Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
APITD1-CORT	0	genome.wustl.edu	37	1	10493999	10493999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	10493999	10493999	C	T	SNP	APITD1-CORT	ENST00000400900	human	ensembl	74_37	+1	known	missense	c.152	p.S51L	0.943	superfamily_Histone-fold	pfam_Somatostatin/Cortistatin_C,superfamily_Histone-fold	-	no_errors	APITD1-CORT	HGNC	ENSG00000251503				162	0	0	116	23	16.5468
NTNG1	0	genome.wustl.edu	37	1	108023366	108023366	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	108023366	108023366	C	A	SNP	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	nonsense	c.1524	p.C508*	1.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				15	0	0	31	7	18.4211
CLCC1	0	genome.wustl.edu	37	1	109479918	109479918	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	109479918	109479918	T	C	SNP	CLCC1	ENST00000356970	human	ensembl	74_37	-1	known	silent	c.1164	p.R388	0.053	pfam_Chloride_chnl_CLIC-like	pfam_Chloride_chnl_CLIC-like	-	no_errors	CLCC1	HGNC	ENSG00000121940				78	0	0	59	9	13.2353
SORT1	0	genome.wustl.edu	37	1	109888405	109888405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	109888405	109888405	G	A	SNP	SORT1	ENST00000256637	human	ensembl	74_37	-1	known	missense	c.931	p.R311C	1.000	smart_VPS10	pfam_BNR_rpt,smart_VPS10	-	no_errors	SORT1	HGNC	ENSG00000134243				118	0	0	65	25	27.7778
ATXN7L2	0	genome.wustl.edu	37	1	110032674	110032674	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	110032674	110032674	A	G	SNP	ATXN7L2	ENST00000369870	human	ensembl	74_37	+1	known	missense	c.1160	p.E387G	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650				106	0	0	127	22	14.7651
GSTM4	0	genome.wustl.edu	37	1	110200420	110200420	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	110200420	110200420	C	T	SNP	GSTM4	ENST00000369836	human	ensembl	74_37	+1	known	missense	c.286	p.R96C	0.997	superfamily_Glutathione-S-Trfase_C-like,prints_GST_mu	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_mu	-	no_errors	GSTM4	HGNC	ENSG00000168765				116	0	0	84	14	14.2857
UBL4B	0	genome.wustl.edu	37	1	110655253	110655253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	110655253	110655253	C	T	SNP	UBL4B	ENST00000334179	human	ensembl	74_37	+1	known	missense	c.97	p.R33W	0.238	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	UBL4B	HGNC	ENSG00000186150				89	0	0	91	16	14.9533
TTLL10	0	genome.wustl.edu	37	1	1118373	1118373	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	1118373	1118373	A	G	SNP	TTLL10	ENST00000379289	human	ensembl	74_37	+1	known	missense	c.1034	p.D345G	0.073	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL10	HGNC	ENSG00000162571				18	0	0	17	3	15
MTOR	0	genome.wustl.edu	37	1	11308061	11308061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	11308061	11308061	G	A	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.931	p.R311C	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				129	0	0	111	26	18.9781
SYT6	0	genome.wustl.edu	37	1	114641766	114641766	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	114641766	114641766	C	T	SNP	SYT6	ENST00000393296	human	ensembl	74_37	-1	known	silent	c.1314	p.P438	0.005	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207				132	0	0	114	24	17.3913
SYCP1	0	genome.wustl.edu	37	1	115418728	115418728	+	Silent	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	115418728	115418728	T	G	SNP	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	silent	c.696	p.A232	1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				60	0	0	29	4	12.1212
MTHFR	0	genome.wustl.edu	37	1	11854789	11854789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	11854789	11854789	C	T	SNP	MTHFR	ENST00000376583	human	ensembl	74_37	-1	known	missense	c.1286	p.R429H	1.000	NULL	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000				213	0	0	156	26	14.2857
NOTCH2	0	genome.wustl.edu	37	1	120465332	120465332	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	120465332	120465332	C	T	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	silent	c.4929	p.T1643	0.009	pirsf_Notch,pfam_Notch_NODP_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				152	0	0	131	29	18.125
CCNL2	0	genome.wustl.edu	37	1	1333712	1333712	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	1333712	1333712	A	G	SNP	CCNL2	ENST00000400809	human	ensembl	74_37	-1	known	missense	c.374	p.M125T	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978				89	0	0	80	12	13.0435
PRDM2	0	genome.wustl.edu	37	1	14105788	14105788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	14105788	14105788	C	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.1498	p.R500W	0.492	smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_Znf_C2H2	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				39	0	0	48	11	18.6441
PDE4DIP	0	genome.wustl.edu	37	1	144859831	144859831	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	144859831	144859831	G	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.6253	p.L2085I	0.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				85	0	0	121	11	8.33333
PDE4DIP	0	genome.wustl.edu	37	1	144917533	144917533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	144917533	144917533	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.1571	p.R524H	0.993	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				403	1	0.247525	347	34	8.92388
ANKRD35	0	genome.wustl.edu	37	1	145562653	145562653	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	145562653	145562653	G	A	SNP	ANKRD35	ENST00000355594	human	ensembl	74_37	+1	known	missense	c.2341	p.A781T	0.988	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD35	HGNC	ENSG00000198483				22	0	0	19	4	17.3913
LYSMD1	0	genome.wustl.edu	37	1	151134223	151134223	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	151134223	151134223	T	C	SNP	LYSMD1	ENST00000368908	human	ensembl	74_37	-1	known	silent	c.534	p.K178	0.016	NULL	pfam_LysM_dom,smart_LysM_dom	-	no_errors	LYSMD1	HGNC	ENSG00000163155				133	0	0	130	30	18.75
HRNR	0	genome.wustl.edu	37	1	152193102	152193102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	152193102	152193102	G	A	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.1003	p.R335C	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				137	0	0	137	36	20.8092
LCE3A	0	genome.wustl.edu	37	1	152595541	152595541	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	152595541	152595541	C	T	SNP	LCE3A	ENST00000335674	human	ensembl	74_37	-1	known	silent	c.39	p.P13	0.012	NULL	NULL	-	no_errors	LCE3A	HGNC	ENSG00000185962				79	0	0	108	21	16.2791
TDRD10	0	genome.wustl.edu	37	1	154516454	154516454	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	154516454	154516454	G	A	SNP	TDRD10	ENST00000368480	human	ensembl	74_37	+1	known	silent	c.519	p.V173	0.040	NULL	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239				177	0	0	142	24	14.4578
PBXIP1	0	genome.wustl.edu	37	1	154920759	154920759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	154920759	154920759	G	A	SNP	PBXIP1	ENST00000542459	human	ensembl	74_37	-1	known	missense	c.28	p.R10W	0.994	NULL	NULL	-	no_errors	PBXIP1	HGNC	ENSG00000163346				17	0	0	20	8	28.5714
SHC1	0	genome.wustl.edu	37	1	154938496	154938496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	154938496	154938496	C	T	SNP	SHC1	ENST00000368445	human	ensembl	74_37	-1	known	missense	c.1310	p.R437Q	1.000	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691				99	0	0	98	22	18.3333
