657895	70	35	33.3333
UGT8	0	genome.wustl.edu	37	4	115597177	115597177	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	115597177	115597177	T	C	SNP	UGT8	ENST00000310836	human	ensembl	74_37	+1	known	silent	c.1359	p.R453	0.914	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607				182	0	0	114	12	9.52381
NT5C3AP1	0	genome.wustl.edu	37	4	118496740	118496740	+	RNA	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	118496740	118496740	T	A	SNP	NT5C3AP1	ENST00000441170	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NT5C3AP1	HGNC	ENSG00000213492				129	0	0	66	30	31.25
PRDM5	0	genome.wustl.edu	37	4	121843735	121843735	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	121843735	121843735	A	G	SNP	PRDM5	ENST00000264808	human	ensembl	74_37	-1	known	missense	c.29	p.F10S	1.000	smart_SET_dom,pirsf_Znf_PRDM5	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738				44	0	0	10	3	23.0769
BBS12	0	genome.wustl.edu	37	4	123664360	123664360	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	123664360	123664360	A	G	SNP	BBS12	ENST00000314218	human	ensembl	74_37	+1	known	missense	c.1313	p.N438S	0.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	BBS12	HGNC	ENSG00000181004				128	0	0	83	11	11.7021
MAEA	0	genome.wustl.edu	37	4	1316173	1316173	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	1316173	1316173	T	C	SNP	MAEA	ENST00000303400	human	ensembl	74_37	+1	known	missense	c.461	p.L154P	1.000	NULL	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MAEA	HGNC	ENSG00000090316				268	0	0	93	58	38.4106
MAB21L2	0	genome.wustl.edu	37	4	151504409	151504409	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	151504409	151504409	G	T	SNP	MAB21L2	ENST00000317605	human	ensembl	74_37	+1	known	silent	c.228	p.V76	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom,pfscan_Ricin_B_lectin	-	no_errors	MAB21L2	HGNC	ENSG00000181541				123	0	0	41	25	37.8788
FBXW7	0	genome.wustl.edu	37	4	153249385	153249385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	153249385	153249385	G	A	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	missense	c.1393	p.R465C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				256	0	0	156	67	30.0448
FHDC1	0	genome.wustl.edu	37	4	153896474	153896474	+	Silent	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	153896474	153896474	A	C	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	silent	c.2031	p.T677	0.000	NULL	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				106	0	0	43	16	27.1186
TRIM2	0	genome.wustl.edu	37	4	154216859	154216859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	154216859	154216859	C	T	SNP	TRIM2	ENST00000338700	human	ensembl	74_37	+1	known	missense	c.1181	p.A394V	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654				97	0	0	37	25	40.3226
FBXL5	0	genome.wustl.edu	37	4	15642491	15642491	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	15642491	15642491	A	G	SNP	FBXL5	ENST00000341285	human	ensembl	74_37	-1	known	silent	c.316	p.L106	1.000	NULL	pfam_F-box_dom,pfam_Leu-rich_rpt,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL5	HGNC	ENSG00000118564				94	0	0	42	21	33.3333
PDGFC	0	genome.wustl.edu	37	4	157688944	157688944	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	157688944	157688944	A	G	SNP	PDGFC	ENST00000502773	human	ensembl	74_37	-1	known	missense	c.902	p.V301A	0.999	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	pfam_CUB_dom,pfam_PDGF/VEGF_dom,superfamily_CUB_dom,smart_CUB_dom,smart_PDGF/VEGF_dom,pfscan_CUB_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFC	HGNC	ENSG00000145431				90	0	0	46	28	37.8378
FAM198B	0	genome.wustl.edu	37	4	159092074	159092074	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	159092074	159092074	G	A	SNP	FAM198B	ENST00000393807	human	ensembl	74_37	-1	known	missense	c.454	p.P152S	0.000	NULL	NULL	-	no_errors	FAM198B	HGNC	ENSG00000164125				128	0	0	55	35	38.8889
NPY5R	0	genome.wustl.edu	37	4	164271917	164271917	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	164271917	164271917	G	A	SNP	NPY5R	ENST00000338566	human	ensembl	74_37	+1	known	nonsense	c.492	p.W164*	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_NPY5_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	NPY5R	HGNC	ENSG00000164129				320	0	0	168	73	30.2905
TLL1	0	genome.wustl.edu	37	4	167022027	167022027	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	167022027	167022027	A	G	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	silent	c.3041	p.*1014	1.000	NULL	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				64	0	0	39	16	29.0909
TENM3	0	genome.wustl.edu	37	4	183721042	183721042	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	183721042	183721042	G	A	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	silent	c.7638	p.T2546	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				37	0	0	12	8	40
TRAPPC11	0	genome.wustl.edu	37	4	184614279	184614279	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	184614279	184614279	T	C	SNP	TRAPPC11	ENST00000334690	human	ensembl	74_37	+1	known	missense	c.2216	p.I739T	0.272	NULL	pfam_Foie-gras_1,pfam_DUF1683_C	-	no_errors	TRAPPC11	HGNC	ENSG00000168538				66	0	0	35	22	38.5965
CASP3	0	genome.wustl.edu	37	4	185552304	185552304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	185552304	185552304	C	T	SNP	CASP3	ENST00000308394	human	ensembl	74_37	-1	known	missense	c.491	p.R164H	1.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP3	HGNC	ENSG00000164305				77	0	0	29	14	32.5581
CYP4V2	0	genome.wustl.edu	37	4	187131879	187131879	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	187131879	187131879	T	C	SNP	CYP4V2	ENST00000502665	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYP4V2	HGNC	ENSG00000145476				12	0	0	19	9	32.1429
WHSC1	0	genome.wustl.edu	37	4	1932443	1932443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	1932443	1932443	C	T	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	missense	c.1501	p.R501C	0.997	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				79	0	0	50	4	7.40741
CCKAR	0	genome.wustl.edu	37	4	26483534	26483534	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	26483534	26483534	T	C	SNP	CCKAR	ENST00000295589	human	ensembl	74_37	-1	known	missense	c.1013	p.Y338C	0.934	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcskin_rcpt	pfam_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394				148	0	0	62	35	36.0825
CCKAR	0	genome.wustl.edu	37	4	26487447	26487447	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	26487447	26487447	G	A	SNP	CCKAR	ENST00000295589	human	ensembl	74_37	-1	known	silent	c.438	p.P146	0.170	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcskin_rcpt,prints_Gastrin_rcpt	pfam_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394				37	0	0	26	14	35
SH3BP2	0	genome.wustl.edu	37	4	2822459	2822459	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	2822459	2822459	A	G	SNP	SH3BP2	ENST00000503393	human	ensembl	74_37	+1	known	missense	c.286	p.T96A	0.996	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	SH3BP2	HGNC	ENSG00000087266				62	0	0	31	11	26.1905
SH3BP2	0	genome.wustl.edu	37	4	2828969	2828969	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	2828969	2828969	G	A	SNP	SH3BP2	ENST00000503393	human	ensembl	74_37	+1	known	silent	c.612	p.S204	0.102	NULL	pfam_Pleckstrin_homology,pfam_SH2,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2	-	no_errors	SH3BP2	HGNC	ENSG00000087266				141	0	0	36	18	33.3333
HTT	0	genome.wustl.edu	37	4	3219640	3219640	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	3219640	3219640	C	T	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	silent	c.7203	p.R2401	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				149	0	0	66	10	13.1579
RGS12	0	genome.wustl.edu	37	4	3417718	3417718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	3417718	3417718	C	T	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	missense	c.2297	p.A766V	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				23	0	0	5	4	44.4444
TBC1D1	0	genome.wustl.edu	37	4	38022259	38022259	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	38022259	38022259	C	T	SNP	TBC1D1	ENST00000261439	human	ensembl	74_37	+1	known	silent	c.1020	p.S340	0.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882				434	0	0	156	71	31.2775
KLB	0	genome.wustl.edu	37	4	39450263	39450263	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	39450263	39450263	T	C	SNP	KLB	ENST00000257408	human	ensembl	74_37	+1	known	missense	c.3092	p.L1031S	0.958	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KLB	HGNC	ENSG00000134962				135	0	0	84	26	23.6364
UBE2K	0	genome.wustl.edu	37	4	39699908	39699908	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	39699908	39699908	T	C	SNP	UBE2K	ENST00000438068	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UBE2K	HGNC	ENSG00000078140				16	0	0	7	3	30
DCAF4L1	0	genome.wustl.edu	37	4	41984520	41984520	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	41984520	41984520	T	C	SNP	DCAF4L1	ENST00000333141	human	ensembl	74_37	+1	known	silent	c.711	p.P237	0.901	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L1	HGNC	ENSG00000182308				314	0	0	135	59	30.4124
LYAR	0	genome.wustl.edu	37	4	4285410	4285410	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	4285410	4285410	C	A	SNP	LYAR	ENST00000343470	human	ensembl	74_37	-1	known	missense	c.60	p.K20N	1.000	NULL	pfam_Znf_C2H2_LYAR	-	no_errors	LYAR	HGNC	ENSG00000145220				67	0	0	17	19	52.7778
TEC	0	genome.wustl.edu	37	4	48169970	48169970	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	48169970	48169970	G	A	SNP	TEC	ENST00000381501	human	ensembl	74_37	-1	known	nonsense	c.496	p.R166*	0.998	superfamily_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	TEC	HGNC	ENSG00000135605				132	0	0	54	28	34.1463
EPHA5	0	genome.wustl.edu	37	4	66230798	66230798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	66230798	66230798	C	T	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	missense	c.2173	p.A725T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				221	0	0	124	22	15.0685
PARM1	0	genome.wustl.edu	37	4	75937954	75937954	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	75937954	75937954	G	A	SNP	PARM1	ENST00000307428	human	ensembl	74_37	+1	known	silent	c.363	p.T121	0.000	NULL	NULL	-	no_errors	PARM1	HGNC	ENSG00000169116				232	0	0	114	54	32.1429
SHROOM3	0	genome.wustl.edu	37	4	77675534	77675534	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	77675534	77675534	G	A	SNP	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	missense	c.3898	p.G1300S	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771				240	0	0	138	28	16.8675
ENSG00000233860	0	genome.wustl.edu	37	4	77678143	77678143	+	RNA	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	77678143	77678143	G	T	SNP	ENSG00000233860	ENST00000452412	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	RP11-359D14.2	Clone_based_vega_gene	ENSG00000233860				51	0	0	35	4	10.2564
AFAP1	0	genome.wustl.edu	37	4	7844918	7844918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	7844918	7844918	C	T	SNP	AFAP1	ENST00000420658	human	ensembl	74_37	-1	known	missense	c.494	p.R165Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC	ENSG00000196526				79	0	0	44	19	30.1587
ABLIM2	0	genome.wustl.edu	37	4	8037891	8037891	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	8037891	8037891	C	T	SNP	ABLIM2	ENST00000447017	human	ensembl	74_37	-1	known	silent	c.1032	p.R344	1.000	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995				68	0	0	27	5	15.625
ABLIM2	0	genome.wustl.edu	37	4	8098904	8098904	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	8098904	8098904	T	C	SNP	ABLIM2	ENST00000447017	human	ensembl	74_37	-1	known	missense	c.260	p.D87G	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995				35	0	0	9	4	30.7692
SH3TC1	0	genome.wustl.edu	37	4	8229582	8229582	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	8229582	8229582	T	C	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	missense	c.2161	p.C721R	0.861	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				150	0	0	63	6	8.69565
PLAC8	0	genome.wustl.edu	37	4	84026148	84026148	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	84026148	84026148	C	T	SNP	PLAC8	ENST00000311507	human	ensembl	74_37	-1	known	silent	c.144	p.P48	0.000	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	-	no_errors	PLAC8	HGNC	ENSG00000145287				99	0	0	35	12	25.5319
WDFY3	0	genome.wustl.edu	37	4	85750185	85750185	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	85750185	85750185	A	G	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.928	p.Y310H	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				108	0	0	60	28	31.8182
MEPE	0	genome.wustl.edu	37	4	88766641	88766641	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	88766641	88766641	A	G	SNP	MEPE	ENST00000361056	human	ensembl	74_37	+1	known	silent	c.621	p.P207	0.009	pfam_Osteoregulin	pfam_Osteoregulin	-	no_errors	MEPE	HGNC	ENSG00000152595				195	0	0	94	9	8.73786
HERC5	0	genome.wustl.edu	37	4	89415439	89415439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	89415439	89415439	C	T	SNP	HERC5	ENST00000264350	human	ensembl	74_37	+1	known	missense	c.2401	p.P801S	0.989	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646				82	0	0	45	7	13.4615
USP17L10	0	genome.wustl.edu	37	4	9213847	9213847	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	9213847	9213847	C	A	SNP	USP17L10	ENST00000417945	human	ensembl	74_37	+1	novel	missense	c.1465	p.L489I	0.000	NULL	pfam_Peptidase_C19/C67,pfam_HABP4_PAIRBP1-bd,pfscan_Peptidase_C19/C67	-	no_errors	USP17L10	HGNC	ENSG00000231396				37	0	0	4	16	80
GRID2	0	genome.wustl.edu	37	4	94693552	94693552	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	94693552	94693552	G	T	SNP	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	missense	c.2927	p.R976M	1.000	NULL	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208				93	0	0	52	25	32.4675
SLC26A1	0	genome.wustl.edu	37	4	985400	985400	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	985400	985400	A	G	SNP	SLC26A1	ENST00000361661	human	ensembl	74_37	-1	known	missense	c.92	p.L31P	0.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A1	HGNC	ENSG00000145217				46	0	0	26	9	25.7143
MCC	0	genome.wustl.edu	37	5	112824010	112824010	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	112824010	112824010	G	A	SNP	MCC	ENST00000408903	human	ensembl	74_37	-1	putative	silent	c.102	p.T34	0.988	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MCC	HGNC	ENSG00000171444				40	0	0	11	9	45
SLC6A19	0	genome.wustl.edu	37	5	1212549	1212549	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	1212549	1212549	T	C	SNP	SLC6A19	ENST00000304460	human	ensembl	74_37	+1	known	missense	c.613	p.W205R	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A19	HGNC	ENSG00000174358				226	0	0	63	41	39.4231
GRAMD3	0	genome.wustl.edu	37	5	125819169	125819169	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	125819169	125819169	A	T	SNP	GRAMD3	ENST00000542322	human	ensembl	74_37	+1	known	missense	c.774	p.E258D	0.999	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD3	HGNC	ENSG00000155324				86	0	0	46	19	29.2308
GRAMD3	0	genome.wustl.edu	37	5	125821457	125821457	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	125821457	125821457	T	C	SNP	GRAMD3	ENST00000542322	human	ensembl	74_37	+1	known	silent	c.1074	p.Y358	0.993	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD3	HGNC	ENSG00000155324				54	0	0	17	16	48.4848
MEGF10	0	genome.wustl.edu	37	5	126783248	126783248	+	Splice_Site	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	126783248	126783248	G	T	SNP	MEGF10	ENST00000274473	human	ensembl	74_37	+1	known	splice_site	c.2729-1	e20-1	1.000	-	-	-	no_errors	MEGF10	HGNC	ENSG00000145794				158	0	0	60	36	37.5
CHSY3	0	genome.wustl.edu	37	5	129243911	129243911	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	129243911	129243911	T	C	SNP	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	missense	c.944	p.M315T	1.000	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108				89	0	0	35	24	40.678
SEPT8	0	genome.wustl.edu	37	5	132096635	132096635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	132096635	132096635	C	T	SNP	SEPT8	ENST00000378719	human	ensembl	74_37	-1	known	missense	c.1145	p.R382H	1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT8	HGNC	ENSG00000164402				276	1	0.361011	85	56	39.7163
SEC24A	0	genome.wustl.edu	37	5	133996998	133996998	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	133996998	133996998	T	C	SNP	SEC24A	ENST00000398844	human	ensembl	74_37	+1	known	missense	c.287	p.V96A	0.184	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615				256	1	0.389105	116	49	29.697
TGFBI	0	genome.wustl.edu	37	5	135382977	135382977	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	135382977	135382977	C	T	SNP	TGFBI	ENST00000305126	human	ensembl	74_37	+1	known	silent	c.639	p.N213	1.000	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708				155	0	0	118	7	5.6
CDC23	0	genome.wustl.edu	37	5	137537824	137537824	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	137537824	137537824	G	A	SNP	CDC23	ENST00000394886	human	ensembl	74_37	-1	known	silent	c.393	p.D131	1.000	pfam_APC8	pfam_APC8,pfam_TPR_1,pfam_Transposase_InsH_N,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC23	HGNC	ENSG00000094880				43	0	0	19	15	44.1176
GFRA3	0	genome.wustl.edu	37	5	137610052	137610052	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	137610052	137610052	A	G	SNP	GFRA3	ENST00000274721	human	ensembl	74_37	-1	known	missense	c.62	p.L21P	0.888	prints_GDNF_rcpt_A3	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013				17	0	0	7	3	30
CTNNA1	0	genome.wustl.edu	37	5	138118937	138118937	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	138118937	138118937	T	C	SNP	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	silent	c.177	p.H59	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115				103	0	0	53	27	33.75
LRRTM2	0	genome.wustl.edu	37	5	138209437	138209437	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	138209437	138209437	T	C	SNP	LRRTM2	ENST00000274711	human	ensembl	74_37	-1	known	silent	c.813	p.T271	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM2	HGNC	ENSG00000146006				488	0	0	241	116	32.493
SLC4A9	0	genome.wustl.edu	37	5	139742537	139742537	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	139742537	139742537	A	T	SNP	SLC4A9	ENST00000230993	human	ensembl	74_37	+1	known	missense	c.920	p.D307V	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073				264	1	0.377358	113	28	19.8582
ANKHD1	0	genome.wustl.edu	37	5	139893056	139893056	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	139893056	139893056	C	A	SNP	ANKHD1	ENST00000297183	human	ensembl	74_37	+1	known	missense	c.4309	p.L1437M	0.998	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503				106	0	0	55	14	20.2899
CD14	0	genome.wustl.edu	37	5	140012551	140012551	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140012551	140012551	G	C	SNP	CD14	ENST00000302014	human	ensembl	74_37	-1	known	missense	c.18	p.C6W	0.000	pirsf_Monocyte_diff_Ag_CD14	pfam_Leu-rich_rpt,pirsf_Monocyte_diff_Ag_CD14	-	no_errors	CD14	HGNC	ENSG00000170458				71	0	0	22	10	31.25
WDR55	0	genome.wustl.edu	37	5	140044509	140044509	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140044509	140044509	T	C	SNP	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	silent	c.12	p.T4	0.010	pirsf_WD_repeat_p55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314				23	0	0	10	3	23.0769
PCDHA4	0	genome.wustl.edu	37	5	140188560	140188560	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140188560	140188560	G	A	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	silent	c.1788	p.A596	0.344	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				216	0	0	69	34	33.0097
PCDHA8	0	genome.wustl.edu	37	5	140221266	140221266	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140221266	140221266	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	silent	c.360	p.D120	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				306	0	0	157	70	30.837
PCDHA8	0	genome.wustl.edu	37	5	140221296	140221296	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140221296	140221296	G	A	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	silent	c.390	p.P130	0.036	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				271	0	0	189	19	9.13462
PCDHA8	0	genome.wustl.edu	37	5	140222880	140222880	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140222880	140222880	G	A	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	silent	c.1974	p.A658	0.071	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				228	0	0	99	35	26.1194
PCDHB3	0	genome.wustl.edu	37	5	140481379	140481379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140481379	140481379	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1146	p.M382I	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				141	0	0	93	20	17.6991
PCDHB5	0	genome.wustl.edu	37	5	140516594	140516594	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140516594	140516594	C	T	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	silent	c.1578	p.F526	0.982	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				183	1	0.543478	61	34	35.7895
PCDHB11	0	genome.wustl.edu	37	5	140581656	140581656	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140581656	140581656	T	C	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.2309	p.V770A	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				144	0	0	97	15	13.3929
PCDHGB4	0	genome.wustl.edu	37	5	140768044	140768044	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140768044	140768044	C	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	74_37	+1	known	missense	c.593	p.T198I	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953				142	0	0	77	25	24.5098
PCDHGB4	0	genome.wustl.edu	37	5	140768489	140768489	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140768489	140768489	A	G	SNP	PCDHGB4	ENST00000519479	human	ensembl	74_37	+1	known	missense	c.1038	p.I346M	0.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953				115	0	0	66	5	7.04225
PCDHGA12	0	genome.wustl.edu	37	5	140812079	140812079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140812079	140812079	G	A	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.1753	p.G585S	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				306	1	0.325733	103	56	35.2201
ARAP3	0	genome.wustl.edu	37	5	141052874	141052874	+	RNA	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	141052874	141052874	A	C	SNP	ARAP3	ENST00000524066	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	ARAP3	HGNC	ENSG00000120318				36	0	0	12	8	40
GRXCR2	0	genome.wustl.edu	37	5	145246164	145246164	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	145246164	145246164	T	G	SNP	GRXCR2	ENST00000377976	human	ensembl	74_37	-1	known	missense	c.464	p.E155A	0.955	NULL	NULL	-	no_errors	GRXCR2	HGNC	ENSG00000204928				198	0	0	87	47	35.0746
GRXCR2	0	genome.wustl.edu	37	5	145246209	145246209	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	145246209	145246209	T	C	SNP	GRXCR2	ENST00000377976	human	ensembl	74_37	-1	known	missense	c.419	p.D140G	1.000	NULL	NULL	-	no_errors	GRXCR2	HGNC	ENSG00000204928				154	0	0	78	24	23.5294
TCERG1	0	genome.wustl.edu	37	5	145838519	145838519	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	145838519	145838519	T	C	SNP	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	missense	c.511	p.S171P	1.000	superfamily_WW_dom	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				245	0	0	79	37	31.8966
TCERG1	0	genome.wustl.edu	37	5	145838635	145838635	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	145838635	145838635	T	C	SNP	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	silent	c.627	p.A209	0.794	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				72	0	0	37	15	28.8462
LPCAT1	0	genome.wustl.edu	37	5	1463936	1463936	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	1463936	1463936	A	G	SNP	LPCAT1	ENST00000283415	human	ensembl	74_37	-1	known	missense	c.1435	p.F479L	0.694	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	LPCAT1	HGNC	ENSG00000153395				230	0	0	96	43	30.9353
ADRB2	0	genome.wustl.edu	37	5	148206692	148206692	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	148206692	148206692	A	G	SNP	ADRB2	ENST00000305988	human	ensembl	74_37	+1	known	missense	c.298	p.T100A	0.723	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB2_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRB2	HGNC	ENSG00000169252				69	0	0	49	26	34.6667
IL17B	0	genome.wustl.edu	37	5	148754068	148754068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	148754068	148754068	C	T	SNP	IL17B	ENST00000261796	human	ensembl	74_37	-1	known	missense	c.407	p.R136H	1.000	pfam_IL-17_fam	pfam_IL-17_fam,prints_IL-17_chr	-	no_errors	IL17B	HGNC	ENSG00000127743				112	0	0	33	9	21.4286
NDST1	0	genome.wustl.edu	37	5	149900850	149900850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	149900850	149900850	C	T	SNP	NDST1	ENST00000261797	human	ensembl	74_37	+1	known	missense	c.34	p.R12W	1.000	NULL	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST1	HGNC	ENSG00000070614				106	0	0	47	14	22.9508
SYNPO	0	genome.wustl.edu	37	5	150029322	150029322	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	150029322	150029322	C	T	SNP	SYNPO	ENST00000394243	human	ensembl	74_37	+1	known	silent	c.2217	p.V739	0.999	NULL	NULL	-	no_errors	SYNPO	HGNC	ENSG00000171992				172	0	0	63	25	28.4091
SLC36A1	0	genome.wustl.edu	37	5	150867571	150867571	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	150867571	150867571	T	C	SNP	SLC36A1	ENST00000243389	human	ensembl	74_37	+1	known	missense	c.1187	p.L396P	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643				94	0	0	27	15	35.7143
FAT2	0	genome.wustl.edu	37	5	150945734	150945734	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	150945734	150945734	T	C	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.2759	p.D920G	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				64	0	0	28	15	34.8837
KIF4B	0	genome.wustl.edu	37	5	154394309	154394309	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	154394309	154394309	T	C	SNP	KIF4B	ENST00000435029	human	ensembl	74_37	+1	known	missense	c.890	p.L297P	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650				313	0	0	155	66	29.8643
ADAM19	0	genome.wustl.edu	37	5	156918635	156918635	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	156918635	156918635	T	C	SNP	ADAM19	ENST00000394020	human	ensembl	74_37	-1	known	missense	c.2089	p.M697V	0.998	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074				19	0	0	11	5	31.25
SOX30	0	genome.wustl.edu	37	5	157078216	157078216	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	157078216	157078216	G	T	SNP	SOX30	ENST00000265007	human	ensembl	74_37	-1	known	missense	c.871	p.L291M	0.982	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX30	HGNC	ENSG00000039600				209	0	0	65	30	31.5789
MIR146A	0	genome.wustl.edu	37	5	159912359	159912359	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	159912359	159912359	C	T	SNP	MIR146A	ENST00000385201	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	MIR146A	HGNC	ENSG00000253522				24	0	0	29	2	6.45161
DOCK2	0	genome.wustl.edu	37	5	169141166	169141166	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	169141166	169141166	T	C	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	silent	c.1794	p.D598	0.985	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				100	0	0	41	13	24.0741
DOCK2	0	genome.wustl.edu	37	5	169435557	169435557	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	169435557	169435557	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	silent	c.3129	p.Q1043	1.000	superfamily_ARM-type_fold,superfamily_Ferritin-like_SF	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				118	0	0	70	5	6.66667
LCP2	0	genome.wustl.edu	37	5	169679461	169679461	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	169679461	169679461	C	T	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	missense	c.1300	p.A434T	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462				19	0	0	17	3	15
NPM1	0	genome.wustl.edu	37	5	170827872	170827872	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	170827872	170827872	A	G	SNP	NPM1	ENST00000296930	human	ensembl	74_37	+1	known	silent	c.612	p.A204	1.000	NULL	superfamily_Nucleoplasmin_core_dom	-	no_errors	NPM1	HGNC	ENSG00000181163				60	0	0	50	14	21.875
NKX2-5	0	genome.wustl.edu	37	5	172660103	172660103	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	172660103	172660103	C	T	SNP	NKX2-5	ENST00000329198	human	ensembl	74_37	-1	known	silent	c.444	p.A148	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-5	HGNC	ENSG00000183072				14	0	0	7	3	30
CPEB4	0	genome.wustl.edu	37	5	173317507	173317507	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	173317507	173317507	T	C	SNP	CPEB4	ENST00000265085	human	ensembl	74_37	+1	known	silent	c.771	p.H257	0.998	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742				328	0	0	147	39	20.9677
DOK3	0	genome.wustl.edu	37	5	176931771	176931771	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	176931771	176931771	G	T	SNP	DOK3	ENST00000357198	human	ensembl	74_37	-1	known	missense	c.786	p.H262Q	0.384	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK3	HGNC	ENSG00000146094				117	0	0	35	20	36.3636
PHYKPL	0	genome.wustl.edu	37	5	177651531	177651531	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	177651531	177651531	C	T	SNP	PHYKPL	ENST00000308158	human	ensembl	74_37	-1	known	missense	c.536	p.R179Q	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	PHYKPL	HGNC	ENSG00000175309				83	0	0	34	18	34.6154
FLT4	0	genome.wustl.edu	37	5	180046068	180046068	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	180046068	180046068	G	T	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.2803	p.L935I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				15	0	0	3	2	40
GUSBP1	0	genome.wustl.edu	37	5	21459663	21459663	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	21459663	21459663	C	T	SNP	GUSBP1	ENST00000508973	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GUSBP1	HGNC	ENSG00000183666				221	0	0	50	28	35.8974
CDH10	0	genome.wustl.edu	37	5	24487830	24487830	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	24487830	24487830	G	C	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.2309	p.P770R	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				270	0	0	116	60	34.0909
CDH10	0	genome.wustl.edu	37	5	24492959	24492959	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	24492959	24492959	C	T	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.1591	p.V531I	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				204	0	0	141	47	25
IRX2	0	genome.wustl.edu	37	5	2748625	2748625	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	2748625	2748625	G	A	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	silent	c.1197	p.N399	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				119	0	0	20	12	37.5
CDH6	0	genome.wustl.edu	37	5	31313439	31313439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	31313439	31313439	G	A	SNP	CDH6	ENST00000265071	human	ensembl	74_37	+1	known	missense	c.1268	p.R423Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361				189	1	0.526316	95	38	28.5714
C5orf22	0	genome.wustl.edu	37	5	31534463	31534463	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	31534463	31534463	G	T	SNP	C5orf22	ENST00000325366	human	ensembl	74_37	+1	known	missense	c.166	p.D56Y	1.000	NULL	superfamily_ICAT	-	no_errors	C5orf22	HGNC	ENSG00000082213				138	0	0	72	31	30.0971
ADAMTS12	0	genome.wustl.edu	37	5	33881309	33881309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	33881309	33881309	G	A	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.404	p.S135F	0.688	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				140	0	0	74	31	29.5238
RAI14	0	genome.wustl.edu	37	5	34823885	34823885	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	34823885	34823885	C	T	SNP	RAI14	ENST00000515799	human	ensembl	74_37	+1	known	silent	c.1947	p.S649	0.539	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_t-SNARE,superfamily_UBA-like,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560				116	0	0	48	22	31.4286
NIPBL	0	genome.wustl.edu	37	5	37027460	37027460	+	Splice_Site	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	37027460	37027460	G	T	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	splice_site	c.5809-1	e31-1	1.000	-	-	-	no_errors	NIPBL	HGNC	ENSG00000164190				151	0	0	72	38	34.5455
NUP155	0	genome.wustl.edu	37	5	37309266	37309266	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	37309266	37309266	A	G	SNP	NUP155	ENST00000231498	human	ensembl	74_37	-1	known	missense	c.2732	p.V911A	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569				68	0	0	30	18	37.5
DAB2	0	genome.wustl.edu	37	5	39376883	39376883	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	39376883	39376883	C	T	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	missense	c.2006	p.R669Q	1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				77	0	0	37	19	33.9286
NNT	0	genome.wustl.edu	37	5	43653189	43653189	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	43653189	43653189	C	T	SNP	NNT	ENST00000264663	human	ensembl	74_37	+1	known	missense	c.1933	p.R645C	1.000	pfam_NADH_DH_b	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992				87	0	0	36	22	37.931
ADAMTS6	0	genome.wustl.edu	37	5	64510656	64510656	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	64510656	64510656	T	C	SNP	ADAMTS6	ENST00000381055	human	ensembl	74_37	-1	known	missense	c.2540	p.Q847R	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192				127	0	0	83	9	9.78261
TMEM171	0	genome.wustl.edu	37	5	72424344	72424344	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	72424344	72424344	T	A	SNP	TMEM171	ENST00000454765	human	ensembl	74_37	+1	known	missense	c.768	p.S256R	1.000	NULL	NULL	-	no_errors	TMEM171	HGNC	ENSG00000157111				182	0	0	116	11	8.66142
GFM2	0	genome.wustl.edu	37	5	74028896	74028896	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	74028896	74028896	T	C	SNP	GFM2	ENST00000296805	human	ensembl	74_37	-1	known	missense	c.1538	p.Q513R	1.000	superfamily_EFG_III-V	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_EFG_III-V,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM2	HGNC	ENSG00000164347				142	0	0	61	6	8.95522
