Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
FBXO44	0	genome.wustl.edu	37	1	11715958	11715958	+	Silent	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	11715958	11715958	C	T	SNP	FBXO44	ENST00000251547	human	ensembl	74_37	+1	known	silent	c.66	p.P22	0.037	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	pfam_F-box-assoc_dom,pfam_F-box_dom,superfamily_Galactose-bd-like,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom,pfscan_F-box-assoc_dom	-	no_errors	FBXO44	HGNC	ENSG00000132879				45	0	0	53	6	10.1695
CD1A	0	genome.wustl.edu	37	1	158226001	158226001	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	158226001	158226001	T	C	SNP	CD1A	ENST00000289429	human	ensembl	74_37	+1	known	missense	c.533	p.L178P	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1A	HGNC	ENSG00000158477				38	0	0	51	6	10.5263
DCAF6	0	genome.wustl.edu	37	1	167974018	167974018	+	Silent	SNP	A	A	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	167974018	167974018	A	G	SNP	DCAF6	ENST00000367840	human	ensembl	74_37	+1	known	silent	c.1365	p.T455	0.140	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164				25	0	0	24	4	14.2857
SELP	0	genome.wustl.edu	37	1	169565209	169565209	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	169565209	169565209	G	C	SNP	SELP	ENST00000263686	human	ensembl	74_37	-1	known	missense	c.2055	p.S685R	0.002	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175				206	0	0	221	27	10.8871
PAPPA2	0	genome.wustl.edu	37	1	176668366	176668366	+	Silent	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	176668366	176668366	C	T	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	silent	c.2877	p.H959	1.000	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				64	0	0	74	8	9.7561
PAPPA2	0	genome.wustl.edu	37	1	176668713	176668713	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	176668713	176668713	A	C	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.3224	p.K1075T	0.174	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				79	0	0	82	12	12.766
TMCO4	0	genome.wustl.edu	37	1	20097049	20097049	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	20097049	20097049	A	G	SNP	TMCO4	ENST00000294543	human	ensembl	74_37	-1	known	missense	c.368	p.F123S	1.000	NULL	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542				29	0	0	28	9	24.3243
FAM71A	0	genome.wustl.edu	37	1	212798427	212798427	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	212798427	212798427	A	T	SNP	FAM71A	ENST00000294829	human	ensembl	74_37	+1	known	missense	c.208	p.T70S	1.000	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771				40	0	0	38	9	19.1489
RYR2	0	genome.wustl.edu	37	1	237870335	237870335	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	237870335	237870335	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.9661	p.E3221K	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				50	0	0	54	11	16.9231
OR2L2	0	genome.wustl.edu	37	1	248201664	248201664	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	248201664	248201664	T	C	SNP	OR2L2	ENST00000366479	human	ensembl	74_37	+1	known	missense	c.95	p.L32P	0.761	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L2	HGNC	ENSG00000203663				80	0	0	84	6	6.66667
PER3	0	genome.wustl.edu	37	1	7863904	7863904	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	7863904	7863904	C	T	SNP	PER3	ENST00000361923	human	ensembl	74_37	+1	known	nonsense	c.1129	p.R377*	0.997	superfamily_PAS	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246				22	0	0	25	3	10.7143
BRDT	0	genome.wustl.edu	37	1	92433710	92433710	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	1	92433710	92433710	A	T	SNP	BRDT	ENST00000362005	human	ensembl	74_37	+1	known	missense	c.338	p.D113V	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948				24	0	0	23	3	11.5385
CELF2	0	genome.wustl.edu	37	10	11259399	11259399	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	10	11259399	11259399	G	A	SNP	CELF2	ENST00000450189	human	ensembl	74_37	+1	known	missense	c.283	p.V95I	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	CELF2	HGNC	ENSG00000048740				20	0	0	13	5	27.7778
FRMPD2	0	genome.wustl.edu	37	10	49376666	49376666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	10	49376666	49376666	G	A	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	missense	c.3509	p.A1170V	0.001	superfamily_PDZ	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324				44	0	0	40	4	9.09091
