Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CHIA	0	genome.wustl.edu	37	1	111861744	111861744	+	Silent	SNP	C	C	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	111861744	111861744	C	A	SNP	CHIA	ENST00000343320	human	ensembl	74_37	+1	known	silent	c.918	p.I306	1.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIA	HGNC	ENSG00000134216				42	0	0	47	9	16.0714
TCHH	0	genome.wustl.edu	37	1	152084711	152084711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	152084711	152084711	G	A	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.982	p.R328C	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				51	0	0	77	10	11.4943
FLG2	0	genome.wustl.edu	37	1	152327388	152327388	+	Silent	SNP	G	G	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	152327388	152327388	G	T	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	silent	c.2874	p.S958	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				457	0	0	575	66	10.2964
TDRD10	0	genome.wustl.edu	37	1	154516513	154516513	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	154516513	154516513	G	T	SNP	TDRD10	ENST00000368480	human	ensembl	74_37	+1	known	missense	c.578	p.R193L	0.000	NULL	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239				151	0	0	166	10	5.68182
NOS1AP	0	genome.wustl.edu	37	1	162325084	162325084	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	162325084	162325084	C	T	SNP	NOS1AP	ENST00000361897	human	ensembl	74_37	+1	known	nonsense	c.703	p.R235*	1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929				95	0	0	131	11	7.74648
CROCCP3	0	genome.wustl.edu	37	1	16812113	16812113	+	RNA	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	16812113	16812113	G	A	SNP	CROCCP3	ENST00000263511	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CROCCP3	HGNC	ENSG00000080947				19	0	0	24	4	14.2857
CROCCP2	0	genome.wustl.edu	37	1	16946407	16946407	+	RNA	SNP	T	T	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	16946407	16946407	T	G	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				27	0	0	28	3	9.67742
CAPZB	0	genome.wustl.edu	37	1	19775381	19775381	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	19775381	19775381	A	C	SNP	CAPZB	ENST00000264203	human	ensembl	74_37	-1	known	missense	c.28	p.F10V	0.000	NULL	pfam_CapZ_beta,prints_CapZ_beta	-	no_errors	CAPZB	HGNC	ENSG00000077549				40	0	0	35	4	10.2564
NFASC	0	genome.wustl.edu	37	1	204951064	204951064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	204951064	204951064	C	T	SNP	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	missense	c.2386	p.P796S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				41	0	0	30	22	42.3077
KCNH1	0	genome.wustl.edu	37	1	211192417	211192417	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	211192417	211192417	T	C	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	missense	c.740	p.N247S	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473				87	0	0	102	7	6.42202
DISP1	0	genome.wustl.edu	37	1	223179252	223179252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	223179252	223179252	G	A	SNP	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	missense	c.4513	p.V1505M	0.965	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				70	0	0	85	8	8.60215
OBSCN	0	genome.wustl.edu	37	1	228467905	228467905	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	228467905	228467905	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.7689	p.P2563	0.340	pfam_Ig_I-set	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				56	0	0	75	4	5.06329
ARID1A	0	genome.wustl.edu	37	1	27107180	27107180	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	27107180	27107180	C	A	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.6791	p.S2264*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				109	0	0	143	11	7.14286
ROR1	0	genome.wustl.edu	37	1	64644038	64644038	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	64644038	64644038	T	G	SNP	ROR1	ENST00000371079	human	ensembl	74_37	+1	known	missense	c.2314	p.S772A	1.000	pirsf_Tyr_kinase_rcpt_ROR	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR1	HGNC	ENSG00000185483				81	0	0	93	5	5.10204
LRRC7	0	genome.wustl.edu	37	1	70493942	70493942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	70493942	70493942	C	T	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.1769	p.P590L	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				79	0	0	58	12	17.1429
LRRC7	0	genome.wustl.edu	37	1	70504683	70504683	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	1	70504683	70504683	C	A	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.3062	p.A1021D	0.993	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				41	0	0	44	6	12
TDRD1	0	genome.wustl.edu	37	10	115966034	115966034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	10	115966034	115966034	G	A	SNP	TDRD1	ENST00000251864	human	ensembl	74_37	+1	known	missense	c.1329	p.M443I	1.000	NULL	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627				51	0	0	50	6	10.7143
TCERG1L	0	genome.wustl.edu	37	10	132944801	132944801	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	10	132944801	132944801	G	A	SNP	TCERG1L	ENST00000368642	human	ensembl	74_37	-1	known	missense	c.1157	p.P386L	1.000	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1L	HGNC	ENSG00000176769				62	0	0	54	10	15.625
NCOA4	0	genome.wustl.edu	37	10	51579230	51579230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	10	51579230	51579230	C	T	SNP	NCOA4	ENST00000452682	human	ensembl	74_37	+1	known	missense	c.137	p.A46V	1.000	NULL	pfam_ARA70	-	no_errors	NCOA4	HGNC	ENSG00000138293				119	0	0	112	24	17.6471
CCAR1	0	genome.wustl.edu	37	10	70509365	70509365	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	10	70509365	70509365	G	A	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	silent	c.1041	p.E347	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				80	0	0	82	7	7.86517
NODAL	0	genome.wustl.edu	37	10	72192776	72192776	+	Silent	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	10	72192776	72192776	C	T	SNP	NODAL	ENST00000287139	human	ensembl	74_37	-1	known	silent	c.960	p.P320	0.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	NODAL	HGNC	ENSG00000156574				146	0	0	141	24	14.5455