COL4A3BP	0	genome.wustl.edu	37	5	74712780	74712780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	74712780	74712780	G	A	SNP	COL4A3BP	ENST00000380494	human	ensembl	74_37	-1	known	missense	c.1142	p.A381V	1.000	NULL	pfam_START_lipid-bd_dom,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_START_lipid-bd_dom,pfscan_Pleckstrin_homology,pfscan_START_lipid-bd_dom	-	no_errors	COL4A3BP	HGNC	ENSG00000113163				138	0	0	74	45	37.8151
IQGAP2	0	genome.wustl.edu	37	5	75954396	75954396	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	75954396	75954396	A	G	SNP	IQGAP2	ENST00000274364	human	ensembl	74_37	+1	known	silent	c.2433	p.V811	0.962	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703				98	0	0	63	21	25
CMYA5	0	genome.wustl.edu	37	5	79034641	79034641	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	79034641	79034641	T	C	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.10053	p.R3351	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				107	0	0	44	34	43.5897
GPR98	0	genome.wustl.edu	37	5	89949699	89949699	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	89949699	89949699	C	A	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	silent	c.4308	p.I1436	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				17	0	0	11	8	42.1053
SEMA5A	0	genome.wustl.edu	37	5	9154802	9154802	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	9154802	9154802	C	T	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.1279	p.G427R	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				138	0	0	37	19	33.9286
CCNC	0	genome.wustl.edu	37	6	100016436	100016436	+	RNA	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	100016436	100016436	G	C	SNP	CCNC	ENST00000521017	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	CCNC	HGNC	ENSG00000112237				24	0	0	6	2	25
GRIK2	0	genome.wustl.edu	37	6	102074414	102074414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	102074414	102074414	G	A	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	missense	c.443	p.S148N	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				143	0	0	79	41	34.1667
C6orf203	0	genome.wustl.edu	37	6	107361107	107361107	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	107361107	107361107	C	T	SNP	C6orf203	ENST00000443043	human	ensembl	74_37	+1	known	missense	c.158	p.T53I	0.002	NULL	NULL	-	no_errors	C6orf203	HGNC	ENSG00000130349				156	0	0	86	30	25.8621
BEND3	0	genome.wustl.edu	37	6	107391396	107391396	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	107391396	107391396	G	A	SNP	BEND3	ENST00000369042	human	ensembl	74_37	-1	known	silent	c.999	p.N333	0.999	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409				42	0	0	20	20	50
LACE1	0	genome.wustl.edu	37	6	108616409	108616409	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	108616409	108616409	G	T	SNP	LACE1	ENST00000368977	human	ensembl	74_37	+1	known	missense	c.126	p.K42N	0.922	NULL	pfam_ATPase_AFG1-like,superfamily_P-loop_NTPase	-	no_errors	LACE1	HGNC	ENSG00000135537				92	0	0	40	18	31.0345
AK9	0	genome.wustl.edu	37	6	109863251	109863251	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	109863251	109863251	G	A	SNP	AK9	ENST00000424296	human	ensembl	74_37	-1	known	missense	c.3349	p.R1117C	0.992	pfam_Adenylate_kin,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085				30	0	0	22	6	21.4286
SLC22A16	0	genome.wustl.edu	37	6	110746270	110746270	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	110746270	110746270	C	T	SNP	SLC22A16	ENST00000368919	human	ensembl	74_37	-1	known	missense	c.1540	p.A514T	0.402	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A16	HGNC	ENSG00000004809				103	0	0	55	31	36.0465
REV3L	0	genome.wustl.edu	37	6	111688943	111688943	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	111688943	111688943	G	A	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	silent	c.6048	p.Y2016	0.990	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				191	0	0	104	61	36.9697
NEDD9	0	genome.wustl.edu	37	6	11193914	11193914	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	11193914	11193914	G	A	SNP	NEDD9	ENST00000379446	human	ensembl	74_37	-1	known	silent	c.471	p.P157	0.106	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859				89	0	0	24	14	36.8421
RFX6	0	genome.wustl.edu	37	6	117240336	117240336	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	117240336	117240336	G	A	SNP	RFX6	ENST00000332958	human	ensembl	74_37	+1	known	nonsense	c.1059	p.W353*	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002				118	0	0	74	28	27.451
TBC1D32	0	genome.wustl.edu	37	6	121625975	121625975	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	121625975	121625975	C	T	SNP	TBC1D32	ENST00000275159	human	ensembl	74_37	-1	putative	missense	c.695	p.R232Q	0.997	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	TBC1D32	HGNC	ENSG00000146350				78	0	0	35	15	30
BCLAF1	0	genome.wustl.edu	37	6	136599301	136599301	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	136599301	136599301	A	G	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.718	p.S240P	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				195	0	0	151	38	20.1058
KIAA1244	0	genome.wustl.edu	37	6	138640990	138640990	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	138640990	138640990	A	C	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	missense	c.4625	p.E1542A	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379				109	0	0	68	31	31.3131
GRM1	0	genome.wustl.edu	37	6	146350787	146350787	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	146350787	146350787	T	C	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.134	p.V45A	1.000	superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				236	0	0	53	31	36.9048
GRM1	0	genome.wustl.edu	37	6	146625839	146625839	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	146625839	146625839	G	T	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.1043	p.R348M	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				86	0	0	29	17	36.9565
GRM1	0	genome.wustl.edu	37	6	146755301	146755301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	146755301	146755301	C	T	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.2954	p.A985V	0.007	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				176	0	0	82	37	31.0924
GRM1	0	genome.wustl.edu	37	6	146755495	146755495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	146755495	146755495	G	A	SNP	GRM1	ENST00000282753	human	ensembl	74_37	+1	known	missense	c.3148	p.A1050T	0.476	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt_1,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_5	-	no_errors	GRM1	HGNC	ENSG00000152822				121	0	0	49	32	39.5062
SASH1	0	genome.wustl.edu	37	6	148848672	148848672	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	148848672	148848672	A	G	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	silent	c.1368	p.S456	0.147	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				141	0	0	58	35	37.6344
NUP43	0	genome.wustl.edu	37	6	150048223	150048223	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	150048223	150048223	A	G	SNP	NUP43	ENST00000340413	human	ensembl	74_37	-1	known	missense	c.1025	p.I342T	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NUP43	HGNC	ENSG00000120253				109	0	0	46	24	34.2857
MYLIP	0	genome.wustl.edu	37	6	16145267	16145267	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	16145267	16145267	T	C	SNP	MYLIP	ENST00000356840	human	ensembl	74_37	+1	known	missense	c.967	p.Y323H	0.997	NULL	pfam_FERM_N,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,pfscan_Znf_RING,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	MYLIP	HGNC	ENSG00000007944				272	0	0	116	63	35.1955
T	0	genome.wustl.edu	37	6	166572000	166572000	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	166572000	166572000	G	T	SNP	T	ENST00000296946	human	ensembl	74_37	-1	known	missense	c.1111	p.L371M	0.992	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_Brachyury,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	T	HGNC	ENSG00000164458				58	0	0	22	12	35.2941
MPC1	0	genome.wustl.edu	37	6	166778930	166778930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	166778930	166778930	G	A	SNP	MPC1	ENST00000341756	human	ensembl	74_37	-1	known	missense	c.317	p.T106M	0.119	pfam_MPC	pfam_MPC	-	no_errors	MPC1	HGNC	ENSG00000060762				14	0	0	6	6	50
RPS6KA2	0	genome.wustl.edu	37	6	166831826	166831826	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	166831826	166831826	T	C	SNP	RPS6KA2	ENST00000510118	human	ensembl	74_37	-1	known	missense	c.1900	p.T634A	0.981	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242				134	0	0	52	7	11.8644
TCP10L2	0	genome.wustl.edu	37	6	167587432	167587432	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	167587432	167587432	C	T	SNP	TCP10L2	ENST00000283507	human	ensembl	74_37	+1	known	silent	c.336	p.H112	0.000	NULL	NULL	-	no_errors	TCP10L2	HGNC	ENSG00000166984				61	0	0	24	14	36.8421
PRL	0	genome.wustl.edu	37	6	22297194	22297194	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	22297194	22297194	C	T	SNP	PRL	ENST00000306482	human	ensembl	74_37	-1	known	silent	c.18	p.S6	0.000	NULL	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	PRL	HGNC	ENSG00000172179				45	0	0	22	3	12
HFE	0	genome.wustl.edu	37	6	26093138	26093138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	26093138	26093138	C	T	SNP	HFE	ENST00000357618	human	ensembl	74_37	+1	known	missense	c.842	p.T281M	0.040	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HFE	HGNC	ENSG00000010704				91	0	0	54	18	25
HIST1H1E	0	genome.wustl.edu	37	6	26156700	26156700	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	26156700	26156700	G	T	SNP	HIST1H1E	ENST00000304218	human	ensembl	74_37	+1	known	missense	c.82	p.A28S	0.308	prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1E	HGNC	ENSG00000168298				170	0	0	59	25	29.7619
HIST1H2BE	0	genome.wustl.edu	37	6	26184252	26184252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	26184252	26184252	G	A	SNP	HIST1H2BE	ENST00000356530	human	ensembl	74_37	+1	known	missense	c.229	p.E77K	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BE	HGNC	ENSG00000197697				295	0	0	106	59	35.7576
HIST1H4E	0	genome.wustl.edu	37	6	26205129	26205129	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	26205129	26205129	A	G	SNP	HIST1H4E	ENST00000360441	human	ensembl	74_37	+1	known	missense	c.257	p.D86G	1.000	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4E	HGNC	ENSG00000198518				113	0	0	59	16	21.3333
BTN3A1	0	genome.wustl.edu	37	6	26406328	26406328	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	26406328	26406328	T	C	SNP	BTN3A1	ENST00000289361	human	ensembl	74_37	+1	known	missense	c.277	p.Y93H	0.019	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN3A1	HGNC	ENSG00000026950				82	0	0	56	12	17.6471
ABT1	0	genome.wustl.edu	37	6	26598802	26598802	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	26598802	26598802	C	A	SNP	ABT1	ENST00000274849	human	ensembl	74_37	+1	known	missense	c.748	p.L250M	1.000	NULL	NULL	-	no_errors	ABT1	HGNC	ENSG00000146109				96	0	0	39	15	27.7778
HIST1H2BJ	0	genome.wustl.edu	37	6	27100151	27100151	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	27100151	27100151	A	G	SNP	HIST1H2BJ	ENST00000339812	human	ensembl	74_37	-1	known	nonstop	c.379	p.*127Q	0.998	NULL	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BJ	HGNC	ENSG00000124635				144	0	0	50	33	39.759
SCAND3	0	genome.wustl.edu	37	6	28541255	28541255	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	28541255	28541255	C	A	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.2411	p.S804I	0.703	NULL	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				123	0	0	81	45	35.7143
MAS1L	0	genome.wustl.edu	37	6	29454570	29454570	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	29454570	29454570	C	T	SNP	MAS1L	ENST00000377127	human	ensembl	74_37	-1	known	silent	c.1110	p.R370	0.012	NULL	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	MAS1L	HGNC	ENSG00000204687				147	0	0	82	23	21.9048
TRIM10	0	genome.wustl.edu	37	6	30121844	30121844	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	30121844	30121844	G	A	SNP	TRIM10	ENST00000449742	human	ensembl	74_37	-1	known	nonsense	c.1348	p.R450*	0.001	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM10	HGNC	ENSG00000204613				90	0	0	36	17	32.0755
PPP1R10	0	genome.wustl.edu	37	6	30575625	30575625	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	30575625	30575625	T	C	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	missense	c.374	p.E125G	1.000	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				270	0	0	128	27	17.4194
BPHL	0	genome.wustl.edu	37	6	3119739	3119739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	3119739	3119739	C	T	SNP	BPHL	ENST00000380375	human	ensembl	74_37	+1	known	missense	c.49	p.H17Y	0.001	NULL	pfam_AB_hydrolase_1	-	no_errors	BPHL	HGNC	ENSG00000137274				123	0	0	71	20	21.978
NFKBIL1	0	genome.wustl.edu	37	6	31525892	31525892	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	31525892	31525892	A	G	SNP	NFKBIL1	ENST00000376148	human	ensembl	74_37	+1	known	missense	c.650	p.Q217R	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NFKBIL1	HGNC	ENSG00000204498				47	0	0	14	2	12.5
LST1	0	genome.wustl.edu	37	6	31556429	31556429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	31556429	31556429	C	T	SNP	LST1	ENST00000376111	human	ensembl	74_37	+1	known	missense	c.104	p.A35V	0.960	NULL	NULL	-	no_errors	LST1	HGNC	ENSG00000204482				78	0	0	34	18	34.6154
C6orf10	0	genome.wustl.edu	37	6	32261427	32261427	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	32261427	32261427	A	G	SNP	C6orf10	ENST00000447241	human	ensembl	74_37	-1	known	silent	c.1023	p.S341	0.003	NULL	NULL	-	no_errors	C6orf10	HGNC	ENSG00000204296				182	0	0	113	56	33.1361
HLA-DQB1	0	genome.wustl.edu	37	6	32627968	32627968	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	32627968	32627968	T	C	SNP	HLA-DQB1	ENST00000460185	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HLA-DQB1	HGNC	ENSG00000179344				70	0	0	18	6	25
TAP2	0	genome.wustl.edu	37	6	32798079	32798079	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	32798079	32798079	T	C	SNP	TAP2	ENST00000374897	human	ensembl	74_37	-1	known	missense	c.1600	p.I534V	0.005	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B3,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP2	HGNC	ENSG00000204267				234	0	0	95	12	11.215
BAK1	0	genome.wustl.edu	37	6	33543094	33543094	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	33543094	33543094	A	G	SNP	BAK1	ENST00000360661	human	ensembl	74_37	-1	known	missense	c.331	p.F111L	0.945	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAK1	HGNC	ENSG00000030110				92	0	0	61	4	6.15385
BAK1	0	genome.wustl.edu	37	6	33543097	33543097	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	33543097	33543097	A	G	SNP	BAK1	ENST00000360661	human	ensembl	74_37	-1	known	missense	c.328	p.Y110H	0.015	pfam_Blc2_fam,pfscan_Bcl2-like	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAK1	HGNC	ENSG00000030110				92	0	0	48	19	28.3582
ITPR3	0	genome.wustl.edu	37	6	33636774	33636774	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	33636774	33636774	C	G	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.2030	p.A677G	0.994	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				87	0	0	44	10	18.5185
SPDEF	0	genome.wustl.edu	37	6	34512185	34512185	+	Silent	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	34512185	34512185	G	C	SNP	SPDEF	ENST00000374037	human	ensembl	74_37	-1	known	silent	c.48	p.L16	0.999	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPDEF	HGNC	ENSG00000124664				38	0	0	23	8	25.8065
C6orf106	0	genome.wustl.edu	37	6	34574621	34574621	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	34574621	34574621	A	G	SNP	C6orf106	ENST00000374023	human	ensembl	74_37	-1	known	missense	c.572	p.L191P	1.000	NULL	superfamily_UBA-like	-	no_errors	C6orf106	HGNC	ENSG00000196821				160	0	0	81	31	27.6786
CLPS	0	genome.wustl.edu	37	6	35762936	35762936	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	35762936	35762936	C	T	SNP	CLPS	ENST00000259938	human	ensembl	74_37	-1	known	missense	c.326	p.R109H	0.001	smart_Colipase	pfam_Colipase_C,pfam_Colipase_N,smart_Colipase,prints_Colipase	-	no_errors	CLPS	HGNC	ENSG00000137392				128	0	0	59	12	16.9014
PNPLA1	0	genome.wustl.edu	37	6	36269647	36269647	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	36269647	36269647	A	G	SNP	PNPLA1	ENST00000457797	human	ensembl	74_37	+1	known	missense	c.788	p.Y263C	0.108	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA1	HGNC	ENSG00000180316				137	0	0	65	4	5.7971
CPNE5	0	genome.wustl.edu	37	6	36709965	36709965	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	36709965	36709965	A	G	SNP	CPNE5	ENST00000459703	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CPNE5	HGNC	ENSG00000124772				21	0	0	7	3	30
CPNE5	0	genome.wustl.edu	37	6	36767803	36767803	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	36767803	36767803	G	A	SNP	CPNE5	ENST00000244751	human	ensembl	74_37	-1	known	silent	c.228	p.F76	0.999	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE5	HGNC	ENSG00000124772				76	0	0	40	4	9.09091
KCNK5	0	genome.wustl.edu	37	6	39161960	39161960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	39161960	39161960	C	T	SNP	KCNK5	ENST00000359534	human	ensembl	74_37	-1	known	missense	c.619	p.G207S	1.000	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK5	HGNC	ENSG00000164626				131	0	0	40	20	33.3333
PPP2R5D	0	genome.wustl.edu	37	6	42975937	42975937	+	Splice_Site	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	42975937	42975937	A	G	SNP	PPP2R5D	ENST00000485511	human	ensembl	74_37	+1	known	splice_site	c.858-2	e8-2	1.000	-	-	-	no_errors	PPP2R5D	HGNC	ENSG00000112640				358	0	0	127	42	24.8521
MRPL2	0	genome.wustl.edu	37	6	43023644	43023644	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	43023644	43023644	G	A	SNP	MRPL2	ENST00000388752	human	ensembl	74_37	-1	known	nonsense	c.622	p.R208*	1.000	pfam_Ribosomal_L2_C,superfamily_Translation_prot_SH3-like	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold	-	no_errors	MRPL2	HGNC	ENSG00000112651				52	0	0	26	9	25.7143
PTK7	0	genome.wustl.edu	37	6	43098273	43098273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	43098273	43098273	T	C	SNP	PTK7	ENST00000230419	human	ensembl	74_37	+1	known	missense	c.686	p.L229P	1.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK7	HGNC	ENSG00000112655				40	0	0	32	16	33.3333
ZNF318	0	genome.wustl.edu	37	6	43325442	43325442	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	43325442	43325442	G	A	SNP	ZNF318	ENST00000361428	human	ensembl	74_37	-1	known	nonsense	c.610	p.R204*	0.996	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467				248	0	0	84	44	34.375
LRRC73	0	genome.wustl.edu	37	6	43475025	43475025	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	43475025	43475025	A	G	SNP	LRRC73	ENST00000372441	human	ensembl	74_37	-1	novel	missense	c.902	p.L301P	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC73	HGNC	ENSG00000204052				52	0	0	33	5	13.1579
SUPT3H	0	genome.wustl.edu	37	6	44988338	44988338	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	44988338	44988338	C	T	SNP	SUPT3H	ENST00000371460	human	ensembl	74_37	-1	known	missense	c.251	p.R84Q	0.961	pfam_TFIID-18	pfam_TFIID-18,superfamily_Histone-fold	-	no_errors	SUPT3H	HGNC	ENSG00000196284				104	0	0	49	26	34.6667
RUNX2	0	genome.wustl.edu	37	6	45296155	45296155	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	45296155	45296155	A	G	SNP	RUNX2	ENST00000352853	human	ensembl	74_37	+1	known	silent	c.96	p.L32	1.000	NULL	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813				92	0	0	36	10	21.7391
GPR111	0	genome.wustl.edu	37	6	47647856	47647856	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	47647856	47647856	T	C	SNP	GPR111	ENST00000296862	human	ensembl	74_37	+1	known	missense	c.521	p.V174A	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR111	HGNC	ENSG00000164393				103	0	0	65	18	21.6867
MUT	0	genome.wustl.edu	37	6	49407996	49407996	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	49407996	49407996	G	T	SNP	MUT	ENST00000274813	human	ensembl	74_37	-1	known	missense	c.1879	p.H627N	1.000	pfam_Cobalamin-bd,superfamily_Cobalamin-bd,tigrfam_Acid_CoA_mut_C	pfam_MeMalonylCoA_mutase_a/b_cat,pfam_Cobalamin-bd,superfamily_Cbl-dep_enz_cat,superfamily_Cobalamin-bd,tigrfam_MMCoA_mutase_a_cat,tigrfam_Acid_CoA_mut_C	-	no_errors	MUT	HGNC	ENSG00000146085				152	0	0	75	43	36.4407
LYRM4	0	genome.wustl.edu	37	6	5216852	5216852	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	5216852	5216852	T	G	SNP	LYRM4	ENST00000500576	human	ensembl	74_37	-1	known	missense	c.206	p.Q69P	1.000	pfam_Complex1_LYR	pfam_Complex1_LYR	-	no_errors	LYRM4	HGNC	ENSG00000214113				126	0	0	64	26	28.8889
TRAM2	0	genome.wustl.edu	37	6	52370497	52370497	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	52370497	52370497	T	C	SNP	TRAM2	ENST00000182527	human	ensembl	74_37	-1	known	missense	c.775	p.I259V	1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM2	HGNC	ENSG00000065308				157	0	0	87	11	11.2245
DST	0	genome.wustl.edu	37	6	56394279	56394279	+	Silent	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	56394279	56394279	A	T	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.17469	p.T5823	0.442	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				74	0	0	69	21	23.3333
KIAA1586	0	genome.wustl.edu	37	6	56918192	56918192	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	56918192	56918192	A	G	SNP	KIAA1586	ENST00000370733	human	ensembl	74_37	+1	known	missense	c.895	p.M299V	1.000	NULL	superfamily_RNaseH-like_dom	-	no_errors	KIAA1586	HGNC	ENSG00000168116				68	0	0	41	21	33.871
LMBRD1	0	genome.wustl.edu	37	6	70428896	70428896	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	70428896	70428896	A	G	SNP	LMBRD1	ENST00000370577	human	ensembl	74_37	-1	known	silent	c.714	p.T238	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216				53	0	0	28	17	37.7778
RIMS1	0	genome.wustl.edu	37	6	72892051	72892051	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	72892051	72892051	G	A	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.877	p.V293M	0.996	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				96	0	0	30	18	37.5
BMP6	0	genome.wustl.edu	37	6	7727352	7727352	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	7727352	7727352	A	C	SNP	BMP6	ENST00000283147	human	ensembl	74_37	+1	known	missense	c.164	p.Q55P	0.569	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162				10	0	0	0	2	100
HTR1B	0	genome.wustl.edu	37	6	78172894	78172894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	78172894	78172894	C	T	SNP	HTR1B	ENST00000369947	human	ensembl	74_37	-1	known	missense	c.227	p.R76Q	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_ADR_fam	-	no_errors	HTR1B	HGNC	ENSG00000135312				361	0	0	105	30	22.2222
PHIP	0	genome.wustl.edu	37	6	79726328	79726328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	79726328	79726328	G	A	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	missense	c.1168	p.R390C	0.941	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247				234	0	0	91	54	37.2414
TBX18	0	genome.wustl.edu	37	6	85446984	85446984	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	85446984	85446984	C	T	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	missense	c.1243	p.A415T	0.999	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				162	0	0	58	28	32.5581
CGA	0	genome.wustl.edu	37	6	87797872	87797872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	87797872	87797872	G	A	SNP	CGA	ENST00000369582	human	ensembl	74_37	-1	known	missense	c.47	p.S16L	1.000	NULL	pfam_Glyco_hormone,smart_Glyco_hormone,pfscan_Glyco_hormone,prints_Glyco_hormone	-	no_errors	CGA	HGNC	ENSG00000135346				33	0	0	9	10	52.6316
ZNF292	0	genome.wustl.edu	37	6	87967380	87967380	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	87967380	87967380	A	T	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	nonsense	c.4033	p.K1345*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				30	0	0	14	9	39.1304
C6orf165	0	genome.wustl.edu	37	6	88144681	88144681	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	88144681	88144681	C	A	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	missense	c.1404	p.D468E	0.044	pfam_DUF3508	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				81	0	0	54	22	28.9474
PNISR	0	genome.wustl.edu	37	6	99856034	99856034	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	99856034	99856034	A	T	SNP	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	missense	c.787	p.L263M	0.163	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				120	0	0	52	30	36.5854
ZAN	0	genome.wustl.edu	37	7	100348327	100348327	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	100348327	100348327	C	T	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	silent	c.1329	p.C443	0.551	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				35	0	0	20	6	23.0769
ACHE	0	genome.wustl.edu	37	7	100491723	100491723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	100491723	100491723	C	T	SNP	ACHE	ENST00000302913	human	ensembl	74_37	-1	known	missense	c.131	p.R44H	0.001	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085				18	0	0	9	2	18.1818
PLOD3	0	genome.wustl.edu	37	7	100849593	100849593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	100849593	100849593	C	T	SNP	PLOD3	ENST00000223127	human	ensembl	74_37	-1	known	missense	c.2186	p.R729H	1.000	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397				221	0	0	38	28	42.4242
CUX1	0	genome.wustl.edu	37	7	101837135	101837135	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	101837135	101837135	A	G	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	missense	c.1123	p.M375V	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				57	0	0	23	12	34.2857
SPDYE2	0	genome.wustl.edu	37	7	102197663	102197663	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	102197663	102197663	G	A	SNP	SPDYE2	ENST00000507918	human	ensembl	74_37	+1	known	silent	c.663	p.S221	0.044	pfam_Cell_cycle_regulatory_Spy1	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE2	HGNC	ENSG00000205238				17	0	0	12	4	25
POLR2J3	0	genome.wustl.edu	37	7	102213002	102213002	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	102213002	102213002	T	C	SNP	POLR2J3	ENST00000443430	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POLR2J3	HGNC	ENSG00000168255				94	0	0	42	8	16
ORC5	0	genome.wustl.edu	37	7	103808969	103808969	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	103808969	103808969	G	A	SNP	ORC5	ENST00000297431	human	ensembl	74_37	-1	known	nonsense	c.829	p.Q277*	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	ORC5	HGNC	ENSG00000164815				127	0	0	54	21	28
KMT2E	0	genome.wustl.edu	37	7	104753084	104753084	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	104753084	104753084	C	A	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	silent	c.4881	p.P1627	0.436	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				190	0	0	51	42	45.1613
NRCAM	0	genome.wustl.edu	37	7	107807391	107807391	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	107807391	107807391	T	C	SNP	NRCAM	ENST00000379028	human	ensembl	74_37	-1	known	silent	c.3441	p.S1147	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NRCAM	HGNC	ENSG00000091129				51	0	0	15	12	44.4444
LRRN3	0	genome.wustl.edu	37	7	110763371	110763371	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	110763371	110763371	T	C	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	silent	c.543	p.S181	0.899	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				113	0	0	65	36	35.6436
THSD7A	0	genome.wustl.edu	37	7	11501698	11501698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	11501698	11501698	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	missense	c.2441	p.C814Y	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				195	0	0	83	45	35.1562
MET	0	genome.wustl.edu	37	7	116381068	116381068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	116381068	116381068	G	A	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	missense	c.1690	p.A564T	0.001	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_IPT,superfamily_Ig_E-set,smart_IPT	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				163	0	0	64	37	36.6337
GPR37	0	genome.wustl.edu	37	7	124404154	124404154	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	124404154	124404154	G	A	SNP	GPR37	ENST00000303921	human	ensembl	74_37	-1	known	missense	c.877	p.R293W	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37	HGNC	ENSG00000170775				142	0	0	88	42	32.3077
LRRC4	0	genome.wustl.edu	37	7	127669309	127669309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	127669309	127669309	G	A	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.1385	p.T462M	0.996	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				206	0	0	84	48	36.3636
LRRC4	0	genome.wustl.edu	37	7	127669674	127669674	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	127669674	127669674	G	A	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	silent	c.1020	p.L340	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				51	0	0	24	7	22.5806
FLNC	0	genome.wustl.edu	37	7	128498158	128498158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	128498158	128498158	G	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.7877	p.S2626N	1.000	NULL	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				112	0	0	28	4	12.5
ATP6V1F	0	genome.wustl.edu	37	7	128505608	128505608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	128505608	128505608	G	A	SNP	ATP6V1F	ENST00000249289	human	ensembl	74_37	+1	known	missense	c.336	p.M112I	1.000	pirsf_ATPase_V1-cplx_fsu_euk,tigrfam_ATPase_V1-cplx_fsu_euk	pfam_ATPase_V1-cplx_f_g_su,pirsf_ATPase_V1-cplx_fsu_euk,tigrfam_ATPase_V1-cplx_fsu_euk	-	no_errors	ATP6V1F	HGNC	ENSG00000128524				52	0	0	20	8	28.5714
MIR29B1	0	genome.wustl.edu	37	7	130561524	130561524	+	RNA	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	130561524	130561524	T	A	SNP	MIR29B1	ENST00000362111	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR29B1	HGNC	ENSG00000226380				55	0	0	20	10	33.3333
NUP205	0	genome.wustl.edu	37	7	135269586	135269586	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	135269586	135269586	C	A	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	missense	c.1049	p.A350E	1.000	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				51	0	0	19	13	40.625
DGKI	0	genome.wustl.edu	37	7	137151673	137151673	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	137151673	137151673	C	T	SNP	DGKI	ENST00000424189	human	ensembl	74_37	-1	novel	missense	c.2522	p.R841H	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680				90	0	0	40	12	23.0769
HIPK2	0	genome.wustl.edu	37	7	139285327	139285327	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	139285327	139285327	G	A	SNP	HIPK2	ENST00000406875	human	ensembl	74_37	-1	known	silent	c.2271	p.H757	0.723	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393				142	0	0	35	24	40.678
AGK	0	genome.wustl.edu	37	7	141352635	141352635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	141352635	141352635	C	T	SNP	AGK	ENST00000355413	human	ensembl	74_37	+1	known	missense	c.1180	p.P394S	1.000	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	AGK	HGNC	ENSG00000006530				183	0	0	76	33	30.2752
MGAM	0	genome.wustl.edu	37	7	141778765	141778765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	141778765	141778765	G	A	SNP	MGAM	ENST00000475668	human	ensembl	74_37	+1	putative	missense	c.5804	p.R1935H	0.825	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				72	0	0	37	35	48.6111
ZYX	0	genome.wustl.edu	37	7	143085726	143085726	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	143085726	143085726	C	A	SNP	ZYX	ENST00000322764	human	ensembl	74_37	+1	known	missense	c.1289	p.A430E	0.269	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZYX	HGNC	ENSG00000159840				123	1	0.806452	47	24	33.8028
EPHA1	0	genome.wustl.edu	37	7	143096798	143096798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	143096798	143096798	G	A	SNP	EPHA1	ENST00000275815	human	ensembl	74_37	-1	known	missense	c.781	p.R261W	0.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904				128	0	0	45	22	32.8358
LRRC61	0	genome.wustl.edu	37	7	150034380	150034380	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	150034380	150034380	C	A	SNP	LRRC61	ENST00000323078	human	ensembl	74_37	+1	known	missense	c.430	p.P144T	0.928	NULL	pfam_Leu-rich_rpt	-	no_errors	LRRC61	HGNC	ENSG00000127399				80	0	0	21	13	38.2353
DPP6	0	genome.wustl.edu	37	7	154672632	154672632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	154672632	154672632	C	T	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	missense	c.2113	p.R705C	0.891	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				123	0	0	15	18	54.5455
RBM33	0	genome.wustl.edu	37	7	155538000	155538000	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	155538000	155538000	C	T	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	missense	c.2683	p.P895S	0.218	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				30	0	0	12	10	45.4545
CDCA7L	0	genome.wustl.edu	37	7	21946038	21946038	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	21946038	21946038	G	A	SNP	CDCA7L	ENST00000406877	human	ensembl	74_37	-1	known	nonsense	c.790	p.Q264*	1.000	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7L	HGNC	ENSG00000164649				257	0	0	82	37	31.0924
FTSJ2	0	genome.wustl.edu	37	7	2274830	2274830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	2274830	2274830	C	T	SNP	FTSJ2	ENST00000242257	human	ensembl	74_37	-1	known	missense	c.668	p.S223N	1.000	pfam_rRNA_MeTrfase_FtsJ_dom,pirsf_rRNA-MeTfrase_E	pfam_rRNA_MeTrfase_FtsJ_dom,pirsf_rRNA-MeTfrase_E	-	no_errors	FTSJ2	HGNC	ENSG00000122687				164	0	0	90	43	32.3308
IGF2BP3	0	genome.wustl.edu	37	7	23509592	23509592	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	23509592	23509592	G	A	SNP	IGF2BP3	ENST00000258729	human	ensembl	74_37	-1	known	silent	c.138	p.D46	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP3	HGNC	ENSG00000136231				140	0	0	35	24	40.678
HOXA2	0	genome.wustl.edu	37	7	27140534	27140534	+	Silent	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	27140534	27140534	A	C	SNP	HOXA2	ENST00000222718	human	ensembl	74_37	-1	known	silent	c.942	p.P314	0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA2	HGNC	ENSG00000105996				134	1	0.740741	57	28	32.9412