ZBTB7B	0	genome.wustl.edu	37	1	154987334	154987334	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	154987334	154987334	C	T	SNP	ZBTB7B	ENST00000417934	human	ensembl	74_37	+1	known	silent	c.300	p.G100	0.194	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7B	HGNC	ENSG00000160685				84	0	0	98	18	15.5172
ADAM15	0	genome.wustl.edu	37	1	155032817	155032817	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	155032817	155032817	C	T	SNP	ADAM15	ENST00000356955	human	ensembl	74_37	+1	known	silent	c.2205	p.Y735	0.998	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537				51	0	0	71	9	11.25
MEX3A	0	genome.wustl.edu	37	1	156046883	156046883	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	156046883	156046883	A	C	SNP	MEX3A	ENST00000532414	human	ensembl	74_37	-1	known	missense	c.1045	p.S349A	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3A	HGNC	ENSG00000254726				68	0	0	99	15	13.1579
HAPLN2	0	genome.wustl.edu	37	1	156594190	156594190	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	156594190	156594190	T	C	SNP	HAPLN2	ENST00000255039	human	ensembl	74_37	+1	known	missense	c.487	p.Y163H	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN2	HGNC	ENSG00000132702				21	0	0	17	4	19.0476
PRCC	0	genome.wustl.edu	37	1	156737593	156737593	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	156737593	156737593	T	C	SNP	PRCC	ENST00000271526	human	ensembl	74_37	+1	known	silent	c.30	p.D10	1.000	NULL	pfam_PRCC	-	no_errors	PRCC	HGNC	ENSG00000143294				18	0	0	18	5	21.7391
CD1A	0	genome.wustl.edu	37	1	158225130	158225130	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	158225130	158225130	G	T	SNP	CD1A	ENST00000289429	human	ensembl	74_37	+1	known	missense	c.315	p.L105F	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1A	HGNC	ENSG00000158477				32	0	0	43	8	15.6863
ATP1A4	0	genome.wustl.edu	37	1	160137219	160137219	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	160137219	160137219	G	A	SNP	ATP1A4	ENST00000477338	human	ensembl	74_37	+1	known	missense	c.1508	p.R503K	0.252	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				99	0	0	79	15	15.9574
PEA15	0	genome.wustl.edu	37	1	160181415	160181415	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	160181415	160181415	C	T	SNP	PEA15	ENST00000360472	human	ensembl	74_37	+1	known	silent	c.81	p.C27	1.000	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	-	no_errors	PEA15	HGNC	ENSG00000162734				91	0	0	65	7	9.72222
C1orf226	0	genome.wustl.edu	37	1	162353432	162353432	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	162353432	162353432	G	A	SNP	C1orf226	ENST00000426197	human	ensembl	74_37	+1	known	missense	c.907	p.D303N	0.992	NULL	NULL	-	no_errors	C1orf226	HGNC	ENSG00000239887				17	0	0	16	5	23.8095
LMX1A	0	genome.wustl.edu	37	1	165218652	165218652	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	165218652	165218652	T	C	SNP	LMX1A	ENST00000294816	human	ensembl	74_37	-1	known	silent	c.489	p.S163	0.761	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1A	HGNC	ENSG00000162761				76	0	0	67	19	22.093
POU2F1	0	genome.wustl.edu	37	1	167365537	167365537	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	167365537	167365537	C	T	SNP	POU2F1	ENST00000367866	human	ensembl	74_37	+1	known	silent	c.1002	p.L334	0.876	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific,prints_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F1	HGNC	ENSG00000143190				137	0	0	91	21	18.75
CROCCP2	0	genome.wustl.edu	37	1	16945401	16945401	+	RNA	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	16945401	16945401	G	A	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.058	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				53	0	0	59	7	10.6061
MST1L	0	genome.wustl.edu	37	1	17084815	17084815	+	RNA	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	17084815	17084815	G	A	SNP	MST1L	ENST00000544155	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.941	-	-	-	no_errors	MST1L	HGNC	ENSG00000186715				13	0	0	13	5	27.7778
BRINP2	0	genome.wustl.edu	37	1	177250045	177250045	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	177250045	177250045	A	C	SNP	BRINP2	ENST00000361539	human	ensembl	74_37	+1	known	missense	c.1733	p.K578T	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP2	HGNC	ENSG00000198797				41	0	0	42	4	8.69565
CEP350	0	genome.wustl.edu	37	1	179993662	179993662	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	179993662	179993662	G	A	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	silent	c.3495	p.S1165	0.004	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837				29	0	0	39	7	15.2174
TAS1R2	0	genome.wustl.edu	37	1	19181096	19181096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	19181096	19181096	G	A	SNP	TAS1R2	ENST00000375371	human	ensembl	74_37	-1	novel	missense	c.868	p.R290C	0.006	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002				40	0	0	47	14	22.9508
CDC73	0	genome.wustl.edu	37	1	193121556	193121556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	193121556	193121556	G	A	SNP	CDC73	ENST00000367435	human	ensembl	74_37	+1	known	missense	c.954	p.M318I	1.000	pfam_RNA_pol_access_fac_Cdc73	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371				38	0	0	20	6	23.0769
UBR4	0	genome.wustl.edu	37	1	19487483	19487483	+	Silent	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	19487483	19487483	A	C	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	silent	c.5334	p.A1778	0.217	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				60	0	0	45	10	18.1818
AKR7L	0	genome.wustl.edu	37	1	19593833	19593833	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	19593833	19593833	C	A	SNP	AKR7L	ENST00000420396	human	ensembl	74_37	-1	known	missense	c.423	p.W141C	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7L	HGNC	ENSG00000211454				87	0	0	80	15	15.7895
GABRD	0	genome.wustl.edu	37	1	1961102	1961102	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	1961102	1961102	C	T	SNP	GABRD	ENST00000378585	human	ensembl	74_37	+1	known	silent	c.960	p.F320	0.878	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAd_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRD	HGNC	ENSG00000187730				50	0	0	42	10	19.2308
CFHR2	0	genome.wustl.edu	37	1	196918663	196918663	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	196918663	196918663	C	A	SNP	CFHR2	ENST00000367415	human	ensembl	74_37	+1	known	missense	c.137	p.P46H	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR2	HGNC	ENSG00000080910				55	0	0	33	8	19.5122
F13B	0	genome.wustl.edu	37	1	197030128	197030128	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	197030128	197030128	G	T	SNP	F13B	ENST00000367412	human	ensembl	74_37	-1	known	missense	c.529	p.Q177K	0.004	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278				76	0	0	59	15	20.2703
KIF21B	0	genome.wustl.edu	37	1	200959409	200959409	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	200959409	200959409	G	A	SNP	KIF21B	ENST00000422435	human	ensembl	74_37	-1	known	missense	c.2887	p.R963W	0.733	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852				29	0	0	40	7	14.8936
LAD1	0	genome.wustl.edu	37	1	201356046	201356046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	201356046	201356046	C	T	SNP	LAD1	ENST00000367313	human	ensembl	74_37	-1	known	missense	c.485	p.R162Q	0.625	pirsf_Ladinin_1	pirsf_Ladinin_1	-	no_errors	LAD1	HGNC	ENSG00000159166				90	0	0	95	20	17.3913
NFASC	0	genome.wustl.edu	37	1	204943372	204943372	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	204943372	204943372	C	T	SNP	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	missense	c.1345	p.R449W	0.995	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				31	0	0	30	4	11.7647
