Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
C1orf43	0	genome.wustl.edu	37	1	154179817	154179817	+	RNA	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	1	154179817	154179817	G	A	SNP	C1orf43	ENST00000483282	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf43	HGNC	ENSG00000143612				55	0	0	23	6	20.6897
DCST2	0	genome.wustl.edu	37	1	155002981	155002981	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	1	155002981	155002981	G	T	SNP	DCST2	ENST00000368424	human	ensembl	74_37	-1	known	missense	c.946	p.L316M	0.997	NULL	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354				82	0	0	31	18	36.7347
WDR26	0	genome.wustl.edu	37	1	224606064	224606064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	1	224606064	224606064	C	T	SNP	WDR26	ENST00000414423	human	ensembl	74_37	-1	known	missense	c.917	p.R306Q	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR26	HGNC	ENSG00000162923				119	0	0	42	32	43.2432
AGT	0	genome.wustl.edu	37	1	230839016	230839016	+	Silent	SNP	G	G	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	1	230839016	230839016	G	T	SNP	AGT	ENST00000366667	human	ensembl	74_37	-1	known	silent	c.1329	p.T443	0.001	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom,prints_Angiotensinogen	-	no_errors	AGT	HGNC	ENSG00000135744				221	0	0	81	34	29.5652
OPRD1	0	genome.wustl.edu	37	1	29185501	29185501	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	1	29185501	29185501	T	C	SNP	OPRD1	ENST00000234961	human	ensembl	74_37	+1	known	missense	c.263	p.I88T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Delta_opi_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt	-	no_errors	OPRD1	HGNC	ENSG00000116329				200	1	0.497512	85	23	21.2963
AGO3	0	genome.wustl.edu	37	1	36520681	36520681	+	Silent	SNP	A	A	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	1	36520681	36520681	A	C	SNP	AGO3	ENST00000373191	human	ensembl	74_37	+1	known	silent	c.2409	p.P803	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO3	HGNC	ENSG00000126070				44	0	0	44	6	12
DMRTB1	0	genome.wustl.edu	37	1	53925618	53925618	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	1	53925618	53925618	G	A	SNP	DMRTB1	ENST00000371445	human	ensembl	74_37	+1	known	silent	c.492	p.A164	0.003	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTB1	HGNC	ENSG00000143006				24	0	0	7	4	36.3636
TAS1R1	0	genome.wustl.edu	37	1	6631130	6631130	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	1	6631130	6631130	T	C	SNP	TAS1R1	ENST00000333172	human	ensembl	74_37	+1	known	missense	c.353	p.V118A	0.019	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R1	HGNC	ENSG00000173662				303	0	0	128	35	21.4724
KCNK18	0	genome.wustl.edu	37	10	118969314	118969314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	10	118969314	118969314	G	A	SNP	KCNK18	ENST00000334549	human	ensembl	74_37	+1	known	missense	c.659	p.R220H	0.047	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795				173	0	0	70	15	17.6471
EIF3A	0	genome.wustl.edu	37	10	120802173	120802173	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	10	120802173	120802173	G	A	SNP	EIF3A	ENST00000369144	human	ensembl	74_37	-1	known	silent	c.2859	p.D953	0.876	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581				373	0	0	114	67	37.0166
MYO3A	0	genome.wustl.edu	37	10	26457674	26457674	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	10	26457674	26457674	A	C	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	missense	c.3145	p.N1049H	1.000	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				93	0	0	25	5	16.6667
LRRC37A6P	0	genome.wustl.edu	37	10	27540714	27540714	+	RNA	SNP	A	A	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	10	27540714	27540714	A	G	SNP	LRRC37A6P	ENST00000574795	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LRRC37A6P	HGNC	ENSG00000230445				38	0	0	17	5	22.7273
SLC18A3	0	genome.wustl.edu	37	10	50819913	50819913	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	10	50819913	50819913	C	T	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	missense	c.1127	p.A376V	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				98	0	0	41	26	38.806
ZWINT	0	genome.wustl.edu	37	10	58119237	58119237	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	10	58119237	58119237	C	G	SNP	ZWINT	ENST00000373944	human	ensembl	74_37	-1	known	missense	c.480	p.Q160H	1.000	NULL	NULL	-	no_errors	ZWINT	HGNC	ENSG00000122952				130	0	0	43	6	12.2449
ZWINT	0	genome.wustl.edu	37	10	58119261	58119261	+	Silent	SNP	G	G	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	10	58119261	58119261	G	C	SNP	ZWINT	ENST00000373944	human	ensembl	74_37	-1	known	silent	c.456	p.V152	0.861	NULL	NULL	-	no_errors	ZWINT	HGNC	ENSG00000122952				139	0	0	51	5	8.92857