HOXA7	0	genome.wustl.edu	37	7	27195865	27195865	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	27195865	27195865	G	T	SNP	HOXA7	ENST00000242159	human	ensembl	74_37	-1	known	silent	c.300	p.A100	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXA7	HGNC	ENSG00000122592				31	0	0	21	10	32.2581
AQP1	0	genome.wustl.edu	37	7	30963164	30963164	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	30963164	30963164	G	A	SNP	AQP1	ENST00000434909	human	ensembl	74_37	+1	known	missense	c.910	p.V304M	1.000	superfamily_Aquaporin-like	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_1,tigrfam_MIP	-	no_errors	AQP1	HGNC	ENSG00000240583				76	0	0	26	10	27.7778
PDE1C	0	genome.wustl.edu	37	7	32110114	32110114	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	32110114	32110114	C	T	SNP	PDE1C	ENST00000495221	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	PDE1C	HGNC	ENSG00000154678				20	0	0	10	8	44.4444
SDK1	0	genome.wustl.edu	37	7	3678636	3678636	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	3678636	3678636	G	A	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	silent	c.459	p.K153	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				19	0	0	10	11	52.381
SDK1	0	genome.wustl.edu	37	7	3678637	3678637	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	3678637	3678637	T	C	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.460	p.Y154H	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				20	0	0	19	3	13.6364
SDK1	0	genome.wustl.edu	37	7	3681641	3681641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	3681641	3681641	G	A	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.617	p.R206H	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				73	0	0	53	5	8.62069
EPDR1	0	genome.wustl.edu	37	7	37960770	37960770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	37960770	37960770	C	T	SNP	EPDR1	ENST00000559325	human	ensembl	74_37	+1	known	missense	c.589	p.R197W	1.000	smart_Ependymin	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289				61	0	0	33	9	21.4286
FAM183B	0	genome.wustl.edu	37	7	38725534	38725534	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	38725534	38725534	G	A	SNP	FAM183B	ENST00000409072	human	ensembl	74_37	-1	novel	silent	c.72	p.Y24	0.862	NULL	NULL	-	no_errors	FAM183B	HGNC	ENSG00000164556				109	0	0	45	24	34.7826
VPS41	0	genome.wustl.edu	37	7	38794339	38794339	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	38794339	38794339	A	C	SNP	VPS41	ENST00000310301	human	ensembl	74_37	-1	known	missense	c.1751	p.V584G	1.000	pfam_Clathrin_H-chain/VPS_repeat,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715				51	0	0	18	9	33.3333
SDK1	0	genome.wustl.edu	37	7	4056808	4056808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	4056808	4056808	G	A	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.2426	p.R809H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				48	0	0	17	11	39.2857
SDK1	0	genome.wustl.edu	37	7	4249683	4249683	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	4249683	4249683	T	G	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.5428	p.F1810V	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				151	0	0	60	23	27.7108
ZMIZ2	0	genome.wustl.edu	37	7	44805082	44805082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	44805082	44805082	G	A	SNP	ZMIZ2	ENST00000309315	human	ensembl	74_37	+1	known	missense	c.2146	p.V716M	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515				61	0	0	18	5	21.7391
POM121L12	0	genome.wustl.edu	37	7	53103659	53103659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	53103659	53103659	C	T	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	missense	c.295	p.R99C	0.000	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900				65	0	0	15	14	48.2759
ACTB	0	genome.wustl.edu	37	7	5568648	5568648	+	Splice_Site	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	5568648	5568648	A	G	SNP	ACTB	ENST00000425660	human	ensembl	74_37	-1	known	splice_site	c.378+2	e3+2	1.000	-	-	-	no_errors	ACTB	HGNC	ENSG00000075624				40	0	0	13	5	27.7778
PMS2	0	genome.wustl.edu	37	7	6029582	6029582	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	6029582	6029582	G	A	SNP	PMS2	ENST00000265849	human	ensembl	74_37	-1	known	silent	c.993	p.C331	1.000	pfam_DNA_mismatch_repair_C,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512				63	0	0	19	18	48.6486
ZNF92	0	genome.wustl.edu	37	7	64864403	64864403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	64864403	64864403	G	A	SNP	ZNF92	ENST00000328747	human	ensembl	74_37	+1	known	missense	c.1376	p.G459D	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF92	HGNC	ENSG00000146757				78	0	0	37	17	31.4815
CCT6P1	0	genome.wustl.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	65222986	65222986	G	T	SNP	CCT6P1	ENST00000442266	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	CCT6P1	HGNC	ENSG00000228409				28	0	0	16	4	20
AUTS2	0	genome.wustl.edu	37	7	69064751	69064751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	69064751	69064751	G	A	SNP	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	missense	c.112	p.G38S	0.913	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321				12	0	0	2	3	60
WBSCR17	0	genome.wustl.edu	37	7	70800611	70800611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	70800611	70800611	C	T	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.314	p.P105L	0.999	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				77	0	0	43	18	29.5082
WBSCR22	0	genome.wustl.edu	37	7	73106939	73106939	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	73106939	73106939	G	A	SNP	WBSCR22	ENST00000265758	human	ensembl	74_37	+1	known	missense	c.473	p.R158Q	1.000	NULL	pfam_Unchr_MeTrfase_Williams-Beuren,pfam_Methyltransf_11	-	no_errors	WBSCR22	HGNC	ENSG00000071462				103	1	0.961538	24	18	42.8571
EIF4H	0	genome.wustl.edu	37	7	73609551	73609551	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	73609551	73609551	G	A	SNP	EIF4H	ENST00000265753	human	ensembl	74_37	+1	known	silent	c.660	p.T220	0.007	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	EIF4H	HGNC	ENSG00000106682				118	0	0	41	16	28.0702
GTF2IRD2	0	genome.wustl.edu	37	7	74212122	74212122	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	74212122	74212122	A	G	SNP	GTF2IRD2	ENST00000405086	human	ensembl	74_37	-1	known	missense	c.1729	p.S577P	0.954	superfamily_RNaseH-like_dom	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2	HGNC	ENSG00000196275				47	0	0	31	16	34.0426
ENSG00000234718	0	genome.wustl.edu	37	7	7782180	7782180	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	7782180	7782180	G	A	SNP	ENSG00000234718	ENST00000418534	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC007161.5	Clone_based_vega_gene	ENSG00000234718				125	0	0	68	7	9.33333
HEATR2	0	genome.wustl.edu	37	7	801507	801507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	801507	801507	G	A	SNP	HEATR2	ENST00000297440	human	ensembl	74_37	+1	known	missense	c.1588	p.A530T	0.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR2	HGNC	ENSG00000164818				18	0	0	3	2	40
SEMA3D	0	genome.wustl.edu	37	7	84642151	84642151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	84642151	84642151	C	T	SNP	SEMA3D	ENST00000284136	human	ensembl	74_37	-1	known	missense	c.1715	p.R572H	1.000	superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Semap_dom,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3D	HGNC	ENSG00000153993				111	0	0	41	30	42.2535
GRM3	0	genome.wustl.edu	37	7	86394652	86394652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	86394652	86394652	G	A	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	missense	c.191	p.R64Q	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				171	0	0	99	66	40
GRM3	0	genome.wustl.edu	37	7	86479839	86479839	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	86479839	86479839	A	G	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	missense	c.2545	p.T849A	1.000	prints_GPCR_3_mtglu_rcpt_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				114	0	0	55	40	42.1053
ABCB1	0	genome.wustl.edu	37	7	87148696	87148696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	87148696	87148696	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	missense	c.2873	p.R958Q	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				104	0	0	47	22	31.8841
ABCB1	0	genome.wustl.edu	37	7	87165820	87165820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	87165820	87165820	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	missense	c.2435	p.G812E	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				108	0	0	34	19	35.8491
SUN1	0	genome.wustl.edu	37	7	905639	905639	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	905639	905639	G	A	SNP	SUN1	ENST00000456758	human	ensembl	74_37	+1	known	missense	c.2482	p.A828T	0.999	NULL	pfam_SUN1,pfam_Sad1_UNC_C	-	no_errors	SUN1	HGNC	ENSG00000164828				127	0	0	49	5	9.25926
GET4	0	genome.wustl.edu	37	7	933435	933435	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	933435	933435	G	T	SNP	GET4	ENST00000265857	human	ensembl	74_37	+1	known	missense	c.805	p.D269Y	1.000	pfam_UPF0363	pfam_UPF0363	-	no_errors	GET4	HGNC	ENSG00000239857				67	0	0	18	6	25
DLX6	0	genome.wustl.edu	37	7	96639203	96639203	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	96639203	96639203	G	A	SNP	DLX6	ENST00000518156	human	ensembl	74_37	+1	known	silent	c.726	p.A242	0.800	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX6	HGNC	ENSG00000006377				87	0	0	39	21	35
DLX5	0	genome.wustl.edu	37	7	96654080	96654080	+	RNA	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	96654080	96654080	C	A	SNP	DLX5	ENST00000493764	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.820	-	-	-	no_errors	DLX5	HGNC	ENSG00000105880				12	0	0	5	7	58.3333
NPTX2	0	genome.wustl.edu	37	7	98254285	98254285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	98254285	98254285	G	A	SNP	NPTX2	ENST00000265634	human	ensembl	74_37	+1	known	missense	c.695	p.R232H	1.000	superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX2	HGNC	ENSG00000106236				429	0	0	153	80	34.3348
TRRAP	0	genome.wustl.edu	37	7	98574685	98574685	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	98574685	98574685	G	A	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.8350	p.G2784R	1.000	pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				161	0	0	78	9	10.3448
ZNF789	0	genome.wustl.edu	37	7	99084582	99084582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	99084582	99084582	G	A	SNP	ZNF789	ENST00000331410	human	ensembl	74_37	+1	known	missense	c.749	p.C250Y	0.112	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF789	HGNC	ENSG00000198556				204	0	0	98	44	30.9859
ZNF394	0	genome.wustl.edu	37	7	99092122	99092122	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	99092122	99092122	T	C	SNP	ZNF394	ENST00000337673	human	ensembl	74_37	-1	known	missense	c.716	p.H239R	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF394	HGNC	ENSG00000160908				197	0	0	74	38	33.9286
GAL3ST4	0	genome.wustl.edu	37	7	99764249	99764249	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	99764249	99764249	C	T	SNP	GAL3ST4	ENST00000360039	human	ensembl	74_37	-1	known	missense	c.305	p.R102H	0.996	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST4	HGNC	ENSG00000197093				252	0	0	111	25	18.3824
RGS22	0	genome.wustl.edu	37	8	101084439	101084439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	101084439	101084439	C	T	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	missense	c.359	p.G120D	0.997	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				76	0	0	75	20	21.0526
DCSTAMP	0	genome.wustl.edu	37	8	105361304	105361304	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	105361304	105361304	T	C	SNP	DCSTAMP	ENST00000297581	human	ensembl	74_37	+1	known	missense	c.524	p.L175P	0.970	NULL	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	-	no_errors	DCSTAMP	HGNC	ENSG00000164935				220	0	0	112	100	47.1698
PKHD1L1	0	genome.wustl.edu	37	8	110499026	110499026	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	110499026	110499026	A	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.9856	p.T3286A	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				300	0	0	206	61	22.8464
TRPS1	0	genome.wustl.edu	37	8	116426822	116426822	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	116426822	116426822	T	C	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.3314	p.Y1105C	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				129	0	0	108	24	18.1818
TAF2	0	genome.wustl.edu	37	8	120800681	120800681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	120800681	120800681	G	A	SNP	TAF2	ENST00000378164	human	ensembl	74_37	-1	known	missense	c.1690	p.L564F	1.000	NULL	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313				121	0	0	94	35	27.1318
WDYHV1	0	genome.wustl.edu	37	8	124449570	124449570	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	124449570	124449570	T	C	SNP	WDYHV1	ENST00000287387	human	ensembl	74_37	+1	known	silent	c.504	p.T168	0.996	pfam_Prot_N_Gln_amidohydro_ab_roll	pfam_Prot_N_Gln_amidohydro_ab_roll	-	no_errors	WDYHV1	HGNC	ENSG00000156795				76	0	0	41	13	24.0741
FER1L6	0	genome.wustl.edu	37	8	124989707	124989707	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	124989707	124989707	G	T	SNP	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	missense	c.921	p.Q307H	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				171	0	0	143	31	17.8161
FER1L6-AS2	0	genome.wustl.edu	37	8	125072642	125072642	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	125072642	125072642	T	C	SNP	FER1L6-AS2	ENST00000520031	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FER1L6-AS2	HGNC	ENSG00000253868				15	0	0	25	4	13.7931
MTSS1	0	genome.wustl.edu	37	8	125565673	125565673	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	125565673	125565673	G	T	SNP	MTSS1	ENST00000518547	human	ensembl	74_37	-1	known	missense	c.1828	p.P610T	1.000	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873				93	0	0	55	15	21.4286
KCNQ3	0	genome.wustl.edu	37	8	133152330	133152330	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	133152330	133152330	C	A	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	missense	c.1561	p.A521S	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156				137	1	0.724638	66	23	25.8427
SLC45A4	0	genome.wustl.edu	37	8	142225974	142225974	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	142225974	142225974	C	T	SNP	SLC45A4	ENST00000517878	human	ensembl	74_37	-1	known	missense	c.1825	p.A609T	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567				100	0	0	48	9	15.7895
ARC	0	genome.wustl.edu	37	8	143695260	143695260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	143695260	143695260	G	A	SNP	ARC	ENST00000356613	human	ensembl	74_37	-1	known	missense	c.373	p.R125C	0.742	prints_Activity-reg_cytoskelet-assoc	prints_Activity-reg_cytoskelet-assoc	-	no_errors	ARC	HGNC	ENSG00000198576				14	0	0	6	8	57.1429
EPPK1	0	genome.wustl.edu	37	8	144943163	144943163	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	144943163	144943163	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	missense	c.4259	p.R1420H	0.009	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				89	0	0	63	6	8.69565
PLEC	0	genome.wustl.edu	37	8	145004449	145004449	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	145004449	145004449	A	G	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.2886	p.G962	0.942	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				26	0	0	7	4	36.3636
ENSG00000204791	0	genome.wustl.edu	37	8	145106130	145106130	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	145106130	145106130	G	A	SNP	ENSG00000204791	ENST00000528912	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-3065J16.6	Clone_based_vega_gene	ENSG00000204791				31	0	0	10	9	47.3684
CPSF1	0	genome.wustl.edu	37	8	145624857	145624857	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	145624857	145624857	T	C	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.1279	p.T427A	0.002	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				38	0	0	24	7	22.5806
SLC39A4	0	genome.wustl.edu	37	8	145640211	145640211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	145640211	145640211	C	T	SNP	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	missense	c.874	p.A292T	0.984	NULL	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804				165	0	0	102	21	17.0732
PPP1R16A	0	genome.wustl.edu	37	8	145722764	145722764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	145722764	145722764	C	T	SNP	PPP1R16A	ENST00000292539	human	ensembl	74_37	+1	known	missense	c.187	p.L63F	0.014	pirsf_Pase-1_reg_su_16AB_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PPP1R16A	HGNC	ENSG00000160972				75	0	0	32	17	34.6939
LRRC14	0	genome.wustl.edu	37	8	145745257	145745257	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	145745257	145745257	T	C	SNP	LRRC14	ENST00000292524	human	ensembl	74_37	+1	known	silent	c.148	p.L50	0.997	NULL	NULL	-	no_errors	LRRC14	HGNC	ENSG00000160959				176	0	0	97	7	6.73077
FGF20	0	genome.wustl.edu	37	8	16850775	16850775	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	16850775	16850775	A	G	SNP	FGF20	ENST00000180166	human	ensembl	74_37	-1	known	missense	c.442	p.Y148H	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF20	HGNC	ENSG00000078579				255	0	0	173	27	13.5
MTUS1	0	genome.wustl.edu	37	8	17542011	17542011	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	17542011	17542011	G	A	SNP	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	silent	c.2664	p.I888	1.000	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422				455	1	0.219298	220	87	28.3388
MTUS1	0	genome.wustl.edu	37	8	17611350	17611350	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	17611350	17611350	A	G	SNP	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	missense	c.1967	p.V656A	0.000	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422				133	0	0	127	40	23.9521
PCM1	0	genome.wustl.edu	37	8	17830005	17830005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	17830005	17830005	G	A	SNP	PCM1	ENST00000325083	human	ensembl	74_37	+1	known	missense	c.3752	p.R1251H	0.996	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674				179	0	0	104	27	20.6107
CSGALNACT1	0	genome.wustl.edu	37	8	19363078	19363078	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	19363078	19363078	T	C	SNP	CSGALNACT1	ENST00000311540	human	ensembl	74_37	-1	known	missense	c.268	p.S90G	1.000	NULL	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				64	0	0	54	19	26.0274
MYOM2	0	genome.wustl.edu	37	8	2005503	2005503	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	2005503	2005503	C	A	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	silent	c.301	p.R101	0.986	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				44	0	0	23	9	28.125
XPO7	0	genome.wustl.edu	37	8	21859729	21859729	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	21859729	21859729	G	T	SNP	XPO7	ENST00000434536	human	ensembl	74_37	+1	known	missense	c.2916	p.Q972H	1.000	NULL	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227				49	0	0	26	9	25.7143
PHYHIP	0	genome.wustl.edu	37	8	22085854	22085854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	22085854	22085854	G	A	SNP	PHYHIP	ENST00000454243	human	ensembl	74_37	-1	known	missense	c.17	p.T6M	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIP	HGNC	ENSG00000168490				19	0	0	12	3	20
PPP3CC	0	genome.wustl.edu	37	8	22332491	22332491	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	22332491	22332491	G	A	SNP	PPP3CC	ENST00000240139	human	ensembl	74_37	+1	known	missense	c.74	p.R25Q	1.000	NULL	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CC	HGNC	ENSG00000120910				92	0	0	76	22	22.449
CCAR2	0	genome.wustl.edu	37	8	22476529	22476529	+	Splice_Site	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	22476529	22476529	G	A	SNP	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	splice_site	c.2521+1	e18+1	1.000	-	-	-	no_errors	CCAR2	HGNC	ENSG00000158941				170	0	0	86	19	18.0952
EGR3	0	genome.wustl.edu	37	8	22550321	22550321	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	22550321	22550321	T	C	SNP	EGR3	ENST00000317216	human	ensembl	74_37	-1	known	missense	c.137	p.Y46C	1.000	NULL	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR3	HGNC	ENSG00000179388				88	0	0	57	26	31.3253
ADAM7	0	genome.wustl.edu	37	8	24333965	24333965	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	24333965	24333965	C	A	SNP	ADAM7	ENST00000175238	human	ensembl	74_37	+1	known	missense	c.653	p.P218H	0.255	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206				108	0	0	67	24	26.3736
NEFL	0	genome.wustl.edu	37	8	24811204	24811204	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	24811204	24811204	G	A	SNP	NEFL	ENST00000221169	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725				154	0	0	64	18	21.9512
DOCK5	0	genome.wustl.edu	37	8	25158099	25158099	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	25158099	25158099	T	C	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	missense	c.772	p.Y258H	1.000	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				32	0	0	26	9	25.7143
EXTL3	0	genome.wustl.edu	37	8	28575186	28575186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	28575186	28575186	G	A	SNP	EXTL3	ENST00000220562	human	ensembl	74_37	+1	known	missense	c.1610	p.R537H	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232				147	0	0	61	24	28.2353
CSMD1	0	genome.wustl.edu	37	8	2944619	2944619	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	2944619	2944619	C	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.7477	p.A2493S	1.000	pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				57	0	0	32	6	15.7895
RBPMS	0	genome.wustl.edu	37	8	30402081	30402081	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	30402081	30402081	G	A	SNP	RBPMS	ENST00000339877	human	ensembl	74_37	+1	known	silent	c.468	p.A156	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBPMS	HGNC	ENSG00000157110				243	1	0.409836	131	37	22.0238
NRG1	0	genome.wustl.edu	37	8	32463104	32463104	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	32463104	32463104	A	G	SNP	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	silent	c.303	p.K101	0.992	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				206	0	0	148	34	18.6813
NRG1	0	genome.wustl.edu	37	8	32613931	32613931	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	32613931	32613931	A	G	SNP	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	missense	c.838	p.K280E	1.000	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				235	0	0	113	40	26.1438
CSMD1	0	genome.wustl.edu	37	8	3263588	3263588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	3263588	3263588	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.2230	p.G744R	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				80	0	0	48	27	36
KCNU1	0	genome.wustl.edu	37	8	36694371	36694371	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	36694371	36694371	G	C	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	missense	c.1426	p.A476P	1.000	pfam_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				187	0	0	115	41	26.2821
ERLIN2	0	genome.wustl.edu	37	8	37609162	37609162	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	37609162	37609162	A	G	SNP	ERLIN2	ENST00000276461	human	ensembl	74_37	+1	known	missense	c.668	p.Q223R	1.000	NULL	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN2	HGNC	ENSG00000147475				86	0	0	45	10	18.1818
GPR124	0	genome.wustl.edu	37	8	37672412	37672412	+	Splice_Site	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	37672412	37672412	A	G	SNP	GPR124	ENST00000412232	human	ensembl	74_37	+1	known	splice_site	c.267-2	e2-2	1.000	-	-	-	no_errors	GPR124	HGNC	ENSG00000020181				160	1	0.621118	71	20	21.978
RAB11FIP1	0	genome.wustl.edu	37	8	37730469	37730469	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	37730469	37730469	G	A	SNP	RAB11FIP1	ENST00000330843	human	ensembl	74_37	-1	known	silent	c.1851	p.L617	0.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				166	0	0	108	39	26.5306
ADRB3	0	genome.wustl.edu	37	8	37823533	37823533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	37823533	37823533	C	T	SNP	ADRB3	ENST00000345060	human	ensembl	74_37	-1	known	missense	c.455	p.R152H	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADR_fam	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB3_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_5HT6_rcpt	-	no_errors	ADRB3	HGNC	ENSG00000188778				10	0	0	9	4	30.7692
FGFR1	0	genome.wustl.edu	37	8	38282121	38282121	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	38282121	38282121	C	T	SNP	FGFR1	ENST00000425967	human	ensembl	74_37	-1	known	missense	c.935	p.S312N	1.000	pirsf_FGF_rcpt_fam,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782				250	0	0	118	37	23.871
TACC1	0	genome.wustl.edu	37	8	38677178	38677178	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	38677178	38677178	C	A	SNP	TACC1	ENST00000379931	human	ensembl	74_37	+1	known	missense	c.416	p.P139H	0.004	NULL	pfam_TACC	-	no_errors	TACC1	HGNC	ENSG00000147526				148	0	0	93	36	27.907
ADAM9	0	genome.wustl.edu	37	8	38913110	38913110	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	38913110	38913110	T	C	SNP	ADAM9	ENST00000487273	human	ensembl	74_37	+1	known	silent	c.1410	p.G470	0.902	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM9	HGNC	ENSG00000168615				183	1	0.543478	127	36	22.0859
ST18	0	genome.wustl.edu	37	8	53025828	53025828	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	53025828	53025828	C	A	SNP	ST18	ENST00000276480	human	ensembl	74_37	-1	known	missense	c.3074	p.R1025L	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488				118	1	0.840336	88	18	16.9811
NPBWR1	0	genome.wustl.edu	37	8	53852546	53852546	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	53852546	53852546	T	C	SNP	NPBWR1	ENST00000331251	human	ensembl	74_37	+1	known	missense	c.79	p.S27P	0.516	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729				32	0	0	27	4	12.9032
TGS1	0	genome.wustl.edu	37	8	56725669	56725669	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	56725669	56725669	A	G	SNP	TGS1	ENST00000260129	human	ensembl	74_37	+1	known	missense	c.2431	p.I811V	0.990	pfam_RNA_cap_Gua-N2-MeTrfase	pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574				56	0	0	34	14	29.1667
MOS	0	genome.wustl.edu	37	8	57026167	57026167	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	57026167	57026167	C	T	SNP	MOS	ENST00000311923	human	ensembl	74_37	-1	known	silent	c.375	p.T125	0.306	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOS	HGNC	ENSG00000172680				194	0	0	123	43	25.9036
MOS	0	genome.wustl.edu	37	8	57026186	57026186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	57026186	57026186	C	T	SNP	MOS	ENST00000311923	human	ensembl	74_37	-1	known	missense	c.356	p.R119H	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOS	HGNC	ENSG00000172680				207	0	0	135	48	26.2295
CHCHD7	0	genome.wustl.edu	37	8	57128951	57128951	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	57128951	57128951	C	A	SNP	CHCHD7	ENST00000523532	human	ensembl	74_37	+1	known	missense	c.85	p.L29M	0.000	NULL	NULL	-	no_errors	CHCHD7	HGNC	ENSG00000170791				49	0	0	45	14	23.7288
FAM110B	0	genome.wustl.edu	37	8	59059360	59059360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	59059360	59059360	G	A	SNP	FAM110B	ENST00000361488	human	ensembl	74_37	+1	known	missense	c.571	p.E191K	0.996	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122				107	0	0	54	16	22.8571
CYP7A1	0	genome.wustl.edu	37	8	59409279	59409279	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	59409279	59409279	A	G	SNP	CYP7A1	ENST00000301645	human	ensembl	74_37	-1	known	silent	c.792	p.N264	0.991	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP7A1	HGNC	ENSG00000167910				305	0	0	174	64	26.8908
ERICH1	0	genome.wustl.edu	37	8	623502	623502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	623502	623502	G	A	SNP	ERICH1	ENST00000262109	human	ensembl	74_37	-1	known	missense	c.850	p.R284W	0.005	NULL	NULL	-	no_errors	ERICH1	HGNC	ENSG00000104714				269	0	0	188	64	25.3968
ERICH1	0	genome.wustl.edu	37	8	642608	642608	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	642608	642608	A	G	SNP	ERICH1	ENST00000262109	human	ensembl	74_37	-1	known	silent	c.174	p.T58	0.000	NULL	NULL	-	no_errors	ERICH1	HGNC	ENSG00000104714				76	0	0	34	20	37.037
SGK223	0	genome.wustl.edu	37	8	8234511	8234511	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	8234511	8234511	C	T	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	missense	c.1408	p.A470T	0.836	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				62	0	0	47	8	14.5455
ENSG00000253374	0	genome.wustl.edu	37	8	82434010	82434010	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	82434010	82434010	C	T	SNP	ENSG00000253374	ENST00000518637	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-257P3.3	Clone_based_vega_gene	ENSG00000253374				76	0	0	65	28	30.1075
CA2	0	genome.wustl.edu	37	8	86377546	86377546	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	86377546	86377546	G	A	SNP	CA2	ENST00000285379	human	ensembl	74_37	+1	known	missense	c.80	p.R27H	0.681	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA2	HGNC	ENSG00000104267				122	0	0	98	20	16.9492
MFHAS1	0	genome.wustl.edu	37	8	8748510	8748510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	8748510	8748510	C	T	SNP	MFHAS1	ENST00000276282	human	ensembl	74_37	-1	known	missense	c.2059	p.A687T	0.994	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	MFHAS1	HGNC	ENSG00000147324				54	0	0	33	4	10.8108
FAM92A1	0	genome.wustl.edu	37	8	94713595	94713595	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	94713595	94713595	C	T	SNP	FAM92A1	ENST00000518322	human	ensembl	74_37	+1	known	missense	c.170	p.A57V	0.512	pfam_FAM92	pfam_FAM92	-	no_errors	FAM92A1	HGNC	ENSG00000188343				73	0	0	29	8	21.6216
RBM12B	0	genome.wustl.edu	37	8	94747361	94747361	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	94747361	94747361	A	G	SNP	RBM12B	ENST00000399300	human	ensembl	74_37	-1	known	silent	c.1278	p.A426	0.032	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808				279	0	0	214	89	29.3729
INTS8	0	genome.wustl.edu	37	8	95877854	95877854	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	95877854	95877854	C	T	SNP	INTS8	ENST00000523731	human	ensembl	74_37	+1	known	nonsense	c.2197	p.R733*	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941				274	1	0.363636	193	75	27.9851
ENSG00000272509	0	genome.wustl.edu	37	8	95897143	95897143	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	95897143	95897143	C	T	SNP	ENSG00000272509	ENST00000605911	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-347C18.5	Clone_based_vega_gene	ENSG00000272509				11	0	0	7	4	36.3636
TSPYL5	0	genome.wustl.edu	37	8	98290023	98290023	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	98290023	98290023	C	T	SNP	TSPYL5	ENST00000322128	human	ensembl	74_37	-1	known	missense	c.50	p.G17D	1.000	NULL	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543				33	0	0	15	3	16.6667
POP1	0	genome.wustl.edu	37	8	99146847	99146847	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	99146847	99146847	G	A	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	missense	c.971	p.S324N	0.026	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				144	0	0	118	13	9.92366
POP1	0	genome.wustl.edu	37	8	99158813	99158813	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	99158813	99158813	C	T	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	nonsense	c.1612	p.Q538*	1.000	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				190	0	0	121	46	27.5449
STK3	0	genome.wustl.edu	37	8	99761554	99761554	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	99761554	99761554	A	G	SNP	STK3	ENST00000419617	human	ensembl	74_37	-1	known	missense	c.301	p.Y101H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Mst1_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SARAH_dom,pfscan_Prot_kinase_dom	-	no_errors	STK3	HGNC	ENSG00000104375				162	0	0	105	33	23.913
GRIN3A	0	genome.wustl.edu	37	9	104449268	104449268	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	104449268	104449268	T	C	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	missense	c.914	p.Q305R	0.926	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				134	0	0	57	35	38.0435
ZNF462	0	genome.wustl.edu	37	9	109689899	109689899	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	109689899	109689899	C	A	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.3706	p.L1236I	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				467	0	0	205	96	31.8937
PTBP3	0	genome.wustl.edu	37	9	114986256	114986256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	114986256	114986256	G	A	SNP	PTBP3	ENST00000458258	human	ensembl	74_37	-1	known	missense	c.1552	p.R518C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	PTBP3	HGNC	ENSG00000119314				122	0	0	86	30	25.8621
SLC46A2	0	genome.wustl.edu	37	9	115652551	115652551	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	115652551	115652551	G	A	SNP	SLC46A2	ENST00000374228	human	ensembl	74_37	-1	known	silent	c.411	p.Y137	0.730	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	SLC46A2	HGNC	ENSG00000119457				87	0	0	42	19	31.1475
WDR31	0	genome.wustl.edu	37	9	116079053	116079053	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	116079053	116079053	T	G	SNP	WDR31	ENST00000374193	human	ensembl	74_37	-1	known	missense	c.1080	p.E360D	0.120	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR31	HGNC	ENSG00000148225				173	0	0	89	5	5.31915
COL27A1	0	genome.wustl.edu	37	9	116999992	116999992	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	116999992	116999992	C	A	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	silent	c.2724	p.P908	0.906	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				84	0	0	33	6	15.3846
AKNA	0	genome.wustl.edu	37	9	117124104	117124104	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	117124104	117124104	C	T	SNP	AKNA	ENST00000307564	human	ensembl	74_37	-1	known	silent	c.2004	p.P668	0.000	pfam_TF_AT-hook	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948				194	0	0	63	33	34.375
ASTN2	0	genome.wustl.edu	37	9	119188283	119188283	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	119188283	119188283	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	silent	c.3867	p.R1289	0.013	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				72	0	0	24	8	25