PIGR	0	genome.wustl.edu	37	1	207107940	207107940	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	207107940	207107940	G	A	SNP	PIGR	ENST00000356495	human	ensembl	74_37	-1	known	silent	c.1530	p.D510	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PIGR	HGNC	ENSG00000162896				98	0	0	88	15	14.5631
CR1	0	genome.wustl.edu	37	1	207679348	207679348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	207679348	207679348	G	A	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	missense	c.221	p.R74H	0.947	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				125	0	0	93	21	18.4211
RPS6KC1	0	genome.wustl.edu	37	1	213303055	213303055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	213303055	213303055	C	T	SNP	RPS6KC1	ENST00000366960	human	ensembl	74_37	+1	known	missense	c.658	p.R220W	0.959	NULL	pfam_Prot_kinase_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643				75	0	0	40	8	16.6667
USH2A	0	genome.wustl.edu	37	1	216062163	216062163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	216062163	216062163	G	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.7828	p.L2610F	0.727	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				73	0	0	59	13	18.0556
LDLRAD2	0	genome.wustl.edu	37	1	22140997	22140997	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	22140997	22140997	C	T	SNP	LDLRAD2	ENST00000344642	human	ensembl	74_37	+1	known	silent	c.192	p.C64	0.981	superfamily_CUB_dom	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,superfamily_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD2	HGNC	ENSG00000187942				52	0	0	88	5	5.37634
SKI	0	genome.wustl.edu	37	1	2235477	2235477	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	2235477	2235477	C	T	SNP	SKI	ENST00000378536	human	ensembl	74_37	+1	known	silent	c.1410	p.P470	0.000	NULL	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKI	HGNC	ENSG00000157933				26	0	0	35	13	27.0833
TP53BP2	0	genome.wustl.edu	37	1	224009062	224009062	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	224009062	224009062	A	G	SNP	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	missense	c.35	p.L12P	0.998	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514				249	0	0	185	37	16.6667
CDC42BPA	0	genome.wustl.edu	37	1	227348245	227348245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	227348245	227348245	G	A	SNP	CDC42BPA	ENST00000334218	human	ensembl	74_37	-1	known	missense	c.692	p.T231M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776				89	0	0	43	10	18.8679
C1QA	0	genome.wustl.edu	37	1	22965798	22965798	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	22965798	22965798	T	C	SNP	C1QA	ENST00000374642	human	ensembl	74_37	+1	known	silent	c.636	p.G212	0.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QA	HGNC	ENSG00000173372				75	0	0	60	14	18.9189
MAP10	0	genome.wustl.edu	37	1	232942219	232942219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	232942219	232942219	C	T	SNP	MAP10	ENST00000418460	human	ensembl	74_37	+1	known	missense	c.1450	p.R484C	0.000	NULL	NULL	-	no_errors	MAP10	HGNC	ENSG00000212916				59	0	0	54	14	20.5882
PCNXL2	0	genome.wustl.edu	37	1	233388424	233388424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	233388424	233388424	C	T	SNP	PCNXL2	ENST00000258229	human	ensembl	74_37	-1	known	missense	c.1945	p.G649S	0.224	NULL	pfam_Pecanex,superfamily_Trypsin-like_Pept_dom	-	no_errors	PCNXL2	HGNC	ENSG00000135749				139	0	0	100	27	21.2598
RYR2	0	genome.wustl.edu	37	1	237608789	237608789	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	237608789	237608789	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.1253	p.R418Q	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				58	0	0	80	8	9.09091
GREM2	0	genome.wustl.edu	37	1	240656622	240656622	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	240656622	240656622	C	T	SNP	GREM2	ENST00000318160	human	ensembl	74_37	-1	known	missense	c.154	p.V52M	1.000	pfam_DAN,pirsf_Gremlin_precursor	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	-	no_errors	GREM2	HGNC	ENSG00000180875				62	0	0	67	10	12.987
WDR64	0	genome.wustl.edu	37	1	241958536	241958536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	241958536	241958536	G	A	SNP	WDR64	ENST00000366552	human	ensembl	74_37	+1	known	missense	c.2995	p.V999M	0.004	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843				99	0	0	77	12	13.4831
KIF26B	0	genome.wustl.edu	37	1	245861420	245861420	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	245861420	245861420	G	T	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	missense	c.5837	p.R1946L	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				27	0	0	26	6	18.75
GCSAML	0	genome.wustl.edu	37	1	247719754	247719754	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	247719754	247719754	T	C	SNP	GCSAML	ENST00000366488	human	ensembl	74_37	+1	known	silent	c.75	p.D25	0.001	NULL	NULL	-	no_errors	GCSAML	HGNC	ENSG00000169224				22	0	0	13	6	31.5789
OR2L13	0	genome.wustl.edu	37	1	248262815	248262815	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	248262815	248262815	C	T	SNP	OR2L13	ENST00000358120	human	ensembl	74_37	+1	known	silent	c.138	p.H46	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L13	HGNC	ENSG00000196071				140	0	0	125	26	17.2185
OR2T4	0	genome.wustl.edu	37	1	248525518	248525518	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	248525518	248525518	A	C	SNP	OR2T4	ENST00000366475	human	ensembl	74_37	+1	known	missense	c.636	p.E212D	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944				193	1	0.515464	183	21	10.2941
OR2T6	0	genome.wustl.edu	37	1	248550993	248550993	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	248550993	248550993	C	T	SNP	OR2T6	ENST00000355728	human	ensembl	74_37	+1	known	silent	c.84	p.F28	0.030	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2T6	HGNC	ENSG00000198104				95	0	0	69	12	14.8148
ARID1A	0	genome.wustl.edu	37	1	27099909	27099909	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	27099909	27099909	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.3788	p.A1263V	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				54	0	0	51	13	20.3125
EPB41	0	genome.wustl.edu	37	1	29365854	29365854	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	29365854	29365854	A	G	SNP	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	missense	c.1552	p.R518G	1.000	pirsf_Band_41_protein,pfam_FERM-adjacent	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023				115	0	0	101	17	14.4068
PRDM16	0	genome.wustl.edu	37	1	3328391	3328391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	3328391	3328391	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	missense	c.1630	p.D544N	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				118	1	0.840336	125	33	20.8861
PRDM16	0	genome.wustl.edu	37	1	3328975	3328975	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	3328975	3328975	C	A	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	nonsense	c.2214	p.Y738*	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				101	0	0	103	22	17.6
ZNF362	0	genome.wustl.edu	37	1	33745971	33745971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	33745971	33745971	C	T	SNP	ZNF362	ENST00000373428	human	ensembl	74_37	+1	known	missense	c.596	p.A199V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF362	HGNC	ENSG00000160094				42	0	0	44	14	24.1379