MRGPRX4	0	genome.wustl.edu	37	11	18194815	18194815	+	Silent	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	11	18194815	18194815	C	T	SNP	MRGPRX4	ENST00000314254	human	ensembl	74_37	+1	known	silent	c.12	p.T4	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX4	HGNC	ENSG00000179817				337	0	0	117	21	15.2174
OR8H3	0	genome.wustl.edu	37	11	55890770	55890770	+	Silent	SNP	A	A	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	11	55890770	55890770	A	C	SNP	OR8H3	ENST00000313472	human	ensembl	74_37	+1	known	silent	c.922	p.R308	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H3	HGNC	ENSG00000181761				191	0	0	42	15	26.3158
OR8J1	0	genome.wustl.edu	37	11	56128326	56128326	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	11	56128326	56128326	T	C	SNP	OR8J1	ENST00000303039	human	ensembl	74_37	+1	known	missense	c.604	p.S202P	0.375	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J1	HGNC	ENSG00000172487				87	0	0	23	9	28.125
OR56B1	0	genome.wustl.edu	37	11	5758675	5758675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	11	5758675	5758675	C	T	SNP	OR56B1	ENST00000317121	human	ensembl	74_37	+1	known	missense	c.929	p.A310V	0.005	pfam_7TM_GPCR_olfarory/Srsx	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR56B1	HGNC	ENSG00000181023				336	1	0.296736	107	87	44.8454
TMEM258	0	genome.wustl.edu	37	11	61557967	61557967	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	11	61557967	61557967	G	A	SNP	TMEM258	ENST00000257262	human	ensembl	74_37	-1	known	silent	c.111	p.F37	1.000	pfam_UPF0197	pfam_UPF0197	-	no_errors	TMEM258	HGNC	ENSG00000134825				59	0	0	13	4	23.5294
SLC22A10	0	genome.wustl.edu	37	11	63066406	63066406	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	11	63066406	63066406	C	G	SNP	SLC22A10	ENST00000332793	human	ensembl	74_37	+1	known	missense	c.845	p.S282C	0.998	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999				124	0	0	62	5	7.46269
CABP4	0	genome.wustl.edu	37	11	67225880	67225880	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	11	67225880	67225880	G	A	SNP	CABP4	ENST00000325656	human	ensembl	74_37	+1	known	silent	c.690	p.E230	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP4	HGNC	ENSG00000175544				228	0	0	70	8	10.2564
AQP11	0	genome.wustl.edu	37	11	77314623	77314623	+	Silent	SNP	A	A	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	11	77314623	77314623	A	C	SNP	AQP11	ENST00000313578	human	ensembl	74_37	+1	known	silent	c.642	p.V214	0.542	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_MIP	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_11,prints_MIP	-	no_errors	AQP11	HGNC	ENSG00000178301				253	0	0	74	33	30.8411
UTP20	0	genome.wustl.edu	37	12	101759386	101759386	+	Silent	SNP	G	G	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	12	101759386	101759386	G	C	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	silent	c.6108	p.L2036	0.999	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				45	0	0	16	3	15.7895
GPRC5A	0	genome.wustl.edu	37	12	13061831	13061831	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	12	13061831	13061831	G	A	SNP	GPRC5A	ENST00000014914	human	ensembl	74_37	+1	known	silent	c.648	p.T216	0.002	pfam_GPCR_3_C	pfam_GPCR_3_C	-	no_errors	GPRC5A	HGNC	ENSG00000013588				286	0	0	94	68	41.9753
CAPRIN2	0	genome.wustl.edu	37	12	30872159	30872159	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	12	30872159	30872159	C	A	SNP	CAPRIN2	ENST00000251071	human	ensembl	74_37	-1	known	missense	c.2149	p.A717S	1.000	pfam_Caprin-1_C	pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CAPRIN2	HGNC	ENSG00000110888				187	0	0	75	21	21.875
SHMT2	0	genome.wustl.edu	37	12	57628067	57628067	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	12	57628067	57628067	C	T	SNP	SHMT2	ENST00000328923	human	ensembl	74_37	+1	known	nonsense	c.1438	p.Q480*	0.845	superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT2	HGNC	ENSG00000182199				308	1	0.323625	98	53	35.0993
ALOX5AP	0	genome.wustl.edu	37	13	31338224	31338224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	13	31338224	31338224	C	T	SNP	ALOX5AP	ENST00000380490	human	ensembl	74_37	+1	known	missense	c.467	p.P156L	1.000	NULL	pfam_Membr-assoc_MAPEG,prints_5_LipOase_AP	-	no_errors	ALOX5AP	HGNC	ENSG00000132965				140	0	0	67	46	40.708
AHNAK2	0	genome.wustl.edu	37	14	105418917	105418917	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	14	105418917	105418917	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	silent	c.2871	p.G957	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				519	0	0	103	117	53.1818
HSPA2	0	genome.wustl.edu	37	14	65009426	65009426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	14	65009426	65009426	G	A	SNP	HSPA2	ENST00000247207	human	ensembl	74_37	+1	known	missense	c.1859	p.G620D	0.754	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803				57	0	0	9	17	65.3846
HEATR4	0	genome.wustl.edu	37	14	73989212	73989212	+	Silent	SNP	G	G	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	14	73989212	73989212	G	T	SNP	HEATR4	ENST00000334988	human	ensembl	74_37	-1	known	silent	c.645	p.A215	0.863	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105				61	0	0	27	9	25