NEK6	0	genome.wustl.edu	37	9	127074912	127074912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	127074912	127074912	C	T	SNP	NEK6	ENST00000373600	human	ensembl	74_37	+1	known	missense	c.317	p.A106V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK6	HGNC	ENSG00000119408				54	0	0	23	4	14.8148
SLC2A8	0	genome.wustl.edu	37	9	130167812	130167812	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	130167812	130167812	T	A	SNP	SLC2A8	ENST00000373371	human	ensembl	74_37	+1	known	missense	c.1264	p.F422I	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A8	HGNC	ENSG00000136856				69	0	0	35	4	10.2564
C9orf117	0	genome.wustl.edu	37	9	130469311	130469311	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	130469311	130469311	A	G	SNP	C9orf117	ENST00000373295	human	ensembl	74_37	+1	known	missense	c.1	p.M1V	1.000	NULL	NULL	-	no_errors	C9orf117	HGNC	ENSG00000160401				247	0	0	90	25	21.7391
LCN2	0	genome.wustl.edu	37	9	130913980	130913980	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	130913980	130913980	G	A	SNP	LCN2	ENST00000372998	human	ensembl	74_37	+1	known	silent	c.345	p.T115	0.002	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_N_gelatinase	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_N_gelatinase,prints_PstgldnD_synth,prints_Lipocalin,prints_A1-microglobln	-	no_errors	LCN2	HGNC	ENSG00000148346				99	0	0	37	18	32.7273
COQ4	0	genome.wustl.edu	37	9	131095136	131095136	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	131095136	131095136	C	T	SNP	COQ4	ENST00000300452	human	ensembl	74_37	+1	known	silent	c.540	p.I180	0.983	pfam_Coq4	pfam_Coq4	-	no_errors	COQ4	HGNC	ENSG00000167113				180	0	0	58	24	29.2683
C9orf114	0	genome.wustl.edu	37	9	131586433	131586433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	131586433	131586433	G	A	SNP	C9orf114	ENST00000361256	human	ensembl	74_37	-1	known	missense	c.832	p.P278S	1.000	pfam_Put_MeTrfase	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold	-	no_errors	C9orf114	HGNC	ENSG00000198917				62	0	0	9	4	30.7692
DOLK	0	genome.wustl.edu	37	9	131708573	131708573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	131708573	131708573	C	T	SNP	DOLK	ENST00000372586	human	ensembl	74_37	-1	known	missense	c.1010	p.R337Q	1.000	NULL	NULL	-	no_errors	DOLK	HGNC	ENSG00000175283				483	0	0	138	79	36.4055
NUP214	0	genome.wustl.edu	37	9	134022878	134022878	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	134022878	134022878	A	G	SNP	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	silent	c.1950	p.G650	0.136	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				279	0	0	75	38	33.6283
ENSG00000212395	0	genome.wustl.edu	37	9	134658291	134658291	+	RNA	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	134658291	134658291	T	C	SNP	ENSG00000212395	ENST00000391093	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.019	-	-	-	no_errors	SNORA67	RFAM	ENSG00000212395				25	0	0	11	6	35.2941
DDX31	0	genome.wustl.edu	37	9	135522411	135522411	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	135522411	135522411	A	G	SNP	DDX31	ENST00000372159	human	ensembl	74_37	-1	known	silent	c.1317	p.D439	0.876	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485				125	0	0	52	21	28.7671
ADAMTS13	0	genome.wustl.edu	37	9	136320470	136320470	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	136320470	136320470	C	A	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	missense	c.3313	p.Q1105K	0.009	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				208	0	0	86	49	36.2963
BRD3	0	genome.wustl.edu	37	9	136918511	136918511	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	136918511	136918511	C	T	SNP	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	missense	c.89	p.S30N	0.797	superfamily_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				102	0	0	21	13	38.2353
COL5A1	0	genome.wustl.edu	37	9	137644457	137644457	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	137644457	137644457	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.1685	p.G562D	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				68	0	0	17	6	26.087
KCNT1	0	genome.wustl.edu	37	9	138678163	138678163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	138678163	138678163	G	A	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	missense	c.3298	p.A1100T	0.025	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				42	0	0	6	3	33.3333
QSOX2	0	genome.wustl.edu	37	9	139107139	139107139	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	139107139	139107139	T	C	SNP	QSOX2	ENST00000358701	human	ensembl	74_37	-1	known	missense	c.1221	p.I407M	0.997	NULL	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX2	HGNC	ENSG00000165661				96	0	0	30	22	42.3077
DNLZ	0	genome.wustl.edu	37	9	139256601	139256601	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	139256601	139256601	C	T	SNP	DNLZ	ENST00000371738	human	ensembl	74_37	-1	known	missense	c.400	p.E134K	1.000	pfam_Znf_DNL-typ	pfam_Znf_DNL-typ	-	no_errors	DNLZ	HGNC	ENSG00000213221				78	0	0	19	9	32.1429
SEC16A	0	genome.wustl.edu	37	9	139353986	139353986	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	139353986	139353986	G	A	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	missense	c.5213	p.A1738V	1.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				24	0	0	8	3	27.2727
PHPT1	0	genome.wustl.edu	37	9	139743751	139743751	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	139743751	139743751	A	G	SNP	PHPT1	ENST00000492540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	PHPT1	HGNC	ENSG00000054148				18	0	0	12	4	25
LCNL1	0	genome.wustl.edu	37	9	139879360	139879360	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	139879360	139879360	A	T	SNP	LCNL1	ENST00000408973	human	ensembl	74_37	+1	known	missense	c.392	p.H131L	0.000	superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	-	no_errors	LCNL1	HGNC	ENSG00000214402				9	0	0	4	5	55.5556
CACNA1B	0	genome.wustl.edu	37	9	140901268	140901268	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	140901268	140901268	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.2027	p.S676L	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				44	0	0	18	5	21.7391
CACNA1B	0	genome.wustl.edu	37	9	140952659	140952659	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	140952659	140952659	A	C	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.4268	p.Q1423P	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				207	0	0	85	29	25.4386
FREM1	0	genome.wustl.edu	37	9	14819329	14819329	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	14819329	14819329	G	A	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.2452	p.R818W	0.046	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				86	0	0	33	12	26.6667
CBWD1	0	genome.wustl.edu	37	9	164038	164038	+	Splice_Site	SNP	C	C	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	164038	164038	C	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	splice_site	c.431-1	e5-1	1.000	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785				273	0	0	151	12	7.36196
CNTLN	0	genome.wustl.edu	37	9	17394904	17394904	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	17394904	17394904	C	T	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	nonsense	c.2452	p.R818*	0.011	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				159	0	0	54	26	32.5
CAAP1	0	genome.wustl.edu	37	9	26842399	26842399	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	26842399	26842399	A	C	SNP	CAAP1	ENST00000333916	human	ensembl	74_37	-1	known	missense	c.986	p.V329G	1.000	NULL	NULL	-	no_errors	CAAP1	HGNC	ENSG00000120159				113	0	0	79	38	32.4786
TEK	0	genome.wustl.edu	37	9	27212816	27212816	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	27212816	27212816	C	T	SNP	TEK	ENST00000380036	human	ensembl	74_37	+1	known	missense	c.2798	p.A933V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156				76	0	0	40	7	14.8936
DDX58	0	genome.wustl.edu	37	9	32481366	32481366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	32481366	32481366	G	A	SNP	DDX58	ENST00000379883	human	ensembl	74_37	-1	known	missense	c.1610	p.A537V	0.989	superfamily_P-loop_NTPase	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201				98	0	0	45	10	18.1818
NOL6	0	genome.wustl.edu	37	9	33466661	33466661	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	33466661	33466661	T	C	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	missense	c.1997	p.Y666C	0.999	pfam_Nrap	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271				115	0	0	68	4	5.55556
PTENP1	0	genome.wustl.edu	37	9	33675379	33675379	+	RNA	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	33675379	33675379	C	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				26	0	0	37	6	13.9535
PTENP1	0	genome.wustl.edu	37	9	33675400	33675400	+	RNA	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	33675400	33675400	G	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				35	0	0	55	5	8.33333
VCP	0	genome.wustl.edu	37	9	35062113	35062113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	35062113	35062113	C	T	SNP	VCP	ENST00000358901	human	ensembl	74_37	-1	known	missense	c.968	p.R323H	1.000	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_AAA_ATPase_CDC48	pfam_ATPase_AAA_core,pfam_CDC4_N-term_subdom,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Cdc48_dom2,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_Vps4_C,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase,tigrfam_AAA_ATPase_CDC48	-	no_errors	VCP	HGNC	ENSG00000165280				160	0	0	80	27	25.2336
FAM166B	0	genome.wustl.edu	37	9	35563010	35563010	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	35563010	35563010	A	G	SNP	FAM166B	ENST00000447837	human	ensembl	74_37	-1	known	silent	c.354	p.S118	0.015	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166B	HGNC	ENSG00000215187				61	0	0	32	11	25.5814
ZBTB5	0	genome.wustl.edu	37	9	37442081	37442081	+	Silent	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	37442081	37442081	T	C	SNP	ZBTB5	ENST00000307750	human	ensembl	74_37	-1	known	silent	c.468	p.S156	0.657	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795				175	0	0	82	38	31.6667
FRMPD1	0	genome.wustl.edu	37	9	37744566	37744566	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	37744566	37744566	A	G	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	missense	c.2537	p.Y846C	1.000	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				112	0	0	46	19	29.2308
ANKRD18A	0	genome.wustl.edu	37	9	38601196	38601196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	38601196	38601196	G	A	SNP	ANKRD18A	ENST00000399703	human	ensembl	74_37	-1	known	missense	c.868	p.H290Y	0.004	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD18A	HGNC	ENSG00000180071				9	0	0	1	3	75
CNTNAP3B	0	genome.wustl.edu	37	9	43861114	43861114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	43861114	43861114	C	T	SNP	CNTNAP3B	ENST00000377564	human	ensembl	74_37	+1	known	missense	c.1988	p.A663V	0.146	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3B	HGNC	ENSG00000154529				17	0	0	3	2	40
ANKRD20A4	0	genome.wustl.edu	37	9	69420380	69420380	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	69420380	69420380	A	G	SNP	ANKRD20A4	ENST00000357336	human	ensembl	74_37	+1	known	missense	c.1270	p.T424A	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014				218	0	0	99	10	9.17431
PGM5	0	genome.wustl.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	70993145	70993145	A	G	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.292	p.I98V	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				92	0	0	76	9	10.5882
APBA1	0	genome.wustl.edu	37	9	72131901	72131901	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	72131901	72131901	C	T	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	missense	c.226	p.A76T	1.000	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				16	0	0	10	2	16.6667
TRPM3	0	genome.wustl.edu	37	9	73399051	73399051	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	73399051	73399051	G	A	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.1199	p.A400V	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				119	0	0	44	26	37.1429
TMEM2	0	genome.wustl.edu	37	9	74309493	74309493	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	74309493	74309493	A	G	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	missense	c.3628	p.Y1210H	1.000	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				60	0	0	34	7	17.0732
TMC1	0	genome.wustl.edu	37	9	75406888	75406888	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	75406888	75406888	C	T	SNP	TMC1	ENST00000297784	human	ensembl	74_37	+1	known	silent	c.1311	p.I437	0.935	NULL	pfam_TMC	-	no_errors	TMC1	HGNC	ENSG00000165091				259	0	0	208	15	6.72646
TRPM6	0	genome.wustl.edu	37	9	77454951	77454951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	77454951	77454951	C	T	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.533	p.G178D	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				154	1	0.645161	51	39	43.3333
PRUNE2	0	genome.wustl.edu	37	9	79229502	79229502	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	79229502	79229502	A	G	SNP	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	missense	c.8177	p.L2726P	1.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				116	0	0	46	7	13.2075
FOXB2	0	genome.wustl.edu	37	9	79635344	79635344	+	Silent	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	79635344	79635344	G	T	SNP	FOXB2	ENST00000376708	human	ensembl	74_37	+1	known	silent	c.774	p.A258	0.006	prints_Antifreeze_1	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head,prints_Antifreeze_1	-	no_errors	FOXB2	HGNC	ENSG00000204612				50	0	0	13	14	51.8519
FOXB2	0	genome.wustl.edu	37	9	79635350	79635350	+	Silent	SNP	G	G	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	79635350	79635350	G	C	SNP	FOXB2	ENST00000376708	human	ensembl	74_37	+1	known	silent	c.780	p.A260	0.585	prints_Antifreeze_1	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head,prints_Antifreeze_1	-	no_errors	FOXB2	HGNC	ENSG00000204612				56	0	0	15	16	51.6129
SPATA31C1	0	genome.wustl.edu	37	9	90535618	90535618	+	RNA	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	90535618	90535618	T	G	SNP	SPATA31C1	ENST00000602681	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA31C1	HGNC	ENSG00000230246				249	0	0	130	56	30.1075
ROR2	0	genome.wustl.edu	37	9	94487069	94487069	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	94487069	94487069	C	T	SNP	ROR2	ENST00000375708	human	ensembl	74_37	-1	known	silent	c.1707	p.S569	0.245	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR2	HGNC	ENSG00000169071				66	0	0	28	15	34.8837
NOL8	0	genome.wustl.edu	37	9	95077545	95077545	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	95077545	95077545	A	G	SNP	NOL8	ENST00000442668	human	ensembl	74_37	-1	known	silent	c.1362	p.S454	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000				47	0	0	28	16	36.3636
OGN	0	genome.wustl.edu	37	9	95152283	95152283	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	95152283	95152283	A	G	SNP	OGN	ENST00000262551	human	ensembl	74_37	-1	known	silent	c.483	p.G161	0.630	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OGN	HGNC	ENSG00000106809				96	0	0	48	13	21.3115
ZNF484	0	genome.wustl.edu	37	9	95618525	95618525	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	95618525	95618525	T	C	SNP	ZNF484	ENST00000395506	human	ensembl	74_37	-1	known	missense	c.97	p.S33G	0.987	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081				198	0	0	71	42	37.1681
PTPDC1	0	genome.wustl.edu	37	9	96863768	96863768	+	RNA	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	96863768	96863768	A	G	SNP	PTPDC1	ENST00000467049	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTPDC1	HGNC	ENSG00000158079				19	0	0	11	7	38.8889
DMRT3	0	genome.wustl.edu	37	9	990229	990229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	990229	990229	G	A	SNP	DMRT3	ENST00000190165	human	ensembl	74_37	+1	known	missense	c.643	p.E215K	0.972	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT3	HGNC	ENSG00000064218				119	0	0	55	25	31.25
CDC14B	0	genome.wustl.edu	37	9	99272005	99272005	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	99272005	99272005	G	A	SNP	CDC14B	ENST00000375241	human	ensembl	74_37	-1	known	silent	c.1410	p.G470	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14B	HGNC	ENSG00000081377				122	0	0	62	30	32.6087
GPRASP2	0	genome.wustl.edu	37	X	101971716	101971716	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	101971716	101971716	T	C	SNP	GPRASP2	ENST00000332262	human	ensembl	74_37	+1	known	missense	c.1919	p.V640A	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301				44	0	0	20	51	71.831
H2BFWT	0	genome.wustl.edu	37	X	103267750	103267750	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	103267750	103267750	A	G	SNP	H2BFWT	ENST00000217926	human	ensembl	74_37	-1	known	silent	c.483	p.A161	0.098	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	H2BFWT	HGNC	ENSG00000123569				45	0	0	7	17	70.8333
CT47B1	0	genome.wustl.edu	37	X	120009221	120009221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	120009221	120009221	C	T	SNP	CT47B1	ENST00000371311	human	ensembl	74_37	-1	known	missense	c.304	p.E102K	0.000	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446				28	0	0	8	15	65.2174
GLUD2	0	genome.wustl.edu	37	X	120182454	120182454	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	120182454	120182454	G	T	SNP	GLUD2	ENST00000328078	human	ensembl	74_37	+1	known	missense	c.916	p.V306F	0.997	pfam_Glu/Leu/Phe/Val_DH_C,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890				181	0	0	51	95	65.0685
STAG2	0	genome.wustl.edu	37	X	123164875	123164875	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	123164875	123164875	C	A	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	missense	c.188	p.P63H	1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				75	0	0	31	23	42.5926
STAG2	0	genome.wustl.edu	37	X	123185062	123185062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	123185062	123185062	G	A	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	missense	c.1109	p.R370Q	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				33	0	0	8	19	70.3704
DCAF12L1	0	genome.wustl.edu	37	X	125686323	125686323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	125686323	125686323	C	T	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	missense	c.269	p.R90H	0.998	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889				82	0	0	14	25	64.1026
OCRL	0	genome.wustl.edu	37	X	128723914	128723914	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	128723914	128723914	C	T	SNP	OCRL	ENST00000371113	human	ensembl	74_37	+1	known	silent	c.2562	p.S854	0.910	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126				155	0	0	28	64	69.5652
BCORL1	0	genome.wustl.edu	37	X	129185910	129185910	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	129185910	129185910	T	C	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	missense	c.4994	p.M1665T	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				161	0	0	30	69	69.697
CSF2RA	0	genome.wustl.edu	37	X	1428507	1428507	+	RNA	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	1428507	1428507	C	T	SNP	CSF2RA	ENST00000498153	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.031	-	-	-	no_errors	CSF2RA	HGNC	ENSG00000198223				83	0	0	28	23	45.098
CNGA2	0	genome.wustl.edu	37	X	150908125	150908125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	150908125	150908125	C	T	SNP	CNGA2	ENST00000329903	human	ensembl	74_37	+1	known	missense	c.295	p.R99C	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862				64	0	0	15	23	60.5263
PLXNB3	0	genome.wustl.edu	37	X	153043732	153043732	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	153043732	153043732	A	T	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	missense	c.5495	p.K1832I	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				67	0	0	10	16	61.5385
ASB11	0	genome.wustl.edu	37	X	15306176	15306176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	15306176	15306176	C	T	SNP	ASB11	ENST00000480796	human	ensembl	74_37	-1	known	missense	c.674	p.G225D	0.962	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB11	HGNC	ENSG00000165192				73	0	0	14	33	70.2128
AVPR2	0	genome.wustl.edu	37	X	153172147	153172147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	153172147	153172147	G	A	SNP	AVPR2	ENST00000337474	human	ensembl	74_37	+1	known	missense	c.1081	p.A361T	0.986	prints_Vprsn_rcpt_V2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895				54	0	0	12	31	72.093
ATP6AP1	0	genome.wustl.edu	37	X	153663742	153663742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	153663742	153663742	G	A	SNP	ATP6AP1	ENST00000369762	human	ensembl	74_37	+1	known	missense	c.1094	p.S365N	1.000	pfam_BIG/ATPase_V1_suS1	pfam_BIG/ATPase_V1_suS1	-	no_errors	ATP6AP1	HGNC	ENSG00000071553				65	0	0	5	20	80
GDI1	0	genome.wustl.edu	37	X	153670511	153670511	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	153670511	153670511	T	C	SNP	GDI1	ENST00000447750	human	ensembl	74_37	+1	known	missense	c.1045	p.Y349H	1.000	pfam_GDP_dissociation_inhibitor,prints_RabGDI	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI1	HGNC	ENSG00000203879				109	0	0	29	15	34.0909
ASMTL	0	genome.wustl.edu	37	X	1546793	1546793	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	1546793	1546793	C	A	SNP	ASMTL	ENST00000381317	human	ensembl	74_37	-1	known	missense	c.731	p.G244V	0.000	NULL	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093				146	1	0.680272	65	27	29.3478
CDKL5	0	genome.wustl.edu	37	X	18622715	18622715	+	Silent	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	18622715	18622715	A	G	SNP	CDKL5	ENST00000379989	human	ensembl	74_37	+1	known	silent	c.1671	p.S557	0.475	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL5	HGNC	ENSG00000008086				118	0	0	58	34	36.9565
PTCHD1	0	genome.wustl.edu	37	X	23410726	23410726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	23410726	23410726	C	T	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	missense	c.1091	p.T364I	1.000	pfam_Patched,pfscan_SSD	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186				50	0	0	24	25	51.0204
PTCHD1	0	genome.wustl.edu	37	X	23411676	23411676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	23411676	23411676	G	A	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	missense	c.2041	p.V681I	0.995	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186				83	0	0	52	4	7.14286
XG	0	genome.wustl.edu	37	X	2707735	2707735	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	2707735	2707735	G	A	SNP	XG	ENST00000419513	human	ensembl	74_37	+1	known	missense	c.241	p.G81S	0.001	pfam_CD99L2	pfam_CD99L2	-	no_errors	XG	HGNC	ENSG00000124343				11	0	0	5	2	28.5714
PPP2R3B	0	genome.wustl.edu	37	X	306359	306359	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	306359	306359	A	T	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	missense	c.928	p.F310I	0.995	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				255	0	0	63	24	27.5862
BCOR	0	genome.wustl.edu	37	X	39933822	39933822	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	39933822	39933822	C	T	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	silent	c.777	p.S259	0.008	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				31	0	0	2	9	81.8182
MED14	0	genome.wustl.edu	37	X	40547715	40547715	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	40547715	40547715	C	T	SNP	MED14	ENST00000324817	human	ensembl	74_37	-1	known	missense	c.2048	p.R683H	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182				31	0	0	7	19	73.0769
SLC38A5	0	genome.wustl.edu	37	X	48320459	48320459	+	Silent	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	48320459	48320459	G	A	SNP	SLC38A5	ENST00000317669	human	ensembl	74_37	-1	known	silent	c.705	p.L235	0.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A5	HGNC	ENSG00000017483				43	0	0	14	17	54.8387
KCND1	0	genome.wustl.edu	37	X	48826019	48826019	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	48826019	48826019	C	T	SNP	KCND1	ENST00000218176	human	ensembl	74_37	-1	known	silent	c.660	p.E220	0.796	NULL	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057				23	0	0	6	11	64.7059
GPKOW	0	genome.wustl.edu	37	X	48974062	48974062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	48974062	48974062	C	T	SNP	GPKOW	ENST00000156109	human	ensembl	74_37	-1	known	missense	c.669	p.M223I	0.000	NULL	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394				34	0	0	12	14	53.8462
SHROOM4	0	genome.wustl.edu	37	X	50350731	50350731	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	50350731	50350731	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	silent	c.3411	p.E1137	0.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352				19	0	0	1	6	85.7143
MAGED1	0	genome.wustl.edu	37	X	51639798	51639798	+	Silent	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	51639798	51639798	C	A	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	silent	c.1215	p.I405	0.934	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222				69	0	0	23	4	14.8148
AR	0	genome.wustl.edu	37	X	66765883	66765883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	66765883	66765883	G	A	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	missense	c.895	p.A299T	0.001	pfam_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				50	0	0	9	24	72.7273
FAM155B	0	genome.wustl.edu	37	X	68725963	68725963	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	68725963	68725963	C	T	SNP	FAM155B	ENST00000252338	human	ensembl	74_37	+1	known	missense	c.838	p.R280W	1.000	NULL	NULL	-	no_errors	FAM155B	HGNC	ENSG00000130054				14	0	0	2	7	77.7778
HDHD1	0	genome.wustl.edu	37	X	6995384	6995384	+	Silent	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	6995384	6995384	C	T	SNP	HDHD1	ENST00000424830	human	ensembl	74_37	-1	known	silent	c.456	p.E152	0.001	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IA	-	no_errors	HDHD1	HGNC	ENSG00000130021				42	0	0	7	12	63.1579
NLGN3	0	genome.wustl.edu	37	X	70368014	70368014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	70368014	70368014	G	A	SNP	NLGN3	ENST00000358741	human	ensembl	74_37	+1	known	missense	c.415	p.E139K	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338				64	0	0	13	34	72.3404
ERCC6L	0	genome.wustl.edu	37	X	71425719	71425719	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	71425719	71425719	A	T	SNP	ERCC6L	ENST00000334463	human	ensembl	74_37	-1	known	missense	c.2898	p.N966K	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871				92	0	0	33	38	53.5211
STS	0	genome.wustl.edu	37	X	7252076	7252076	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	7252076	7252076	C	T	SNP	STS	ENST00000217961	human	ensembl	74_37	+1	known	missense	c.1306	p.R436C	0.004	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	STS	HGNC	ENSG00000101846				73	0	0	37	11	22.9167
ITM2A	0	genome.wustl.edu	37	X	78622666	78622666	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	78622666	78622666	T	G	SNP	ITM2A	ENST00000373298	human	ensembl	74_37	-1	known	missense	c.47	p.E16A	0.997	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	ITM2A	HGNC	ENSG00000078596				21	0	0	5	2	28.5714
BRWD3	0	genome.wustl.edu	37	X	79962956	79962956	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	79962956	79962956	A	G	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	missense	c.2522	p.V841A	0.998	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				26	0	0	24	3	11.1111
KAL1	0	genome.wustl.edu	37	X	8502392	8502392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	8502392	8502392	C	T	SNP	KAL1	ENST00000262648	human	ensembl	74_37	-1	known	missense	c.1952	p.R651Q	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_WAP-type_4-diS_core	-	no_errors	KAL1	HGNC	ENSG00000011201				34	0	0	10	11	52.381
CPXCR1	0	genome.wustl.edu	37	X	88009023	88009023	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	88009023	88009023	A	T	SNP	CPXCR1	ENST00000276127	human	ensembl	74_37	+1	known	missense	c.608	p.H203L	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	CPXCR1	HGNC	ENSG00000147183				31	0	0	12	20	62.5
PCDH11X	0	genome.wustl.edu	37	X	91873260	91873260	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	91873260	91873260	C	A	SNP	PCDH11X	ENST00000298274	human	ensembl	74_37	+1	known	missense	c.3254	p.T1085K	0.997	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				14	0	0	3	9	75
PCDH19	0	genome.wustl.edu	37	X	99663109	99663109	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	99663109	99663109	C	T	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	missense	c.487	p.V163M	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				79	0	0	15	39	72.2222
USP9Y	0	genome.wustl.edu	37	Y	14898560	14898560	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	Y	14898560	14898560	A	G	SNP	USP9Y	ENST00000338981	human	ensembl	74_37	+1	known	missense	c.3388	p.M1130V	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,superfamily_Glycoside_hydrolase_SF,pfscan_Peptidase_C19/C67	-	no_errors	USP9Y	HGNC	ENSG00000114374				64	0	0	30	10	25
SASS6	0	genome.wustl.edu	37	1	100588802	100588802	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	100588802	100588802	A	-	DEL	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	frame_shift_del	c.170	p.L57fs	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				45	0	0	35	6	14.6341
PRPF38B	0	genome.wustl.edu	37	1	109235175	109235175	+	RNA	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	109235175	109235175	C	-	DEL	PRPF38B	ENST00000467302	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.833	-	-	-	no_errors	PRPF38B	HGNC	ENSG00000134186				8	0	0	8	3	27.2727
CELSR2	0	genome.wustl.edu	37	1	109815971	109815971	+	RNA	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	109815971	109815971	C	-	DEL	CELSR2	ENST00000498157	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CELSR2	HGNC	ENSG00000143126				56	0	0	25	9	26.4706
GSTM4	0	genome.wustl.edu	37	1	110200087	110200088	+	RNA	DEL	TA	TA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	110200087	110200088	TA	-	DEL	GSTM4	ENST00000461767	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GSTM4	HGNC	ENSG00000168765				52	0	0	38	27	41.5385
AP4B1-AS1	0	genome.wustl.edu	37	1	114443731	114443733	+	RNA	DEL	AAT	AAT	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAT	AAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	114443731	114443733	AAT	-	DEL	AP4B1-AS1	ENST00000419536	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004:0.003:0.002	-	-	-	no_errors	AP4B1-AS1	HGNC	ENSG00000226167				17	0	0	19	2	9.52381
B3GALT6	0	genome.wustl.edu	37	1	1168239	1168240	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	1168239	1168240	-	G	INS	B3GALT6	ENST00000379198	human	ensembl	74_37	+1	known	frame_shift_ins	c.581_582	p.R197fs	0.984:0.002	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT6	HGNC	ENSG00000176022				26	0	0	4	3	42.8571
LOC101927345	0	genome.wustl.edu	37	1	143378148	143378148	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	143378148	143378148	A	-	DEL	LOC101927345	ENST00000428624	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261				163	0	0	72	15	17.2414
ARNT	0	genome.wustl.edu	37	1	150789283	150789283	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	150789283	150789283	G	-	DEL	ARNT	ENST00000358595	human	ensembl	74_37	-1	known	frame_shift_del	c.1783	p.R595fs	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT	HGNC	ENSG00000143437				188	0	0	64	18	21.9512
RUSC1-AS1	0	genome.wustl.edu	37	1	155287631	155287631	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	155287631	155287631	A	-	DEL	RUSC1-AS1	ENST00000446880	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RUSC1-AS1	HGNC	ENSG00000225855				13	0	0	9	4	30.7692
ASH1L	0	genome.wustl.edu	37	1	155308000	155308000	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	155308000	155308000	T	-	DEL	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	frame_shift_del	c.8698	p.T2900fs	0.002	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				213	1	0.46729	94	36	27.6923
GON4L	0	genome.wustl.edu	37	1	155823172	155823172	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	155823172	155823172	T	-	DEL	GON4L	ENST00000368331	human	ensembl	74_37	-1	known	frame_shift_del	c.400	p.M134fs	0.269	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580				222	1	0.44843	131	61	31.7708
INSRR	0	genome.wustl.edu	37	1	156821914	156821914	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	156821914	156821914	C	-	DEL	INSRR	ENST00000368195	human	ensembl	74_37	-1	known	frame_shift_del	c.707	p.G236fs	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSRR	HGNC	ENSG00000027644				107	0	0	42	19	31.1475
SPEN	0	genome.wustl.edu	37	1	16255883	16255883	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	16255883	16255883	A	-	DEL	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	frame_shift_del	c.3148	p.I1052fs	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				181	0	0	79	12	13.1868
SPEN	0	genome.wustl.edu	37	1	16258889	16258889	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	16258889	16258889	A	-	DEL	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	frame_shift_del	c.6154	p.N2053fs	0.665	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				142	1	0.699301	57	18	24
PAX7	0	genome.wustl.edu	37	1	18958157	18958157	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	18958157	18958157	C	-	DEL	PAX7	ENST00000375375	human	ensembl	74_37	+1	known	frame_shift_del	c.60	p.R22fs	1.000	NULL	pfam_Paired_dom,pfam_Homeobox_dom,pfam_Pax7,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX7	HGNC	ENSG00000009709				41	0	0	22	5	18.5185
UBR4	0	genome.wustl.edu	37	1	19505634	19505635	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	19505634	19505635	AG	-	DEL	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	frame_shift_del	c.2265_2264	p.S755fs	0.984:1.000	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				230	0	0	89	42	32.0611
DDX59	0	genome.wustl.edu	37	1	200594042	200594042	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	200594042	200594042	T	-	DEL	DDX59	ENST00000447706	human	ensembl	74_37	-1	known	frame_shift_del	c.1730	p.N577fs	0.001	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				52	0	0	51	18	26.087
CAMSAP2	0	genome.wustl.edu	37	1	200827020	200827020	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	200827020	200827020	A	-	DEL	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	frame_shift_del	c.4303	p.M1437fs	1.000	pfam_CKK_domain,superfamily_PRC_barrel-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				176	0	0	80	35	30.4348