GATA3	0	genome.wustl.edu	37	10	8100641	8100641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	10	8100641	8100641	G	A	SNP	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	missense	c.615	p.M205I	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				87	0	0	93	9	8.82353
MMP27	0	genome.wustl.edu	37	11	102563733	102563733	+	Silent	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	11	102563733	102563733	C	T	SNP	MMP27	ENST00000260229	human	ensembl	74_37	-1	known	silent	c.1233	p.P411	0.000	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP27	HGNC	ENSG00000137675				60	0	0	61	13	17.5676
WT1	0	genome.wustl.edu	37	11	32450105	32450105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	11	32450105	32450105	G	A	SNP	WT1	ENST00000332351	human	ensembl	74_37	-1	known	missense	c.707	p.A236V	0.982	pfam_Wilms_tumour_N	pfam_Wilms_tumour_N,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Wilms_tumour	-	no_errors	WT1	HGNC	ENSG00000184937				30	0	0	31	2	6.06061
OR5T2	0	genome.wustl.edu	37	11	55999758	55999758	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	11	55999758	55999758	T	G	SNP	OR5T2	ENST00000313264	human	ensembl	74_37	-1	known	missense	c.904	p.S302R	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T2	HGNC	ENSG00000181718				69	0	0	52	8	13.3333
OR9G4	0	genome.wustl.edu	37	11	56510973	56510973	+	Silent	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	11	56510973	56510973	C	T	SNP	OR9G4	ENST00000302957	human	ensembl	74_37	-1	known	silent	c.315	p.K105	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9G4	HGNC	ENSG00000172457				65	0	0	70	11	13.5802
TRPV4	0	genome.wustl.edu	37	12	110230484	110230484	+	Silent	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	12	110230484	110230484	C	T	SNP	TRPV4	ENST00000261740	human	ensembl	74_37	-1	known	silent	c.1797	p.T599	0.437	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,prints_TRPV4_channel,tigrfam_TRP_channel	-	no_errors	TRPV4	HGNC	ENSG00000111199				30	0	0	31	3	8.82353
FGF23	0	genome.wustl.edu	37	12	4479725	4479725	+	Silent	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	12	4479725	4479725	G	A	SNP	FGF23	ENST00000237837	human	ensembl	74_37	-1	known	silent	c.540	p.S180	0.989	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF23	HGNC	ENSG00000118972				38	0	0	31	4	11.4286
RCBTB1	0	genome.wustl.edu	37	13	50140787	50140787	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	13	50140787	50140787	C	T	SNP	RCBTB1	ENST00000258646	human	ensembl	74_37	-1	known	missense	c.244	p.G82R	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB1	HGNC	ENSG00000136144				44	0	0	42	7	14.2857
POTEM	0	genome.wustl.edu	37	14	20019959	20019959	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	14	20019959	20019959	C	G	SNP	POTEM	ENST00000547848	human	ensembl	74_37	-1	known	missense	c.262	p.D88H	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEM	HGNC	ENSG00000187537				168	0	0	185	11	5.61224
TBPL2	0	genome.wustl.edu	37	14	55907216	55907216	+	Silent	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	14	55907216	55907216	C	T	SNP	TBPL2	ENST00000247219	human	ensembl	74_37	-1	known	silent	c.48	p.P16	0.000	NULL	pfam_TBP,prints_TBP	-	no_errors	TBPL2	HGNC	ENSG00000182521				38	0	0	45	5	10
ARID4A	0	genome.wustl.edu	37	14	58833646	58833646	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	14	58833646	58833646	A	T	SNP	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	missense	c.3569	p.Q1190L	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219				28	0	0	26	2	7.14286
HSPA2	0	genome.wustl.edu	37	14	65008905	65008905	+	Silent	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	14	65008905	65008905	C	T	SNP	HSPA2	ENST00000247207	human	ensembl	74_37	+1	known	silent	c.1338	p.Y446	0.982	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803				37	0	0	45	12	21.0526
TSHR	0	genome.wustl.edu	37	14	81609934	81609934	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	14	81609934	81609934	C	T	SNP	TSHR	ENST00000298171	human	ensembl	74_37	+1	known	missense	c.1532	p.T511M	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_TSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409				25	0	0	22	7	24.1379
DUOX1	0	genome.wustl.edu	37	15	45428573	45428573	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	15	45428573	45428573	C	G	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	missense	c.890	p.P297R	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				32	0	0	23	2	8
TLN2	0	genome.wustl.edu	37	15	63111822	63111822	+	Splice_Site	SNP	T	T	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	15	63111822	63111822	T	A	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	splice_site	c.6877+2	e50+2	0.986	-	-	-	no_errors	TLN2	HGNC	ENSG00000171914				25	0	0	26	8	23.5294