C1orf94	0	genome.wustl.edu	37	1	34666581	34666581	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	34666581	34666581	C	T	SNP	C1orf94	ENST00000488417	human	ensembl	74_37	+1	known	silent	c.1218	p.S406	0.015	NULL	NULL	-	no_errors	C1orf94	HGNC	ENSG00000142698				27	0	0	26	7	21.2121
ZC3H12A	0	genome.wustl.edu	37	1	37949047	37949047	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	37949047	37949047	G	T	SNP	ZC3H12A	ENST00000373087	human	ensembl	74_37	+1	known	missense	c.1635	p.R545S	0.017	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874				89	0	0	124	14	10.1449
GNL2	0	genome.wustl.edu	37	1	38034527	38034527	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	38034527	38034527	T	G	SNP	GNL2	ENST00000373062	human	ensembl	74_37	-1	known	missense	c.1793	p.K598T	0.889	NULL	pfam_NOG2_N_dom,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	GNL2	HGNC	ENSG00000134697				227	0	0	175	32	15.4589
SZT2	0	genome.wustl.edu	37	1	43888807	43888807	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	43888807	43888807	G	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	missense	c.2075	p.R692L	1.000	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				18	0	0	9	3	25
HYI	0	genome.wustl.edu	37	1	43916935	43916935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	43916935	43916935	G	A	SNP	HYI	ENST00000372425	human	ensembl	74_37	-1	known	missense	c.808	p.R270W	0.002	NULL	pfam_Xyl_isomerase-like_TIM-brl,superfamily_Xyl_isomerase-like_TIM-brl	-	no_errors	HYI	HGNC	ENSG00000178922				124	0	0	117	31	20.9459
TESK2	0	genome.wustl.edu	37	1	45813321	45813321	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	45813321	45813321	A	G	SNP	TESK2	ENST00000372086	human	ensembl	74_37	-1	known	missense	c.668	p.M223T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK2	HGNC	ENSG00000070759				175	0	0	155	27	14.8352
LRRC41	0	genome.wustl.edu	37	1	46744617	46744617	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	46744617	46744617	G	A	SNP	LRRC41	ENST00000343304	human	ensembl	74_37	-1	known	missense	c.2359	p.R787W	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128				79	0	0	72	16	18.1818
ZCCHC11	0	genome.wustl.edu	37	1	52927267	52927267	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	52927267	52927267	A	G	SNP	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	missense	c.3149	p.I1050T	1.000	pfam_Nucleotidyltransferase	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				34	0	0	35	9	20.4545
USP24	0	genome.wustl.edu	37	1	55559693	55559693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	55559693	55559693	G	A	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	missense	c.5791	p.R1931W	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				19	0	0	18	8	30.7692
FGGY	0	genome.wustl.edu	37	1	60106990	60106990	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	60106990	60106990	G	A	SNP	FGGY	ENST00000371218	human	ensembl	74_37	+1	novel	silent	c.1260	p.A420	0.000	pfam_Carb_kinase_FGGY_C	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456				27	0	0	21	4	16
DNAJC6	0	genome.wustl.edu	37	1	65852530	65852530	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	65852530	65852530	C	A	SNP	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	missense	c.1031	p.P344H	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				72	0	0	46	11	19.2982
MIER1	0	genome.wustl.edu	37	1	67411943	67411943	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	67411943	67411943	A	G	SNP	MIER1	ENST00000401041	human	ensembl	74_37	+1	known	missense	c.304	p.T102A	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER1	HGNC	ENSG00000198160				94	0	0	68	7	9.33333
LRRC7	0	genome.wustl.edu	37	1	70257797	70257797	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	70257797	70257797	T	C	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	silent	c.261	p.T87	0.924	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				77	0	0	46	6	11.5385
LRRC7	0	genome.wustl.edu	37	1	70503937	70503937	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	70503937	70503937	G	A	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	silent	c.2316	p.S772	0.017	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				188	0	0	156	28	15.2174
CAMTA1	0	genome.wustl.edu	37	1	7527916	7527916	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	7527916	7527916	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	silent	c.465	p.S155	1.000	pfam_CG-1_dom	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				164	0	0	144	26	15.2941
CLCA4	0	genome.wustl.edu	37	1	87041015	87041015	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	87041015	87041015	G	A	SNP	CLCA4	ENST00000370563	human	ensembl	74_37	+1	known	missense	c.1684	p.V562M	0.848	pfam_DUF1973,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602				61	0	0	48	11	18.6441
GBP6	0	genome.wustl.edu	37	1	89846020	89846020	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	89846020	89846020	T	C	SNP	GBP6	ENST00000370456	human	ensembl	74_37	+1	known	missense	c.701	p.F234S	0.964	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP6	HGNC	ENSG00000183347				45	0	0	38	16	29.6296
SLC2A5	0	genome.wustl.edu	37	1	9099965	9099965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	9099965	9099965	G	A	SNP	SLC2A5	ENST00000377424	human	ensembl	74_37	-1	known	missense	c.779	p.A260V	0.075	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Fru_transpt_5,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A5	HGNC	ENSG00000142583				31	0	0	36	8	18.1818
ZNF644	0	genome.wustl.edu	37	1	91405341	91405341	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	91405341	91405341	A	G	SNP	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	missense	c.1570	p.Y524H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				91	0	0	77	19	19.7917
ABCA4	0	genome.wustl.edu	37	1	94480230	94480230	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	94480230	94480230	T	C	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	missense	c.5329	p.M1777V	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				158	0	0	138	26	15.8537
TMEM201	0	genome.wustl.edu	37	1	9656056	9656056	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	9656056	9656056	C	T	SNP	TMEM201	ENST00000340381	human	ensembl	74_37	+1	known	silent	c.222	p.N74	1.000	pfam_Ima1_N	pfam_DUF2448,pfam_Ima1_N	-	no_errors	TMEM201	HGNC	ENSG00000188807				42	0	0	26	6	18.75
SEMA4G	0	genome.wustl.edu	37	10	102732747	102732747	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	102732747	102732747	G	A	SNP	SEMA4G	ENST00000210633	human	ensembl	74_37	+1	known	silent	c.78	p.P26	0.696	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4G	HGNC	ENSG00000095539				89	0	0	88	23	20.7207
SORCS3	0	genome.wustl.edu	37	10	106401696	106401696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	106401696	106401696	C	T	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.611	p.S204L	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				15	0	0	16	5	23.8095
DUSP5	0	genome.wustl.edu	37	10	112257938	112257938	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	112257938	112257938	C	T	SNP	DUSP5	ENST00000369583	human	ensembl	74_37	+1	known	missense	c.59	p.A20V	1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pirsf_MKP,pfscan_Rhodanese-like_dom	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP5	HGNC	ENSG00000138166				35	0	0	50	11	18.0328
ADRB1	0	genome.wustl.edu	37	10	115804478	115804478	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	115804478	115804478	T	C	SNP	ADRB1	ENST00000369295	human	ensembl	74_37	+1	known	missense	c.587	p.M196T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB1_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_5HT6_rcpt	-	no_errors	ADRB1	HGNC	ENSG00000043591				44	0	0	56	16	22.2222