ATP2B4	0	genome.wustl.edu	37	1	203667346	203667346	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	203667346	203667346	C	-	DEL	ATP2B4	ENST00000357681	human	ensembl	74_37	+1	known	frame_shift_del	c.255	p.K88fs	0.997	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668				120	0	0	45	23	33.8235
KISS1	0	genome.wustl.edu	37	1	204159760	204159761	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	204159760	204159761	-	G	INS	KISS1	ENST00000367194	human	ensembl	74_37	-1	known	frame_shift_ins	c.269_268	p.H90fs	0.000:0.000	NULL	NULL	-	no_errors	KISS1	HGNC	ENSG00000170498				13	0	0	4	2	33.3333
RASSF5	0	genome.wustl.edu	37	1	206757987	206757987	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	206757987	206757987	T	-	DEL	RASSF5	ENST00000355294	human	ensembl	74_37	+1	known	frame_shift_del	c.959	p.F321fs	0.994	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	RASSF5	HGNC	ENSG00000136653				103	0	0	44	25	36.2319
EIF4G3	0	genome.wustl.edu	37	1	21306905	21306905	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	21306905	21306905	G	-	DEL	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	frame_shift_del	c.268	p.Q90fs	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151				74	0	0	34	9	20.9302
CENPF	0	genome.wustl.edu	37	1	214830653	214830653	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	214830653	214830653	A	-	DEL	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	frame_shift_del	c.8863	p.S2957fs	1.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				74	0	0	43	21	32.8125
USP48	0	genome.wustl.edu	37	1	22084139	22084139	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	22084139	22084139	A	-	DEL	USP48	ENST00000489108	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	USP48	HGNC	ENSG00000090686				68	0	0	31	7	18.4211
ARV1	0	genome.wustl.edu	37	1	231131566	231131567	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	231131566	231131567	-	A	INS	ARV1	ENST00000310256	human	ensembl	74_37	+1	known	frame_shift_ins	c.509_510	p.K174fs	0.000:0.000	pfam_Arv1	pfam_Arv1	-	no_errors	ARV1	HGNC	ENSG00000173409				96	0	0	48	14	22.5806
RYR2	0	genome.wustl.edu	37	1	237969494	237969494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	237969494	237969494	T	-	DEL	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	frame_shift_del	c.14227	p.F4745fs	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				77	0	0	25	16	39.0244
FMN2	0	genome.wustl.edu	37	1	240370840	240370840	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	240370840	240370840	C	-	DEL	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	frame_shift_del	c.2728	p.P911fs	0.895	pfam_Formin_homology_1,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				247	0	0	59	19	24.359
TCEB3	0	genome.wustl.edu	37	1	24078404	24078404	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	24078404	24078404	A	-	DEL	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	frame_shift_del	c.1387	p.N465fs	0.998	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007				329	0	0	69	107	60.7955
COX20	0	genome.wustl.edu	37	1	245006587	245006587	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	245006587	245006587	T	-	DEL	COX20	ENST00000391839	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COX20	HGNC	ENSG00000203667				30	0	0	16	13	44.8276
ZNF496	0	genome.wustl.edu	37	1	247473522	247473522	+	RNA	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	247473522	247473522	C	-	DEL	ZNF496	ENST00000462139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF496	HGNC	ENSG00000162714				12	0	0	10	9	47.3684
OR2T11	0	genome.wustl.edu	37	1	248789732	248789732	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	248789732	248789732	T	-	DEL	OR2T11	ENST00000330803	human	ensembl	74_37	-1	known	frame_shift_del	c.698	p.K233fs	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T11	HGNC	ENSG00000183130				126	0	0	50	18	26.4706
HMGN2	0	genome.wustl.edu	37	1	26800609	26800609	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	26800609	26800609	A	-	DEL	HMGN2	ENST00000361427	human	ensembl	74_37	+1	known	frame_shift_del	c.124	p.K43fs	1.000	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN2	HGNC	ENSG00000198830				85	0	0	27	13	32.5
WDTC1	0	genome.wustl.edu	37	1	27621108	27621108	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	27621108	27621108	G	-	DEL	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	frame_shift_del	c.861	p.E290fs	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				55	0	0	38	5	11.6279
PUM1	0	genome.wustl.edu	37	1	31439015	31439020	+	In_Frame_Del	DEL	GCTGGG	GCTGGG	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GCTGGG	GCTGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	31439015	31439020	GCTGGG	-	DEL	PUM1	ENST00000426105	human	ensembl	74_37	-1	known	in_frame_del	c.1900_1895	p.PQ632in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644				127	0	0	59	30	33.7079
CTPS1	0	genome.wustl.edu	37	1	41462979	41462979	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	41462979	41462979	T	-	DEL	CTPS1	ENST00000486889	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	CTPS1	HGNC	ENSG00000171793				45	0	0	24	18	42.8571
NASP	0	genome.wustl.edu	37	1	46073055	46073055	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	46073055	46073055	A	-	DEL	NASP	ENST00000402363	human	ensembl	74_37	+1	known	frame_shift_del	c.478	p.T162fs	0.999	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780				128	0	0	52	11	17.4603
TSPAN1	0	genome.wustl.edu	37	1	46650191	46650192	+	RNA	INS	-	-	GG			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	46650191	46650192	-	GG	INS	TSPAN1	ENST00000482143	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	TSPAN1	HGNC	ENSG00000117472				136	1	0.729927	81	30	27.027
LRRC41	0	genome.wustl.edu	37	1	46752129	46752129	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	46752129	46752129	A	-	DEL	LRRC41	ENST00000343304	human	ensembl	74_37	-1	known	frame_shift_del	c.400	p.S134fs	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128				183	1	0.543478	65	17	20.7317
ENSG00000266993	0	genome.wustl.edu	37	1	52264099	52264099	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	52264099	52264099	A	-	DEL	ENSG00000266993	ENST00000586761	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-657D16.3	Clone_based_vega_gene	ENSG00000266993				71	0	0	25	11	30.5556
ZCCHC11	0	genome.wustl.edu	37	1	52947290	52947291	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	52947290	52947291	-	G	INS	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	frame_shift_ins	c.1653_1652	p.R553fs	0.989:0.997	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				122	0	0	80	29	26.6055
ZCCHC11	0	genome.wustl.edu	37	1	52991780	52991780	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	52991780	52991780	T	-	DEL	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	frame_shift_del	c.173	p.N58fs	0.998	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				73	0	0	64	20	23.8095
C1orf141	0	genome.wustl.edu	37	1	67561988	67561988	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	67561988	67561988	T	-	DEL	C1orf141	ENST00000371006	human	ensembl	74_37	-1	known	frame_shift_del	c.363	p.K121fs	0.000	NULL	NULL	-	no_errors	C1orf141	HGNC	ENSG00000203963				30	0	0	25	11	30.5556
SRSF11	0	genome.wustl.edu	37	1	70694389	70694389	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	70694389	70694389	T	-	DEL	SRSF11	ENST00000463877	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	SRSF11	HGNC	ENSG00000116754				20	0	0	15	11	42.3077
LPHN2	0	genome.wustl.edu	37	1	82421520	82421520	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	82421520	82421520	A	-	DEL	LPHN2	ENST00000468283	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LPHN2	HGNC	ENSG00000117114				80	0	0	47	18	27.6923
LRRC8C	0	genome.wustl.edu	37	1	90178382	90178382	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	90178382	90178382	A	-	DEL	LRRC8C	ENST00000370454	human	ensembl	74_37	+1	known	frame_shift_del	c.253	p.K85fs	0.958	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488				166	0	0	88	30	25.4237
ZNF644	0	genome.wustl.edu	37	1	91382293	91382293	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	91382293	91382293	A	-	DEL	ZNF644	ENST00000467231	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF644	HGNC	ENSG00000122482				38	0	0	20	10	33.3333
MTF2	0	genome.wustl.edu	37	1	93602676	93602677	+	RNA	DEL	AA	AA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	93602676	93602677	AA	-	DEL	MTF2	ENST00000467953	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.997	-	-	-	no_errors	MTF2	HGNC	ENSG00000143033				20	0	0	23	5	17.8571
ABCD3	0	genome.wustl.edu	37	1	94982785	94982785	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	94982785	94982785	A	-	DEL	ABCD3	ENST00000464165	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ABCD3	HGNC	ENSG00000117528				24	0	0	23	16	41.0256
DPYD	0	genome.wustl.edu	37	1	97771791	97771791	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	1	97771791	97771791	A	-	DEL	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	frame_shift_del	c.2121	p.F707fs	1.000	pfam_Dihydroorotate_DH_1_2,pfam_tRNA_hU_synthase,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				341	0	0	129	61	32.1053
CWF19L1	0	genome.wustl.edu	37	10	101992924	101992926	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	101992924	101992926	AAA	-	DEL	CWF19L1	ENST00000468709	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.167:0.180:0.200	-	-	-	no_errors	CWF19L1	HGNC	ENSG00000095485				113	1	0.877193	27	33	55
PAX2	0	genome.wustl.edu	37	10	102587324	102587324	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	102587324	102587324	C	-	DEL	PAX2	ENST00000428433	human	ensembl	74_37	+1	known	frame_shift_del	c.1202	p.R403fs	1.000	pfam_Pax2_C	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX2	HGNC	ENSG00000075891				169	0	0	91	28	23.5294
FAM178A	0	genome.wustl.edu	37	10	102684424	102684424	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	102684424	102684424	C	-	DEL	FAM178A	ENST00000370269	human	ensembl	74_37	+1	known	frame_shift_del	c.1666	p.P557fs	1.000	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906				193	0	0	127	7	5.22388
LBX1	0	genome.wustl.edu	37	10	102987157	102987157	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	102987157	102987157	G	-	DEL	LBX1	ENST00000370193	human	ensembl	74_37	-1	known	frame_shift_del	c.716	p.P239fs	0.997	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	LBX1	HGNC	ENSG00000138136				45	0	0	19	7	26.9231
LBX1	0	genome.wustl.edu	37	10	102987448	102987448	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	102987448	102987448	T	-	DEL	LBX1	ENST00000370193	human	ensembl	74_37	-1	known	frame_shift_del	c.425	p.K142fs	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	LBX1	HGNC	ENSG00000138136				226	0	0	101	6	5.60748
BTRC	0	genome.wustl.edu	37	10	103310572	103310573	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	103310572	103310573	-	C	INS	BTRC	ENST00000370187	human	ensembl	74_37	+1	known	frame_shift_ins	c.1773_1774	p.R593fs	0.998:1.000	NULL	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167				177	0	0	79	34	30.0885
XPNPEP1	0	genome.wustl.edu	37	10	111651337	111651337	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	111651337	111651337	T	-	DEL	XPNPEP1	ENST00000475123	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	XPNPEP1	HGNC	ENSG00000108039				17	0	0	9	10	52.6316
KIAA1598	0	genome.wustl.edu	37	10	118687324	118687324	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	118687324	118687324	G	-	DEL	KIAA1598	ENST00000392903	human	ensembl	74_37	-1	known	frame_shift_del	c.1091	p.P364fs	0.995	superfamily_Adenylate_cyclase-assoc_CAP_N	superfamily_Adenylate_cyclase-assoc_CAP_N	-	no_errors	KIAA1598	HGNC	ENSG00000187164				208	0	0	77	30	28.0374
C10orf88	0	genome.wustl.edu	37	10	124711510	124711510	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	124711510	124711510	T	-	DEL	C10orf88	ENST00000481909	human	ensembl	74_37	-1	known	frame_shift_del	c.401	p.N134fs	0.704	NULL	NULL	-	no_errors	C10orf88	HGNC	ENSG00000119965				39	0	0	20	12	37.5
OAT	0	genome.wustl.edu	37	10	126091634	126091634	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	126091634	126091634	A	-	DEL	OAT	ENST00000471127	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OAT	HGNC	ENSG00000065154				244	1	0.408163	103	43	29.4521
MKI67	0	genome.wustl.edu	37	10	129913974	129913974	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	129913974	129913974	T	-	DEL	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	frame_shift_del	c.698	p.N233fs	0.003	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				66	0	0	57	19	25
DPYSL4	0	genome.wustl.edu	37	10	134017206	134017206	+	RNA	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	134017206	134017206	C	-	DEL	DPYSL4	ENST00000471544	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	DPYSL4	HGNC	ENSG00000151640				18	0	0	12	3	20
TTC40	0	genome.wustl.edu	37	10	134628238	134628238	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	134628238	134628238	G	-	DEL	TTC40	ENST00000263170	human	ensembl	74_37	-1	known	frame_shift_del	c.1684	p.R562fs	0.291	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811				39	0	0	21	17	44.7368
ST8SIA6	0	genome.wustl.edu	37	10	17363320	17363321	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	17363320	17363321	-	T	INS	ST8SIA6	ENST00000377602	human	ensembl	74_37	-1	known	frame_shift_ins	c.754_753	p.A251fs	0.017:0.024	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA6	HGNC	ENSG00000148488				84	0	0	50	27	35.0649
KIAA1217	0	genome.wustl.edu	37	10	24784015	24784018	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	24784015	24784018	AAAA	-	DEL	KIAA1217	ENST00000460373	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000:0.003:0.002:0.000	-	-	-	no_errors	KIAA1217	HGNC	ENSG00000120549				47	0	0	19	7	26.9231
SVIL	0	genome.wustl.edu	37	10	29760116	29760116	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	29760116	29760116	C	-	DEL	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	frame_shift_del	c.5586	p.M1863fs	0.474	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				69	0	0	13	8	38.0952
FBXO18	0	genome.wustl.edu	37	10	5966439	5966439	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	5966439	5966439	A	-	DEL	FBXO18	ENST00000379999	human	ensembl	74_37	+1	known	frame_shift_del	c.2717	p.K907fs	0.021	superfamily_P-loop_NTPase	pfam_UvrD-like_ATP-bd,pfam_F-box_dom,superfamily_P-loop_NTPase,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO18	HGNC	ENSG00000134452				117	0	0	38	20	34.4828
RTKN2	0	genome.wustl.edu	37	10	63958149	63958149	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	63958149	63958149	T	-	DEL	RTKN2	ENST00000373789	human	ensembl	74_37	-1	known	frame_shift_del	c.1348	p.I450fs	1.000	NULL	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010				149	0	0	79	22	21.7822
JMJD1C	0	genome.wustl.edu	37	10	64966903	64966903	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	64966903	64966903	T	-	DEL	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	frame_shift_del	c.4526	p.N1509fs	0.985	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				189	0	0	120	53	30.6358
KAT6B	0	genome.wustl.edu	37	10	76736962	76736962	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	76736962	76736962	A	-	DEL	KAT6B	ENST00000490365	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	KAT6B	HGNC	ENSG00000156650				8	0	0	4	7	63.6364
DLG5	0	genome.wustl.edu	37	10	79570872	79570873	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	79570872	79570873	-	GG	INS	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	frame_shift_ins	c.4443_4442	p.A1482fs	0.852:0.901	superfamily_PDZ	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				115	0	0	33	20	37.7358
MBL1P	0	genome.wustl.edu	37	10	81680655	81680656	+	RNA	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	81680655	81680656	-	A	INS	MBL1P	ENST00000480805	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.001	-	-	-	no_errors	MBL1P	HGNC	ENSG00000242600				20	0	0	9	3	25
LARP4B	0	genome.wustl.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	890939	890939	T	-	DEL	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.T163fs	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				96	0	0	48	20	29.4118
IFIT1	0	genome.wustl.edu	37	10	91163033	91163033	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	10	91163033	91163033	A	-	DEL	IFIT1	ENST00000371804	human	ensembl	74_37	+1	known	frame_shift_del	c.1001	p.K336fs	0.004	pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1	HGNC	ENSG00000185745				128	1	0.775194	65	13	16.6667
AMPD3	0	genome.wustl.edu	37	11	10500145	10500145	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	10500145	10500145	C	-	DEL	AMPD3	ENST00000396553	human	ensembl	74_37	+1	known	frame_shift_del	c.294	p.P100fs	0.003	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD3	HGNC	ENSG00000133805				511	0	0	178	53	22.9437
C11orf63	0	genome.wustl.edu	37	11	122775058	122775058	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	122775058	122775058	A	-	DEL	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	frame_shift_del	c.770	p.N259fs	1.000	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				528	0	0	208	77	27.0175
OR10G8	0	genome.wustl.edu	37	11	123900397	123900397	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	123900397	123900397	C	-	DEL	OR10G8	ENST00000431524	human	ensembl	74_37	+1	known	frame_shift_del	c.68	p.L25fs	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G8	HGNC	ENSG00000234560				328	0	0	134	54	28.7234
PKNOX2	0	genome.wustl.edu	37	11	125301354	125301354	+	RNA	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	125301354	125301354	G	-	DEL	PKNOX2	ENST00000530517	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.181	-	-	-	no_errors	PKNOX2	HGNC	ENSG00000165495				46	0	0	14	6	30
JAM3	0	genome.wustl.edu	37	11	134010644	134010644	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	134010644	134010644	T	-	DEL	JAM3	ENST00000529443	human	ensembl	74_37	+1	known	frame_shift_del	c.370	p.F125fs	1.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	JAM3	HGNC	ENSG00000166086				87	0	0	35	9	20.4545
SPTY2D1	0	genome.wustl.edu	37	11	18638501	18638501	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	18638501	18638501	T	-	DEL	SPTY2D1	ENST00000336349	human	ensembl	74_37	-1	known	frame_shift_del	c.96	p.D33fs	1.000	NULL	pfam_Chromatin_SPT2,smart_Chromatin_SPT2	-	no_errors	SPTY2D1	HGNC	ENSG00000179119				155	0	0	97	31	24.2188
TRPM5	0	genome.wustl.edu	37	11	2434791	2434791	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	2434791	2434791	C	-	DEL	TRPM5	ENST00000452833	human	ensembl	74_37	-1	known	frame_shift_del	c.1924	p.D642fs	0.993	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985				53	0	0	21	2	8.69565
KCNQ1	0	genome.wustl.edu	37	11	2609949	2609949	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	2609949	2609949	A	-	DEL	KCNQ1	ENST00000155840	human	ensembl	74_37	+1	known	frame_shift_del	c.1258	p.K422fs	0.975	prints_K_chnl_volt-dep_KCQN1	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCQN1,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ1	HGNC	ENSG00000053918				52	0	0	32	10	23.8095
CCDC73	0	genome.wustl.edu	37	11	32637520	32637520	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	32637520	32637520	T	-	DEL	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	frame_shift_del	c.1341	p.E448fs	0.000	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				58	0	0	28	13	31.7073
PAMR1	0	genome.wustl.edu	37	11	35513670	35513670	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	35513670	35513670	C	-	DEL	PAMR1	ENST00000278360	human	ensembl	74_37	-1	known	frame_shift_del	c.302	p.G101fs	0.999	smart_EG-like_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_EG-like_dom,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	PAMR1	HGNC	ENSG00000149090				509	0	0	175	57	24.569
ZNF408	0	genome.wustl.edu	37	11	46726476	46726477	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	46726476	46726477	-	C	INS	ZNF408	ENST00000311764	human	ensembl	74_37	+1	known	frame_shift_ins	c.1226_1227	p.C411fs	1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF408	HGNC	ENSG00000175213				171	0	0	85	35	29.1667
MADD	0	genome.wustl.edu	37	11	47312236	47312236	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	47312236	47312236	G	-	DEL	MADD	ENST00000311027	human	ensembl	74_37	+1	known	frame_shift_del	c.3230	p.D1079fs	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				134	0	0	48	27	36
PTPRJ	0	genome.wustl.edu	37	11	48161293	48161293	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	48161293	48161293	C	-	DEL	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	frame_shift_del	c.2408	p.T805fs	0.000	superfamily_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				83	0	0	29	7	19.4444
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				98	0	0	40	10	20
TNKS1BP1	0	genome.wustl.edu	37	11	57070273	57070273	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	57070273	57070273	G	-	DEL	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	frame_shift_del	c.4343	p.P1448fs	0.014	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				16	0	0	5	4	44.4444
CTNND1	0	genome.wustl.edu	37	11	57569589	57569589	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	57569589	57569589	A	-	DEL	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	frame_shift_del	c.1341	p.N449fs	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561				590	0	0	257	93	26.5714
DDB1	0	genome.wustl.edu	37	11	61070097	61070097	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	61070097	61070097	G	-	DEL	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	frame_shift_del	c.3069	p.T1024fs	0.280	pfam_Cleavage/polyA-sp_fac_asu_C	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986				331	0	0	123	47	27.6471
ROM1	0	genome.wustl.edu	37	11	62381084	62381084	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	62381084	62381084	G	-	DEL	ROM1	ENST00000278833	human	ensembl	74_37	+1	known	frame_shift_del	c.331	p.L114fs	0.023	pfam_Tetraspanin/Peripherin,prints_Peripherin/rom-1	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Peripherin/rom-1	-	no_errors	ROM1	HGNC	ENSG00000149489				85	0	0	26	14	35
GANAB	0	genome.wustl.edu	37	11	62393815	62393815	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	62393815	62393815	A	-	DEL	GANAB	ENST00000346178	human	ensembl	74_37	-1	known	frame_shift_del	c.2682	p.V895fs	0.854	NULL	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GANAB	HGNC	ENSG00000089597				153	0	0	52	23	30.6667
ATG2A	0	genome.wustl.edu	37	11	64662521	64662521	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	64662521	64662521	C	-	DEL	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	frame_shift_del	c.5747	p.G1916fs	1.000	pfam_Autophagy-rel_C	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046				208	0	0	85	26	23.4234
PPP2R5B	0	genome.wustl.edu	37	11	64693222	64693222	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	64693222	64693222	C	-	DEL	PPP2R5B	ENST00000164133	human	ensembl	74_37	+1	known	frame_shift_del	c.16	p.P7fs	1.000	pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5B	HGNC	ENSG00000068971				42	0	0	7	5	41.6667
SYVN1	0	genome.wustl.edu	37	11	64897506	64897508	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	64897506	64897508	GGA	-	DEL	SYVN1	ENST00000377190	human	ensembl	74_37	-1	known	in_frame_del	c.1376_1374	p.P459in_frame_del	1.000:1.000:0.978	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SYVN1	HGNC	ENSG00000162298				25	0	0	8	7	46.6667
MALAT1	0	genome.wustl.edu	37	11	65265584	65265584	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	65265584	65265584	A	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				120	0	0	56	12	17.6471
PCNXL3	0	genome.wustl.edu	37	11	65404014	65404014	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	65404014	65404014	C	-	DEL	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	frame_shift_del	c.5746	p.R1917fs	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				43	0	0	12	5	29.4118
EFEMP2	0	genome.wustl.edu	37	11	65637334	65637336	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	65637334	65637336	AGG	-	DEL	EFEMP2	ENST00000307998	human	ensembl	74_37	-1	known	in_frame_del	c.721_719	p.S240in_frame_del	1.000:1.000:1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	EFEMP2	HGNC	ENSG00000172638				208	0	0	56	37	39.7849
RPS6KB2	0	genome.wustl.edu	37	11	67196696	67196696	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	67196696	67196696	G	-	DEL	RPS6KB2	ENST00000312629	human	ensembl	74_37	+1	known	frame_shift_del	c.225	p.G77fs	0.994	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634				232	1	0.429185	88	28	24.1379
USP35	0	genome.wustl.edu	37	11	77920855	77920856	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	77920855	77920856	-	C	INS	USP35	ENST00000529308	human	ensembl	74_37	+1	known	frame_shift_ins	c.1954_1955	p.T655fs	0.000:0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				51	0	0	14	6	30
CTSC	0	genome.wustl.edu	37	11	88068108	88068108	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	88068108	88068108	A	-	DEL	CTSC	ENST00000227266	human	ensembl	74_37	-1	known	frame_shift_del	c.315	p.F105fs	1.000	pfam_CathepsinC_exc	pfam_Peptidase_C1A_C,pfam_CathepsinC_exc,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSC	HGNC	ENSG00000109861				101	0	0	35	16	31.3725
SCARNA9	0	genome.wustl.edu	37	11	93454921	93454921	+	RNA	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	11	93454921	93454921	G	-	DEL	SCARNA9	ENST00000530422	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	SCARNA9	HGNC	ENSG00000254911				46	0	0	41	13	24.0741
SLC41A2	0	genome.wustl.edu	37	12	105198777	105198777	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	105198777	105198777	A	-	DEL	SLC41A2	ENST00000549713	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.849	-	-	-	no_errors	SLC41A2	HGNC	ENSG00000136052				48	0	0	35	20	36.3636
TCHP	0	genome.wustl.edu	37	12	110344435	110344435	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	110344435	110344435	A	-	DEL	TCHP	ENST00000312777	human	ensembl	74_37	+1	known	frame_shift_del	c.515	p.K174fs	1.000	NULL	NULL	-	no_errors	TCHP	HGNC	ENSG00000139437				91	0	0	55	13	19.1176
TAS2R14	0	genome.wustl.edu	37	12	11090836	11090836	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	11090836	11090836	T	-	DEL	TAS2R14	ENST00000381852	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TAS2R14	HGNC	ENSG00000212127				68	0	0	27	11	28.9474
RASAL1	0	genome.wustl.edu	37	12	113565943	113565943	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	113565943	113565943	C	-	DEL	RASAL1	ENST00000546530	human	ensembl	74_37	-1	known	frame_shift_del	c.163	p.E55fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASAL1	HGNC	ENSG00000111344				625	1	0.159744	206	78	27.4648
MED13L	0	genome.wustl.edu	37	12	116429071	116429073	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	116429071	116429073	GGA	-	DEL	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	in_frame_del	c.3688_3686	p.L1229in_frame_del	1.000:0.927:1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				211	0	0	113	31	21.5278
VPS37B	0	genome.wustl.edu	37	12	123351892	123351893	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	123351892	123351893	GG	-	DEL	VPS37B	ENST00000267202	human	ensembl	74_37	-1	known	frame_shift_del	c.629_628	p.P210fs	0.609:0.698	NULL	pfam_Mod_r	-	no_errors	VPS37B	HGNC	ENSG00000139722				46	0	0	22	9	29.0323
ENSG00000256339	0	genome.wustl.edu	37	12	14994091	14994092	+	RNA	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	14994091	14994092	-	A	INS	ENSG00000256339	ENST00000444324	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006:0.008	-	-	-	no_errors	RP11-233G1.4	Clone_based_vega_gene	ENSG00000256339				125	0	0	72	28	28
MGST1	0	genome.wustl.edu	37	12	16516905	16516906	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	16516905	16516906	-	T	INS	MGST1	ENST00000010404	human	ensembl	74_37	+1	known	frame_shift_ins	c.398_399	p.V136fs	0.062:0.094	pfam_Membr-assoc_MAPEG	pfam_Membr-assoc_MAPEG	-	no_errors	MGST1	HGNC	ENSG00000008394				224	0	0	122	45	26.9461
PLEKHA5	0	genome.wustl.edu	37	12	19514518	19514518	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	19514518	19514518	A	-	DEL	PLEKHA5	ENST00000317589	human	ensembl	74_37	+1	known	frame_shift_del	c.3177	p.T1062fs	0.273	NULL	pfam_Pleckstrin_homology,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				34	0	0	19	8	29.6296
SLCO1B1	0	genome.wustl.edu	37	12	21350012	21350012	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	21350012	21350012	A	-	DEL	SLCO1B1	ENST00000256958	human	ensembl	74_37	+1	known	frame_shift_del	c.860	p.E289fs	0.019	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538				161	0	0	101	35	25.7353
ABCC9	0	genome.wustl.edu	37	12	22068696	22068696	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	22068696	22068696	T	-	DEL	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	frame_shift_del	c.722	p.K241fs	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				149	0	0	81	39	32.5
ITPR2	0	genome.wustl.edu	37	12	26868529	26868529	+	RNA	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	26868529	26868529	G	-	DEL	ITPR2	ENST00000540791	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ITPR2	HGNC	ENSG00000123104				10	0	0	8	5	38.4615
TM7SF3	0	genome.wustl.edu	37	12	27152717	27152717	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	27152717	27152717	A	-	DEL	TM7SF3	ENST00000539399	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TM7SF3	HGNC	ENSG00000064115				22	0	0	10	8	44.4444
PTHLH	0	genome.wustl.edu	37	12	28114898	28114898	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	28114898	28114898	T	-	DEL	PTHLH	ENST00000354417	human	ensembl	74_37	-1	known	frame_shift_del	c.557	p.K186fs	0.135	NULL	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494				15	0	0	9	6	40
GXYLT1	0	genome.wustl.edu	37	12	42491722	42491722	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	42491722	42491722	A	-	DEL	GXYLT1	ENST00000398675	human	ensembl	74_37	-1	known	frame_shift_del	c.978	p.H327fs	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233				77	0	0	52	14	21.2121
SENP1	0	genome.wustl.edu	37	12	48458896	48458896	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	48458896	48458896	T	-	DEL	SENP1	ENST00000004980	human	ensembl	74_37	-1	known	frame_shift_del	c.1227	p.G410fs	0.206	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387				58	0	0	32	7	17.9487
KCNA6	0	genome.wustl.edu	37	12	4919441	4919441	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	4919441	4919441	C	-	DEL	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	frame_shift_del	c.234	p.L80fs	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				217	0	0	51	26	33.7662
KMT2D	0	genome.wustl.edu	37	12	49433773	49433773	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	49433773	49433773	G	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.7780	p.L2594fs	0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				33	0	0	11	6	35.2941
GALNT6	0	genome.wustl.edu	37	12	51771119	51771119	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	51771119	51771119	G	-	DEL	GALNT6	ENST00000356317	human	ensembl	74_37	-1	known	frame_shift_del	c.524	p.P175fs	0.100	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT6	HGNC	ENSG00000139629				69	0	0	27	8	22.8571
TENC1	0	genome.wustl.edu	37	12	53452903	53452903	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	53452903	53452903	C	-	DEL	TENC1	ENST00000314276	human	ensembl	74_37	+1	known	frame_shift_del	c.1508	p.P505fs	0.202	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TENC1	HGNC	ENSG00000111077				125	1	0.793651	54	13	19.403
R3HDM2	0	genome.wustl.edu	37	12	57648750	57648750	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	57648750	57648750	C	-	DEL	R3HDM2	ENST00000347140	human	ensembl	74_37	-1	known	frame_shift_del	c.2737	p.D913fs	0.998	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912				120	1	0.826446	56	17	23.2877
B4GALNT1	0	genome.wustl.edu	37	12	58025103	58025103	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	58025103	58025103	C	-	DEL	B4GALNT1	ENST00000341156	human	ensembl	74_37	-1	known	frame_shift_del	c.263	p.G88fs	0.099	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT1	HGNC	ENSG00000135454				259	0	0	109	36	24.8276
CD4	0	genome.wustl.edu	37	12	6924043	6924043	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	6924043	6924043	G	-	DEL	CD4	ENST00000011653	human	ensembl	74_37	+1	known	frame_shift_del	c.492	p.K167fs	0.000	pfam_Ig_C2-set,smart_Ig_sub,smart_Ig_sub2	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610				151	1	0.657895	59	17	22.3684
LRRIQ1	0	genome.wustl.edu	37	12	85450034	85450035	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	85450034	85450035	-	A	INS	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	frame_shift_ins	c.1463_1464	p.R491fs	0.000:0.001	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				90	0	0	30	33	52.381
CEP290	0	genome.wustl.edu	37	12	88449444	88449444	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	12	88449444	88449444	T	-	DEL	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_del	c.6875	p.N2292fs	0.987	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				15	0	0	7	6	46.1538
NALCN	0	genome.wustl.edu	37	13	101735497	101735497	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	101735497	101735497	A	-	DEL	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	frame_shift_del	c.3636	p.F1212fs	0.998	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				156	0	0	44	21	32.3077
NALCN	0	genome.wustl.edu	37	13	101997731	101997732	+	Frame_Shift_Ins	INS	-	-	GT			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	101997731	101997732	-	GT	INS	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	frame_shift_ins	c.685_684	p.C228fs	1.000:0.991	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				170	0	0	70	24	25.5319
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				32	0	0	28	10	26.3158
LATS2	0	genome.wustl.edu	37	13	21563349	21563349	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	21563349	21563349	G	-	DEL	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	frame_shift_del	c.570	p.Y191fs	0.661	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				206	0	0	55	17	23.6111