SNORD115-15	0	genome.wustl.edu	37	15	25442727	25442727	+	RNA	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	15	25442727	25442727	C	T	SNP	SNORD115-15	ENST00000364809	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORD115-15	HGNC	ENSG00000201679				582	1	0.171527	172	56	24.5614
PIAS1	0	genome.wustl.edu	37	15	68445992	68445992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	15	68445992	68445992	G	A	SNP	PIAS1	ENST00000249636	human	ensembl	74_37	+1	known	missense	c.893	p.R298Q	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS1	HGNC	ENSG00000033800				65	0	0	5	3	37.5
PTX4	0	genome.wustl.edu	37	16	1538406	1538406	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	16	1538406	1538406	G	A	SNP	PTX4	ENST00000293922	human	ensembl	74_37	-1	known	silent	c.63	p.P21	0.000	NULL	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	PTX4	HGNC	ENSG00000251692				157	0	0	61	5	7.57576
RRN3P2	0	genome.wustl.edu	37	16	29110438	29110438	+	RNA	SNP	T	T	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	16	29110438	29110438	T	C	SNP	RRN3P2	ENST00000427965	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RRN3P2	HGNC	ENSG00000103472				60	0	0	30	3	9.09091
NAA60	0	genome.wustl.edu	37	16	3534809	3534809	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	16	3534809	3534809	C	T	SNP	NAA60	ENST00000407558	human	ensembl	74_37	+1	known	missense	c.683	p.S228L	1.000	NULL	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA60	HGNC	ENSG00000122390				18	0	0	6	3	33.3333
GSE1	0	genome.wustl.edu	37	16	85695249	85695249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	16	85695249	85695249	G	A	SNP	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	missense	c.2138	p.R713Q	0.512	NULL	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149				60	0	0	10	3	23.0769
ZCCHC14	0	genome.wustl.edu	37	16	87525317	87525317	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	16	87525317	87525317	G	A	SNP	ZCCHC14	ENST00000268616	human	ensembl	74_37	-1	known	silent	c.117	p.P39	0.985	NULL	pfam_SAM_type1,pfam_Znf_CCHC,superfamily_Phox,superfamily_SAM/pointed,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC14	HGNC	ENSG00000140948				23	0	0	2	4	66.6667
ABAT	0	genome.wustl.edu	37	16	8858686	8858686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	16	8858686	8858686	G	A	SNP	ABAT	ENST00000268251	human	ensembl	74_37	+1	known	missense	c.539	p.R180Q	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_4NH2But_aminotransferase_euk	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044				90	0	0	23	23	50
WDR81	0	genome.wustl.edu	37	17	1640709	1640709	+	Silent	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	17	1640709	1640709	C	T	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	silent	c.5556	p.T1852	0.621	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				95	0	0	37	4	9.7561
RECQL5	0	genome.wustl.edu	37	17	73625286	73625286	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	17	73625286	73625286	G	A	SNP	RECQL5	ENST00000317905	human	ensembl	74_37	-1	known	silent	c.2217	p.S739	0.000	pfam_RecQ_helicase-like_5	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469				65	0	0	31	3	8.82353
TP53	0	genome.wustl.edu	37	17	7578529	7578529	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	17	7578529	7578529	A	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.401	p.F134C	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				77	0	0	26	12	31.5789
SYNGR2	0	genome.wustl.edu	37	17	76167103	76167103	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	17	76167103	76167103	A	T	SNP	SYNGR2	ENST00000225777	human	ensembl	74_37	+1	known	missense	c.305	p.K102M	1.000	pfam_Marvel,pirsf_Synaptogyrin	pfam_Marvel,pirsf_Synaptogyrin	-	no_errors	SYNGR2	HGNC	ENSG00000108639				100	0	0	47	13	21.6667
SLC14A2	0	genome.wustl.edu	37	18	43248324	43248324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	18	43248324	43248324	G	A	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	missense	c.1918	p.A640T	1.000	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				84	0	0	49	16	24.6154
LAMA1	0	genome.wustl.edu	37	18	7037694	7037694	+	Silent	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	18	7037694	7037694	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.1620	p.P540	0.002	pfscan_Laminin_B_type_IV	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				122	1	0.813008	34	27	44.2623
RGL3	0	genome.wustl.edu	37	19	11526765	11526765	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	19	11526765	11526765	G	T	SNP	RGL3	ENST00000393423	human	ensembl	74_37	-1	known	missense	c.485	p.P162H	0.960	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517				95	0	0	40	6	13.0435