PTEN	0	genome.wustl.edu	37	10	89624298	89624298	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	10	89624298	89624298	C	G	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	missense	c.72	p.D24E	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				71	0	0	73	5	6.41026
PIPSL	0	genome.wustl.edu	37	10	95719465	95719465	+	RNA	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	10	95719465	95719465	G	A	SNP	PIPSL	ENST00000480546	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.997	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764				25	0	0	40	7	14.8936
CARD16	0	genome.wustl.edu	37	11	104915338	104915338	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	104915338	104915338	C	T	SNP	CARD16	ENST00000375706	human	ensembl	74_37	-1	known	missense	c.55	p.E19K	0.000	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pfscan_CARD	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pfscan_CARD	-	no_errors	CARD16	HGNC	ENSG00000204397				325	0	0	279	30	9.70874
TSSC4	0	genome.wustl.edu	37	11	2424472	2424472	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	2424472	2424472	G	A	SNP	TSSC4	ENST00000333256	human	ensembl	74_37	+1	known	silent	c.609	p.Q203	1.000	NULL	NULL	-	no_errors	TSSC4	HGNC	ENSG00000184281				55	0	0	40	7	14.8936
FIBIN	0	genome.wustl.edu	37	11	27016359	27016359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	27016359	27016359	C	T	SNP	FIBIN	ENST00000318627	human	ensembl	74_37	+1	known	missense	c.286	p.R96C	0.971	NULL	NULL	-	no_errors	FIBIN	HGNC	ENSG00000176971				40	0	0	39	10	20.4082
ACP2	0	genome.wustl.edu	37	11	47264443	47264443	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	47264443	47264443	G	A	SNP	ACP2	ENST00000256997	human	ensembl	74_37	-1	known	silent	c.969	p.F323	0.997	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACP2	HGNC	ENSG00000134575				47	0	0	49	4	7.54717
OR8J3	0	genome.wustl.edu	37	11	55904988	55904988	+	Silent	SNP	G	G	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	55904988	55904988	G	T	SNP	OR8J3	ENST00000301529	human	ensembl	74_37	-1	known	silent	c.207	p.I69	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J3	HGNC	ENSG00000167822				124	0	0	128	15	10.4895
OR56B1	0	genome.wustl.edu	37	11	5758141	5758141	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	5758141	5758141	A	T	SNP	OR56B1	ENST00000317121	human	ensembl	74_37	+1	known	missense	c.395	p.Y132F	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR56B1	HGNC	ENSG00000181023				59	0	0	72	9	11.1111
OR5A1	0	genome.wustl.edu	37	11	59211548	59211548	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	59211548	59211548	G	T	SNP	OR5A1	ENST00000302030	human	ensembl	74_37	+1	known	missense	c.907	p.A303S	0.006	NULL	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5A1	HGNC	ENSG00000172320				157	1	0.632911	169	18	9.62567
TAF6L	0	genome.wustl.edu	37	11	62554020	62554020	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	62554020	62554020	C	G	SNP	TAF6L	ENST00000294168	human	ensembl	74_37	+1	known	missense	c.1121	p.A374G	0.998	NULL	pfam_TAF_TATA-bd,pfam_DUF1546,superfamily_Histone-fold,smart_TAF_TATA-bd	-	no_errors	TAF6L	HGNC	ENSG00000162227				27	0	0	25	8	24.2424
NRXN2	0	genome.wustl.edu	37	11	64434944	64434944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	64434944	64434944	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.1576	p.P526S	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				80	0	0	78	11	12.3596
MALAT1	0	genome.wustl.edu	37	11	65268614	65268614	+	RNA	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	65268614	65268614	C	T	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				58	0	0	54	6	10
RELA	0	genome.wustl.edu	37	11	65425949	65425949	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	65425949	65425949	G	A	SNP	RELA	ENST00000406246	human	ensembl	74_37	-1	known	missense	c.686	p.T229M	1.000	superfamily_Ig_E-set,smart_IPT	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NF_Rel_Dor	-	no_errors	RELA	HGNC	ENSG00000173039				37	0	0	22	5	18.5185
ARHGEF17	0	genome.wustl.edu	37	11	73022573	73022573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	73022573	73022573	G	A	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	missense	c.2890	p.A964T	0.736	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				98	0	0	96	7	6.79612
SYTL2	0	genome.wustl.edu	37	11	85407418	85407418	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	85407418	85407418	C	A	SNP	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	missense	c.5005	p.D1669Y	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501				81	0	0	87	7	7.44681
FAT3	0	genome.wustl.edu	37	11	92534929	92534929	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	11	92534929	92534929	T	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.8750	p.I2917K	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				101	0	0	99	6	5.71429
TCP11L2	0	genome.wustl.edu	37	12	106729908	106729908	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	106729908	106729908	G	A	SNP	TCP11L2	ENST00000299045	human	ensembl	74_37	+1	known	silent	c.1059	p.V353	1.000	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046				80	0	0	78	7	8.23529
TBX5	0	genome.wustl.edu	37	12	114793594	114793594	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	114793594	114793594	G	A	SNP	TBX5	ENST00000310346	human	ensembl	74_37	-1	known	missense	c.1300	p.P434S	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225				37	0	0	28	8	22.2222
ABCC9	0	genome.wustl.edu	37	12	22069960	22069960	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	22069960	22069960	T	G	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.484	p.I162L	0.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				147	0	0	167	19	10.2151
LINC00477	0	genome.wustl.edu	37	12	24737079	24737079	+	RNA	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	24737079	24737079	C	T	SNP	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				99	0	0	119	18	13.1387
LRRK2	0	genome.wustl.edu	37	12	40626149	40626149	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	40626149	40626149	A	T	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.311	p.D104V	0.991	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				72	0	0	70	6	7.89474