NOX5	0	genome.wustl.edu	37	15	69328256	69328256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	15	69328256	69328256	C	T	SNP	NOX5	ENST00000388866	human	ensembl	74_37	+1	known	missense	c.1168	p.R390C	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NOX5	HGNC	ENSG00000255346				65	0	0	67	10	12.987
NEO1	0	genome.wustl.edu	37	15	73552659	73552659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	15	73552659	73552659	G	A	SNP	NEO1	ENST00000261908	human	ensembl	74_37	+1	known	missense	c.2251	p.V751I	0.985	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NEO1	HGNC	ENSG00000067141				35	0	0	34	7	17.0732
ALPK3	0	genome.wustl.edu	37	15	85383832	85383832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	15	85383832	85383832	C	T	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	missense	c.1928	p.A643V	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				22	0	0	37	4	9.7561
TTLL13	0	genome.wustl.edu	37	15	90799041	90799041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	15	90799041	90799041	C	T	SNP	TTLL13	ENST00000438251	human	ensembl	74_37	+1	known	missense	c.472	p.R158W	0.953	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL13	HGNC	ENSG00000213471				178	0	0	152	18	10.5882
ABCC6	0	genome.wustl.edu	37	16	16256896	16256896	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	16	16256896	16256896	C	T	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	missense	c.3460	p.V1154I	0.777	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				83	0	0	84	17	16.8317
SRRM2	0	genome.wustl.edu	37	16	2815007	2815007	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	16	2815007	2815007	C	G	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	missense	c.4478	p.P1493R	0.936	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				117	0	0	99	12	10.8108
TPPP3	0	genome.wustl.edu	37	16	67424237	67424237	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	16	67424237	67424237	C	T	SNP	TPPP3	ENST00000290942	human	ensembl	74_37	-1	known	missense	c.371	p.R124Q	1.000	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP3	HGNC	ENSG00000159713				105	0	0	109	9	7.62712
CDH1	0	genome.wustl.edu	37	16	68847403	68847403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	16	68847403	68847403	G	A	SNP	CDH1	ENST00000566510	human	ensembl	74_37	+1	known	missense	c.1169	p.C390Y	1.000	NULL	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				146	0	0	152	29	16.0221
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				28	0	0	43	3	6.52174
SMG6	0	genome.wustl.edu	37	17	2203683	2203683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	17	2203683	2203683	G	A	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	missense	c.364	p.P122S	0.000	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				58	0	0	82	11	11.828
TNFAIP1	0	genome.wustl.edu	37	17	26669460	26669460	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	17	26669460	26669460	C	A	SNP	TNFAIP1	ENST00000226225	human	ensembl	74_37	+1	known	missense	c.706	p.Q236K	1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	TNFAIP1	HGNC	ENSG00000109079				15	0	0	24	2	7.69231
ASIC2	0	genome.wustl.edu	37	17	31618488	31618488	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	17	31618488	31618488	C	G	SNP	ASIC2	ENST00000225823	human	ensembl	74_37	-1	known	missense	c.646	p.E216Q	0.918	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC2	HGNC	ENSG00000108684				26	0	0	33	6	15.3846
SPPL2C	0	genome.wustl.edu	37	17	43922979	43922979	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	17	43922979	43922979	C	A	SNP	SPPL2C	ENST00000329196	human	ensembl	74_37	+1	known	missense	c.707	p.A236D	0.003	NULL	pfam_Peptidase_A22B_SPP,pfam_Protease-assoc_domain,smart_Preselin/SPP	-	no_errors	SPPL2C	HGNC	ENSG00000185294				47	0	0	49	10	16.9492
MINK1	0	genome.wustl.edu	37	17	4794768	4794768	+	Silent	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	17	4794768	4794768	G	A	SNP	MINK1	ENST00000355280	human	ensembl	74_37	+1	known	silent	c.1758	p.R586	1.000	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MINK1	HGNC	ENSG00000141503				20	0	0	30	4	11.7647
LRRC37A3	0	genome.wustl.edu	37	17	62857004	62857004	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	17	62857004	62857004	A	G	SNP	LRRC37A3	ENST00000319651	human	ensembl	74_37	-1	known	missense	c.3260	p.I1087T	0.040	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809				130	0	0	122	25	17.0068