BRD4	0	genome.wustl.edu	37	19	15353741	15353741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	19	15353741	15353741	G	A	SNP	BRD4	ENST00000263377	human	ensembl	74_37	-1	known	missense	c.3139	p.R1047W	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				29	0	0	8	4	33.3333
IFI30	0	genome.wustl.edu	37	19	18285919	18285919	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	19	18285919	18285919	T	A	SNP	IFI30	ENST00000407280	human	ensembl	74_37	+1	known	missense	c.202	p.Y68N	1.000	pfam_Interferon-induced_GILT	pfam_Interferon-induced_GILT	-	no_errors	IFI30	HGNC	ENSG00000216490				78	0	0	66	6	8.33333
PDE4C	0	genome.wustl.edu	37	19	18329839	18329839	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	19	18329839	18329839	C	A	SNP	PDE4C	ENST00000355502	human	ensembl	74_37	-1	known	missense	c.976	p.D326Y	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4C	HGNC	ENSG00000105650				103	0	0	63	25	28.4091
KMT2B	0	genome.wustl.edu	37	19	36218478	36218478	+	Silent	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	19	36218478	36218478	C	T	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	silent	c.4257	p.G1419	0.996	pirsf_MeTrfase_trithorax,superfamily_Bromodomain	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				102	0	0	38	6	13.6364
KLC3	0	genome.wustl.edu	37	19	45852836	45852836	+	Silent	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	19	45852836	45852836	C	T	SNP	KLC3	ENST00000470402	human	ensembl	74_37	+1	known	silent	c.1161	p.N387	0.959	pfscan_TPR-contain_dom,prints_Kinesin_light	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC3	HGNC	ENSG00000104892				108	0	0	35	10	22.2222
CD33	0	genome.wustl.edu	37	19	51742771	51742771	+	Splice_Site	SNP	A	A	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	19	51742771	51742771	A	C	SNP	CD33	ENST00000262262	human	ensembl	74_37	+1	known	splice_site	c.925-2	e7-2	0.008	-	-	-	no_errors	CD33	HGNC	ENSG00000105383				72	0	0	28	5	15.1515
ZNF560	0	genome.wustl.edu	37	19	9577900	9577900	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	19	9577900	9577900	T	G	SNP	ZNF560	ENST00000301480	human	ensembl	74_37	-1	known	missense	c.1723	p.M575L	0.018	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028				195	0	0	37	68	64.7619
SCN9A	0	genome.wustl.edu	37	2	167134663	167134663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	2	167134663	167134663	C	T	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.2507	p.R836Q	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				133	0	0	37	6	13.9535
ICA1L	0	genome.wustl.edu	37	2	203680659	203680659	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	2	203680659	203680659	T	G	SNP	ICA1L	ENST00000358299	human	ensembl	74_37	-1	known	missense	c.758	p.H253P	0.182	NULL	pfam_Islet_autoAg_Ica1_C,pfam_AH_dom,pfscan_AH_dom	-	no_errors	ICA1L	HGNC	ENSG00000163596				155	0	0	49	9	15.5172
AQP12B	0	genome.wustl.edu	37	2	241621908	241621908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	2	241621908	241621908	G	A	SNP	AQP12B	ENST00000407834	human	ensembl	74_37	-1	known	missense	c.347	p.A116V	0.031	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12B	HGNC	ENSG00000185176				58	0	0	35	2	5.40541
KIF3C	0	genome.wustl.edu	37	2	26203307	26203307	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	2	26203307	26203307	C	G	SNP	KIF3C	ENST00000264712	human	ensembl	74_37	-1	known	missense	c.1480	p.E494Q	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3C	HGNC	ENSG00000084731				123	0	0	53	7	11.6667
HEATR5B	0	genome.wustl.edu	37	2	37296009	37296009	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	2	37296009	37296009	A	C	SNP	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	missense	c.992	p.L331R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				74	0	0	79	34	30.0885
TMEM178A	0	genome.wustl.edu	37	2	39893487	39893487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	2	39893487	39893487	C	T	SNP	TMEM178A	ENST00000281961	human	ensembl	74_37	+1	known	missense	c.373	p.R125W	1.000	NULL	NULL	-	no_errors	TMEM178A	HGNC	ENSG00000152154				18	0	0	3	2	40
PNPT1	0	genome.wustl.edu	37	2	55872550	55872550	+	Silent	SNP	A	A	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	2	55872550	55872550	A	G	SNP	PNPT1	ENST00000415374	human	ensembl	74_37	-1	known	silent	c.1756	p.L586	0.895	superfamily_ExoRNase_PH_dom2,pirsf_PNPase,tigrfam_PNPase	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,pfam_PNPase_PH_RNA-bd_bac/org-type,pfam_KH_dom_type_1,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2,superfamily_PNPase_PH_RNA-bd_bac/org-type,superfamily_NA-bd_OB-fold,smart_KH_dom,smart_RNA-binding_domain_S1,pirsf_PNPase,pfscan_KH_dom_type_1,pfscan_Rbsml_prot_S1_RNA-bd_dom,tigrfam_PNPase	-	no_errors	PNPT1	HGNC	ENSG00000138035				77	0	0	27	16	37.2093