PNLIPRP3	0	genome.wustl.edu	37	10	118228695	118228695	+	Splice_Site	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	118228695	118228695	A	G	SNP	PNLIPRP3	ENST00000369230	human	ensembl	74_37	+1	known	splice_site	c.928-2	e9-2	0.996	-	-	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837				51	0	0	32	8	20
KCNK18	0	genome.wustl.edu	37	10	118969223	118969223	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	118969223	118969223	C	A	SNP	KCNK18	ENST00000334549	human	ensembl	74_37	+1	known	missense	c.568	p.P190T	0.000	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795				90	0	0	96	15	13.5135
CHST15	0	genome.wustl.edu	37	10	125769827	125769827	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	125769827	125769827	C	A	SNP	CHST15	ENST00000346248	human	ensembl	74_37	-1	known	missense	c.1524	p.L508F	0.939	superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	CHST15	HGNC	ENSG00000182022				21	0	0	13	3	18.75
UROS	0	genome.wustl.edu	37	10	127491579	127491579	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	127491579	127491579	C	A	SNP	UROS	ENST00000368778	human	ensembl	74_37	-1	known	nonsense	c.409	p.G137*	0.013	NULL	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	-	no_errors	UROS	HGNC	ENSG00000188690				46	0	0	31	4	11.4286
FAM196A	0	genome.wustl.edu	37	10	128973966	128973966	+	Silent	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	128973966	128973966	G	T	SNP	FAM196A	ENST00000522781	human	ensembl	74_37	-1	known	silent	c.694	p.R232	0.000	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916				27	0	0	44	6	12
CUBN	0	genome.wustl.edu	37	10	17126369	17126369	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	17126369	17126369	G	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.2202	p.C734	0.542	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				48	0	0	35	4	10.2564
PDSS1	0	genome.wustl.edu	37	10	27024408	27024408	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	27024408	27024408	T	C	SNP	PDSS1	ENST00000376215	human	ensembl	74_37	+1	known	missense	c.926	p.V309A	0.998	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	PDSS1	HGNC	ENSG00000148459				54	0	0	47	12	20.339
ZEB1	0	genome.wustl.edu	37	10	31608218	31608218	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	31608218	31608218	A	G	SNP	ZEB1	ENST00000361642	human	ensembl	74_37	+1	known	missense	c.55	p.N19D	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516				8	0	0	15	3	16.6667
KIF5B	0	genome.wustl.edu	37	10	32324901	32324901	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	32324901	32324901	C	A	SNP	KIF5B	ENST00000302418	human	ensembl	74_37	-1	known	missense	c.733	p.G245C	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759				60	0	0	45	6	11.7647
ITGB1	0	genome.wustl.edu	37	10	33214866	33214866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	33214866	33214866	C	T	SNP	ITGB1	ENST00000374956	human	ensembl	74_37	-1	known	missense	c.719	p.R240H	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093				113	0	0	82	13	13.6842
CCNY	0	genome.wustl.edu	37	10	35855055	35855055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	35855055	35855055	C	T	SNP	CCNY	ENST00000374704	human	ensembl	74_37	+1	known	missense	c.851	p.A284V	1.000	pirsf_Cyclin_Y	pfam_Cyclin_N,pfam_Cyclin_PHO80-like,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_Y	-	no_errors	CCNY	HGNC	ENSG00000108100				97	0	0	69	18	20.6897
ZNF25	0	genome.wustl.edu	37	10	38241571	38241571	+	Silent	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	38241571	38241571	G	T	SNP	ZNF25	ENST00000302609	human	ensembl	74_37	-1	known	silent	c.855	p.P285	0.873	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF25	HGNC	ENSG00000175395				66	0	0	57	4	6.55738
ZNF33B	0	genome.wustl.edu	37	10	43089480	43089480	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	43089480	43089480	A	G	SNP	ZNF33B	ENST00000359467	human	ensembl	74_37	-1	known	silent	c.918	p.S306	0.998	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33B	HGNC	ENSG00000196693				118	0	0	97	7	6.73077
HNRNPF	0	genome.wustl.edu	37	10	43882176	43882176	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	43882176	43882176	T	G	SNP	HNRNPF	ENST00000337970	human	ensembl	74_37	-1	known	missense	c.1157	p.Q386P	1.000	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPF	HGNC	ENSG00000169813				141	0	0	149	32	17.6796
GPRIN2	0	genome.wustl.edu	37	10	47000005	47000005	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	47000005	47000005	G	A	SNP	GPRIN2	ENST00000374314	human	ensembl	74_37	+1	known	silent	c.1125	p.V375	0.000	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175				146	0	0	133	13	8.90411
NPY4R	0	genome.wustl.edu	37	10	47087826	47087826	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	47087826	47087826	A	G	SNP	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	missense	c.1043	p.E348G	0.130	prints_NPY4_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174				176	0	0	158	14	8.13953
RBP3	0	genome.wustl.edu	37	10	48382208	48382208	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	48382208	48382208	C	T	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	silent	c.3441	p.T1147	0.011	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618				39	0	0	52	6	10.3448
SLC18A3	0	genome.wustl.edu	37	10	50819083	50819083	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	50819083	50819083	G	A	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	silent	c.297	p.A99	0.690	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				57	0	0	73	16	17.9775
BICC1	0	genome.wustl.edu	37	10	60573605	60573605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	60573605	60573605	C	T	SNP	BICC1	ENST00000373886	human	ensembl	74_37	+1	known	missense	c.2392	p.L798F	1.000	NULL	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870				111	0	0	102	28	21.5385
FAM13C	0	genome.wustl.edu	37	10	61011287	61011287	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	61011287	61011287	A	G	SNP	FAM13C	ENST00000435852	human	ensembl	74_37	-1	putative	missense	c.1682	p.L561S	0.001	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541				97	0	0	42	8	16
ANK3	0	genome.wustl.edu	37	10	61833539	61833539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	61833539	61833539	C	T	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.7100	p.R2367Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				97	0	0	71	12	14.4578
CTNNA3	0	genome.wustl.edu	37	10	68280472	68280472	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	68280472	68280472	G	A	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	silent	c.1434	p.T478	0.997	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				85	0	0	68	16	19.0476
CCAR1	0	genome.wustl.edu	37	10	70509303	70509303	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	70509303	70509303	C	T	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	missense	c.979	p.R327C	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				59	0	0	46	13	22.0339
SRGN	0	genome.wustl.edu	37	10	70863692	70863692	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	70863692	70863692	T	C	SNP	SRGN	ENST00000242465	human	ensembl	74_37	+1	known	missense	c.293	p.F98S	0.947	pfam_Serglycin	pfam_Serglycin	-	no_errors	SRGN	HGNC	ENSG00000122862				63	0	0	71	14	16.4706