SEPT9	0	genome.wustl.edu	37	17	75398336	75398336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	17	75398336	75398336	G	A	SNP	SEPT9	ENST00000427177	human	ensembl	74_37	+1	known	missense	c.272	p.R91Q	1.000	NULL	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	SEPT9	HGNC	ENSG00000184640				32	0	0	19	5	20.8333
GIPC1	0	genome.wustl.edu	37	19	14591450	14591450	+	Silent	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	19	14591450	14591450	G	A	SNP	GIPC1	ENST00000345425	human	ensembl	74_37	-1	known	silent	c.429	p.L143	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC1	HGNC	ENSG00000123159				61	0	0	65	9	12.1622
NCAN	0	genome.wustl.edu	37	19	19329874	19329874	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	19	19329874	19329874	G	A	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.224	p.R75Q	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				21	0	0	24	4	14.2857
ZNF14	0	genome.wustl.edu	37	19	19824904	19824904	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	19	19824904	19824904	G	A	SNP	ZNF14	ENST00000344099	human	ensembl	74_37	-1	known	nonsense	c.187	p.R63*	0.000	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF14	HGNC	ENSG00000105708				30	0	0	29	4	12.1212
ZNF676	0	genome.wustl.edu	37	19	22363376	22363376	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	19	22363376	22363376	A	C	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	missense	c.1143	p.N381K	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				36	0	0	28	3	9.67742
FCGBP	0	genome.wustl.edu	37	19	40366308	40366308	+	Silent	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	19	40366308	40366308	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	silent	c.13926	p.C4642	0.974	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				54	0	0	69	14	16.8675
CBLC	0	genome.wustl.edu	37	19	45296762	45296762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	19	45296762	45296762	G	A	SNP	CBLC	ENST00000270279	human	ensembl	74_37	+1	known	missense	c.1169	p.R390H	1.000	pfscan_Znf_RING	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273				11	0	0	17	5	22.7273
POLD1	0	genome.wustl.edu	37	19	50912857	50912857	+	Silent	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	19	50912857	50912857	C	T	SNP	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	silent	c.2088	p.S696	0.995	pfam_DNA-dir_DNA_pol_B_multi_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822				70	0	0	89	12	11.8812
ZNF548	0	genome.wustl.edu	37	19	57909885	57909885	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	19	57909885	57909885	G	A	SNP	ZNF548	ENST00000336128	human	ensembl	74_37	+1	known	missense	c.266	p.C89Y	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF548	HGNC	ENSG00000188785				40	0	0	41	14	25.4545
OR7D2	0	genome.wustl.edu	37	19	9297018	9297018	+	Silent	SNP	G	G	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	19	9297018	9297018	G	T	SNP	OR7D2	ENST00000344248	human	ensembl	74_37	+1	known	silent	c.561	p.L187	0.718	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D2	HGNC	ENSG00000188000				70	0	0	84	6	6.66667
TBC1D8	0	genome.wustl.edu	37	2	101646088	101646088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	2	101646088	101646088	G	A	SNP	TBC1D8	ENST00000409318	human	ensembl	74_37	-1	known	missense	c.2087	p.A696V	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634				19	0	0	25	5	16.6667
IL1R2	0	genome.wustl.edu	37	2	102644697	102644697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	2	102644697	102644697	C	T	SNP	IL1R2	ENST00000332549	human	ensembl	74_37	+1	known	missense	c.1040	p.T347M	0.492	pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1R2	HGNC	ENSG00000115590				27	0	0	40	5	11.1111
HOXD10	0	genome.wustl.edu	37	2	176981985	176981985	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	2	176981985	176981985	G	A	SNP	HOXD10	ENST00000249501	human	ensembl	74_37	+1	known	missense	c.424	p.E142K	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXD10	HGNC	ENSG00000128710				115	0	0	122	10	7.57576
PDE1A	0	genome.wustl.edu	37	2	183104879	183104879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	2	183104879	183104879	C	T	SNP	PDE1A	ENST00000456212	human	ensembl	74_37	-1	known	missense	c.356	p.R119Q	1.000	pfam_PDEase_N	pfam_PDEase_catalytic_dom,pfam_PDEase_N,superfamily_GRIP,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1A	HGNC	ENSG00000115252				38	0	0	41	3	6.81818