FASTKD5	0	genome.wustl.edu	37	20	3129655	3129655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	20	3129655	3129655	G	A	SNP	FASTKD5	ENST00000380266	human	ensembl	74_37	-1	known	missense	c.62	p.A21V	0.045	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD5	HGNC	ENSG00000215251				150	0	0	66	36	35.2941
PTPRT	0	genome.wustl.edu	37	20	40710603	40710603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	20	40710603	40710603	C	T	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.4248	p.M1416I	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				141	0	0	90	22	19.6429
KRTAP10-2	0	genome.wustl.edu	37	21	45971299	45971299	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	21	45971299	45971299	T	C	SNP	KRTAP10-2	ENST00000391621	human	ensembl	74_37	-1	known	missense	c.43	p.N15D	0.198	NULL	NULL	-	no_errors	KRTAP10-2	HGNC	ENSG00000205445				305	0	0	90	5	5.26316
TUBA3FP	0	genome.wustl.edu	37	22	21363306	21363306	+	RNA	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	22	21363306	21363306	G	A	SNP	TUBA3FP	ENST00000292748	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBA3FP	HGNC	ENSG00000161149				141	0	0	59	4	6.34921
RAB36	0	genome.wustl.edu	37	22	23503113	23503113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	22	23503113	23503113	G	A	SNP	RAB36	ENST00000263116	human	ensembl	74_37	+1	known	missense	c.865	p.E289K	1.000	superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB36	HGNC	ENSG00000100228				175	0	0	47	20	29.8507
IGSF11	0	genome.wustl.edu	37	3	118621614	118621614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	3	118621614	118621614	C	T	SNP	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	missense	c.1049	p.G350D	0.921	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847				205	0	0	100	57	36.3057
IFT122	0	genome.wustl.edu	37	3	129221675	129221675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	3	129221675	129221675	G	A	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	missense	c.2650	p.D884N	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913				160	0	0	51	33	39.2857
FGD5	0	genome.wustl.edu	37	3	14861698	14861698	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	3	14861698	14861698	T	G	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	missense	c.1120	p.S374A	0.642	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783				147	0	0	74	12	13.9535
RTP1	0	genome.wustl.edu	37	3	186917605	186917605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	3	186917605	186917605	G	A	SNP	RTP1	ENST00000312295	human	ensembl	74_37	+1	known	missense	c.539	p.R180H	1.000	NULL	NULL	-	no_errors	RTP1	HGNC	ENSG00000175077				45	0	0	35	19	35.1852
CDC25A	0	genome.wustl.edu	37	3	48224509	48224509	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	3	48224509	48224509	C	G	SNP	CDC25A	ENST00000302506	human	ensembl	74_37	-1	known	missense	c.339	p.L113F	1.000	pfam_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25A	HGNC	ENSG00000164045				105	0	0	42	21	33.3333
UBA7	0	genome.wustl.edu	37	3	49847484	49847484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	3	49847484	49847484	G	A	SNP	UBA7	ENST00000333486	human	ensembl	74_37	-1	known	missense	c.1766	p.A589V	0.000	pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179				158	0	0	89	9	9.18367
ANK2	0	genome.wustl.edu	37	4	114223992	114223992	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	4	114223992	114223992	G	T	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	nonsense	c.2545	p.E849*	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				159	0	0	33	4	10.8108
FABP2	0	genome.wustl.edu	37	4	120241826	120241826	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	4	120241826	120241826	C	A	SNP	FABP2	ENST00000274024	human	ensembl	74_37	-1	known	missense	c.239	p.R80M	0.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP2	HGNC	ENSG00000145384				134	0	0	25	5	16.6667
PCDH10	0	genome.wustl.edu	37	4	134073167	134073167	+	Silent	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	4	134073167	134073167	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	silent	c.1872	p.N624	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				143	0	0	35	27	43.5484
ADAM29	0	genome.wustl.edu	37	4	175897990	175897990	+	Silent	SNP	T	T	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	4	175897990	175897990	T	G	SNP	ADAM29	ENST00000359240	human	ensembl	74_37	+1	known	silent	c.1314	p.A438	0.998	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,prints_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594				155	0	0	43	27	38.5714
ASB5	0	genome.wustl.edu	37	4	177146474	177146474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	4	177146474	177146474	G	A	SNP	ASB5	ENST00000296525	human	ensembl	74_37	-1	known	missense	c.215	p.S72L	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB5	HGNC	ENSG00000164122				120	0	0	19	32	62.7451