CHST3	0	genome.wustl.edu	37	10	73767393	73767393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	73767393	73767393	G	A	SNP	CHST3	ENST00000373115	human	ensembl	74_37	+1	known	missense	c.604	p.V202M	0.895	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST3	HGNC	ENSG00000122863				20	0	0	33	7	17.5
SPOCK2	0	genome.wustl.edu	37	10	73826724	73826724	+	Silent	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	73826724	73826724	G	T	SNP	SPOCK2	ENST00000317376	human	ensembl	74_37	-1	known	silent	c.864	p.S288	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK2	HGNC	ENSG00000107742				96	0	0	129	14	9.79021
CAMK2G	0	genome.wustl.edu	37	10	75606993	75606993	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	75606993	75606993	G	T	SNP	CAMK2G	ENST00000423381	human	ensembl	74_37	-1	known	missense	c.809	p.P270Q	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2G	HGNC	ENSG00000148660				65	0	0	51	10	16.3934
SH2D4B	0	genome.wustl.edu	37	10	82331221	82331221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	82331221	82331221	C	T	SNP	SH2D4B	ENST00000470604	human	ensembl	74_37	+1	known	missense	c.379	p.R127W	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2D4B	HGNC	ENSG00000178217				50	0	0	39	12	23.5294
ANKRD22	0	genome.wustl.edu	37	10	90591666	90591666	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	90591666	90591666	C	T	SNP	ANKRD22	ENST00000371930	human	ensembl	74_37	-1	known	missense	c.139	p.A47T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD22	HGNC	ENSG00000152766				235	1	0.423729	233	36	13.3829
IFIT5	0	genome.wustl.edu	37	10	91178104	91178104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	91178104	91178104	G	A	SNP	IFIT5	ENST00000371795	human	ensembl	74_37	+1	known	missense	c.1148	p.G383D	1.000	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT5	HGNC	ENSG00000152778				52	0	0	40	5	11.1111
TCTN3	0	genome.wustl.edu	37	10	97447373	97447373	+	Silent	SNP	A	A	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	97447373	97447373	A	T	SNP	TCTN3	ENST00000371217	human	ensembl	74_37	-1	known	silent	c.603	p.T201	0.000	pfam_DUF1619	pfam_DUF1619	-	no_errors	TCTN3	HGNC	ENSG00000119977				64	0	0	37	3	7.5
C10orf12	0	genome.wustl.edu	37	10	98744071	98744071	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	98744071	98744071	G	A	SNP	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	missense	c.2924	p.S975N	0.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640				122	0	0	93	21	18.4211
SLIT1	0	genome.wustl.edu	37	10	98766411	98766411	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	98766411	98766411	G	A	SNP	SLIT1	ENST00000266058	human	ensembl	74_37	-1	known	silent	c.3408	p.C1136	1.000	smart_Fol_N,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EG-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122				41	0	0	38	6	13.6364
MUC6	0	genome.wustl.edu	37	11	1015989	1015989	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	1015989	1015989	G	A	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.6812	p.S2271L	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				162	0	0	161	26	13.9037
DDI1	0	genome.wustl.edu	37	11	103908053	103908053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	103908053	103908053	C	T	SNP	DDI1	ENST00000302259	human	ensembl	74_37	+1	known	missense	c.503	p.A168V	0.999	NULL	pfam_Peptidase_aspartic_DDI1-type,pfam_Ubiquitin_dom,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967				97	0	0	113	17	13.0769
HTR3B	0	genome.wustl.edu	37	11	113813714	113813714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	113813714	113813714	G	A	SNP	HTR3B	ENST00000260191	human	ensembl	74_37	+1	known	missense	c.707	p.R236H	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_B,prints_5HT3_rcpt,prints_Neur_channel,prints_5HT3_rcpt_A,tigrfam_Neur_channel	-	no_errors	HTR3B	HGNC	ENSG00000149305				57	0	0	43	10	18.8679
NXPE4	0	genome.wustl.edu	37	11	114453511	114453511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	114453511	114453511	G	A	SNP	NXPE4	ENST00000375478	human	ensembl	74_37	-1	known	missense	c.329	p.T110M	0.001	superfamily_Ig_E-set	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE4	HGNC	ENSG00000137634				150	0	0	135	34	20.1183
BCL9L	0	genome.wustl.edu	37	11	118773280	118773280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	118773280	118773280	C	T	SNP	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	missense	c.1172	p.R391H	0.811	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				41	0	0	57	9	13.6364
VPS11	0	genome.wustl.edu	37	11	118942398	118942398	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	118942398	118942398	G	T	SNP	VPS11	ENST00000300793	human	ensembl	74_37	+1	known	missense	c.726	p.Q242H	1.000	superfamily_WD40_repeat_dom,pirsf_VPS11	pfam_VPS11_C,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_RING,pirsf_VPS11,pfscan_Znf_RING	-	no_errors	VPS11	HGNC	ENSG00000160695				62	0	0	53	9	14.5161
RNF26	0	genome.wustl.edu	37	11	119206740	119206740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	119206740	119206740	G	A	SNP	RNF26	ENST00000311413	human	ensembl	74_37	+1	known	missense	c.908	p.R303Q	0.163	NULL	pfscan_Znf_RING	-	no_errors	RNF26	HGNC	ENSG00000173456				45	0	0	37	9	19.5652
CCDC15	0	genome.wustl.edu	37	11	124824758	124824758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	124824758	124824758	G	A	SNP	CCDC15	ENST00000344762	human	ensembl	74_37	+1	known	missense	c.130	p.A44T	1.000	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548				73	0	0	80	6	6.97674
ARHGAP32	0	genome.wustl.edu	37	11	128840482	128840482	+	Silent	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	128840482	128840482	G	T	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	silent	c.4584	p.A1528	0.133	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				52	0	0	49	12	19.6721
TEAD1	0	genome.wustl.edu	37	11	12901216	12901216	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	12901216	12901216	C	T	SNP	TEAD1	ENST00000526600	human	ensembl	74_37	+1	putative	missense	c.4	p.R2C	0.000	pirsf_TEF	pfam_TEA/ATTS,pirsf_TEF	-	no_errors	TEAD1	HGNC	ENSG00000187079				59	0	0	39	15	27.7778
ARNTL	0	genome.wustl.edu	37	11	13402723	13402723	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	13402723	13402723	G	A	SNP	ARNTL	ENST00000403290	human	ensembl	74_37	+1	known	silent	c.1539	p.S513	0.003	NULL	pfam_PAS_fold,pfam_PAS_fold_3,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794				96	0	0	82	20	19.6078
PRMT3	0	genome.wustl.edu	37	11	20515731	20515731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	20515731	20515731	C	T	SNP	PRMT3	ENST00000331079	human	ensembl	74_37	+1	known	missense	c.1417	p.P473S	1.000	pfam_Arg_MeTrfase	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_mo5U34_MeTrfas-like,pfam_Methyltransf_11,pfam_Arg_MeTrfase,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT3	HGNC	ENSG00000185238				193	0	0	135	14	9.39597
BDNF	0	genome.wustl.edu	37	11	27680043	27680043	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	27680043	27680043	T	C	SNP	BDNF	ENST00000438929	human	ensembl	74_37	-1	known	silent	c.315	p.E105	1.000	NULL	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Brain-der_neurotrophic_factor,prints_Nerve_growth_factor-rel	-	no_errors	BDNF	HGNC	ENSG00000176697				116	0	0	107	21	16.4062
IFITM5	0	genome.wustl.edu	37	11	299306	299306	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	299306	299306	T	C	SNP	IFITM5	ENST00000382614	human	ensembl	74_37	-1	known	missense	c.185	p.K62R	1.000	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	IFITM5	HGNC	ENSG00000206013				10	0	0	11	4	26.6667