APOB	0	genome.wustl.edu	37	2	21227217	21227217	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	2	21227217	21227217	G	T	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.12011	p.P4004Q	0.988	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				30	0	0	44	6	12
APOB	0	genome.wustl.edu	37	2	21227262	21227262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	2	21227262	21227262	C	T	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.11966	p.R3989H	0.002	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				30	0	0	44	5	10.2041
SPAG16	0	genome.wustl.edu	37	2	215013968	215013968	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	2	215013968	215013968	T	G	SNP	SPAG16	ENST00000331683	human	ensembl	74_37	+1	known	missense	c.1698	p.N566K	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451				29	0	0	27	3	10
ZCCHC3	0	genome.wustl.edu	37	20	279293	279293	+	Silent	SNP	A	A	C			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	20	279293	279293	A	C	SNP	ZCCHC3	ENST00000382352	human	ensembl	74_37	+1	known	silent	c.1066	p.R356	1.000	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC3	HGNC	ENSG00000177764				65	0	0	62	5	7.46269
DDX27	0	genome.wustl.edu	37	20	47860176	47860176	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	20	47860176	47860176	G	C	SNP	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	missense	c.2308	p.E770Q	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				30	0	0	36	5	12.1951
C20orf195	0	genome.wustl.edu	37	20	62187885	62187885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	20	62187885	62187885	C	T	SNP	C20orf195	ENST00000370097	human	ensembl	74_37	+1	known	missense	c.869	p.T290M	0.974	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	C20orf195	HGNC	ENSG00000125531				72	0	0	110	18	14.0625
GAB4	0	genome.wustl.edu	37	22	17472781	17472781	+	Silent	SNP	T	T	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	22	17472781	17472781	T	G	SNP	GAB4	ENST00000400588	human	ensembl	74_37	-1	known	silent	c.460	p.R154	1.000	smart_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB4	HGNC	ENSG00000215568				126	0	0	138	13	8.60927
MEI1	0	genome.wustl.edu	37	22	42177636	42177636	+	RNA	SNP	A	A	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	22	42177636	42177636	A	G	SNP	MEI1	ENST00000476893	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MEI1	HGNC	ENSG00000167077				10	0	0	14	2	12.5
WNT7B	0	genome.wustl.edu	37	22	46318808	46318808	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	22	46318808	46318808	G	T	SNP	WNT7B	ENST00000339464	human	ensembl	74_37	-1	known	nonsense	c.978	p.C326*	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7B	HGNC	ENSG00000188064				86	0	0	72	12	14.2857
EPHB1	0	genome.wustl.edu	37	3	134670615	134670615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	3	134670615	134670615	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	missense	c.526	p.A176T	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				128	0	0	150	8	5.06329
TACR3	0	genome.wustl.edu	37	4	104640591	104640591	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	4	104640591	104640591	G	A	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	missense	c.242	p.P81L	0.997	prints_Neurokn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				46	0	0	65	8	10.9589
UVSSA	0	genome.wustl.edu	37	4	1374737	1374737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	4	1374737	1374737	C	T	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	missense	c.1822	p.R608C	0.987	NULL	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				43	0	0	49	4	7.54717
FBXW7	0	genome.wustl.edu	37	4	153247366	153247366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	4	153247366	153247366	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	missense	c.1436	p.R479Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				33	0	0	38	5	11.6279
WDR19	0	genome.wustl.edu	37	4	39254766	39254766	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	4	39254766	39254766	A	C	SNP	WDR19	ENST00000399820	human	ensembl	74_37	+1	known	missense	c.2730	p.R910S	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796				30	0	0	31	3	8.82353
DNAH5	0	genome.wustl.edu	37	5	13769145	13769145	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	5	13769145	13769145	G	C	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.9821	p.S3274C	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				105	0	0	104	13	11.1111
CTNNA1	0	genome.wustl.edu	37	5	138221962	138221962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	5	138221962	138221962	C	T	SNP	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	missense	c.1124	p.T375I	1.000	pfam_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115				58	0	0	67	4	5.6338