FGF9	0	genome.wustl.edu	37	13	22275330	22275330	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	22275330	22275330	A	-	DEL	FGF9	ENST00000382353	human	ensembl	74_37	+1	known	frame_shift_del	c.383	p.K129fs	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF9	HGNC	ENSG00000102678				34	0	0	21	13	38.2353
MEDAG	0	genome.wustl.edu	37	13	31480852	31480852	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	31480852	31480852	G	-	DEL	MEDAG	ENST00000380482	human	ensembl	74_37	+1	known	frame_shift_del	c.200	p.G69fs	0.590	NULL	NULL	-	no_errors	MEDAG	HGNC	ENSG00000102802				14	0	0	2	3	60
SPG20	0	genome.wustl.edu	37	13	36886628	36886628	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	36886628	36886628	A	-	DEL	SPG20	ENST00000491805	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	SPG20	HGNC	ENSG00000133104				111	0	0	75	22	22.6804
EXOSC8	0	genome.wustl.edu	37	13	37581201	37581201	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	37581201	37581201	A	-	DEL	EXOSC8	ENST00000389704	human	ensembl	74_37	+1	known	frame_shift_del	c.480	p.N162fs	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC8	HGNC	ENSG00000120699				73	0	0	26	19	42.2222
FREM2	0	genome.wustl.edu	37	13	39261568	39261570	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	39261568	39261570	GCT	-	DEL	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	in_frame_del	c.87_89	p.L33in_frame_del	0.000:0.011:0.013	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				16	0	0	10	3	23.0769
FREM2	0	genome.wustl.edu	37	13	39266588	39266589	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	39266588	39266589	-	C	INS	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	frame_shift_ins	c.5107_5108	p.Q1705fs	0.011:0.058	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				201	0	0	87	49	36.0294
PCDH9	0	genome.wustl.edu	37	13	67801071	67801071	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	67801071	67801071	T	-	DEL	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	frame_shift_del	c.1502	p.N501fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				206	0	0	96	32	25
RBM26	0	genome.wustl.edu	37	13	79918807	79918807	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	79918807	79918807	T	-	DEL	RBM26	ENST00000438724	human	ensembl	74_37	-1	known	frame_shift_del	c.2109	p.K703fs	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746				71	0	0	31	9	22.5
PTMAP5	0	genome.wustl.edu	37	13	82264963	82264963	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	13	82264963	82264963	A	-	DEL	PTMAP5	ENST00000607242	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTMAP5	HGNC	ENSG00000214182				99	0	0	33	15	31.25
RTL1	0	genome.wustl.edu	37	14	101350949	101350949	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	101350949	101350949	G	-	DEL	RTL1	ENST00000534062	human	ensembl	74_37	-1	known	frame_shift_del	c.177	p.S60fs	0.549	NULL	pfam_Retrotrans_gag_dom,superfamily_Peptidase_aspartic_dom	-	no_errors	RTL1	HGNC	ENSG00000254656				77	0	0	43	5	10.4167
ENSG00000258851	0	genome.wustl.edu	37	14	104028197	104028197	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	104028197	104028197	A	-	DEL	ENSG00000258851	ENST00000556332	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-894P9.2	Clone_based_vega_gene	ENSG00000258851				38	0	0	26	8	23.5294
SALL2	0	genome.wustl.edu	37	14	21993380	21993380	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	21993380	21993380	G	-	DEL	SALL2	ENST00000327430	human	ensembl	74_37	-1	known	frame_shift_del	c.482	p.P161fs	0.472	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821				133	0	0	34	12	26.087
C14orf93	0	genome.wustl.edu	37	14	23468135	23468135	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	23468135	23468135	G	-	DEL	C14orf93	ENST00000299088	human	ensembl	74_37	-1	known	frame_shift_del	c.98	p.T33fs	0.256	NULL	NULL	-	no_errors	C14orf93	HGNC	ENSG00000100802				122	0	0	49	25	33.7838
STRN3	0	genome.wustl.edu	37	14	31398422	31398423	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	31398422	31398423	-	C	INS	STRN3	ENST00000357479	human	ensembl	74_37	-1	known	frame_shift_ins	c.1084_1083	p.K361fs	1.000:1.000	NULL	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN3	HGNC	ENSG00000196792				166	0	0	94	45	32.3741
MIS18BP1	0	genome.wustl.edu	37	14	45700418	45700418	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	45700418	45700418	T	-	DEL	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	frame_shift_del	c.1520	p.N507fs	0.464	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				94	0	0	52	35	40.2299
SOS2	0	genome.wustl.edu	37	14	50606709	50606709	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	50606709	50606709	T	-	DEL	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	frame_shift_del	c.2736	p.K912fs	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				76	0	0	48	25	34.2466
ENSG00000258745	0	genome.wustl.edu	37	14	51379087	51379087	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	51379087	51379087	T	-	DEL	ENSG00000258745	ENST00000557343	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.559	-	-	-	no_errors	RP11-218E20.5	Clone_based_vega_gene	ENSG00000258745				90	0	0	55	26	32.0988
C14orf37	0	genome.wustl.edu	37	14	58598352	58598353	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	58598352	58598353	-	C	INS	C14orf37	ENST00000267485	human	ensembl	74_37	-1	known	frame_shift_ins	c.1709_1708	p.E570fs	0.000:0.000	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971				130	0	0	61	17	21.7949
ARID4A	0	genome.wustl.edu	37	14	58814451	58814451	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	58814451	58814451	A	-	DEL	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	frame_shift_del	c.1259	p.D423fs	0.935	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219				92	0	0	61	18	22.7848
ENSG00000272909	0	genome.wustl.edu	37	14	64908058	64908058	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	64908058	64908058	T	-	DEL	ENSG00000272909	ENST00000609125	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CTD-2555O16.4	Clone_based_vega_gene	ENSG00000272909				103	0	0	34	16	32
RAD51B	0	genome.wustl.edu	37	14	68353927	68353927	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	68353927	68353927	T	-	DEL	RAD51B	ENST00000555907	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	RAD51B	HGNC	ENSG00000182185				63	0	0	33	10	23.2558
ELMSAN1	0	genome.wustl.edu	37	14	74206606	74206606	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	74206606	74206606	G	-	DEL	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	frame_shift_del	c.106	p.Q36fs	0.686	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				199	0	0	52	19	26.7606
ENSG00000258891	0	genome.wustl.edu	37	14	74363249	74363249	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	74363249	74363249	T	-	DEL	ENSG00000258891	ENST00000554009	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP5-1021I20.5	Clone_based_vega_gene	ENSG00000258891				119	0	0	62	22	26.1905
TTC8	0	genome.wustl.edu	37	14	89338723	89338724	+	In_Frame_Ins	INS	-	-	CAA			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	89338723	89338724	-	CAA	INS	TTC8	ENST00000338104	human	ensembl	74_37	+1	known	in_frame_ins	c.1322_1323	p.445in_frame_insN	1.000:0.989	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC8	HGNC	ENSG00000165533				155	0	0	66	16	19.5122
BTBD7	0	genome.wustl.edu	37	14	93709220	93709221	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	93709220	93709221	-	T	INS	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	frame_shift_ins	c.2798_2797	p.T933fs	0.895:0.136	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114				155	0	0	70	34	32.6923
BTBD7	0	genome.wustl.edu	37	14	93720047	93720048	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	93720047	93720048	-	T	INS	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	frame_shift_ins	c.1698_1697	p.N566fs	1.000:1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114				198	0	0	91	27	22.8814
UNC79	0	genome.wustl.edu	37	14	94088050	94088050	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	14	94088050	94088050	A	-	DEL	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	frame_shift_del	c.4537	p.K1515fs	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				119	0	0	73	30	29.1262
SNHG14	0	genome.wustl.edu	37	15	25227367	25227367	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	25227367	25227367	T	-	DEL	SNHG14	ENST00000551361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				27	0	0	16	3	15.7895
SNHG14	0	genome.wustl.edu	37	15	25490509	25490509	+	RNA	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	25490509	25490509	C	-	DEL	SNHG14	ENST00000453082	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				90	0	0	83	24	22.4299
ANP32AP1	0	genome.wustl.edu	37	15	35530357	35530357	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	35530357	35530357	T	-	DEL	ANP32AP1	ENST00000560832	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	ANP32AP1	HGNC	ENSG00000259516				13	0	0	6	5	45.4545
LCMT2	0	genome.wustl.edu	37	15	43621352	43621352	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	43621352	43621352	C	-	DEL	LCMT2	ENST00000305641	human	ensembl	74_37	-1	known	frame_shift_del	c.1336	p.V446fs	0.000	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806				158	0	0	74	28	27.451
TUBGCP4	0	genome.wustl.edu	37	15	43672327	43672327	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	43672327	43672327	G	-	DEL	TUBGCP4	ENST00000260383	human	ensembl	74_37	+1	known	frame_shift_del	c.487	p.L165fs	1.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP4	HGNC	ENSG00000137822				115	0	0	32	18	36
ENSG00000259185	0	genome.wustl.edu	37	15	52201131	52201131	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	52201131	52201131	T	-	DEL	ENSG00000259185	ENST00000559302	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-56B16.4	Clone_based_vega_gene	ENSG00000259185				10	0	0	7	5	41.6667
HERC1	0	genome.wustl.edu	37	15	63970298	63970300	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	63970298	63970300	CTC	-	DEL	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	in_frame_del	c.6816_6814	p.E2272in_frame_del	1.000:1.000:1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				88	0	0	32	9	21.9512
MAN2C1	0	genome.wustl.edu	37	15	75651720	75651720	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	75651720	75651720	G	-	DEL	MAN2C1	ENST00000267978	human	ensembl	74_37	-1	known	frame_shift_del	c.1995	p.T666fs	0.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400				77	0	0	33	7	17.5
KIAA1024	0	genome.wustl.edu	37	15	79750586	79750586	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	79750586	79750586	A	-	DEL	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	frame_shift_del	c.2097	p.S702fs	0.527	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				254	1	0.392157	91	50	35.461
IQGAP1	0	genome.wustl.edu	37	15	91018049	91018050	+	RNA	DEL	TT	TT	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	91018049	91018050	TT	-	DEL	IQGAP1	ENST00000560020	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.121:0.145	-	-	-	no_errors	IQGAP1	HGNC	ENSG00000140575				16	0	0	16	8	33.3333
SLCO3A1	0	genome.wustl.edu	37	15	92706441	92706441	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	15	92706441	92706441	A	-	DEL	SLCO3A1	ENST00000555549	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.813	-	-	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				71	0	0	23	9	28.125
CACNA1H	0	genome.wustl.edu	37	16	1254068	1254068	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	1254068	1254068	C	-	DEL	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	frame_shift_del	c.2061	p.P689fs	1.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				19	0	0	10	3	23.0769
PTX4	0	genome.wustl.edu	37	16	1536186	1536186	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	1536186	1536186	G	-	DEL	PTX4	ENST00000447419	human	ensembl	74_37	-1	known	frame_shift_del	c.1191	p.G398fs	0.011	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	PTX4	HGNC	ENSG00000251692				74	0	0	36	5	12.1951
TMC5	0	genome.wustl.edu	37	16	19451796	19451797	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	19451796	19451797	TA	-	DEL	TMC5	ENST00000396229	human	ensembl	74_37	+1	known	frame_shift_del	c.436_437	p.Y146fs	0.408:0.261	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534				499	0	0	201	49	19.6
GPR139	0	genome.wustl.edu	37	16	20043389	20043389	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	20043389	20043389	G	-	DEL	GPR139	ENST00000570682	human	ensembl	74_37	-1	known	frame_shift_del	c.730	p.R244fs	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR139	HGNC	ENSG00000180269				161	1	0.617284	65	18	21.6867
PKD1	0	genome.wustl.edu	37	16	2167506	2167506	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	2167506	2167506	C	-	DEL	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	frame_shift_del	c.1369	p.V457fs	0.998	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				13	0	0	9	2	18.1818
ATXN2L	0	genome.wustl.edu	37	16	28847350	28847350	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	28847350	28847350	G	-	DEL	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	frame_shift_del	c.2992	p.1002fs	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				217	0	0	92	30	24.5902
ATXN2L	0	genome.wustl.edu	37	16	28847356	28847356	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	28847356	28847356	C	-	DEL	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	frame_shift_del	c.2998	p.Q1002fs	0.998	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				217	0	0	117	13	10
SNX29P2	0	genome.wustl.edu	37	16	29367202	29367202	+	RNA	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	29367202	29367202	G	-	DEL	SNX29P2	ENST00000398878	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNX29P2	HGNC	ENSG00000198106				63	0	0	19	12	38.7097
ZNF174	0	genome.wustl.edu	37	16	3454742	3454742	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	3454742	3454742	T	-	DEL	ZNF174	ENST00000572544	human	ensembl	74_37	+1	putative	frame_shift_del	c.719	p.L242fs	0.001	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF174	HGNC	ENSG00000103343				19	0	0	19	6	24
ENSG00000261270	0	genome.wustl.edu	37	16	56974235	56974236	+	RNA	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	56974235	56974236	-	T	INS	ENSG00000261270	ENST00000565861	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.190:0.106	-	-	-	no_errors	RP11-325K4.3	Clone_based_vega_gene	ENSG00000261270				40	0	0	30	8	21.0526
CNGB1	0	genome.wustl.edu	37	16	57938728	57938728	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	57938728	57938728	C	-	DEL	CNGB1	ENST00000251102	human	ensembl	74_37	-1	known	frame_shift_del	c.2544	p.L849fs	0.501	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729				297	0	0	80	23	22.3301
CSNK2A2	0	genome.wustl.edu	37	16	58202515	58202515	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	58202515	58202515	T	-	DEL	CSNK2A2	ENST00000262506	human	ensembl	74_37	-1	known	frame_shift_del	c.512	p.K171fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A2	HGNC	ENSG00000070770				64	0	0	36	21	36.8421
CDH8	0	genome.wustl.edu	37	16	61747819	61747819	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	61747819	61747819	T	-	DEL	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	frame_shift_del	c.1580	p.N527fs	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				107	0	0	61	14	18.6667
CDH16	0	genome.wustl.edu	37	16	66945906	66945906	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	66945906	66945906	G	-	DEL	CDH16	ENST00000299752	human	ensembl	74_37	-1	known	frame_shift_del	c.1686	p.K563fs	0.250	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589				184	0	0	58	7	10.7692
CDH16	0	genome.wustl.edu	37	16	66947518	66947519	+	Splice_Site	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	66947518	66947519	-	G	INS	CDH16	ENST00000299752	human	ensembl	74_37	-1	known	splice_site_ins	c.781-3_781-2	e7-2	0.973:0.077	-	-	-	no_errors	CDH16	HGNC	ENSG00000166589				95	0	0	61	30	32.967
HSF4	0	genome.wustl.edu	37	16	67201727	67201727	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	67201727	67201727	C	-	DEL	HSF4	ENST00000264009	human	ensembl	74_37	+1	known	frame_shift_del	c.959	p.P322fs	1.000	NULL	pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF4	HGNC	ENSG00000102878				21	0	0	10	3	23.0769
MIR328	0	genome.wustl.edu	37	16	67236292	67236293	+	RNA	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	67236292	67236293	-	T	INS	MIR328	ENST00000385213	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.001	-	-	-	no_errors	MIR328	HGNC	ENSG00000207948				204	0	0	103	31	23.1343
CTCF	0	genome.wustl.edu	37	16	67645338	67645339	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	67645338	67645339	-	A	INS	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	frame_shift_ins	c.603_604	p.T203fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				142	0	0	56	15	21.1268
RLTPR	0	genome.wustl.edu	37	16	67682131	67682131	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	67682131	67682131	C	-	DEL	RLTPR	ENST00000334583	human	ensembl	74_37	+1	known	frame_shift_del	c.1248	p.P418fs	0.002	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753				38	0	0	7	6	46.1538
PDPR	0	genome.wustl.edu	37	16	70163019	70163020	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	70163019	70163020	-	A	INS	PDPR	ENST00000288050	human	ensembl	74_37	+1	known	frame_shift_ins	c.601_602	p.N202fs	1.000:1.000	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857				458	0	0	275	24	8.02676
HYDIN	0	genome.wustl.edu	37	16	71101153	71101154	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	71101153	71101154	-	G	INS	HYDIN	ENST00000288168	human	ensembl	74_37	-1	known	frame_shift_ins	c.2166_2165	p.S723fs	0.000:0.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				25	0	0	12	8	40
ZNF23	0	genome.wustl.edu	37	16	71483562	71483562	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	71483562	71483562	A	-	DEL	ZNF23	ENST00000357254	human	ensembl	74_37	-1	known	frame_shift_del	c.366	p.F122fs	0.000	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF23	HGNC	ENSG00000167377				277	1	0.359712	146	64	30.4762
ADAMTS18	0	genome.wustl.edu	37	16	77328873	77328874	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	77328873	77328874	-	T	INS	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	frame_shift_ins	c.2953_2952	p.A984fs	0.993:0.999	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				84	0	0	27	19	41.3043
CDYL2	0	genome.wustl.edu	37	16	80718697	80718697	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	80718697	80718697	T	-	DEL	CDYL2	ENST00000570137	human	ensembl	74_37	-1	known	frame_shift_del	c.354	p.Y120fs	0.989	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446				92	0	0	58	28	32.5581
MSLNL	0	genome.wustl.edu	37	16	830291	830291	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	830291	830291	C	-	DEL	MSLNL	ENST00000293892	human	ensembl	74_37	-1	known	frame_shift_del	c.710	p.G237fs	0.001	NULL	pfam_Mesothelin	-	no_errors	MSLNL	HGNC	ENSG00000162006				39	0	0	35	9	20.4545
TLDC1	0	genome.wustl.edu	37	16	84529358	84529360	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	84529358	84529360	CTC	-	DEL	TLDC1	ENST00000343629	human	ensembl	74_37	-1	known	in_frame_del	c.315_313	p.E105in_frame_del	1.000:1.000:1.000	NULL	pfam_TLDc,smart_TLDc	-	no_errors	TLDC1	HGNC	ENSG00000140950				161	0	0	67	26	27.957
COTL1	0	genome.wustl.edu	37	16	84600440	84600440	+	RNA	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	16	84600440	84600440	G	-	DEL	COTL1	ENST00000567278	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COTL1	HGNC	ENSG00000103187				67	0	0	49	9	15.5172
CRK	0	genome.wustl.edu	37	17	1326755	1326757	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	1326755	1326757	AAA	-	DEL	CRK	ENST00000572145	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.352:0.023:0.010	-	-	-	no_errors	CRK	HGNC	ENSG00000167193				65	0	0	34	13	27.6596
ALDH3A1	0	genome.wustl.edu	37	17	19641649	19641649	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	19641649	19641649	G	-	DEL	ALDH3A1	ENST00000225740	human	ensembl	74_37	-1	known	frame_shift_del	c.1334	p.P445fs	0.889	superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602				189	0	0	67	27	28.7234
SPECC1	0	genome.wustl.edu	37	17	20108263	20108263	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	20108263	20108263	A	-	DEL	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	frame_shift_del	c.901	p.N303fs	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				217	1	0.458716	123	20	13.986
NUFIP2	0	genome.wustl.edu	37	17	27614342	27614342	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	27614342	27614342	T	-	DEL	NUFIP2	ENST00000225388	human	ensembl	74_37	-1	known	frame_shift_del	c.670	p.R224fs	1.000	NULL	NULL	-	no_errors	NUFIP2	HGNC	ENSG00000108256				288	1	0.346021	155	57	26.8868
NF1	0	genome.wustl.edu	37	17	29553477	29553478	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	29553477	29553478	-	C	INS	NF1	ENST00000358273	human	ensembl	74_37	+1	known	frame_shift_ins	c.2026_2027	p.I679fs	0.997:0.998	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				96	0	0	24	28	53.8462
ZZEF1	0	genome.wustl.edu	37	17	4009067	4009068	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	4009067	4009068	-	GA	INS	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	frame_shift_ins	c.1314_1313	p.P439fs	0.995:1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				112	0	0	56	16	22.2222
KANSL1	0	genome.wustl.edu	37	17	44109601	44109601	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	44109601	44109601	G	-	DEL	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	frame_shift_del	c.2902	p.Q968fs	0.999	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				197	0	0	47	17	26.5625
IGF2BP1	0	genome.wustl.edu	37	17	47126785	47126785	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	47126785	47126785	G	-	DEL	IGF2BP1	ENST00000290341	human	ensembl	74_37	+1	known	frame_shift_del	c.1713	p.A572fs	1.000	NULL	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP1	HGNC	ENSG00000159217				79	0	0	16	8	33.3333
GP1BA	0	genome.wustl.edu	37	17	4837372	4837373	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	4837372	4837373	-	A	INS	GP1BA	ENST00000329125	human	ensembl	74_37	+1	known	frame_shift_ins	c.1473_1474	p.T493fs	0.000:0.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP1BA	HGNC	ENSG00000185245				151	0	0	61	32	34.4086
ACSF2	0	genome.wustl.edu	37	17	48551137	48551138	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	48551137	48551138	-	CA	INS	ACSF2	ENST00000300441	human	ensembl	74_37	+1	known	frame_shift_ins	c.1587_1588	p.P532fs	1.000:1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF2	HGNC	ENSG00000167107				299	1	0.333333	94	38	28.7879
TOM1L1	0	genome.wustl.edu	37	17	52990096	52990097	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	52990096	52990097	AA	-	DEL	TOM1L1	ENST00000575882	human	ensembl	74_37	+1	known	frame_shift_del	c.292_293	p.K98fs	0.975:1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_VHS	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L1	HGNC	ENSG00000141198				67	0	0	39	14	26.4151
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				314	0	0	52	63	54.7826
CLTC	0	genome.wustl.edu	37	17	57763113	57763115	+	In_Frame_Del	DEL	ATC	ATC	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	57763113	57763115	ATC	-	DEL	CLTC	ENST00000269122	human	ensembl	74_37	+1	known	in_frame_del	c.4771_4773	p.I1591in_frame_del	1.000:1.000:1.000	pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367				236	0	0	113	36	24.1611
VMP1	0	genome.wustl.edu	37	17	57915729	57915731	+	In_Frame_Del	DEL	CAC	CAC	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	CAC	CAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	57915729	57915731	CAC	-	DEL	VMP1	ENST00000262291	human	ensembl	74_37	+1	known	in_frame_del	c.1048_1050	p.H351in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	VMP1	HGNC	ENSG00000062716				119	0	0	42	8	16
RPL12P38	0	genome.wustl.edu	37	17	58512419	58512419	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	58512419	58512419	A	-	DEL	RPL12P38	ENST00000588627	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RPL12P38	HGNC	ENSG00000213228				16	0	0	10	9	47.3684
EFNB3	0	genome.wustl.edu	37	17	7612568	7612568	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	7612568	7612568	G	-	DEL	EFNB3	ENST00000226091	human	ensembl	74_37	+1	known	frame_shift_del	c.697	p.L235fs	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947				81	0	0	29	13	30.9524
DNAH17	0	genome.wustl.edu	37	17	76471926	76471927	+	RNA	DEL	AA	AA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	76471926	76471927	AA	-	DEL	DNAH17	ENST00000586052	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	DNAH17	HGNC	ENSG00000187775				62	0	0	26	3	10.3448
RNF213	0	genome.wustl.edu	37	17	78261867	78261868	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	78261867	78261868	-	C	INS	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	frame_shift_ins	c.515_516	p.L174fs	0.002:0.001	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				40	0	0	19	6	24
HEXDC	0	genome.wustl.edu	37	17	80400208	80400208	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	80400208	80400208	C	-	DEL	HEXDC	ENST00000337014	human	ensembl	74_37	+1	known	frame_shift_del	c.1498	p.R502fs	0.001	NULL	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	-	no_errors	HEXDC	HGNC	ENSG00000169660				60	0	0	38	17	30.9091
HEXDC	0	genome.wustl.edu	37	17	80400297	80400298	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	80400297	80400298	-	G	INS	HEXDC	ENST00000337014	human	ensembl	74_37	+1	known	frame_shift_ins	c.1587_1588	p.A531fs	0.001:0.000	NULL	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	-	no_errors	HEXDC	HGNC	ENSG00000169660				103	0	0	39	31	44.2857
METRNL	0	genome.wustl.edu	37	17	81043007	81043008	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	17	81043007	81043008	-	A	INS	METRNL	ENST00000320095	human	ensembl	74_37	+1	known	frame_shift_ins	c.364_365	p.T124fs	1.000:1.000	NULL	NULL	-	no_errors	METRNL	HGNC	ENSG00000176845				134	0	0	60	19	24.0506
EPG5	0	genome.wustl.edu	37	18	43534484	43534484	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	18	43534484	43534484	A	-	DEL	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	frame_shift_del	c.884	p.L295fs	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				204	0	0	88	44	33.3333
KRI1	0	genome.wustl.edu	37	19	10675651	10675653	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	10675651	10675653	CTT	-	DEL	KRI1	ENST00000312962	human	ensembl	74_37	-1	known	in_frame_del	c.246_244	p.K82in_frame_del	1.000:1.000:1.000	NULL	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347				274	0	0	65	23	26.1364
CARM1	0	genome.wustl.edu	37	19	11015633	11015634	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	11015633	11015634	-	TG	INS	CARM1	ENST00000327064	human	ensembl	74_37	+1	known	frame_shift_ins	c.227_228	p.V80fs	0.999:0.824	pfam_Histone-Arg_MeTrfase_N	pfam_Histone-Arg_MeTrfase_N,pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_mo5U34_MeTrfas-like,pfam_Methyltransf_11	-	no_errors	CARM1	HGNC	ENSG00000142453				140	0	0	43	31	41.8919
ZNF878	0	genome.wustl.edu	37	19	12155893	12155894	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	12155893	12155894	-	CA	INS	ZNF878	ENST00000602107	human	ensembl	74_37	-1	known	frame_shift_ins	c.464_463	p.G155fs	0.172:0.212	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446				47	0	0	40	16	28.5714
PKN1	0	genome.wustl.edu	37	19	14562741	14562741	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	14562741	14562741	C	-	DEL	PKN1	ENST00000342216	human	ensembl	74_37	+1	known	frame_shift_del	c.1089	p.F366fs	0.060	superfamily_C2_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN1	HGNC	ENSG00000123143				47	0	0	20	6	23.0769
SYDE1	0	genome.wustl.edu	37	19	15222547	15222547	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	15222547	15222547	C	-	DEL	SYDE1	ENST00000342784	human	ensembl	74_37	+1	known	frame_shift_del	c.1522	p.T510fs	0.001	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137				74	0	0	31	17	35.4167
WIZ	0	genome.wustl.edu	37	19	15535043	15535043	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	15535043	15535043	G	-	DEL	WIZ	ENST00000389282	human	ensembl	74_37	-1	known	frame_shift_del	c.4747	p.Q1583fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451				31	0	0	20	10	33.3333
GTPBP3	0	genome.wustl.edu	37	19	17448849	17448849	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	17448849	17448849	C	-	DEL	GTPBP3	ENST00000358792	human	ensembl	74_37	+1	known	frame_shift_del	c.86	p.G31fs	0.000	NULL	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299				87	0	0	30	13	30.2326
UBA52	0	genome.wustl.edu	37	19	18684544	18684546	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	18684544	18684546	ACA	-	DEL	UBA52	ENST00000430157	human	ensembl	74_37	+1	known	in_frame_del	c.176_178	p.N60in_frame_del	1.000:1.000:1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	pfam_Ubiquitin_dom,pfam_Ribosomal_L40e,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBA52	HGNC	ENSG00000221983				79	0	0	38	6	13.6364
DMKN	0	genome.wustl.edu	37	19	35989794	35989795	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	35989794	35989795	-	C	INS	DMKN	ENST00000339686	human	ensembl	74_37	-1	known	frame_shift_ins	c.1365_1364	p.V456fs	0.012:0.018	NULL	NULL	-	no_errors	DMKN	HGNC	ENSG00000161249				147	0	0	49	18	26.8657
KMT2B	0	genome.wustl.edu	37	19	36223175	36223175	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	36223175	36223175	C	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_del	c.5725	p.R1911fs	0.999	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				42	0	0	20	4	16.6667
PPP1R14A	0	genome.wustl.edu	37	19	38746893	38746893	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	38746893	38746893	C	-	DEL	PPP1R14A	ENST00000301242	human	ensembl	74_37	-1	known	frame_shift_del	c.87	p.L30fs	0.987	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	-	no_errors	PPP1R14A	HGNC	ENSG00000167641				10	0	0	4	2	33.3333
HNRNPL	0	genome.wustl.edu	37	19	39330959	39330959	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	39330959	39330959	G	-	DEL	HNRNPL	ENST00000221419	human	ensembl	74_37	-1	known	frame_shift_del	c.1010	p.P337fs	1.000	tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRNPL	HGNC	ENSG00000104824				50	0	0	13	4	23.5294
CIC	0	genome.wustl.edu	37	19	42796883	42796883	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	42796883	42796883	C	-	DEL	CIC	ENST00000575354	human	ensembl	74_37	+1	known	frame_shift_del	c.3341	p.P1116fs	0.993	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				172	0	0	45	25	35.7143
PTOV1	0	genome.wustl.edu	37	19	50360301	50360303	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	50360301	50360303	AAG	-	DEL	PTOV1	ENST00000391842	human	ensembl	74_37	+1	known	in_frame_del	c.628_630	p.K212in_frame_del	1.000:1.000:1.000	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960				560	0	0	180	75	29.4118
PTOV1	0	genome.wustl.edu	37	19	50363527	50363527	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	50363527	50363527	G	-	DEL	PTOV1	ENST00000391842	human	ensembl	74_37	+1	known	frame_shift_del	c.1242	p.*417fs	1.000	NULL	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960				46	0	0	23	6	20.6897
ENSG00000267865	0	genome.wustl.edu	37	19	56220431	56220431	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	56220431	56220431	T	-	DEL	ENSG00000267865	ENST00000596293	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2611O12.8	Clone_based_vega_gene	ENSG00000267865				48	0	0	29	7	19.4444
FBN3	0	genome.wustl.edu	37	19	8196625	8196625	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	8196625	8196625	C	-	DEL	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	frame_shift_del	c.1803	p.L602fs	0.999	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				56	0	0	21	7	25
ZNF846	0	genome.wustl.edu	37	19	9875702	9875702	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	19	9875702	9875702	A	-	DEL	ZNF846	ENST00000587650	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.157	-	-	-	no_errors	ZNF846	HGNC	ENSG00000196605				117	0	0	78	10	11.3636
EIF5B	0	genome.wustl.edu	37	2	100011328	100011329	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	100011328	100011329	AG	-	DEL	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	frame_shift_del	c.3236_3237	p.K1080fs	1.000:1.000	superfamily_TIF_IF2_dom3	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				64	0	0	32	11	25.5814
TMEM87B	0	genome.wustl.edu	37	2	112839024	112839024	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	112839024	112839024	T	-	DEL	TMEM87B	ENST00000283206	human	ensembl	74_37	+1	known	frame_shift_del	c.767	p.L258fs	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	TMEM87B	HGNC	ENSG00000153214				232	1	0.429185	120	34	22.0779
ENSG00000231731	0	genome.wustl.edu	37	2	128263364	128263366	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	128263364	128263366	AAA	-	DEL	ENSG00000231731	ENST00000599001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.233:0.319:0.309	-	-	-	no_errors	AC010976.2	Clone_based_vega_gene	ENSG00000231731				55	0	0	49	13	20.9677
ZRANB3	0	genome.wustl.edu	37	2	135988440	135988440	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	135988440	135988440	T	-	DEL	ZRANB3	ENST00000264159	human	ensembl	74_37	-1	known	frame_shift_del	c.1597	p.R533fs	0.015	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988				94	0	0	63	17	21.25
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				211	0	0	49	63	56.25
MBD5	0	genome.wustl.edu	37	2	149226442	149226443	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	149226442	149226443	-	A	INS	MBD5	ENST00000407073	human	ensembl	74_37	+1	known	frame_shift_ins	c.930_931	p.P312fs	1.000:1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP_dom	-	no_errors	MBD5	HGNC	ENSG00000204406				116	0	0	75	27	26.4706
SCN9A	0	genome.wustl.edu	37	2	167144965	167144965	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	167144965	167144965	T	-	DEL	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	frame_shift_del	c.1299	p.E434fs	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				179	0	0	50	39	43.8202