CCND2	0	genome.wustl.edu	37	12	4409052	4409052	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	4409052	4409052	G	T	SNP	CCND2	ENST00000261254	human	ensembl	74_37	+1	known	missense	c.747	p.Q249H	1.000	pfam_Cyclin_C-dom,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND2	HGNC	ENSG00000118971				84	0	0	58	12	17.1429
KMT2D	0	genome.wustl.edu	37	12	49425038	49425038	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	49425038	49425038	G	A	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	nonsense	c.13450	p.R4484*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				91	0	0	109	14	11.3821
ERBB3	0	genome.wustl.edu	37	12	56482393	56482393	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	56482393	56482393	A	C	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.941	p.K314T	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				203	0	0	219	32	12.749
LRP1	0	genome.wustl.edu	37	12	57605026	57605026	+	Silent	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	57605026	57605026	C	T	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	silent	c.12984	p.C4328	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				63	0	0	50	18	26.4706
USP5	0	genome.wustl.edu	37	12	6973267	6973267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	6973267	6973267	G	A	SNP	USP5	ENST00000229268	human	ensembl	74_37	+1	known	missense	c.2152	p.A718T	0.994	pfam_Peptidase_C19/C67,superfamily_UBA-like,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP5	HGNC	ENSG00000111667				142	0	0	140	16	10.2564
PEX5	0	genome.wustl.edu	37	12	7362389	7362389	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	7362389	7362389	G	A	SNP	PEX5	ENST00000434354	human	ensembl	74_37	+1	known	silent	c.1716	p.R572	0.998	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5	HGNC	ENSG00000139197				66	0	0	73	4	5.19481
PPFIA2	0	genome.wustl.edu	37	12	81732996	81732996	+	Silent	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	12	81732996	81732996	C	T	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	silent	c.2511	p.L837	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220				130	0	0	129	14	9.79021
LIG4	0	genome.wustl.edu	37	13	108861005	108861005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	13	108861005	108861005	C	T	SNP	LIG4	ENST00000356922	human	ensembl	74_37	-1	known	missense	c.2612	p.R871H	0.908	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_IV,pfam_BRCT_dom,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG4	HGNC	ENSG00000174405				83	0	0	78	9	10.3448
SLITRK6	0	genome.wustl.edu	37	13	86370491	86370491	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	13	86370491	86370491	T	A	SNP	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	missense	c.153	p.K51N	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564				141	0	0	204	11	5.11628
SLITRK5	0	genome.wustl.edu	37	13	88328927	88328927	+	Silent	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	13	88328927	88328927	C	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	silent	c.1284	p.D428	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				52	0	0	60	11	15.493
GPR132	0	genome.wustl.edu	37	14	105517676	105517676	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	14	105517676	105517676	G	A	SNP	GPR132	ENST00000329797	human	ensembl	74_37	-1	known	silent	c.798	p.A266	0.000	pfam_GPCR_Rhodpsn,prints_G2A_lysphc_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_G2A_lysphc_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR132	HGNC	ENSG00000183484				71	0	0	61	4	6.15385
DCAF11	0	genome.wustl.edu	37	14	24587663	24587663	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	14	24587663	24587663	G	A	SNP	DCAF11	ENST00000446197	human	ensembl	74_37	+1	known	missense	c.644	p.R215H	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897				106	0	0	84	14	14.2857
TRIM9	0	genome.wustl.edu	37	14	51561035	51561035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	14	51561035	51561035	C	T	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.623	p.R208H	1.000	smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				38	0	0	42	7	14.2857
NID2	0	genome.wustl.edu	37	14	52535485	52535485	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	14	52535485	52535485	G	A	SNP	NID2	ENST00000216286	human	ensembl	74_37	-1	known	silent	c.228	p.Y76	0.995	NULL	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID2	HGNC	ENSG00000087303				75	0	0	58	11	15.942
ABCD4	0	genome.wustl.edu	37	14	74764652	74764652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	14	74764652	74764652	G	A	SNP	ABCD4	ENST00000356924	human	ensembl	74_37	-1	known	missense	c.406	p.R136W	0.987	pfam_ABC_Peroxi_TM,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCD4	HGNC	ENSG00000119688				47	0	0	36	6	14.2857
GABRG3	0	genome.wustl.edu	37	15	27271924	27271924	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	15	27271924	27271924	G	A	SNP	GABRG3	ENST00000333743	human	ensembl	74_37	+1	known	missense	c.226	p.D76N	0.997	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256				21	0	0	20	6	23.0769
APBA2	0	genome.wustl.edu	37	15	29346438	29346438	+	Silent	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	15	29346438	29346438	C	T	SNP	APBA2	ENST00000558259	human	ensembl	74_37	+1	known	silent	c.351	p.N117	0.991	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA2	HGNC	ENSG00000034053				100	0	0	104	18	14.7541
INO80	0	genome.wustl.edu	37	15	41275164	41275164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	15	41275164	41275164	C	T	SNP	INO80	ENST00000361937	human	ensembl	74_37	-1	known	missense	c.4349	p.R1450Q	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908				89	0	0	87	9	9.375
RAB27A	0	genome.wustl.edu	37	15	55516100	55516100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	15	55516100	55516100	C	T	SNP	RAB27A	ENST00000336787	human	ensembl	74_37	-1	known	missense	c.454	p.A152T	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB27A	HGNC	ENSG00000069974				208	0	0	235	26	9.96169