RGS12	0	genome.wustl.edu	37	4	3432142	3432142	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	4	3432142	3432142	G	T	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	nonsense	c.3574	p.E1192*	1.000	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				228	0	0	51	19	27.1429
CTNND2	0	genome.wustl.edu	37	5	11346621	11346621	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	11346621	11346621	G	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	silent	c.1491	p.S497	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				242	0	0	142	36	20.2247
DNAH5	0	genome.wustl.edu	37	5	13716678	13716678	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	13716678	13716678	A	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.12827	p.M4276T	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				84	0	0	46	12	20.6897
PCDHA6	0	genome.wustl.edu	37	5	140207976	140207976	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	140207976	140207976	G	A	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	silent	c.300	p.A100	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				469	0	0	130	50	27.7778
PCDHB4	0	genome.wustl.edu	37	5	140502259	140502259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	140502259	140502259	G	A	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	missense	c.679	p.V227I	0.003	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818				167	0	0	51	22	30.137
PCDHB14	0	genome.wustl.edu	37	5	140604697	140604697	+	Silent	SNP	G	G	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	140604697	140604697	G	T	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	silent	c.1620	p.A540	0.631	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				201	0	0	74	4	5.12821
PCDHGA4	0	genome.wustl.edu	37	5	140736094	140736094	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	140736094	140736094	A	G	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.1327	p.M443V	0.014	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576				149	0	0	42	5	10.6383
C5orf42	0	genome.wustl.edu	37	5	37169353	37169353	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	37169353	37169353	C	A	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	missense	c.6773	p.R2258I	0.948	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				173	0	0	123	23	15.7534
ADAMTS16	0	genome.wustl.edu	37	5	5235251	5235251	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	5235251	5235251	C	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	nonsense	c.1975	p.R659*	0.975	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				150	0	0	58	45	43.6893
IQGAP2	0	genome.wustl.edu	37	5	75967731	75967731	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	75967731	75967731	G	A	SNP	IQGAP2	ENST00000274364	human	ensembl	74_37	+1	known	silent	c.2991	p.S997	0.979	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703				69	0	0	10	10	50
ATP6AP1L	0	genome.wustl.edu	37	5	81613993	81613993	+	Silent	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	81613993	81613993	C	T	SNP	ATP6AP1L	ENST00000380167	human	ensembl	74_37	+1	known	silent	c.549	p.I183	0.000	NULL	NULL	-	no_errors	ATP6AP1L	HGNC	ENSG00000205464				110	0	0	36	3	7.69231
TAS2R1	0	genome.wustl.edu	37	5	9629277	9629277	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	9629277	9629277	T	A	SNP	TAS2R1	ENST00000382492	human	ensembl	74_37	-1	known	nonsense	c.868	p.K290*	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R1	HGNC	ENSG00000169777				160	0	0	90	20	18.1818
AHI1	0	genome.wustl.edu	37	6	135784313	135784313	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	6	135784313	135784313	T	C	SNP	AHI1	ENST00000265602	human	ensembl	74_37	-1	known	missense	c.881	p.Q294R	0.919	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541				102	0	0	41	4	8.88889
PHACTR2	0	genome.wustl.edu	37	6	144075049	144075049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	6	144075049	144075049	G	A	SNP	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	missense	c.454	p.E152K	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419				49	0	0	16	6	27.2727
SYNE1	0	genome.wustl.edu	37	6	152725384	152725384	+	Silent	SNP	T	T	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	6	152725384	152725384	T	C	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.6789	p.E2263	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				132	1	0.75188	44	18	29.0323
TIAM2	0	genome.wustl.edu	37	6	155504497	155504497	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	6	155504497	155504497	A	G	SNP	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	missense	c.2927	p.D976G	0.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				135	0	0	114	13	10.2362
SCGN	0	genome.wustl.edu	37	6	25670264	25670264	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	6	25670264	25670264	C	T	SNP	SCGN	ENST00000377961	human	ensembl	74_37	+1	known	missense	c.431	p.A144V	0.002	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	SCGN	HGNC	ENSG00000079689				314	0	0	160	31	16.2304