PAX6	0	genome.wustl.edu	37	11	31823109	31823109	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	31823109	31823109	G	A	SNP	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	silent	c.399	p.S133	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372				71	0	0	55	13	19.1176
RNH1	0	genome.wustl.edu	37	11	498110	498110	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	498110	498110	A	G	SNP	RNH1	ENST00000354420	human	ensembl	74_37	-1	known	missense	c.988	p.C330R	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	RNH1	HGNC	ENSG00000023191				49	0	0	43	5	10.4167
TRIM48	0	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	55035844	55035844	T	C	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	missense	c.574	p.Y192H	0.183	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244				60	0	0	45	6	11.7647
UBQLN3	0	genome.wustl.edu	37	11	5529402	5529402	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	5529402	5529402	A	G	SNP	UBQLN3	ENST00000311659	human	ensembl	74_37	-1	known	missense	c.1387	p.S463P	0.000	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520				50	0	0	56	17	23.2877
OR4C15	0	genome.wustl.edu	37	11	55322544	55322544	+	Silent	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	55322544	55322544	C	A	SNP	OR4C15	ENST00000314644	human	ensembl	74_37	+1	known	silent	c.762	p.I254	0.487	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939				57	0	0	43	10	18.8679
OR5F1	0	genome.wustl.edu	37	11	55761467	55761467	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	55761467	55761467	A	C	SNP	OR5F1	ENST00000278409	human	ensembl	74_37	-1	known	missense	c.635	p.L212R	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5F1	HGNC	ENSG00000149133				79	0	0	54	16	22.8571
OR5M3	0	genome.wustl.edu	37	11	56237279	56237279	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	56237279	56237279	C	A	SNP	OR5M3	ENST00000312240	human	ensembl	74_37	-1	known	missense	c.695	p.R232M	0.147	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M3	HGNC	ENSG00000174937				77	0	0	56	8	12.5
TNKS1BP1	0	genome.wustl.edu	37	11	57068391	57068391	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	57068391	57068391	A	G	SNP	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	missense	c.5096	p.L1699P	0.906	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				128	0	0	112	19	14.5038
TNKS1BP1	0	genome.wustl.edu	37	11	57080070	57080070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	57080070	57080070	C	T	SNP	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	missense	c.2092	p.G698S	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				72	0	0	68	15	18.0723
CTNND1	0	genome.wustl.edu	37	11	57569533	57569533	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	57569533	57569533	T	C	SNP	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	missense	c.1285	p.C429R	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561				168	1	0.591716	158	35	18.1347
GLYATL1	0	genome.wustl.edu	37	11	58711066	58711066	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	58711066	58711066	G	A	SNP	GLYATL1	ENST00000300079	human	ensembl	74_37	+1	known	silent	c.75	p.A25	0.010	NULL	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYATL1	HGNC	ENSG00000166840				34	0	0	32	4	11.1111
SCGB1D4	0	genome.wustl.edu	37	11	62064988	62064988	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	62064988	62064988	G	A	SNP	SCGB1D4	ENST00000358585	human	ensembl	74_37	-1	known	silent	c.198	p.T66	0.000	pfam_Secretoglobin,superfamily_Secretoglobin	pfam_Secretoglobin,superfamily_Secretoglobin	-	no_errors	SCGB1D4	HGNC	ENSG00000197745				254	0	0	221	34	13.3333
MTA2	0	genome.wustl.edu	37	11	62361871	62361871	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	62361871	62361871	C	T	SNP	MTA2	ENST00000278823	human	ensembl	74_37	-1	known	silent	c.1701	p.G567	0.941	NULL	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA2	HGNC	ENSG00000149480				103	0	0	92	17	15.5963
LRRN4CL	0	genome.wustl.edu	37	11	62455768	62455768	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	62455768	62455768	G	A	SNP	LRRN4CL	ENST00000317449	human	ensembl	74_37	-1	known	silent	c.213	p.C71	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4CL	HGNC	ENSG00000177363				26	0	0	30	9	23.0769
CNGA4	0	genome.wustl.edu	37	11	6260939	6260939	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	6260939	6260939	G	A	SNP	CNGA4	ENST00000379936	human	ensembl	74_37	+1	known	missense	c.190	p.G64S	0.000	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259				36	0	0	29	5	14.7059
SLC22A11	0	genome.wustl.edu	37	11	64336156	64336156	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	64336156	64336156	C	T	SNP	SLC22A11	ENST00000301891	human	ensembl	74_37	+1	known	missense	c.1288	p.R430C	0.769	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A11	HGNC	ENSG00000168065				98	0	0	82	18	18
PYGM	0	genome.wustl.edu	37	11	64527189	64527189	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	64527189	64527189	C	T	SNP	PYGM	ENST00000164139	human	ensembl	74_37	-1	known	missense	c.182	p.R61H	1.000	pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976				236	0	0	227	56	19.788
CDC42BPG	0	genome.wustl.edu	37	11	64603009	64603009	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	64603009	64603009	C	T	SNP	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	missense	c.1843	p.A615T	0.000	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219				118	0	0	110	24	17.9104
CDC42BPG	0	genome.wustl.edu	37	11	64606620	64606620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	64606620	64606620	C	T	SNP	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	missense	c.761	p.G254D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219				157	0	0	131	27	17.0886
ATG2A	0	genome.wustl.edu	37	11	64665575	64665575	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	64665575	64665575	C	A	SNP	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	missense	c.4847	p.G1616V	0.894	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046				99	0	0	80	19	19.1919
VPS51	0	genome.wustl.edu	37	11	64877280	64877280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	64877280	64877280	C	T	SNP	VPS51	ENST00000279281	human	ensembl	74_37	+1	known	missense	c.1763	p.S588L	0.998	NULL	pfam_COG8,pfam_Vacuolar_sorting-assoc_54,pfam_COG_su2_N,pfam_RZZ-complex_Zw10,superfamily_Cullin_repeat-like_dom	-	no_errors	VPS51	HGNC	ENSG00000149823				16	0	0	16	2	11.1111
SSSCA1	0	genome.wustl.edu	37	11	65339169	65339169	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	65339169	65339169	G	A	SNP	SSSCA1	ENST00000309328	human	ensembl	74_37	+1	known	silent	c.564	p.A188	0.995	NULL	pfam_SSSCA1	-	no_errors	SSSCA1	HGNC	ENSG00000173465				31	0	0	28	2	6.66667
MAP3K11	0	genome.wustl.edu	37	11	65365879	65365879	+	Silent	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	65365879	65365879	T	G	SNP	MAP3K11	ENST00000309100	human	ensembl	74_37	-1	known	silent	c.2427	p.S809	0.916	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327				29	0	0	35	6	14.6341
PCNXL3	0	genome.wustl.edu	37	11	65396109	65396109	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	65396109	65396109	T	G	SNP	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	missense	c.3746	p.I1249S	1.000	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				58	0	0	67	15	18.2927
KAT5	0	genome.wustl.edu	37	11	65481995	65481995	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	65481995	65481995	G	A	SNP	KAT5	ENST00000341318	human	ensembl	74_37	+1	known	silent	c.720	p.P240	0.250	NULL	pfam_MOZ_SAS,pfam_Tudor-knot,superfamily_Acyl_CoA_acyltransferase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	KAT5	HGNC	ENSG00000172977				62	0	0	53	16	23.1884