MPV17L	0	genome.wustl.edu	37	16	15501819	15501819	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	16	15501819	15501819	A	G	SNP	MPV17L	ENST00000287594	human	ensembl	74_37	+1	known	missense	c.370	p.M124V	0.916	NULL	NULL	-	no_errors	MPV17L	HGNC	ENSG00000156968				69	0	0	71	8	10.1266
SCNN1G	0	genome.wustl.edu	37	16	23221166	23221166	+	Silent	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	16	23221166	23221166	C	T	SNP	SCNN1G	ENST00000300061	human	ensembl	74_37	+1	known	silent	c.1173	p.L391	1.000	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828				55	0	0	61	5	7.57576
MEFV	0	genome.wustl.edu	37	16	3293377	3293377	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	16	3293377	3293377	C	T	SNP	MEFV	ENST00000219596	human	ensembl	74_37	-1	known	missense	c.2110	p.V704I	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_DEATH-like_dom,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313				129	0	0	112	12	9.67742
IRX5	0	genome.wustl.edu	37	16	54966567	54966567	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	16	54966567	54966567	G	A	SNP	IRX5	ENST00000394636	human	ensembl	74_37	+1	known	missense	c.407	p.R136H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX5	HGNC	ENSG00000176842				133	0	0	97	22	18.4874
CHST5	0	genome.wustl.edu	37	16	75563598	75563598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	16	75563598	75563598	C	T	SNP	CHST5	ENST00000541075	human	ensembl	74_37	-1	known	missense	c.703	p.V235M	0.996	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST5	HGNC	ENSG00000135702				68	0	0	89	11	11
DNAH9	0	genome.wustl.edu	37	17	11583146	11583146	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	17	11583146	11583146	C	A	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.3426	p.F1142L	0.689	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				136	0	0	145	9	5.84416
POLDIP2	0	genome.wustl.edu	37	17	26680025	26680025	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	17	26680025	26680025	C	T	SNP	POLDIP2	ENST00000540200	human	ensembl	74_37	-1	known	missense	c.532	p.E178K	1.000	superfamily_Hemimethylated_DNA-bd_dom	pfam_ApaG_domain,pfam_Hemimethylated_DNA-bd_dom,superfamily_ApaG_domain,superfamily_Hemimethylated_DNA-bd_dom,pfscan_ApaG_domain	-	no_errors	POLDIP2	HGNC	ENSG00000004142				29	0	0	20	2	9.09091
GIT1	0	genome.wustl.edu	37	17	27903635	27903635	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	17	27903635	27903635	G	A	SNP	GIT1	ENST00000394869	human	ensembl	74_37	-1	known	silent	c.1312	p.L438	1.000	NULL	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT1	HGNC	ENSG00000108262				61	0	0	54	10	15.625
ERBB2	0	genome.wustl.edu	37	17	37880261	37880261	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	17	37880261	37880261	G	T	SNP	ERBB2	ENST00000269571	human	ensembl	74_37	+1	known	missense	c.2305	p.D769Y	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736				34	0	0	32	5	13.5135
STAT3	0	genome.wustl.edu	37	17	40474481	40474481	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	17	40474481	40474481	G	A	SNP	STAT3	ENST00000264657	human	ensembl	74_37	-1	known	silent	c.1920	p.Y640	0.998	pfam_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT3	HGNC	ENSG00000168610				184	0	0	201	12	5.6338
ABCC3	0	genome.wustl.edu	37	17	48753410	48753410	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	17	48753410	48753410	C	T	SNP	ABCC3	ENST00000285238	human	ensembl	74_37	+1	known	missense	c.3026	p.S1009F	0.001	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846				45	0	0	42	5	10.6383
SKA2	0	genome.wustl.edu	37	17	57232423	57232423	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	17	57232423	57232423	T	C	SNP	SKA2	ENST00000583976	human	ensembl	74_37	-1	known	missense	c.22	p.N8D	0.012	NULL	NULL	-	no_errors	SKA2	HGNC	ENSG00000182628				125	0	0	137	29	17.4699
LOC146880	0	genome.wustl.edu	37	17	62758085	62758085	+	RNA	SNP	A	A	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	17	62758085	62758085	A	C	SNP	LOC146880	ENST00000400873	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	hsa-mir-6080	miRBase	ENSG00000215769				100	0	0	104	7	6.30631
CEP112	0	genome.wustl.edu	37	17	64092380	64092380	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	17	64092380	64092380	G	A	SNP	CEP112	ENST00000392769	human	ensembl	74_37	-1	known	missense	c.757	p.R253C	0.999	NULL	superfamily_t-SNARE	-	no_errors	CEP112	HGNC	ENSG00000154240				111	0	0	101	6	5.60748
AATK	0	genome.wustl.edu	37	17	79094804	79094804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	17	79094804	79094804	G	A	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	missense	c.2932	p.R978W	0.005	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409				15	0	0	15	6	28.5714
NFATC1	0	genome.wustl.edu	37	18	77170747	77170747	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	18	77170747	77170747	A	C	SNP	NFATC1	ENST00000427363	human	ensembl	74_37	+1	known	missense	c.472	p.S158R	0.868	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC1	HGNC	ENSG00000131196				65	0	0	55	7	11.2903
OR7A10	0	genome.wustl.edu	37	19	14952325	14952325	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	19	14952325	14952325	C	T	SNP	OR7A10	ENST00000248058	human	ensembl	74_37	-1	known	missense	c.365	p.R122Q	0.852	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7A10	HGNC	ENSG00000127515				79	0	0	67	13	16.25
RAB8A	0	genome.wustl.edu	37	19	16243123	16243123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	19	16243123	16243123	G	A	SNP	RAB8A	ENST00000586682	human	ensembl	74_37	+1	novel	missense	c.613	p.A205T	0.988	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB8A	HGNC	ENSG00000167461				24	0	0	26	3	10.3448
JAK3	0	genome.wustl.edu	37	19	17951085	17951085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	19	17951085	17951085	C	T	SNP	JAK3	ENST00000458235	human	ensembl	74_37	-1	known	missense	c.1208	p.R403H	0.961	smart_SH2,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639				38	0	0	35	5	12.5
KMT2B	0	genome.wustl.edu	37	19	36210704	36210704	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	19	36210704	36210704	G	A	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.455	p.R152Q	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				208	0	0	167	23	12.1053