VPS52	0	genome.wustl.edu	37	6	33231791	33231791	+	Silent	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	6	33231791	33231791	C	T	SNP	VPS52	ENST00000445902	human	ensembl	74_37	-1	known	silent	c.1614	p.Q538	1.000	pfam_Vps52	pfam_Vps52,pfam_Exocyst_Exoc1/SEC3	-	no_errors	VPS52	HGNC	ENSG00000223501				289	0	0	155	28	15.3005
DST	0	genome.wustl.edu	37	6	56716385	56716385	+	Silent	SNP	G	G	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	6	56716385	56716385	G	C	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.435	p.S145	1.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				55	0	0	29	5	14.7059
PRIM2	0	genome.wustl.edu	37	6	57372310	57372310	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	6	57372310	57372310	C	A	SNP	PRIM2	ENST00000607273	human	ensembl	74_37	+1	known	missense	c.716	p.A239D	0.995	pfam_DNA_primase_lsu_euk/arc	pfam_DNA_primase_lsu_euk/arc	-	no_errors	PRIM2	HGNC	ENSG00000146143				111	0	0	49	9	15.5172
LHFPL3	0	genome.wustl.edu	37	7	104377349	104377349	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	7	104377349	104377349	G	T	SNP	LHFPL3	ENST00000535008	human	ensembl	74_37	+1	known	nonsense	c.673	p.E225*	1.000	NULL	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL3	HGNC	ENSG00000187416				21	0	0	7	3	30
DGKB	0	genome.wustl.edu	37	7	14613993	14613993	+	Silent	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	7	14613993	14613993	G	A	SNP	DGKB	ENST00000258767	human	ensembl	74_37	-1	known	silent	c.1617	p.Y539	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267				140	0	0	47	12	20.339
SPAG1	0	genome.wustl.edu	37	8	101237549	101237549	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	8	101237549	101237549	C	G	SNP	SPAG1	ENST00000251809	human	ensembl	74_37	+1	known	missense	c.1837	p.R613G	0.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450				65	0	0	29	19	39.5833
EIF3H	0	genome.wustl.edu	37	8	117658748	117658748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	8	117658748	117658748	G	A	SNP	EIF3H	ENST00000521861	human	ensembl	74_37	-1	known	missense	c.923	p.P308L	0.230	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	EIF3H	HGNC	ENSG00000147677				386	0	0	127	74	36.8159
MSR1	0	genome.wustl.edu	37	8	16021687	16021687	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	8	16021687	16021687	T	C	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	missense	c.704	p.H235R	0.071	superfamily_STAT_TF_coiled-coil	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				76	0	0	6	9	60
ADAM7	0	genome.wustl.edu	37	8	24358343	24358343	+	Silent	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	8	24358343	24358343	C	T	SNP	ADAM7	ENST00000175238	human	ensembl	74_37	+1	known	silent	c.2043	p.V681	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206				174	0	0	56	11	16.4179
RUNX1T1	0	genome.wustl.edu	37	8	92983012	92983012	+	Silent	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	8	92983012	92983012	C	T	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	silent	c.1446	p.A482	0.012	prints_ETO	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				91	0	0	35	10	22.2222
SUSD1	0	genome.wustl.edu	37	9	114840902	114840902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	9	114840902	114840902	G	A	SNP	SUSD1	ENST00000374264	human	ensembl	74_37	-1	known	missense	c.1669	p.R557C	0.033	superfamily_Fibronectin_type3	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD1	HGNC	ENSG00000106868				173	0	0	41	35	46.0526
SH2D3C	0	genome.wustl.edu	37	9	130504085	130504085	+	Silent	SNP	A	A	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	9	130504085	130504085	A	G	SNP	SH2D3C	ENST00000314830	human	ensembl	74_37	-1	known	silent	c.2070	p.G690	0.975	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	SH2D3C	HGNC	ENSG00000095370				79	0	0	59	13	18.0556
GBGT1	0	genome.wustl.edu	37	9	136029548	136029548	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	9	136029548	136029548	C	T	SNP	GBGT1	ENST00000372040	human	ensembl	74_37	-1	known	missense	c.460	p.V154I	0.067	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GBGT1	HGNC	ENSG00000148288				85	0	0	20	18	47.3684
ADAMTS13	0	genome.wustl.edu	37	9	136320437	136320437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	9	136320437	136320437	C	T	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	missense	c.3280	p.R1094C	0.332	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				335	0	0	127	36	22.0859
DCAF10	0	genome.wustl.edu	37	9	37861563	37861563	+	RNA	SNP	T	T	A			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	9	37861563	37861563	T	A	SNP	DCAF10	ENST00000483167	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DCAF10	HGNC	ENSG00000122741				91	0	0	32	6	15.7895
TJP2	0	genome.wustl.edu	37	9	71840295	71840295	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	9	71840295	71840295	A	G	SNP	TJP2	ENST00000539225	human	ensembl	74_37	+1	known	missense	c.1121	p.N374S	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139				61	0	0	25	12	32.4324