CCDC173	0	genome.wustl.edu	37	2	170506881	170506882	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	170506881	170506882	-	T	INS	CCDC173	ENST00000447353	human	ensembl	74_37	-1	known	frame_shift_ins	c.1110_1109	p.N370fs	0.005:0.010	NULL	NULL	-	no_errors	CCDC173	HGNC	ENSG00000154479				40	0	0	15	5	25
UBR3	0	genome.wustl.edu	37	2	170806529	170806529	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	170806529	170806529	A	-	DEL	UBR3	ENST00000272793	human	ensembl	74_37	+1	known	frame_shift_del	c.3499	p.V1169fs	1.000	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357				184	0	0	106	8	7.01754
MYO3B	0	genome.wustl.edu	37	2	171073882	171073883	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	171073882	171073883	-	C	INS	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	frame_shift_ins	c.607_608	p.F205fs	0.995:0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				389	0	0	181	14	7.17949
CIR1	0	genome.wustl.edu	37	2	175213713	175213713	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	175213713	175213713	T	-	DEL	CIR1	ENST00000342016	human	ensembl	74_37	-1	known	frame_shift_del	c.865	p.I289fs	0.130	NULL	pfam_CIR_N_dom,superfamily_Znf_CCHC	-	no_errors	CIR1	HGNC	ENSG00000138433				80	0	0	34	16	32
CHRNA1	0	genome.wustl.edu	37	2	175622346	175622346	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	175622346	175622346	T	-	DEL	CHRNA1	ENST00000261007	human	ensembl	74_37	-1	known	frame_shift_del	c.367	p.I123fs	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435				103	0	0	39	17	30.3571
HOXD10	0	genome.wustl.edu	37	2	176981596	176981597	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	176981596	176981597	-	T	INS	HOXD10	ENST00000249501	human	ensembl	74_37	+1	known	frame_shift_ins	c.35_36	p.L14fs	1.000:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD10	HGNC	ENSG00000128710				247	0	0	90	37	29.1339
TTN-AS1	0	genome.wustl.edu	37	2	179392944	179392944	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	179392944	179392944	A	-	DEL	TTN-AS1	ENST00000592182	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				69	0	0	32	10	23.8095
ENSG00000271141	0	genome.wustl.edu	37	2	179481361	179481361	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	179481361	179481361	A	-	DEL	ENSG00000271141	ENST00000605334	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.925	-	-	-	no_errors	RP11-171I2.4	Clone_based_vega_gene	ENSG00000271141				100	1	0.990099	69	24	25.8065
SSFA2	0	genome.wustl.edu	37	2	182786778	182786778	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	182786778	182786778	T	-	DEL	SSFA2	ENST00000431877	human	ensembl	74_37	+1	known	frame_shift_del	c.3314	p.S1107fs	1.000	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434				202	0	0	73	42	36.5217
ZC3H15	0	genome.wustl.edu	37	2	187370510	187370512	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	187370510	187370512	ATG	-	DEL	ZC3H15	ENST00000337859	human	ensembl	74_37	+1	known	in_frame_del	c.908_910	p.D306in_frame_del	1.000:1.000:1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H15	HGNC	ENSG00000065548				72	0	0	43	10	18.8679
TMEFF2	0	genome.wustl.edu	37	2	192818525	192818525	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	192818525	192818525	T	-	DEL	TMEFF2	ENST00000272771	human	ensembl	74_37	-1	known	frame_shift_del	c.908	p.K303fs	1.000	NULL	pfam_Kazal_dom,smart_Kazal_dom,pfscan_EG-like_dom	-	no_errors	TMEFF2	HGNC	ENSG00000144339				81	0	0	60	26	30.2326
SUMO1	0	genome.wustl.edu	37	2	203096349	203096349	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	203096349	203096349	A	-	DEL	SUMO1	ENST00000409627	human	ensembl	74_37	-1	known	frame_shift_del	c.119	p.L40fs	0.011	NULL	NULL	-	no_errors	SUMO1	HGNC	ENSG00000116030				25	0	0	22	5	18.5185
APOB	0	genome.wustl.edu	37	2	21233671	21233672	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	21233671	21233672	-	G	INS	APOB	ENST00000233242	human	ensembl	74_37	-1	known	frame_shift_ins	c.6069_6068	p.I2024fs	0.000:0.022	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				191	0	0	97	43	30.7143
APOB	0	genome.wustl.edu	37	2	21238076	21238076	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	21238076	21238076	T	-	DEL	APOB	ENST00000233242	human	ensembl	74_37	-1	known	frame_shift_del	c.3565	p.M1189fs	0.001	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				170	0	0	109	8	6.83761
ABCA12	0	genome.wustl.edu	37	2	215843156	215843156	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	215843156	215843156	T	-	DEL	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	frame_shift_del	c.5012	p.N1671fs	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				47	0	0	22	12	35.2941
DNAJB2	0	genome.wustl.edu	37	2	220146725	220146725	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	220146725	220146725	C	-	DEL	DNAJB2	ENST00000336576	human	ensembl	74_37	+1	known	frame_shift_del	c.294	p.E100fs	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB2	HGNC	ENSG00000135924				131	0	0	39	10	20.4082
UGT1A3	0	genome.wustl.edu	37	2	234638283	234638283	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	234638283	234638283	T	-	DEL	UGT1A3	ENST00000482026	human	ensembl	74_37	+1	known	frame_shift_del	c.511	p.L173fs	0.996	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A3	HGNC	ENSG00000243135				328	1	0.303951	185	102	35.5401
LOC101927958	0	genome.wustl.edu	37	2	239164120	239164120	+	RNA	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	239164120	239164120	C	-	DEL	LOC101927958	ENST00000456601	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC096574.4	Clone_based_vega_gene	ENSG00000225057				18	0	0	22	7	24.1379
ANKMY1	0	genome.wustl.edu	37	2	241468685	241468685	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	241468685	241468685	A	-	DEL	ANKMY1	ENST00000272972	human	ensembl	74_37	-1	known	frame_shift_del	c.455	p.F152fs	0.879	NULL	pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504				79	0	0	49	6	10.9091
MYADML	0	genome.wustl.edu	37	2	33952811	33952811	+	RNA	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	33952811	33952811	C	-	DEL	MYADML	ENST00000474610	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.822	-	-	-	no_errors	MYADML	HGNC	ENSG00000239649				62	0	0	22	7	24.1379
PREPL	0	genome.wustl.edu	37	2	44566504	44566505	+	Splice_Site	INS	-	-	AG			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	44566504	44566505	-	AG	INS	PREPL	ENST00000260648	human	ensembl	74_37	-1	known	splice_site_ins	c.753-3_753-2	e6-2	0.982:0.088	-	-	-	no_errors	PREPL	HGNC	ENSG00000138078				49	0	0	34	7	17.0732
MSH6	0	genome.wustl.edu	37	2	48030639	48030640	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	48030639	48030640	-	C	INS	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	frame_shift_ins	c.3253_3254	p.F1088fs	0.001:0.003	pfam_DNA_mismatch_repair_MutS_C,superfamily_P-loop_NTPase,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				128	1	0.775194	67	21	23.8636
TIA1	0	genome.wustl.edu	37	2	70475534	70475535	+	Splice_Site	DEL	CA	CA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	70475534	70475535	CA	-	DEL	TIA1	ENST00000433529	human	ensembl	74_37	-1	known	splice_site_del	c.26+2_26+1	e1+2	1.000:1.000	-	-	-	no_errors	TIA1	HGNC	ENSG00000116001				109	0	0	24	16	40
IMMT	0	genome.wustl.edu	37	2	86385684	86385684	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	86385684	86385684	A	-	DEL	IMMT	ENST00000490238	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IMMT	HGNC	ENSG00000132305				19	0	0	7	8	53.3333
ASAP2	0	genome.wustl.edu	37	2	9528643	9528643	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	9528643	9528643	C	-	DEL	ASAP2	ENST00000281419	human	ensembl	74_37	+1	known	frame_shift_del	c.2351	p.P786fs	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693				77	0	0	32	10	23.8095
MAL	0	genome.wustl.edu	37	2	95691557	95691558	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	95691557	95691558	-	G	INS	MAL	ENST00000309988	human	ensembl	74_37	+1	known	frame_shift_ins	c.20_21	p.S10fs	1.000:0.998	NULL	pfam_Marvel,prints_MAL	-	no_errors	MAL	HGNC	ENSG00000172005				19	0	0	10	5	33.3333
ZAP70	0	genome.wustl.edu	37	2	98340769	98340769	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	98340769	98340769	C	-	DEL	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	frame_shift_del	c.270	p.D92fs	0.165	smart_SH2,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				32	0	0	14	6	30
TMEM131	0	genome.wustl.edu	37	2	98429194	98429195	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	98429194	98429195	-	G	INS	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	frame_shift_ins	c.1636_1635	p.K545fs	0.999:0.997	pfam_DUF3651_TMEM131	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				63	0	0	24	14	36.8421
INPP4A	0	genome.wustl.edu	37	2	99163123	99163123	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	99163123	99163123	A	-	DEL	INPP4A	ENST00000074304	human	ensembl	74_37	+1	known	frame_shift_del	c.1129	p.K378fs	1.000	NULL	superfamily_C2_dom	-	no_errors	INPP4A	HGNC	ENSG00000040933				91	0	0	51	5	8.92857
LIPT1	0	genome.wustl.edu	37	2	99778781	99778781	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	99778781	99778781	A	-	DEL	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	frame_shift_del	c.361	p.K123fs	0.994	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182				105	1	0.943396	83	30	26.5487
EIF5B	0	genome.wustl.edu	37	2	99977649	99977650	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	2	99977649	99977650	-	A	INS	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	frame_shift_ins	c.285_286	p.K98fs	0.928:0.998	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				110	1	0.900901	49	24	32.8767
DEFB128	0	genome.wustl.edu	37	20	168739	168740	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	168739	168740	-	T	INS	DEFB128	ENST00000334391	human	ensembl	74_37	-1	known	frame_shift_ins	c.70_69	p.C23fs	0.765:0.445	NULL	NULL	-	no_errors	DEFB128	HGNC	ENSG00000185982				282	0	0	163	69	29.7414
GINS1	0	genome.wustl.edu	37	20	25422397	25422397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	25422397	25422397	A	-	DEL	GINS1	ENST00000262460	human	ensembl	74_37	+1	known	frame_shift_del	c.507	p.N172fs	0.232	NULL	NULL	-	no_errors	GINS1	HGNC	ENSG00000101003				128	0	0	81	19	19
HM13	0	genome.wustl.edu	37	20	30142485	30142487	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	30142485	30142487	AAA	-	DEL	HM13	ENST00000474466	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.172:0.159:0.155	-	-	-	no_errors	HM13	HGNC	ENSG00000101294				37	0	0	7	6	46.1538
ACSS2	0	genome.wustl.edu	37	20	33501910	33501911	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	33501910	33501911	-	G	INS	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	frame_shift_ins	c.655_656	p.E221fs	1.000:1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069				87	0	0	20	18	47.3684
DDX27	0	genome.wustl.edu	37	20	47858504	47858504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	47858504	47858504	A	-	DEL	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	frame_shift_del	c.2065	p.K691fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				168	1	0.591716	83	30	26.5487
SYCP2	0	genome.wustl.edu	37	20	58452519	58452519	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	58452519	58452519	T	-	DEL	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_del	c.3071	p.N1024fs	1.000	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				75	0	0	45	13	22.4138
CDH26	0	genome.wustl.edu	37	20	58587784	58587785	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	58587784	58587785	AA	-	DEL	CDH26	ENST00000348616	human	ensembl	74_37	+1	known	frame_shift_del	c.2498_2499	p.*833fs	0.000:0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				79	0	0	35	12	25.5319
SS18L1	0	genome.wustl.edu	37	20	60740566	60740566	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	20	60740566	60740566	G	-	DEL	SS18L1	ENST00000370848	human	ensembl	74_37	+1	known	frame_shift_del	c.921	p.G309fs	0.999	NULL	pfam_SS18_fam	-	no_errors	SS18L1	HGNC	ENSG00000184402				47	0	0	14	3	17.6471
SCAF4	0	genome.wustl.edu	37	21	33074655	33074655	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	33074655	33074655	T	-	DEL	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	frame_shift_del	c.359	p.N120fs	1.000	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF4	HGNC	ENSG00000156304				86	0	0	62	30	32.6087
C21orf59	0	genome.wustl.edu	37	21	33982209	33982209	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	33982209	33982209	T	-	DEL	C21orf59	ENST00000290155	human	ensembl	74_37	-1	known	frame_shift_del	c.246	p.K82fs	0.940	NULL	pfam_DUF2870	-	no_errors	C21orf59	HGNC	ENSG00000159079				69	0	0	40	17	29.8246
TTC3	0	genome.wustl.edu	37	21	38460480	38460480	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	38460480	38460480	T	-	DEL	TTC3	ENST00000484047	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.813	-	-	-	no_errors	TTC3	HGNC	ENSG00000182670				21	0	0	16	4	20
PKNOX1	0	genome.wustl.edu	37	21	44448885	44448885	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	44448885	44448885	A	-	DEL	PKNOX1	ENST00000291547	human	ensembl	74_37	+1	known	frame_shift_del	c.1000	p.T336fs	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PKNOX1	HGNC	ENSG00000160199				328	1	0.303951	142	54	27.551
AIRE	0	genome.wustl.edu	37	21	45710773	45710773	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	45710773	45710773	G	-	DEL	AIRE	ENST00000355347	human	ensembl	74_37	+1	known	frame_shift_del	c.84	p.G30fs	0.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	AIRE	HGNC	ENSG00000160224				223	1	0.446429	79	33	29.4643
UBE2G2	0	genome.wustl.edu	37	21	46191156	46191157	+	RNA	DEL	AA	AA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	46191156	46191157	AA	-	DEL	UBE2G2	ENST00000477954	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	UBE2G2	HGNC	ENSG00000184787				12	0	0	18	3	14.2857
ADARB1	0	genome.wustl.edu	37	21	46642058	46642058	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	21	46642058	46642058	G	-	DEL	ADARB1	ENST00000360697	human	ensembl	74_37	+1	known	frame_shift_del	c.2172	p.A726fs	0.998	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,superfamily_Cytokine_IL1-like,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381				69	0	0	35	8	18.6047
HIC2	0	genome.wustl.edu	37	22	21800189	21800191	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	21800189	21800191	GAA	-	DEL	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	in_frame_del	c.1005_1007	p.K337in_frame_del	0.449:0.904:0.995	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				51	0	0	24	11	31.4286
TPST2	0	genome.wustl.edu	37	22	26932299	26932299	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	26932299	26932299	G	-	DEL	TPST2	ENST00000338754	human	ensembl	74_37	-1	known	frame_shift_del	c.996	p.N333fs	0.999	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	TPST2	HGNC	ENSG00000128294				118	0	0	33	11	25
ZNRF3	0	genome.wustl.edu	37	22	29446611	29446611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	29446611	29446611	A	-	DEL	ZNRF3	ENST00000544604	human	ensembl	74_37	+1	known	frame_shift_del	c.2442	p.P815fs	0.916	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF3	HGNC	ENSG00000183579				31	0	0	17	5	22.7273
RASL10A	0	genome.wustl.edu	37	22	29709664	29709664	+	RNA	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	29709664	29709664	C	-	DEL	RASL10A	ENST00000474590	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	RASL10A	HGNC	ENSG00000100276				9	0	0	11	4	26.6667
DDX17	0	genome.wustl.edu	37	22	38897211	38897211	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	38897211	38897211	T	-	DEL	DDX17	ENST00000396821	human	ensembl	74_37	-1	known	frame_shift_del	c.362	p.K121fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201				80	0	0	36	23	38.9831
TOB2	0	genome.wustl.edu	37	22	41832766	41832766	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	22	41832766	41832766	C	-	DEL	TOB2	ENST00000327492	human	ensembl	74_37	-1	known	frame_shift_del	c.584	p.G195fs	0.969	NULL	pfam_Anti_prolifrtn,pfam_Ataxin-2_C,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	TOB2	HGNC	ENSG00000183864				73	0	0	19	6	24
SENP7	0	genome.wustl.edu	37	3	101085608	101085608	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	101085608	101085608	T	-	DEL	SENP7	ENST00000394095	human	ensembl	74_37	-1	known	frame_shift_del	c.984	p.K328fs	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468				56	0	0	58	15	20.5479
C3orf17	0	genome.wustl.edu	37	3	112730081	112730081	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	112730081	112730081	T	-	DEL	C3orf17	ENST00000314400	human	ensembl	74_37	-1	known	frame_shift_del	c.724	p.M242fs	0.005	NULL	NULL	-	no_errors	C3orf17	HGNC	ENSG00000163608				150	0	0	82	29	26.1261
ADCY5	0	genome.wustl.edu	37	3	123167214	123167215	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	123167214	123167215	-	C	INS	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	frame_shift_ins	c.179_178	p.A60fs	1.000:0.997	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				16	0	0	2	4	66.6667
EEFSEC	0	genome.wustl.edu	37	3	128060202	128060203	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	128060202	128060203	-	C	INS	EEFSEC	ENST00000254730	human	ensembl	74_37	+1	known	frame_shift_ins	c.913_914	p.E307fs	1.000:1.000	superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_EF_GTP-bd_dom	-	no_errors	EEFSEC	HGNC	ENSG00000132394				145	0	0	48	20	29.4118
SRPRB	0	genome.wustl.edu	37	3	133524737	133524738	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	133524737	133524738	-	G	INS	SRPRB	ENST00000466490	human	ensembl	74_37	+1	known	frame_shift_ins	c.45_46	p.T17fs	0.001:0.541	NULL	pfam_SRP_receptor_beta_su,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase	-	no_errors	SRPRB	HGNC	ENSG00000144867				140	0	0	45	18	28.5714
DZIP1L	0	genome.wustl.edu	37	3	137787004	137787004	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	137787004	137787004	C	-	DEL	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	frame_shift_del	c.1821	p.M610fs	0.803	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163				75	0	0	17	15	46.875
PLSCR1	0	genome.wustl.edu	37	3	146234963	146234964	+	RNA	DEL	AA	AA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	146234963	146234964	AA	-	DEL	PLSCR1	ENST00000484560	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.163:0.236	-	-	-	no_errors	PLSCR1	HGNC	ENSG00000188313				60	0	0	30	10	25
IGSF10	0	genome.wustl.edu	37	3	151166172	151166172	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	151166172	151166172	T	-	DEL	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	frame_shift_del	c.1597	p.S533fs	0.228	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				270	0	0	139	68	32.8502
CAPN7	0	genome.wustl.edu	37	3	15283047	15283047	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	15283047	15283047	G	-	DEL	CAPN7	ENST00000253693	human	ensembl	74_37	+1	known	frame_shift_del	c.1740	p.G582fs	1.000	superfamily_Calpain_domain_III	pfam_Peptidase_C2_calpain_cat,pfam_MIT,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_MIT,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN7	HGNC	ENSG00000131375				100	0	0	56	21	27.2727
ARL14	0	genome.wustl.edu	37	3	160395474	160395474	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	160395474	160395474	A	-	DEL	ARL14	ENST00000320767	human	ensembl	74_37	+1	known	frame_shift_del	c.340	p.N115fs	0.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL14	HGNC	ENSG00000179674				105	0	0	71	18	20.2247
SERPINI1	0	genome.wustl.edu	37	3	167507159	167507159	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	167507159	167507159	A	-	DEL	SERPINI1	ENST00000295777	human	ensembl	74_37	+1	known	frame_shift_del	c.243	p.N83fs	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINI1	HGNC	ENSG00000163536				131	0	0	75	18	19.3548
PRKCI	0	genome.wustl.edu	37	3	169998164	169998165	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	169998164	169998165	-	A	INS	PRKCI	ENST00000295797	human	ensembl	74_37	+1	known	frame_shift_ins	c.855_856	p.E287fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_PKC_zeta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCI	HGNC	ENSG00000163558				79	0	0	52	17	24.6377
EIF4G1	0	genome.wustl.edu	37	3	184045412	184045412	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	184045412	184045412	A	-	DEL	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	frame_shift_del	c.3721	p.K1241fs	0.974	superfamily_ARM-type_fold	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				299	0	0	159	10	5.91716
OPA1-AS1	0	genome.wustl.edu	37	3	193336469	193336469	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	193336469	193336469	T	-	DEL	OPA1-AS1	ENST00000433105	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OPA1-AS1	HGNC	ENSG00000224855				12	0	0	6	4	40
LRRC15	0	genome.wustl.edu	37	3	194080916	194080917	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	194080916	194080917	GG	-	DEL	LRRC15	ENST00000439944	human	ensembl	74_37	-1	known	frame_shift_del	c.875_874	p.P292fs	0.992:0.992	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC15	HGNC	ENSG00000172061				162	0	0	69	21	23.3333
TRNT1	0	genome.wustl.edu	37	3	3188232	3188232	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	3188232	3188232	A	-	DEL	TRNT1	ENST00000251607	human	ensembl	74_37	+1	known	frame_shift_del	c.727	p.I245fs	1.000	NULL	pfam_PolA_pol_head_dom	-	no_errors	TRNT1	HGNC	ENSG00000072756				121	0	0	50	28	35.8974
CLASP2	0	genome.wustl.edu	37	3	33602361	33602361	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	33602361	33602361	T	-	DEL	CLASP2	ENST00000399362	human	ensembl	74_37	-1	known	frame_shift_del	c.2890	p.M964fs	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539				248	2	0.8	122	42	25.6098
ANO10	0	genome.wustl.edu	37	3	43647212	43647213	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	43647212	43647213	-	T	INS	ANO10	ENST00000292246	human	ensembl	74_37	-1	known	frame_shift_ins	c.133_132	p.D44fs	1.000:1.000	NULL	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746				98	0	0	41	10	19.6078
PTPN23	0	genome.wustl.edu	37	3	47454481	47454482	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	47454481	47454482	-	T	INS	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	frame_shift_ins	c.4717_4718	p.P1573fs	0.985:0.996	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				44	0	0	16	8	33.3333
ATRIP	0	genome.wustl.edu	37	3	48501288	48501288	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	48501288	48501288	C	-	DEL	ATRIP	ENST00000320211	human	ensembl	74_37	+1	known	frame_shift_del	c.1028	p.L345fs	0.820	NULL	NULL	-	no_errors	ATRIP	HGNC	ENSG00000164053				397	0	0	133	41	23.5632
FAM212A	0	genome.wustl.edu	37	3	49842023	49842023	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	49842023	49842023	C	-	DEL	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	frame_shift_del	c.467	p.P157fs	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				115	0	0	50	20	28.5714
DOCK3	0	genome.wustl.edu	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	51417604	51417604	C	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549	p.P1852fs	0.115	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				85	0	0	27	10	27.027
STAB1	0	genome.wustl.edu	37	3	52546401	52546401	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	52546401	52546401	C	-	DEL	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	frame_shift_del	c.2928	p.P978fs	0.997	superfamily_FAS1_domain,smart_EG-like_dom,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				257	0	0	87	41	32.0312
ERC2	0	genome.wustl.edu	37	3	55768913	55768913	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	55768913	55768913	T	-	DEL	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	frame_shift_del	c.2598	p.D867fs	0.998	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672				31	0	0	9	7	43.75
APPL1	0	genome.wustl.edu	37	3	57294708	57294708	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	57294708	57294708	T	-	DEL	APPL1	ENST00000288266	human	ensembl	74_37	+1	known	frame_shift_del	c.1748	p.F584fs	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom	-	no_errors	APPL1	HGNC	ENSG00000157500				342	0	0	165	47	22.1698
ADAMTS9-AS1	0	genome.wustl.edu	37	3	64554386	64554387	+	RNA	DEL	AA	AA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	64554386	64554387	AA	-	DEL	ADAMTS9-AS1	ENST00000492209	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors	ADAMTS9-AS1	HGNC	ENSG00000241158				10	0	0	5	5	50
EPHA3	0	genome.wustl.edu	37	3	89499363	89499363	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	3	89499363	89499363	C	-	DEL	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	frame_shift_del	c.2533	p.M847fs	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				101	0	0	35	9	20.4545
TBCK	0	genome.wustl.edu	37	4	107156505	107156505	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	107156505	107156505	T	-	DEL	TBCK	ENST00000273980	human	ensembl	74_37	-1	known	frame_shift_del	c.1370	p.N457fs	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rhodanese-like_dom,superfamily_Kinase-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Rab-GTPase-TBC_dom,smart_Rhodanese-like_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Prot_kinase_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBCK	HGNC	ENSG00000145348				39	0	0	21	6	22.2222
LARP7	0	genome.wustl.edu	37	4	113570754	113570754	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	113570754	113570754	A	-	DEL	LARP7	ENST00000324052	human	ensembl	74_37	+1	known	frame_shift_del	c.1206	p.T405fs	1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720				34	0	0	18	11	37.931
LARP7	0	genome.wustl.edu	37	4	113578483	113578483	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	113578483	113578483	A	-	DEL	LARP7	ENST00000324052	human	ensembl	74_37	+1	known	frame_shift_del	c.1749	p.*583fs	1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720				33	0	0	19	9	32.1429
ADAD1	0	genome.wustl.edu	37	4	123302211	123302211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	123302211	123302211	A	-	DEL	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	frame_shift_del	c.237	p.I82fs	1.000	NULL	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113				141	0	0	54	13	19.403
PCDH18	0	genome.wustl.edu	37	4	138452697	138452697	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	138452697	138452697	A	-	DEL	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	frame_shift_del	c.546	p.F182fs	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				90	0	0	44	30	40.5405
PROM1	0	genome.wustl.edu	37	4	15995680	15995680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	15995680	15995680	T	-	DEL	PROM1	ENST00000447510	human	ensembl	74_37	-1	known	frame_shift_del	c.1697	p.N566fs	0.415	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062				170	1	0.584795	88	12	12
TMA16	0	genome.wustl.edu	37	4	164435265	164435265	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	164435265	164435265	A	-	DEL	TMA16	ENST00000358572	human	ensembl	74_37	+1	known	frame_shift_del	c.194	p.K67fs	0.343	pfam_Tma16	pfam_Tma16	-	no_errors	TMA16	HGNC	ENSG00000198498				119	0	0	57	12	17.3913
WDR17	0	genome.wustl.edu	37	4	177050003	177050004	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	177050003	177050004	-	A	INS	WDR17	ENST00000280190	human	ensembl	74_37	+1	known	frame_shift_ins	c.977_978	p.F329fs	0.927:0.905	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627				60	0	0	36	11	23.4043
SORBS2	0	genome.wustl.edu	37	4	186544439	186544439	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	186544439	186544439	T	-	DEL	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	frame_shift_del	c.2132	p.N711fs	0.203	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556				354	0	0	154	78	33.6207
SORBS2	0	genome.wustl.edu	37	4	186544879	186544879	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	186544879	186544879	G	-	DEL	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	frame_shift_del	c.1692	p.A565fs	0.002	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556				126	0	0	58	29	33.3333
SORBS2	0	genome.wustl.edu	37	4	186545480	186545480	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	186545480	186545480	T	-	DEL	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	frame_shift_del	c.1091	p.N364fs	0.996	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556				125	0	0	69	29	29.5918
WHSC1	0	genome.wustl.edu	37	4	1980559	1980559	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	1980559	1980559	C	-	DEL	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	frame_shift_del	c.4021	p.P1343fs	0.982	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				50	0	0	28	6	17.6471
EVC	0	genome.wustl.edu	37	4	5746947	5746947	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	5746947	5746947	A	-	DEL	EVC	ENST00000264956	human	ensembl	74_37	+1	known	frame_shift_del	c.818	p.K274fs	1.000	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				124	0	0	46	20	30.303
REST	0	genome.wustl.edu	37	4	57796314	57796315	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	57796314	57796315	-	A	INS	REST	ENST00000309042	human	ensembl	74_37	+1	known	frame_shift_ins	c.1290_1291	p.R432fs	1.000:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093				128	0	0	73	31	29.8077
POLR2B	0	genome.wustl.edu	37	4	57871589	57871589	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	57871589	57871589	A	-	DEL	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	frame_shift_del	c.1078	p.A362fs	1.000	pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				211	0	0	95	34	26.3566
AFM	0	genome.wustl.edu	37	4	74347531	74347532	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	74347531	74347532	-	T	INS	AFM	ENST00000226355	human	ensembl	74_37	+1	known	frame_shift_ins	c.39_40	p.L15fs	0.970:0.970	pirsf_Serum_albumin/AFP	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_ALB/AFP/VDB,prints_Alpha-fetoprotein	-	no_errors	AFM	HGNC	ENSG00000079557				71	0	0	33	15	31.25
C4orf26	0	genome.wustl.edu	37	4	76489701	76489701	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	76489701	76489701	A	-	DEL	C4orf26	ENST00000435974	human	ensembl	74_37	+1	putative	frame_shift_del	c.489	p.K165fs	0.001	NULL	NULL	-	no_errors	C4orf26	HGNC	ENSG00000174792				113	0	0	91	7	7.14286
SDAD1	0	genome.wustl.edu	37	4	76891521	76891521	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	76891521	76891521	T	-	DEL	SDAD1	ENST00000356260	human	ensembl	74_37	-1	known	frame_shift_del	c.824	p.K275fs	1.000	superfamily_ARM-type_fold	pfam_SDA1_dom,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold	-	no_errors	SDAD1	HGNC	ENSG00000198301				115	0	0	39	14	26.4151
STPG2	0	genome.wustl.edu	37	4	99027105	99027105	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	4	99027105	99027105	T	-	DEL	STPG2	ENST00000295268	human	ensembl	74_37	-1	known	frame_shift_del	c.611	p.K204fs	1.000	NULL	NULL	-	no_errors	STPG2	HGNC	ENSG00000163116				22	0	0	6	5	45.4545
ZNF608	0	genome.wustl.edu	37	5	123984684	123984684	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	123984684	123984684	C	-	DEL	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	frame_shift_del	c.1393	p.A465fs	0.918	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				236	0	0	90	34	27.4194
NME5	0	genome.wustl.edu	37	5	137451297	137451297	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	137451297	137451297	T	-	DEL	NME5	ENST00000514481	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NME5	HGNC	ENSG00000112981				24	0	0	15	8	34.7826
PCDHB5	0	genome.wustl.edu	37	5	140515740	140515740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	140515740	140515740	T	-	DEL	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	frame_shift_del	c.724	p.L243fs	0.995	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				651	0	0	264	105	28.4553
RNF145	0	genome.wustl.edu	37	5	158630630	158630630	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	158630630	158630630	T	-	DEL	RNF145	ENST00000518802	human	ensembl	74_37	-1	known	frame_shift_del	c.86	p.N29fs	0.002	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860				82	0	0	50	6	10.7143
FOXI1	0	genome.wustl.edu	37	5	169533111	169533111	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	169533111	169533111	G	-	DEL	FOXI1	ENST00000306268	human	ensembl	74_37	+1	known	frame_shift_del	c.150	p.G52fs	0.054	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXI1	HGNC	ENSG00000168269				44	0	0	21	12	36.3636
CDHR2	0	genome.wustl.edu	37	5	176004429	176004429	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	176004429	176004429	G	-	DEL	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	frame_shift_del	c.1224	p.G410fs	0.117	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				32	0	0	7	4	36.3636
SPEF2	0	genome.wustl.edu	37	5	35705894	35705894	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	35705894	35705894	A	-	DEL	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	frame_shift_del	c.2649	p.K886fs	0.129	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				23	0	0	27	13	32.5
IL7R	0	genome.wustl.edu	37	5	35867541	35867541	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	35867541	35867541	A	-	DEL	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	frame_shift_del	c.355	p.I121fs	0.165	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685				115	0	0	61	21	25.6098
C5orf42	0	genome.wustl.edu	37	5	37167150	37167150	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	37167150	37167150	T	-	DEL	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	frame_shift_del	c.7399	p.R2467fs	1.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				80	0	0	42	13	23.6364
C9	0	genome.wustl.edu	37	5	39289038	39289039	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	39289038	39289039	TA	-	DEL	C9	ENST00000263408	human	ensembl	74_37	-1	known	frame_shift_del	c.1432_1431	p.Y477fs	0.746:0.443	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600				102	0	0	55	24	30.3797
ERBB2IP	0	genome.wustl.edu	37	5	65374370	65374370	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	65374370	65374370	A	-	DEL	ERBB2IP	ENST00000503913	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ERBB2IP	HGNC	ENSG00000112851				76	0	0	38	13	25.4902
PAPD4	0	genome.wustl.edu	37	5	78938656	78938657	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	78938656	78938657	-	T	INS	PAPD4	ENST00000296783	human	ensembl	74_37	+1	known	frame_shift_ins	c.674_675	p.Q228fs	0.846:0.988	NULL	pfam_PAP_assoc	-	no_errors	PAPD4	HGNC	ENSG00000164329				49	0	0	28	9	24.3243