DDX4	0	genome.wustl.edu	37	5	55094378	55094378	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	5	55094378	55094378	G	A	SNP	DDX4	ENST00000505374	human	ensembl	74_37	+1	known	missense	c.1594	p.V532I	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX4	HGNC	ENSG00000152670				37	0	0	48	7	12.7273
HTR1A	0	genome.wustl.edu	37	5	63256939	63256939	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	5	63256939	63256939	G	T	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	missense	c.608	p.A203D	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				127	0	0	120	7	5.51181
HCRTR2	0	genome.wustl.edu	37	6	55145214	55145214	+	Silent	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	6	55145214	55145214	G	A	SNP	HCRTR2	ENST00000370862	human	ensembl	74_37	+1	known	silent	c.1077	p.A359	0.989	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	-	no_errors	HCRTR2	HGNC	ENSG00000137252				19	0	0	26	4	13.3333
WDR91	0	genome.wustl.edu	37	7	134896218	134896218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	7	134896218	134896218	G	A	SNP	WDR91	ENST00000354475	human	ensembl	74_37	-1	known	missense	c.37	p.R13W	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR91	HGNC	ENSG00000105875				28	0	0	23	2	8
SMARCD3	0	genome.wustl.edu	37	7	150936233	150936233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	7	150936233	150936233	G	A	SNP	SMARCD3	ENST00000262188	human	ensembl	74_37	-1	known	missense	c.1408	p.R470C	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD3	HGNC	ENSG00000082014				52	0	0	56	11	16.4179
HOXA1	0	genome.wustl.edu	37	7	27135441	27135441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	7	27135441	27135441	C	T	SNP	HOXA1	ENST00000343060	human	ensembl	74_37	-1	known	missense	c.91	p.D31N	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXA1	HGNC	ENSG00000105991				83	0	0	85	9	9.57447
HECW1	0	genome.wustl.edu	37	7	43484720	43484720	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	7	43484720	43484720	C	T	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	missense	c.1949	p.T650M	0.017	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				28	0	0	24	4	14.2857
ZNF479	0	genome.wustl.edu	37	7	57187985	57187985	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	7	57187985	57187985	T	G	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	missense	c.1137	p.K379N	0.959	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				22	0	0	12	4	25
HEPACAM2	0	genome.wustl.edu	37	7	92855746	92855746	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	7	92855746	92855746	G	C	SNP	HEPACAM2	ENST00000394468	human	ensembl	74_37	-1	known	missense	c.14	p.A5G	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	HEPACAM2	HGNC	ENSG00000188175				24	0	0	33	4	10.8108
ZNF696	0	genome.wustl.edu	37	8	144378347	144378347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	8	144378347	144378347	G	A	SNP	ZNF696	ENST00000330143	human	ensembl	74_37	+1	known	missense	c.502	p.V168M	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF696	HGNC	ENSG00000185730				17	0	0	20	4	16.6667
INVS	0	genome.wustl.edu	37	9	103059233	103059233	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	9	103059233	103059233	C	A	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	missense	c.2821	p.H941N	0.000	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				8	0	0	16	2	11.1111
EPB41L4B	0	genome.wustl.edu	37	9	111947796	111947796	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	9	111947796	111947796	G	T	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	nonsense	c.2391	p.C797*	1.000	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				25	0	0	29	2	6.45161
PALM2-AKAP2	0	genome.wustl.edu	37	9	112899719	112899719	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	9	112899719	112899719	C	A	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	nonsense	c.1895	p.S632*	0.000	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				58	0	0	80	7	8.04598
TTC16	0	genome.wustl.edu	37	9	130489637	130489637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	9	130489637	130489637	G	A	SNP	TTC16	ENST00000373289	human	ensembl	74_37	+1	known	missense	c.1657	p.E553K	0.000	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC16	HGNC	ENSG00000167094				14	0	0	15	3	16.6667