ZFP30	0	genome.wustl.edu	37	19	38126845	38126845	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	19	38126845	38126845	G	A	SNP	ZFP30	ENST00000351218	human	ensembl	74_37	-1	known	silent	c.597	p.A199	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP30	HGNC	ENSG00000120784				136	0	0	124	10	7.46269
ENSG00000255730	0	genome.wustl.edu	37	19	41916731	41916731	+	RNA	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	19	41916731	41916731	G	A	SNP	ENSG00000255730	ENST00000604424	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTC-435M10.3	Clone_based_vega_gene	ENSG00000255730				108	0	0	123	13	9.55882
RRAS	0	genome.wustl.edu	37	19	50140101	50140101	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	19	50140101	50140101	G	A	SNP	RRAS	ENST00000246792	human	ensembl	74_37	-1	known	silent	c.324	p.F108	0.767	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RRAS	HGNC	ENSG00000126458				116	0	0	90	8	8.16327
DUS3L	0	genome.wustl.edu	37	19	5789320	5789320	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	19	5789320	5789320	G	A	SNP	DUS3L	ENST00000590110	human	ensembl	74_37	-1	known	missense	c.596	p.P199L	0.001	NULL	NULL	-	no_errors	DUS3L	HGNC	ENSG00000141994				30	0	0	32	5	13.5135
ANAPC1	0	genome.wustl.edu	37	2	112566679	112566679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	2	112566679	112566679	C	T	SNP	ANAPC1	ENST00000341068	human	ensembl	74_37	-1	known	missense	c.3677	p.R1226Q	1.000	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107				97	0	0	111	7	5.9322
FBLN7	0	genome.wustl.edu	37	2	112940369	112940369	+	Silent	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	2	112940369	112940369	C	T	SNP	FBLN7	ENST00000331203	human	ensembl	74_37	+1	known	silent	c.672	p.D224	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	FBLN7	HGNC	ENSG00000144152				73	0	0	70	4	5.40541
WDSUB1	0	genome.wustl.edu	37	2	160128292	160128292	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	2	160128292	160128292	A	G	SNP	WDSUB1	ENST00000359774	human	ensembl	74_37	-1	known	missense	c.691	p.Y231H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Ubox_domain,pfam_SAM_2,pfam_SAM_type1,pfam_Pointed_dom,superfamily_WD40_repeat_dom,superfamily_SAM/pointed,smart_WD40_repeat,smart_SAM,smart_Ubox_domain,pfscan_SAM,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDSUB1	HGNC	ENSG00000196151				35	0	0	31	4	11.4286
ZDBF2	0	genome.wustl.edu	37	2	207170039	207170039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	2	207170039	207170039	C	T	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.787	p.R263C	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				21	0	0	15	3	16.6667
ADAM23	0	genome.wustl.edu	37	2	207413054	207413054	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	2	207413054	207413054	G	A	SNP	ADAM23	ENST00000264377	human	ensembl	74_37	+1	known	silent	c.843	p.L281	1.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948				71	0	0	81	10	10.989
SLC30A3	0	genome.wustl.edu	37	2	27481713	27481713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	2	27481713	27481713	G	A	SNP	SLC30A3	ENST00000233535	human	ensembl	74_37	-1	known	missense	c.185	p.P62L	0.000	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A3	HGNC	ENSG00000115194				57	0	0	32	13	28.8889
FSHR	0	genome.wustl.edu	37	2	49195873	49195873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	2	49195873	49195873	C	T	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.818	p.S273N	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				67	0	0	64	19	22.8916
TET3	0	genome.wustl.edu	37	2	74300717	74300717	+	Silent	SNP	T	T	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	2	74300717	74300717	T	C	SNP	TET3	ENST00000409262	human	ensembl	74_37	+1	known	silent	c.2131	p.L711	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605				21	0	0	21	3	12.5
FLRT3	0	genome.wustl.edu	37	20	14306206	14306206	+	Silent	SNP	T	T	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	20	14306206	14306206	T	G	SNP	FLRT3	ENST00000341420	human	ensembl	74_37	-1	known	silent	c.1947	p.S649	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848				143	0	0	174	17	8.90052
LBP	0	genome.wustl.edu	37	20	36999964	36999964	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	20	36999964	36999964	A	G	SNP	LBP	ENST00000217407	human	ensembl	74_37	+1	known	missense	c.1258	p.N420D	0.972	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	LBP	HGNC	ENSG00000129988				29	0	0	31	4	11.4286
SLC32A1	0	genome.wustl.edu	37	20	37353478	37353478	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	20	37353478	37353478	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	silent	c.111	p.T37	0.708	NULL	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				36	0	0	52	7	11.8644
CHGB	0	genome.wustl.edu	37	20	5903072	5903072	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	20	5903072	5903072	A	C	SNP	CHGB	ENST00000378961	human	ensembl	74_37	+1	known	missense	c.282	p.E94D	0.007	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199				55	0	0	64	8	11.1111
MCM8	0	genome.wustl.edu	37	20	5948582	5948582	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	20	5948582	5948582	G	A	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	silent	c.1134	p.K378	0.067	smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				100	0	0	119	13	9.84848
DIP2A	0	genome.wustl.edu	37	21	47918694	47918694	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	21	47918694	47918694	G	A	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	silent	c.603	p.P201	0.202	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305				77	0	0	71	6	7.79221
EP300	0	genome.wustl.edu	37	22	41566511	41566511	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	22	41566511	41566511	T	G	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.4388	p.L1463R	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				80	0	0	79	6	7.05882
MLC1	0	genome.wustl.edu	37	22	50515884	50515884	+	Silent	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	22	50515884	50515884	C	T	SNP	MLC1	ENST00000311597	human	ensembl	74_37	-1	known	silent	c.471	p.A157	0.049	NULL	NULL	-	no_errors	MLC1	HGNC	ENSG00000100427				49	0	0	46	5	9.80392