C9orf135	0	genome.wustl.edu	37	9	72521031	72521031	+	Silent	SNP	T	T	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	9	72521031	72521031	T	C	SNP	C9orf135	ENST00000377197	human	ensembl	74_37	+1	known	silent	c.669	p.S223	0.000	NULL	NULL	-	no_errors	C9orf135	HGNC	ENSG00000204711				155	0	0	44	9	16.9811
FBP1	0	genome.wustl.edu	37	9	97367856	97367856	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	9	97367856	97367856	A	C	SNP	FBP1	ENST00000375326	human	ensembl	74_37	-1	known	missense	c.708	p.D236E	1.000	pfam_FBPase_class-1/SBPase,prints_FBPtase	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPtase,prints_SBPase	-	no_errors	FBP1	HGNC	ENSG00000165140				52	0	0	19	3	13.6364
BRS3	0	genome.wustl.edu	37	X	135572290	135572290	+	Splice_Site	SNP	A	A	G			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	X	135572290	135572290	A	G	SNP	BRS3	ENST00000370648	human	ensembl	74_37	+1	known	splice_site	c.435-2	e2-2	1.000	-	-	-	no_errors	BRS3	HGNC	ENSG00000102239				138	0	0	61	4	6.15385
CSAG4	0	genome.wustl.edu	37	X	151896273	151896273	+	RNA	SNP	C	C	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	X	151896273	151896273	C	T	SNP	CSAG4	ENST00000361201	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CSAG4	HGNC	ENSG00000242599				231	0	0	73	4	5.19481
SYCP1	0	genome.wustl.edu	37	1	115428813	115428813	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	1	115428813	115428813	A	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.1073	p.E360fs	1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				161	0	0	47	10	17.5439
TAF5L	0	genome.wustl.edu	37	1	229730496	229730521	+	Frame_Shift_Del	DEL	AGTTTGAATTAGGGTGGAATTTGACA	AGTTTGAATTAGGGTGGAATTTGACA	-			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	AGTTTGAATTAGGGTGGAATTTGACA	AGTTTGAATTAGGGTGGAATTTGACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	1	229730496	229730521	AGTTTGAATTAGGGTGGAATTTGACA	-	DEL	TAF5L	ENST00000258281	human	ensembl	74_37	-1	known	frame_shift_del	c.1318_1293	p.C431fs	1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.998:1.000:1.000:0.705:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.982:0.992:0.997:0.997:1.000:1.000:0.996	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TAF5L	HGNC	ENSG00000135801				284	0	0	125	11	8.08824
AGO4	0	genome.wustl.edu	37	1	36297027	36297028	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	1	36297027	36297028	-	T	INS	AGO4	ENST00000373210	human	ensembl	74_37	+1	known	frame_shift_ins	c.850_849	p.P286fs	1.000:1.000	pfam_PAZ_dom,superfamily_PAZ_dom,smart_PAZ_dom,pfscan_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO4	HGNC	ENSG00000134698				132	0	0	35	12	25.5319
SLCO2B1	0	genome.wustl.edu	37	11	74880733	74880748	+	Frame_Shift_Del	DEL	GATGGGGCCAGGCCTG	GATGGGGCCAGGCCTG	-			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	GATGGGGCCAGGCCTG	GATGGGGCCAGGCCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	11	74880733	74880748	GATGGGGCCAGGCCTG	-	DEL	SLCO2B1	ENST00000289575	human	ensembl	74_37	+1	known	frame_shift_del	c.705_720	p.M236fs	1.000:1.000:1.000:0.998:1.000:1.000:0.992:1.000:1.000:0.971:0.983:0.972:0.665:0.243:0.995:1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO2B1	HGNC	ENSG00000137491				249	0	0	98	7	6.66667
ADH6	0	genome.wustl.edu	37	4	100128701	100128702	+	In_Frame_Ins	INS	-	-	CCC			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	4	100128701	100128702	-	CCC	INS	ADH6	ENST00000394899	human	ensembl	74_37	-1	known	in_frame_ins	c.866_865	p.289in_frame_insG	0.204:0.203	pfam_ADH_C,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH6	HGNC	ENSG00000172955				125	0	0	48	10	17.2414
BTNL3	0	genome.wustl.edu	37	5	180432479	180432479	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	5	180432479	180432479	C	-	DEL	BTNL3	ENST00000342868	human	ensembl	74_37	+1	known	frame_shift_del	c.1008	p.Q337fs	0.372	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTNL3	HGNC	ENSG00000168903				179	0	0	49	22	30.9859
PRRC2A	0	genome.wustl.edu	37	6	31601316	31601316	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	6	31601316	31601316	G	-	DEL	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	frame_shift_del	c.4480	p.G1495fs	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				114	0	0	47	8	14.5455
OR2A25	0	genome.wustl.edu	37	7	143772005	143772005	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8373-01A-11D-2340-08	TCGA-BR-8373-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f2a8889-4374-4037-bb56-0f20733380e3	2c5cc2c4-1c45-478b-9575-8e0206bb7de3	7	143772005	143772005	G	-	DEL	OR2A25	ENST00000408898	human	ensembl	74_37	+1	known	frame_shift_del	c.693	p.C233fs	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A25	HGNC	ENSG00000221933				174	0	0	75	41	35.3448