ST6GALNAC4	0	genome.wustl.edu	37	9	130674788	130674788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	9	130674788	130674788	C	T	SNP	ST6GALNAC4	ENST00000335791	human	ensembl	74_37	-1	known	missense	c.370	p.V124I	0.929	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC4	HGNC	ENSG00000136840				59	0	0	59	8	11.9403
SEC16A	0	genome.wustl.edu	37	9	139370905	139370905	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	9	139370905	139370905	G	T	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	nonsense	c.1163	p.S388*	0.329	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				21	0	0	20	2	9.09091
ELAVL2	0	genome.wustl.edu	37	9	23762098	23762098	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	9	23762098	23762098	G	C	SNP	ELAVL2	ENST00000380117	human	ensembl	74_37	-1	known	nonsense	c.135	p.Y45*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL2	HGNC	ENSG00000107105				64	0	0	52	9	14.7541
ELAVL2	0	genome.wustl.edu	37	9	23762120	23762120	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	9	23762120	23762120	T	G	SNP	ELAVL2	ENST00000380117	human	ensembl	74_37	-1	known	missense	c.113	p.K38T	1.000	tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL2	HGNC	ENSG00000107105				83	0	0	69	6	8
FBXO10	0	genome.wustl.edu	37	9	37521626	37521626	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	9	37521626	37521626	G	T	SNP	FBXO10	ENST00000432825	human	ensembl	74_37	-1	known	missense	c.2140	p.P714T	1.000	smart_Carb-bd_sugar_hydrolysis-dom	pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,pfscan_F-box_dom,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO10	HGNC	ENSG00000147912				11	0	0	17	3	15
DCAF12L1	0	genome.wustl.edu	37	X	125685743	125685743	+	Silent	SNP	G	G	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	X	125685743	125685743	G	A	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	silent	c.849	p.D283	0.889	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889				27	0	0	29	5	14.7059
OFD1	0	genome.wustl.edu	37	X	13781866	13781866	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	X	13781866	13781866	G	T	SNP	OFD1	ENST00000340096	human	ensembl	74_37	+1	known	missense	c.2491	p.A831S	0.274	NULL	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651				59	0	0	78	5	6.0241
FIGF	0	genome.wustl.edu	37	X	15402056	15402056	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	X	15402056	15402056	A	T	SNP	FIGF	ENST00000297904	human	ensembl	74_37	-1	known	missense	c.13	p.W5R	1.000	NULL	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	FIGF	HGNC	ENSG00000165197				19	0	0	12	5	29.4118
ST14	0	genome.wustl.edu	37	11	130079626	130079627	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	11	130079626	130079627	-	G	INS	ST14	ENST00000278742	human	ensembl	74_37	+1	known	frame_shift_ins	c.2476_2477	p.D828fs	1.000:1.000	pirsf_Peptidase_S1A_matripase,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Peptidase_S1A_matripase,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,pfam_SEA_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	ST14	HGNC	ENSG00000149418				54	0	0	69	12	14.8148
SOX9	0	genome.wustl.edu	37	17	70119088	70119089	+	Frame_Shift_Ins	INS	-	-	GT			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	17	70119088	70119089	-	GT	INS	SOX9	ENST00000245479	human	ensembl	74_37	+1	known	frame_shift_ins	c.660_661	p.H221fs	0.958:1.000	NULL	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX9	HGNC	ENSG00000125398				58	0	0	71	12	14.4578
SLC8A2	0	genome.wustl.edu	37	19	47935681	47935683	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	19	47935681	47935683	TCC	-	DEL	SLC8A2	ENST00000236877	human	ensembl	74_37	-1	known	in_frame_del	c.2132_2130	p.E710in_frame_del	1.000:1.000:1.000	tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160				77	0	0	94	6	6
CNOT3	0	genome.wustl.edu	37	19	54647756	54647757	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	19	54647756	54647757	-	A	INS	CNOT3	ENST00000221232	human	ensembl	74_37	+1	known	frame_shift_ins	c.273_274	p.V92fs	1.000:1.000	pfam_Not_N,pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038				59	0	0	78	9	10.3448
CD86	0	genome.wustl.edu	37	3	121828218	121828220	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8380-01A-11D-2340-08	TCGA-BR-8380-10A-01D-2341-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ccfe725-1cd6-41cc-9bd1-7b055fd04e20	1e4e8e97-c2ad-46a8-a939-f10d2b189716	3	121828218	121828220	GAA	-	DEL	CD86	ENST00000330540	human	ensembl	74_37	+1	known	in_frame_del	c.810_812	p.K274in_frame_del	0.001:0.004:0.006	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD86	HGNC	ENSG00000114013				49	0	0	63	7	10