NUP210	0	genome.wustl.edu	37	3	13395089	13395089	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	3	13395089	13395089	C	G	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	missense	c.2593	p.E865Q	0.997	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				65	0	0	67	8	10.6667
PIK3CA	0	genome.wustl.edu	37	3	178916639	178916639	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	3	178916639	178916639	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.26	p.E9G	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				76	0	0	60	10	14.2857
MCF2L2	0	genome.wustl.edu	37	3	182925454	182925454	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	3	182925454	182925454	C	T	SNP	MCF2L2	ENST00000328913	human	ensembl	74_37	-1	known	missense	c.2654	p.R885Q	0.913	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524				114	1	0.869565	108	19	14.9606
LINC00969	0	genome.wustl.edu	37	3	195391115	195391115	+	RNA	SNP	T	T	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	3	195391115	195391115	T	C	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				24	0	0	20	3	13.0435
CNTN4	0	genome.wustl.edu	37	3	2613203	2613203	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	3	2613203	2613203	G	A	SNP	CNTN4	ENST00000397461	human	ensembl	74_37	+1	known	missense	c.16	p.E6K	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN4	HGNC	ENSG00000144619				49	0	0	50	11	18.0328
NEK10	0	genome.wustl.edu	37	3	27152780	27152780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	3	27152780	27152780	G	A	SNP	NEK10	ENST00000383771	human	ensembl	74_37	-1	known	missense	c.1408	p.H470Y	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK10	HGNC	ENSG00000163491				39	0	0	45	9	16.6667
DCLK3	0	genome.wustl.edu	37	3	36779379	36779379	+	Silent	SNP	T	T	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	3	36779379	36779379	T	G	SNP	DCLK3	ENST00000416516	human	ensembl	74_37	-1	known	silent	c.772	p.R258	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK3	HGNC	ENSG00000163673				135	1	0.735294	157	17	9.77011
IL17RD	0	genome.wustl.edu	37	3	57136585	57136585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	3	57136585	57136585	C	T	SNP	IL17RD	ENST00000296318	human	ensembl	74_37	-1	known	missense	c.901	p.V301M	0.971	NULL	pfam_SEFIR,superfamily_TIR_dom	-	no_errors	IL17RD	HGNC	ENSG00000144730				41	0	0	40	4	9.09091
PPARGC1A	0	genome.wustl.edu	37	4	23803389	23803389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	4	23803389	23803389	G	A	SNP	PPARGC1A	ENST00000264867	human	ensembl	74_37	-1	known	missense	c.2257	p.R753C	1.000	pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819				60	0	0	50	6	10.7143
LPHN3	0	genome.wustl.edu	37	4	62903554	62903554	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	4	62903554	62903554	C	T	SNP	LPHN3	ENST00000507625	human	ensembl	74_37	+1	known	missense	c.3670	p.R1224C	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471				82	0	0	76	7	8.43373
TECRL	0	genome.wustl.edu	37	4	65188413	65188413	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	4	65188413	65188413	C	T	SNP	TECRL	ENST00000381210	human	ensembl	74_37	-1	known	nonsense	c.429	p.W143*	1.000	NULL	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECRL	HGNC	ENSG00000205678				59	0	0	45	6	11.7647
PCDHB4	0	genome.wustl.edu	37	5	140501880	140501880	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	5	140501880	140501880	G	A	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	silent	c.300	p.P100	0.006	pfam_Cadherin_N	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818				59	0	0	72	9	11.1111
MED7	0	genome.wustl.edu	37	5	156565878	156565878	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	5	156565878	156565878	T	C	SNP	MED7	ENST00000286317	human	ensembl	74_37	-1	known	missense	c.565	p.M189V	0.999	NULL	pfam_Mediatior_Med7	-	no_errors	MED7	HGNC	ENSG00000155868				122	0	0	105	22	17.3228
GABRA1	0	genome.wustl.edu	37	5	161317942	161317942	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	5	161317942	161317942	A	G	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	missense	c.742	p.R248G	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				91	0	0	78	6	7.14286
FGFR4	0	genome.wustl.edu	37	5	176523169	176523169	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	5	176523169	176523169	A	G	SNP	FGFR4	ENST00000292408	human	ensembl	74_37	+1	known	missense	c.1933	p.K645E	1.000	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR4	HGNC	ENSG00000160867				46	0	0	72	9	11.1111
PRDM9	0	genome.wustl.edu	37	5	23524471	23524471	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	5	23524471	23524471	G	C	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.979	p.E327Q	0.999	pfscan_SET_dom	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				72	0	0	58	7	10.7692
RXFP3	0	genome.wustl.edu	37	5	33937051	33937051	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	5	33937051	33937051	G	T	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	missense	c.206	p.G69V	0.006	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				61	0	0	81	14	14.7368
OXCT1	0	genome.wustl.edu	37	5	41762218	41762218	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	5	41762218	41762218	C	T	SNP	OXCT1	ENST00000196371	human	ensembl	74_37	-1	known	missense	c.1333	p.A445T	1.000	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720				146	0	0	152	27	15.0838
MCTP1	0	genome.wustl.edu	37	5	94224655	94224655	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	5	94224655	94224655	T	C	SNP	MCTP1	ENST00000515393	human	ensembl	74_37	-1	known	missense	c.1862	p.N621S	1.000	NULL	pfam_C2_dom,pfam_PRibTrfase_C,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_C2_dom	-	no_errors	MCTP1	HGNC	ENSG00000175471				89	0	0	81	12	12.9032
GPR6	0	genome.wustl.edu	37	6	110300581	110300581	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	6	110300581	110300581	A	G	SNP	GPR6	ENST00000414000	human	ensembl	74_37	+1	known	missense	c.311	p.E104G	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR6,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn	-	no_errors	GPR6	HGNC	ENSG00000146360				120	0	0	121	23	15.9722