COX7C	0	genome.wustl.edu	37	5	85913794	85913794	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	5	85913794	85913794	A	-	DEL	COX7C	ENST00000505430	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COX7C	HGNC	ENSG00000127184				33	0	0	8	5	38.4615
GRIK2	0	genome.wustl.edu	37	6	102503432	102503432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	102503432	102503432	A	-	DEL	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	frame_shift_del	c.2539	p.N849fs	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				213	0	0	88	35	28.4553
AK9	0	genome.wustl.edu	37	6	109850222	109850222	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	109850222	109850222	T	-	DEL	AK9	ENST00000424296	human	ensembl	74_37	-1	known	frame_shift_del	c.3625	p.R1209fs	0.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085				93	0	0	37	12	24.4898
ADTRP	0	genome.wustl.edu	37	6	11714640	11714640	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	11714640	11714640	A	-	DEL	ADTRP	ENST00000512139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADTRP	HGNC	ENSG00000111863				43	0	0	15	15	50
CEP85L	0	genome.wustl.edu	37	6	118803034	118803034	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	118803034	118803034	T	-	DEL	CEP85L	ENST00000368488	human	ensembl	74_37	-1	known	frame_shift_del	c.1662	p.K554fs	0.075	NULL	NULL	-	no_errors	CEP85L	HGNC	ENSG00000111860				24	0	0	13	3	18.75
KIAA0408	0	genome.wustl.edu	37	6	127771252	127771252	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	127771252	127771252	T	-	DEL	KIAA0408	ENST00000483725	human	ensembl	74_37	-1	novel	frame_shift_del	c.381	p.K127fs	0.001	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367				218	0	0	106	41	27.8912
ENSG00000227678	0	genome.wustl.edu	37	6	130454856	130454856	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	130454856	130454856	T	-	DEL	ENSG00000227678	ENST00000415964	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.125	-	-	-	no_errors	RP11-73O6.3	Clone_based_vega_gene	ENSG00000227678				21	0	0	11	17	60.7143
FBXO5	0	genome.wustl.edu	37	6	153292227	153292227	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	153292227	153292227	T	-	DEL	FBXO5	ENST00000477822	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FBXO5	HGNC	ENSG00000112029				18	0	0	15	9	37.5
ENSG00000235381	0	genome.wustl.edu	37	6	155575539	155575539	+	RNA	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	155575539	155575539	C	-	DEL	ENSG00000235381	ENST00000435295	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-477D19.2	Clone_based_vega_gene	ENSG00000235381				64	0	0	35	11	23.913
SYNJ2	0	genome.wustl.edu	37	6	158508009	158508009	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	158508009	158508009	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.3331	p.P1113fs	1.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				107	0	0	43	9	17.3077
TULP4	0	genome.wustl.edu	37	6	158923752	158923753	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	158923752	158923753	-	G	INS	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	frame_shift_ins	c.3057_3058	p.V1021fs	0.001:0.001	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				30	0	0	9	14	60.8696
FGFR1OP	0	genome.wustl.edu	37	6	167438458	167438458	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	167438458	167438458	T	-	DEL	FGFR1OP	ENST00000496181	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.043	-	-	-	no_errors	FGFR1OP	HGNC	ENSG00000213066				31	0	0	22	8	26.6667
PHF10	0	genome.wustl.edu	37	6	170104148	170104148	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	170104148	170104148	G	-	DEL	PHF10	ENST00000339209	human	ensembl	74_37	-1	known	frame_shift_del	c.1448	p.P483fs	1.000	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF10	HGNC	ENSG00000130024				100	0	0	30	13	30.2326
RBM24	0	genome.wustl.edu	37	6	17292449	17292450	+	RNA	DEL	AA	AA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	17292449	17292450	AA	-	DEL	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.915:0.719	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				40	0	0	27	12	30.7692
KIF13A	0	genome.wustl.edu	37	6	17837127	17837128	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	17837127	17837128	CT	-	DEL	KIF13A	ENST00000259711	human	ensembl	74_37	-1	known	frame_shift_del	c.1137_1136	p.E379fs	1.000:1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13A	HGNC	ENSG00000137177				438	0	0	170	84	33.0709
PGBD1	0	genome.wustl.edu	37	6	28254890	28254890	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	28254890	28254890	A	-	DEL	PGBD1	ENST00000259883	human	ensembl	74_37	+1	known	frame_shift_del	c.587	p.N198fs	0.544	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,pfscan_SRCR,pfscan_Tscrpt_reg_SCAN	-	no_errors	PGBD1	HGNC	ENSG00000137338				123	0	0	39	22	36.0656
OR11A1	0	genome.wustl.edu	37	6	29394884	29394884	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	29394884	29394884	A	-	DEL	OR11A1	ENST00000377147	human	ensembl	74_37	-1	known	frame_shift_del	c.535	p.Y179fs	0.978	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11A1	HGNC	ENSG00000204694				51	0	0	17	11	39.2857
HLA-A	0	genome.wustl.edu	37	6	29911900	29911900	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	29911900	29911900	C	-	DEL	HLA-A	ENST00000376806	human	ensembl	74_37	+1	known	frame_shift_del	c.621	p.K210fs	0.000	pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-A	HGNC	ENSG00000206503				514	0	0	156	46	22.7723
HLA-C	0	genome.wustl.edu	37	6	31238246	31238247	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	31238246	31238247	GT	-	DEL	HLA-C	ENST00000383329	human	ensembl	74_37	-1	known	frame_shift_del	c.636_635	p.H212fs	0.014:0.013	pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-C	HGNC	ENSG00000204525				224	0	0	76	42	35.5932
HLA-C	0	genome.wustl.edu	37	6	31238875	31238875	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	31238875	31238875	G	-	DEL	HLA-C	ENST00000383329	human	ensembl	74_37	-1	known	frame_shift_del	c.594	p.N198fs	0.663	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-C	HGNC	ENSG00000204525				184	0	0	66	4	5.71429
HLA-B	0	genome.wustl.edu	37	6	31323353	31323356	+	Frame_Shift_Del	DEL	GTGT	GTGT	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GTGT	GTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	31323353	31323356	GTGT	-	DEL	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	frame_shift_del	c.636_633	p.H212fs	0.000:0.000:0.001:0.001	pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-B	HGNC	ENSG00000234745				332	0	0	124	37	22.9814
LSM2	0	genome.wustl.edu	37	6	31765402	31765402	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	31765402	31765402	A	-	DEL	LSM2	ENST00000470083	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LSM2	HGNC	ENSG00000204392				45	0	0	15	15	50
EHMT2	0	genome.wustl.edu	37	6	31864887	31864887	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	31864887	31864887	C	-	DEL	EHMT2	ENST00000395728	human	ensembl	74_37	-1	known	frame_shift_del	c.93	p.H33fs	0.001	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371				19	0	0	19	8	29.6296
HLA-DQA2	0	genome.wustl.edu	37	6	32709238	32709239	+	In_Frame_Ins	INS	-	-	CTG			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	32709238	32709239	-	CTG	INS	HLA-DQA2	ENST00000374940	human	ensembl	74_37	+1	known	in_frame_ins	c.18_19	p.9in_frame_insL	0.160:0.173	NULL	pfam_MHC_II_a_N,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DQA2	HGNC	ENSG00000237541				56	0	0	14	5	26.3158
C6orf89	0	genome.wustl.edu	37	6	36867370	36867371	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	36867370	36867371	-	C	INS	C6orf89	ENST00000355190	human	ensembl	74_37	+1	known	frame_shift_ins	c.171_172	p.Q60fs	0.997:0.991	NULL	NULL	-	no_errors	C6orf89	HGNC	ENSG00000198663				149	0	0	69	14	16.8675
PTCRA	0	genome.wustl.edu	37	6	42890866	42890866	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	42890866	42890866	C	-	DEL	PTCRA	ENST00000304672	human	ensembl	74_37	+1	known	frame_shift_del	c.160	p.P55fs	0.091	NULL	NULL	-	no_errors	PTCRA	HGNC	ENSG00000171611				210	0	0	75	34	31.1927
RHAG	0	genome.wustl.edu	37	6	49586892	49586892	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	49586892	49586892	T	-	DEL	RHAG	ENST00000371175	human	ensembl	74_37	-1	known	frame_shift_del	c.341	p.N114fs	0.640	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHAG	HGNC	ENSG00000112077				52	0	0	41	22	34.9206
DEFB113	0	genome.wustl.edu	37	6	49936565	49936566	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	49936565	49936566	-	T	INS	DEFB113	ENST00000398718	human	ensembl	74_37	-1	known	frame_shift_ins	c.74_73	p.T25fs	0.000:0.001	NULL	NULL	-	no_errors	DEFB113	HGNC	ENSG00000214642				41	0	0	26	10	27.7778
DST	0	genome.wustl.edu	37	6	56401586	56401587	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	56401586	56401587	GA	-	DEL	DST	ENST00000370754	human	ensembl	74_37	-1	known	frame_shift_del	c.16668_16667	p.L5556fs	0.975:1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				254	0	0	97	26	21.1382
BMP6	0	genome.wustl.edu	37	6	7862547	7862547	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	7862547	7862547	C	-	DEL	BMP6	ENST00000283147	human	ensembl	74_37	+1	known	frame_shift_del	c.1020	p.R342fs	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162				260	0	0	96	31	24.4094
MDN1	0	genome.wustl.edu	37	6	90415853	90415853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	90415853	90415853	A	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.8073	p.F2691fs	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				109	0	0	41	10	19.6078
PNISR	0	genome.wustl.edu	37	6	99848584	99848584	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	99848584	99848584	T	-	DEL	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	frame_shift_del	c.2250	p.K750fs	1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				227	0	0	160	34	17.5258
PNISR	0	genome.wustl.edu	37	6	99848834	99848834	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	99848834	99848834	T	-	DEL	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	frame_shift_del	c.2000	p.K667fs	1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				67	0	0	30	15	33.3333
PNISR	0	genome.wustl.edu	37	6	99850616	99850617	+	RNA	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	6	99850616	99850617	-	A	INS	PNISR	ENST00000460600	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.971:0.972	-	-	-	no_errors	PNISR	HGNC	ENSG00000132424				134	0	0	67	29	30.2083
GIGYF1	0	genome.wustl.edu	37	7	100285169	100285170	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	100285169	100285170	-	G	INS	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	frame_shift_ins	c.332_331	p.L111fs	0.003:0.025	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830				65	0	0	37	6	13.9535
NAPEPLD	0	genome.wustl.edu	37	7	102760123	102760123	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	102760123	102760123	A	-	DEL	NAPEPLD	ENST00000455523	human	ensembl	74_37	-1	known	frame_shift_del	c.1061	p.F354fs	1.000	NULL	NULL	-	no_errors	NAPEPLD	HGNC	ENSG00000161048				155	0	0	58	24	29.2683
SLC26A5	0	genome.wustl.edu	37	7	103061308	103061308	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	103061308	103061308	T	-	DEL	SLC26A5	ENST00000306312	human	ensembl	74_37	-1	known	frame_shift_del	c.169	p.I57fs	1.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A5	HGNC	ENSG00000170615				125	0	0	55	25	31.25
PIK3CG	0	genome.wustl.edu	37	7	106508995	106508995	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	106508995	106508995	C	-	DEL	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	frame_shift_del	c.989	p.T330fs	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				189	0	0	68	21	23.5955
LAMB4	0	genome.wustl.edu	37	7	107664504	107664505	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	107664504	107664505	-	T	INS	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	frame_shift_ins	c.5266_5265	p.Y1755fs	0.057:0.069	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				71	0	0	34	17	33.3333
LAMB4	0	genome.wustl.edu	37	7	107746988	107746988	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	107746988	107746988	A	-	DEL	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	frame_shift_del	c.621	p.F207fs	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				28	0	0	23	6	20.6897
GPR37	0	genome.wustl.edu	37	7	124404490	124404490	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	124404490	124404490	A	-	DEL	GPR37	ENST00000303921	human	ensembl	74_37	-1	known	frame_shift_del	c.541	p.Y181fs	0.998	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37	HGNC	ENSG00000170775				242	0	0	66	24	26.6667
KIAA1549	0	genome.wustl.edu	37	7	138603524	138603524	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	138603524	138603524	A	-	DEL	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	frame_shift_del	c.848	p.L283fs	0.001	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				64	0	0	41	26	38.806
ETV1	0	genome.wustl.edu	37	7	13975473	13975473	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	13975473	13975473	G	-	DEL	ETV1	ENST00000405218	human	ensembl	74_37	-1	known	frame_shift_del	c.414	p.T139fs	0.466	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV1	HGNC	ENSG00000006468				157	1	0.632911	68	28	29.1667
KMT2C	0	genome.wustl.edu	37	7	151845524	151845524	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	151845524	151845524	A	-	DEL	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_del	c.13659	p.F4553fs	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				207	1	0.480769	102	54	34.6154
KMT2C	0	genome.wustl.edu	37	7	152012386	152012386	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	152012386	152012386	T	-	DEL	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_del	c.427	p.S143fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				146	0	0	70	28	28.5714
SKAP2	0	genome.wustl.edu	37	7	26904108	26904108	+	RNA	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	26904108	26904108	G	-	DEL	SKAP2	ENST00000487720	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SKAP2	HGNC	ENSG00000005020				30	0	0	20	4	16.6667
GPR141	0	genome.wustl.edu	37	7	37780555	37780555	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	37780555	37780555	T	-	DEL	GPR141	ENST00000334425	human	ensembl	74_37	+1	known	frame_shift_del	c.560	p.F188fs	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR141	HGNC	ENSG00000187037				173	0	0	91	42	31.5789
C7orf57	0	genome.wustl.edu	37	7	48086205	48086205	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	48086205	48086205	A	-	DEL	C7orf57	ENST00000348904	human	ensembl	74_37	+1	known	frame_shift_del	c.499	p.K169fs	1.000	NULL	NULL	-	no_errors	C7orf57	HGNC	ENSG00000164746				44	0	0	13	3	18.75
ABCA13	0	genome.wustl.edu	37	7	48313347	48313347	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	48313347	48313347	T	-	DEL	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	frame_shift_del	c.4084	p.L1363fs	0.047	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				40	0	0	13	4	23.5294
ABCA13	0	genome.wustl.edu	37	7	48313595	48313595	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	48313595	48313595	A	-	DEL	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	frame_shift_del	c.4332	p.K1446fs	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				91	0	0	43	12	21.8182
ABCA13	0	genome.wustl.edu	37	7	48317944	48317944	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	48317944	48317944	T	-	DEL	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	frame_shift_del	c.7153	p.F2386fs	0.002	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				46	0	0	24	9	27.2727
PMS2	0	genome.wustl.edu	37	7	6027157	6027157	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	6027157	6027157	T	-	DEL	PMS2	ENST00000265849	human	ensembl	74_37	-1	known	frame_shift_del	c.1239	p.D414fs	0.017	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512				121	1	0.819672	54	20	27.027
C7orf63	0	genome.wustl.edu	37	7	89929188	89929188	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	7	89929188	89929188	A	-	DEL	C7orf63	ENST00000389297	human	ensembl	74_37	+1	known	frame_shift_del	c.1865	p.K624fs	0.996	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C7orf63	HGNC	ENSG00000105792				42	0	0	14	7	33.3333
UBR5	0	genome.wustl.edu	37	8	103274272	103274272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	103274272	103274272	A	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.7713	p.F2571fs	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				129	0	0	79	31	28.1818
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				182	1	0.546448	123	45	26.7857
FER1L6	0	genome.wustl.edu	37	8	125080031	125080031	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	125080031	125080031	A	-	DEL	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	frame_shift_del	c.3702	p.G1237fs	0.152	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				91	0	0	35	16	31.3725
ZNF572	0	genome.wustl.edu	37	8	125987893	125987893	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	125987893	125987893	A	-	DEL	ZNF572	ENST00000319286	human	ensembl	74_37	+1	known	frame_shift_del	c.11	p.K6fs	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF572	HGNC	ENSG00000180938				155	0	0	78	27	25.7143
PTK2	0	genome.wustl.edu	37	8	141754889	141754892	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	141754889	141754892	AAAA	-	DEL	PTK2	ENST00000518509	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.004:0.005:0.002	-	-	-	no_errors	PTK2	HGNC	ENSG00000169398				25	0	0	27	5	15.625
OPLAH	0	genome.wustl.edu	37	8	145109541	145109542	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	145109541	145109542	-	GG	INS	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	frame_shift_ins	c.2609_2608	p.H870fs	1.000:1.000	pfam_Hydantoinase_B	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				84	0	0	40	8	16.6667
HSF1	0	genome.wustl.edu	37	8	145535689	145535689	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	145535689	145535689	C	-	DEL	HSF1	ENST00000528838	human	ensembl	74_37	+1	known	frame_shift_del	c.901	p.S303fs	1.000	pfam_Vert_HSTF_C	pfam_Vert_HSTF_C,pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF1	HGNC	ENSG00000185122				22	0	0	25	2	7.40741
CCAR2	0	genome.wustl.edu	37	8	22472974	22472975	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	22472974	22472975	-	C	INS	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	frame_shift_ins	c.1242_1243	p.R416fs	0.963:1.000	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941				295	0	0	155	34	17.9894
ADAM28	0	genome.wustl.edu	37	8	24167472	24167473	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	24167472	24167473	-	A	INS	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	frame_shift_ins	c.216_217	p.N74fs	1.000:1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980				140	0	0	97	26	21.1382
NUGGC	0	genome.wustl.edu	37	8	27888776	27888776	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	27888776	27888776	T	-	DEL	NUGGC	ENST00000341513	human	ensembl	74_37	-1	known	frame_shift_del	c.1892	p.N631fs	0.005	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	NUGGC	HGNC	ENSG00000189233				372	0	0	228	61	21.1073
RAB11FIP1	0	genome.wustl.edu	37	8	37730746	37730747	+	RNA	DEL	GA	GA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	37730746	37730747	GA	-	DEL	RAB11FIP1	ENST00000523182	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.546:0.892	-	-	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				51	0	0	24	9	27.2727
RB1CC1	0	genome.wustl.edu	37	8	53568877	53568877	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	53568877	53568877	T	-	DEL	RB1CC1	ENST00000025008	human	ensembl	74_37	-1	known	frame_shift_del	c.3512	p.N1171fs	0.002	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287				67	0	0	73	13	15.1163
RP1	0	genome.wustl.edu	37	8	55539136	55539137	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	55539136	55539137	-	A	INS	RP1	ENST00000220676	human	ensembl	74_37	+1	known	frame_shift_ins	c.2694_2695	p.P900fs	1.000:1.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				76	0	0	72	24	25
MCPH1	0	genome.wustl.edu	37	8	6302639	6302639	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	6302639	6302639	A	-	DEL	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	frame_shift_del	c.1396	p.T468fs	0.010	pfam_Microcephalin	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				131	0	0	102	27	20.9302
NKAIN3	0	genome.wustl.edu	37	8	63831057	63831059	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	63831057	63831059	GAA	-	DEL	NKAIN3	ENST00000328472	human	ensembl	74_37	+1	known	in_frame_del	c.517_519	p.E175in_frame_del	1.000:1.000:1.000	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN3	HGNC	ENSG00000185942				56	0	0	30	7	18.9189
SGK3	0	genome.wustl.edu	37	8	67716612	67716612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	67716612	67716612	A	-	DEL	SGK3	ENST00000345714	human	ensembl	74_37	+1	known	frame_shift_del	c.183	p.K63fs	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Phox,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	SGK3	HGNC	ENSG00000104205				85	0	0	55	12	17.9104
CSPP1	0	genome.wustl.edu	37	8	68076631	68076631	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	68076631	68076631	A	-	DEL	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	frame_shift_del	c.2701	p.N903fs	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				105	1	0.943396	90	20	18.1818
ARFGEF1	0	genome.wustl.edu	37	8	68128855	68128856	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	68128855	68128856	-	G	INS	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	frame_shift_ins	c.4656_4655	p.P1553fs	0.000:0.000	NULL	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				116	0	0	76	21	21.6495
XKR9	0	genome.wustl.edu	37	8	71646461	71646461	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	71646461	71646461	C	-	DEL	XKR9	ENST00000408926	human	ensembl	74_37	+1	known	frame_shift_del	c.924	p.L310fs	0.298	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR9	HGNC	ENSG00000221947				32	0	0	47	5	9.61538
ZC2HC1A	0	genome.wustl.edu	37	8	79590834	79590834	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	79590834	79590834	A	-	DEL	ZC2HC1A	ENST00000263849	human	ensembl	74_37	+1	known	frame_shift_del	c.130	p.K45fs	1.000	NULL	NULL	-	no_errors	ZC2HC1A	HGNC	ENSG00000104427				247	0	0	159	57	26.3889
CNGB3	0	genome.wustl.edu	37	8	87645015	87645015	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	87645015	87645015	A	-	DEL	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	frame_shift_del	c.1285	p.S429fs	0.003	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289				74	0	0	63	6	8.69565
SLC26A7	0	genome.wustl.edu	37	8	92407491	92407491	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	92407491	92407491	T	-	DEL	SLC26A7	ENST00000520249	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC26A7	HGNC	ENSG00000147606				25	0	0	31	9	22.5
ESRP1	0	genome.wustl.edu	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	95686611	95686611	A	-	DEL	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	frame_shift_del	c.1528	p.N512fs	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				146	0	0	94	30	24.1935
INTS8	0	genome.wustl.edu	37	8	95892421	95892421	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	95892421	95892421	A	-	DEL	INTS8	ENST00000523731	human	ensembl	74_37	+1	known	frame_shift_del	c.2947	p.K985fs	1.000	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941				106	0	0	77	18	18.9474
SNORA72	0	genome.wustl.edu	37	8	99054837	99054839	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	8	99054837	99054839	AAA	-	DEL	SNORA72	ENST00000501016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.049:0.047:0.041	-	-	-	no_errors	KB-1208A12.3	Clone_based_vega_gene	ENSG00000245970				82	0	0	68	25	26.8817
COL15A1	0	genome.wustl.edu	37	9	101818643	101818643	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	101818643	101818643	G	-	DEL	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	frame_shift_del	c.3294	p.P1101fs	0.748	NULL	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				110	0	0	48	12	20
SMC2	0	genome.wustl.edu	37	9	106864838	106864838	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	106864838	106864838	A	-	DEL	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	frame_shift_del	c.1004	p.N337fs	0.999	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				66	0	0	32	6	15.7895
TRIM32	0	genome.wustl.edu	37	9	119461528	119461528	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	119461528	119461528	G	-	DEL	TRIM32	ENST00000373983	human	ensembl	74_37	+1	known	frame_shift_del	c.1507	p.V504fs	1.000	NULL	pfam_NHL_repeat,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM32	HGNC	ENSG00000119401				131	0	0	66	17	20.4819
NAIF1	0	genome.wustl.edu	37	9	130829063	130829063	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	130829063	130829063	C	-	DEL	NAIF1	ENST00000373078	human	ensembl	74_37	-1	known	frame_shift_del	c.318	p.P107fs	1.000	NULL	NULL	-	no_errors	NAIF1	HGNC	ENSG00000171169				122	0	0	34	14	29.1667
SPTAN1	0	genome.wustl.edu	37	9	131371511	131371511	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	131371511	131371511	A	-	DEL	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	frame_shift_del	c.4706	p.K1570fs	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				112	0	0	50	24	32.4324
PPP1R26	0	genome.wustl.edu	37	9	138379043	138379043	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	138379043	138379043	G	-	DEL	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	frame_shift_del	c.2687	p.V898fs	0.002	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				163	1	0.609756	60	26	30.2326
NPDC1	0	genome.wustl.edu	37	9	139934525	139934526	+	RNA	INS	-	-	G			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	139934525	139934526	-	G	INS	NPDC1	ENST00000472668	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.005	-	-	-	no_errors	NPDC1	HGNC	ENSG00000107281				52	0	0	13	7	35
PNPLA7	0	genome.wustl.edu	37	9	140356679	140356679	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	140356679	140356679	G	-	DEL	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	frame_shift_del	c.3597	p.I1200fs	1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				94	0	0	33	15	31.25
PNPLA7	0	genome.wustl.edu	37	9	140437890	140437890	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	140437890	140437890	T	-	DEL	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	frame_shift_del	c.500	p.N167fs	0.998	superfamily_cNMP-bd-like	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				223	0	0	86	29	25.2174
PSIP1	0	genome.wustl.edu	37	9	15472612	15472613	+	RNA	DEL	AA	AA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	15472612	15472613	AA	-	DEL	PSIP1	ENST00000495873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985				122	0	0	38	13	25.4902
CNTLN	0	genome.wustl.edu	37	9	17502598	17502598	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	17502598	17502598	A	-	DEL	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	frame_shift_del	c.4169	p.K1392fs	1.000	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				40	0	0	19	9	32.1429
MLLT3	0	genome.wustl.edu	37	9	20346378	20346380	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	20346378	20346380	AAA	-	DEL	MLLT3	ENST00000380323	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.966:0.950:0.903	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843				26	0	0	23	5	17.8571
MLLT3	0	genome.wustl.edu	37	9	20346378	20346381	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	20346378	20346381	AAAA	-	DEL	MLLT3	ENST00000380323	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.966:0.950:0.903:0.905	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843				27	0	0	26	2	7.14286
FAM74A3	0	genome.wustl.edu	37	9	40716160	40716161	+	RNA	DEL	GA	GA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	40716160	40716161	GA	-	DEL	FAM74A3	ENST00000355345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020:0.020	-	-	-	no_errors	FAM74A3	HGNC	ENSG00000204844				120	0	0	84	9	9.67742
ANKRD20A4	0	genome.wustl.edu	37	9	69421905	69421905	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	69421905	69421905	A	-	DEL	ANKRD20A4	ENST00000357336	human	ensembl	74_37	+1	known	frame_shift_del	c.1369	p.N459fs	0.373	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014				90	0	0	32	5	13.5135
PCSK5	0	genome.wustl.edu	37	9	78506105	78506105	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	78506105	78506105	G	-	DEL	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	frame_shift_del	c.8	p.S5fs	1.000	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				80	0	0	25	10	28.5714
TLE1	0	genome.wustl.edu	37	9	84208132	84208132	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	84208132	84208132	G	-	DEL	TLE1	ENST00000376499	human	ensembl	74_37	-1	known	frame_shift_del	c.1389	p.D464fs	0.002	superfamily_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781				147	0	0	71	12	14.4578
ASPN	0	genome.wustl.edu	37	9	95236979	95236979	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	95236979	95236979	A	-	DEL	ASPN	ENST00000375544	human	ensembl	74_37	-1	known	frame_shift_del	c.201	p.P68fs	0.936	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	ASPN	HGNC	ENSG00000106819				92	0	0	31	18	36.7347
SLC35D2	0	genome.wustl.edu	37	9	99083474	99083474	+	RNA	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	99083474	99083474	C	-	DEL	SLC35D2	ENST00000490599	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC35D2	HGNC	ENSG00000130958				57	0	0	26	16	38.0952
ZNF367	0	genome.wustl.edu	37	9	99150711	99150711	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	9	99150711	99150711	G	-	DEL	ZNF367	ENST00000375256	human	ensembl	74_37	-1	known	frame_shift_del	c.861	p.T288fs	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF367	HGNC	ENSG00000165244				179	0	0	61	22	26.506
RNF128	0	genome.wustl.edu	37	X	105937256	105937256	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	105937256	105937256	T	-	DEL	RNF128	ENST00000324342	human	ensembl	74_37	+1	known	frame_shift_del	c.24	p.W11fs	0.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135				40	0	0	17	31	64.5833
ATG4A	0	genome.wustl.edu	37	X	107395166	107395166	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	107395166	107395166	A	-	DEL	ATG4A	ENST00000474825	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG4A	HGNC	ENSG00000101844				50	0	0	17	20	54.0541
UTP14A	0	genome.wustl.edu	37	X	129055622	129055622	+	RNA	DEL	A	A	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	129055622	129055622	A	-	DEL	UTP14A	ENST00000498179	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	UTP14A	HGNC	ENSG00000156697				12	0	0	8	4	33.3333
ZNF449	0	genome.wustl.edu	37	X	134494267	134494268	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	134494267	134494268	-	C	INS	ZNF449	ENST00000339249	human	ensembl	74_37	+1	known	frame_shift_ins	c.823_824	p.E278fs	0.000:0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF449	HGNC	ENSG00000173275				124	0	0	56	8	12.5
PDZD4	0	genome.wustl.edu	37	X	153070220	153070220	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	153070220	153070220	C	-	DEL	PDZD4	ENST00000164640	human	ensembl	74_37	-1	known	frame_shift_del	c.898	p.D300fs	0.996	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840				66	0	0	17	22	56.4103
ASMTL	0	genome.wustl.edu	37	X	1546792	1546792	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	1546792	1546792	G	-	DEL	ASMTL	ENST00000381317	human	ensembl	74_37	-1	known	frame_shift_del	c.732	p.G245fs	0.002	NULL	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093				158	1	0.628931	71	24	25.2632
MAGEB17	0	genome.wustl.edu	37	X	16189321	16189321	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	16189321	16189321	G	-	DEL	MAGEB17	ENST00000400003	human	ensembl	74_37	+1	known	frame_shift_del	c.816	p.W273fs	0.941	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB17	HGNC	ENSG00000182798				51	0	0	14	9	39.1304
CNKSR2	0	genome.wustl.edu	37	X	21609255	21609256	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	21609255	21609256	-	A	INS	CNKSR2	ENST00000379510	human	ensembl	74_37	+1	known	frame_shift_ins	c.1773_1774	p.Y593fs	1.000:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970				84	0	0	18	39	68.4211
ARSD	0	genome.wustl.edu	37	X	2825315	2825315	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	2825315	2825315	G	-	DEL	ARSD	ENST00000381154	human	ensembl	74_37	-1	known	frame_shift_del	c.1779	p.*594fs	0.000	NULL	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSD	HGNC	ENSG00000006756				73	0	0	6	13	68.4211
MED14	0	genome.wustl.edu	37	X	40588606	40588608	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	40588606	40588608	AAA	-	DEL	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.610	-	-	-	no_errors	MED14	HGNC	ENSG00000180182				32	0	0	10	6	37.5
IQSEC2	0	genome.wustl.edu	37	X	53285177	53285177	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	53285177	53285177	G	-	DEL	IQSEC2	ENST00000396435	human	ensembl	74_37	-1	known	frame_shift_del	c.804	p.Y269fs	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_P-loop_NTPase,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC2	HGNC	ENSG00000124313				17	0	0	4	9	69.2308
ARHGEF9	0	genome.wustl.edu	37	X	62974289	62974289	+	RNA	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	62974289	62974289	T	-	DEL	ARHGEF9	ENST00000495564	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ARHGEF9	HGNC	ENSG00000131089				24	0	0	9	4	30.7692
RPS6KA6	0	genome.wustl.edu	37	X	83403063	83403063	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	X	83403063	83403063	T	-	DEL	RPS6KA6	ENST00000262752	human	ensembl	74_37	-1	known	frame_shift_del	c.327	p.A110fs	0.992	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133				47	0	0	15	13	46.4286
NLGN4Y	0	genome.wustl.edu	37	Y	16942150	16942150	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8372-01A-11D-2340-08	TCGA-BR-8372-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1c609ffd-aec9-4d54-8cca-ef445e176dfd	b8ec033b-f6fc-41f5-a02b-82e786b0afe3	Y	16942150	16942150	C	-	DEL	NLGN4Y	ENST00000382868	human	ensembl	74_37	+1	known	frame_shift_del	c.1523	p.A510fs	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,prints_Neuroligin	-	no_errors	NLGN4Y	HGNC	ENSG00000165246				95	0	0	34	24	41.3793