ENPP1	0	genome.wustl.edu	37	6	132176074	132176074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	6	132176074	132176074	C	T	SNP	ENPP1	ENST00000360971	human	ensembl	74_37	+1	known	missense	c.626	p.T209M	0.000	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594				69	0	0	73	5	6.41026
OR2B2	0	genome.wustl.edu	37	6	27879418	27879418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	6	27879418	27879418	C	T	SNP	OR2B2	ENST00000303324	human	ensembl	74_37	-1	known	missense	c.680	p.R227K	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B2	HGNC	ENSG00000168131				91	0	0	98	17	14.7826
OR2B2	0	genome.wustl.edu	37	6	27879505	27879505	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	6	27879505	27879505	T	G	SNP	OR2B2	ENST00000303324	human	ensembl	74_37	-1	known	missense	c.593	p.E198A	0.149	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B2	HGNC	ENSG00000168131				109	0	0	96	11	10.2804
ZNF311	0	genome.wustl.edu	37	6	28963041	28963041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	6	28963041	28963041	C	T	SNP	ZNF311	ENST00000377179	human	ensembl	74_37	-1	known	missense	c.1738	p.E580K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF311	HGNC	ENSG00000197935				89	0	0	99	6	5.71429
DNAH8	0	genome.wustl.edu	37	6	38810483	38810483	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	6	38810483	38810483	T	G	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.3998	p.L1333W	0.985	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				75	0	0	80	8	9.09091
RRAGD	0	genome.wustl.edu	37	6	90097256	90097256	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	6	90097256	90097256	T	C	SNP	RRAGD	ENST00000369415	human	ensembl	74_37	-1	known	missense	c.202	p.M68V	1.000	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	-	no_errors	RRAGD	HGNC	ENSG00000025039				331	0	0	348	46	11.6751
MDN1	0	genome.wustl.edu	37	6	90428148	90428148	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	6	90428148	90428148	G	C	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.6520	p.L2174V	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				79	0	0	95	6	5.94059
MUC17	0	genome.wustl.edu	37	7	100684303	100684303	+	Silent	SNP	T	T	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	7	100684303	100684303	T	G	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	silent	c.9606	p.T3202	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				512	0	0	478	63	11.6451
CAV1	0	genome.wustl.edu	37	7	116166604	116166604	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	7	116166604	116166604	G	A	SNP	CAV1	ENST00000341049	human	ensembl	74_37	+1	known	missense	c.56	p.R19Q	1.000	NULL	pfam_Caveolin	-	no_errors	CAV1	HGNC	ENSG00000105974				65	0	0	71	6	7.79221
ANKRD7	0	genome.wustl.edu	37	7	117876121	117876121	+	Silent	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	7	117876121	117876121	C	T	SNP	ANKRD7	ENST00000357099	human	ensembl	74_37	+1	known	silent	c.555	p.A185	0.012	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD7	HGNC	ENSG00000106013				72	0	0	90	11	10.8911
CPA4	0	genome.wustl.edu	37	7	129962450	129962450	+	Silent	SNP	C	C	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	7	129962450	129962450	C	G	SNP	CPA4	ENST00000222482	human	ensembl	74_37	+1	known	silent	c.1200	p.P400	0.946	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA4	HGNC	ENSG00000128510				136	0	0	165	9	5.17241
EXOC4	0	genome.wustl.edu	37	7	132990651	132990651	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	7	132990651	132990651	G	A	SNP	EXOC4	ENST00000253861	human	ensembl	74_37	+1	known	silent	c.492	p.L164	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558				62	0	0	64	7	9.85915
CHPF2	0	genome.wustl.edu	37	7	150932532	150932532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	7	150932532	150932532	G	A	SNP	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	missense	c.662	p.R221Q	1.000	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100				118	0	0	131	10	7.0922
RAPGEF5	0	genome.wustl.edu	37	7	22197496	22197496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	7	22197496	22197496	C	T	SNP	RAPGEF5	ENST00000344041	human	ensembl	74_37	-1	known	missense	c.1075	p.D359N	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237				36	0	0	47	7	12.963
EIF3B	0	genome.wustl.edu	37	7	2402282	2402282	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	7	2402282	2402282	A	G	SNP	EIF3B	ENST00000360876	human	ensembl	74_37	+1	known	missense	c.695	p.Y232C	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_EIF3B,pfscan_RRM_dom	pfam_TIF_beta_prop-like,pfam_RRM_dom,smart_RRM_dom,pirsf_EIF3B,pfscan_RRM_dom	-	no_errors	EIF3B	HGNC	ENSG00000106263				71	0	0	86	6	6.52174
CREB5	0	genome.wustl.edu	37	7	28857755	28857755	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	7	28857755	28857755	G	T	SNP	CREB5	ENST00000357727	human	ensembl	74_37	+1	known	missense	c.1322	p.C441F	1.000	pirsf_TF_cAMP-dep	pfam_bZIP,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	CREB5	HGNC	ENSG00000146592				96	0	0	106	8	7.01754
PRKAR1B	0	genome.wustl.edu	37	7	635929	635929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	7	635929	635929	C	T	SNP	PRKAR1B	ENST00000360274	human	ensembl	74_37	-1	known	missense	c.562	p.G188R	0.174	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1B	HGNC	ENSG00000188191				55	0	0	52	5	8.77193
COL22A1	0	genome.wustl.edu	37	8	139833571	139833571	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	8	139833571	139833571	G	A	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	silent	c.1053	p.F351	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				146	0	0	121	22	15.3846
MSR1	0	genome.wustl.edu	37	8	15978038	15978038	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	8	15978038	15978038	A	T	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	missense	c.1111	p.W371R	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				115	0	0	151	12	7.36196
MIR320A	0	genome.wustl.edu	37	8	22102541	22102541	+	RNA	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	8	22102541	22102541	C	T	SNP	MIR320A	ENST00000385302	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR320A	HGNC	ENSG00000208037				66	0	0	98	24	19.6721
SNTG1	0	genome.wustl.edu	37	8	51449257	51449257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	8	51449257	51449257	C	T	SNP	SNTG1	ENST00000518864	human	ensembl	74_37	+1	known	missense	c.569	p.S190L	0.983	smart_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481				133	0	0	164	28	14.5833
SLC26A7	0	genome.wustl.edu	37	8	92330586	92330586	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	8	92330586	92330586	C	A	SNP	SLC26A7	ENST00000309536	human	ensembl	74_37	+1	known	missense	c.620	p.S207Y	1.000	pfam_Sulph_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A7	HGNC	ENSG00000147606				113	0	0	120	9	6.97674
KCNS2	0	genome.wustl.edu	37	8	99440584	99440584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	8	99440584	99440584	G	A	SNP	KCNS2	ENST00000287042	human	ensembl	74_37	+1	known	missense	c.377	p.R126H	1.000	smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv2	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486				77	0	0	76	5	6.17284
ASTN2	0	genome.wustl.edu	37	9	119976958	119976958	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	9	119976958	119976958	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.694	p.R232C	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				39	0	0	44	7	13.7255
SEC16A	0	genome.wustl.edu	37	9	139336112	139336112	+	RNA	SNP	C	C	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	9	139336112	139336112	C	A	SNP	SEC16A	ENST00000467838	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEC16A	HGNC	ENSG00000148396				14	0	0	15	3	16.6667
SEC16A	0	genome.wustl.edu	37	9	139369132	139369132	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	9	139369132	139369132	T	C	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	missense	c.2936	p.N979S	0.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				33	0	0	42	7	14.2857
SH3GL2	0	genome.wustl.edu	37	9	17795588	17795588	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	9	17795588	17795588	A	T	SNP	SH3GL2	ENST00000380607	human	ensembl	74_37	+1	known	missense	c.906	p.E302D	0.995	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,pfam_BAR_dom-cont,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3GL2	HGNC	ENSG00000107295				44	0	0	37	8	17.7778
DDX58	0	genome.wustl.edu	37	9	32457294	32457294	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	9	32457294	32457294	G	C	SNP	DDX58	ENST00000379883	human	ensembl	74_37	-1	known	missense	c.2604	p.N868K	0.011	pfam_RIG-I_C-RD	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201				105	0	0	126	13	9.35252
DNAJB5	0	genome.wustl.edu	37	9	34993304	34993304	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	9	34993304	34993304	G	A	SNP	DNAJB5	ENST00000454002	human	ensembl	74_37	+1	known	missense	c.290	p.R97Q	1.000	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB5	HGNC	ENSG00000137094				129	0	0	123	17	12.1429
NTRK2	0	genome.wustl.edu	37	9	87342847	87342847	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	9	87342847	87342847	T	A	SNP	NTRK2	ENST00000277120	human	ensembl	74_37	+1	known	missense	c.1132	p.F378I	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053				55	0	0	71	4	5.33333
COL4A6	0	genome.wustl.edu	37	X	107412792	107412792	+	Silent	SNP	T	T	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	X	107412792	107412792	T	C	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	silent	c.3627	p.K1209	0.939	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565				31	0	0	18	8	30.7692
ZNF280C	0	genome.wustl.edu	37	X	129339386	129339386	+	Silent	SNP	G	G	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	X	129339386	129339386	G	T	SNP	ZNF280C	ENST00000370978	human	ensembl	74_37	-1	known	silent	c.2046	p.G682	1.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF280C	HGNC	ENSG00000056277				28	0	0	21	10	32.2581
ASMTL	0	genome.wustl.edu	37	X	1522378	1522378	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	X	1522378	1522378	G	A	SNP	ASMTL	ENST00000381317	human	ensembl	74_37	-1	known	silent	c.1650	p.A550	0.034	pfam_O_MeTrfase_2	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093				53	0	0	61	9	12.8571
MXRA5	0	genome.wustl.edu	37	X	3227994	3227994	+	Silent	SNP	G	G	A			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	X	3227994	3227994	G	A	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.8250	p.T2750	0.000	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				37	0	0	28	16	36.3636
GRIPAP1	0	genome.wustl.edu	37	X	48847497	48847497	+	Silent	SNP	T	T	C			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	X	48847497	48847497	T	C	SNP	GRIPAP1	ENST00000376441	human	ensembl	74_37	-1	known	silent	c.483	p.E161	0.930	NULL	superfamily_Prefoldin	-	no_errors	GRIPAP1	HGNC	ENSG00000068400				23	0	0	25	3	10.7143
CLCN5	0	genome.wustl.edu	37	X	49855541	49855541	+	Silent	SNP	C	C	T			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	X	49855541	49855541	C	T	SNP	CLCN5	ENST00000376088	human	ensembl	74_37	+1	known	silent	c.2358	p.N786	0.960	pfam_CBS_dom,smart_CBS_dom	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-5	-	no_errors	CLCN5	HGNC	ENSG00000171365				14	0	0	19	3	13.6364
ARID1B	0	genome.wustl.edu	37	6	157100396	157100397	+	In_Frame_Ins	INS	-	-	CGC			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	6	157100396	157100397	-	CGC	INS	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	in_frame_ins	c.1333_1334	p.449in_frame_insP	1.000:1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				8	0	0	19	4	17.3913
HUWE1	0	genome.wustl.edu	37	X	53661171	53661186	+	Splice_Site	DEL	CCCAAAGAGTTACTTA	CCCAAAGAGTTACTTA	-			TCGA-BR-8381-01A-11D-2394-08	TCGA-BR-8381-10A-01D-2394-08	CCCAAAGAGTTACTTA	CCCAAAGAGTTACTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d6738c83-7b52-4224-846a-67bd085aaab8	69e6cf8a-eb68-478c-a849-51fb2f8736ac	X	53661171	53661186	CCCAAAGAGTTACTTA	-	DEL	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	splice_site_del	c.567+2_567+1	e5+2	0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.000:0.001:0.003:0.977:1.000:1.000:1.000:1.000	-	-	-	no_errors	HUWE1	HGNC	ENSG00000086758				48	0	0	33	8	19.5122