FIBP	0	genome.wustl.edu	37	11	65655490	65655490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	65655490	65655490	C	T	SNP	FIBP	ENST00000338369	human	ensembl	74_37	-1	known	missense	c.199	p.E67K	1.000	pfam_FIBP	pfam_FIBP	-	no_errors	FIBP	HGNC	ENSG00000172500				20	0	0	14	7	33.3333
CCDC85B	0	genome.wustl.edu	37	11	65658545	65658545	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	65658545	65658545	G	A	SNP	CCDC85B	ENST00000312579	human	ensembl	74_37	+1	known	silent	c.291	p.Q97	1.000	pfam_DUF2216_coiled-coil	pfam_DUF2216_coiled-coil	-	no_errors	CCDC85B	HGNC	ENSG00000175602				11	0	0	4	3	42.8571
SF3B2	0	genome.wustl.edu	37	11	65827423	65827423	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	65827423	65827423	G	A	SNP	SF3B2	ENST00000322535	human	ensembl	74_37	+1	known	silent	c.1572	p.L524	1.000	pfam_DUF382	pfam_DUF382,pfam_PSP,pfam_SAP_dom,smart_SAP_dom,smart_PSP,pfscan_SAP_dom	-	no_errors	SF3B2	HGNC	ENSG00000087365				70	0	0	69	12	14.8148
DNHD1	0	genome.wustl.edu	37	11	6589805	6589805	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	6589805	6589805	A	G	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	silent	c.12660	p.P4220	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532				57	0	0	46	6	11.5385
KDM2A	0	genome.wustl.edu	37	11	67018078	67018078	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	67018078	67018078	A	G	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	silent	c.2577	p.E859	0.097	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				27	0	0	23	11	32.3529
RPS6KB2	0	genome.wustl.edu	37	11	67201891	67201891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	67201891	67201891	G	A	SNP	RPS6KB2	ENST00000312629	human	ensembl	74_37	+1	known	missense	c.1091	p.R364Q	0.259	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB2	HGNC	ENSG00000175634				76	0	0	50	14	21.875
FAM86C2P	0	genome.wustl.edu	37	11	67564234	67564234	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	67564234	67564234	C	T	SNP	FAM86C2P	ENST00000525180	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM86C2P	HGNC	ENSG00000160172				89	0	0	100	12	10.7143
OLFML1	0	genome.wustl.edu	37	11	7530851	7530851	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	7530851	7530851	A	G	SNP	OLFML1	ENST00000329293	human	ensembl	74_37	+1	known	missense	c.641	p.Q214R	0.995	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML1	HGNC	ENSG00000183801				66	0	0	59	17	22.3684
GDPD4	0	genome.wustl.edu	37	11	76938960	76938960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	76938960	76938960	G	A	SNP	GDPD4	ENST00000376217	human	ensembl	74_37	-1	known	missense	c.1474	p.R492W	0.344	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD4	HGNC	ENSG00000178795				104	0	0	83	22	20.9524
PDDC1	0	genome.wustl.edu	37	11	774114	774114	+	Splice_Site	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	774114	774114	C	A	SNP	PDDC1	ENST00000397472	human	ensembl	74_37	-1	known	splice_site	c.142-1	e3-1	1.000	-	-	-	no_errors	PDDC1	HGNC	ENSG00000177225				53	0	0	47	9	16.0714
KCTD21	0	genome.wustl.edu	37	11	77885448	77885448	+	Silent	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	77885448	77885448	A	C	SNP	KCTD21	ENST00000340067	human	ensembl	74_37	-1	known	silent	c.153	p.R51	0.220	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD21	HGNC	ENSG00000188997				56	0	0	48	17	26.1538
NLRP10	0	genome.wustl.edu	37	11	7982583	7982583	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	7982583	7982583	G	A	SNP	NLRP10	ENST00000328600	human	ensembl	74_37	-1	known	silent	c.576	p.T192	0.002	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP10	HGNC	ENSG00000182261				64	0	0	50	6	10.7143
EIF3F	0	genome.wustl.edu	37	11	8009136	8009136	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	8009136	8009136	T	C	SNP	EIF3F	ENST00000537635	human	ensembl	74_37	+1	known	silent	c.282	p.G94	0.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	EIF3F	HGNC	ENSG00000175390				26	0	0	29	8	21.6216
ST5	0	genome.wustl.edu	37	11	8720766	8720766	+	Silent	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	8720766	8720766	C	A	SNP	ST5	ENST00000313726	human	ensembl	74_37	-1	known	silent	c.2892	p.V964	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444				36	0	0	40	7	14.8936
PIWIL4	0	genome.wustl.edu	37	11	94320238	94320238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	94320238	94320238	G	A	SNP	PIWIL4	ENST00000299001	human	ensembl	74_37	+1	known	missense	c.739	p.A247T	0.877	superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL4	HGNC	ENSG00000134627				135	0	0	113	21	15.6716
IPO7	0	genome.wustl.edu	37	11	9459747	9459747	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	9459747	9459747	C	T	SNP	IPO7	ENST00000379719	human	ensembl	74_37	+1	known	silent	c.2610	p.N870	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO7	HGNC	ENSG00000205339				127	0	0	108	23	17.5573
CLEC7A	0	genome.wustl.edu	37	12	10278042	10278042	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	10278042	10278042	G	T	SNP	CLEC7A	ENST00000304084	human	ensembl	74_37	-1	known	missense	c.346	p.L116I	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC7A	HGNC	ENSG00000172243				39	0	0	28	4	12.5
PAH	0	genome.wustl.edu	37	12	103246714	103246714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	103246714	103246714	G	A	SNP	PAH	ENST00000553106	human	ensembl	74_37	-1	known	missense	c.721	p.R241C	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Phe-4-hydroxylase_tetra	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Phe-4-hydroxylase_tetra	-	no_errors	PAH	HGNC	ENSG00000171759				57	0	0	50	14	21.875
TMEM52B	0	genome.wustl.edu	37	12	10339021	10339021	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	10339021	10339021	T	C	SNP	TMEM52B	ENST00000381923	human	ensembl	74_37	+1	known	missense	c.140	p.L47S	0.998	NULL	NULL	-	no_errors	TMEM52B	HGNC	ENSG00000165685				60	0	0	54	14	20.5882
BTBD11	0	genome.wustl.edu	37	12	108004005	108004005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	108004005	108004005	C	T	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.1682	p.A561V	1.000	NULL	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				101	0	0	122	28	18.6667
YBX3	0	genome.wustl.edu	37	12	10865891	10865891	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	10865891	10865891	A	G	SNP	YBX3	ENST00000228251	human	ensembl	74_37	-1	known	silent	c.492	p.P164	0.332	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX3	HGNC	ENSG00000060138				128	0	0	145	24	14.2012
SELPLG	0	genome.wustl.edu	37	12	109017883	109017883	+	Silent	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	109017883	109017883	A	C	SNP	SELPLG	ENST00000550948	human	ensembl	74_37	-1	known	silent	c.201	p.T67	0.000	NULL	NULL	-	no_errors	SELPLG	HGNC	ENSG00000110876				55	0	0	50	10	16.6667
DAO	0	genome.wustl.edu	37	12	109286789	109286789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	109286789	109286789	C	T	SNP	DAO	ENST00000228476	human	ensembl	74_37	+1	known	missense	c.484	p.R162W	0.962	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	DAO	HGNC	ENSG00000110887				35	0	0	27	3	10
MMAB	0	genome.wustl.edu	37	12	109998868	109998868	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	109998868	109998868	G	A	SNP	MMAB	ENST00000545712	human	ensembl	74_37	-1	known	silent	c.561	p.A187	0.916	pfam_AdoCbl_synth_CblAdoTrfase-like,superfamily_AdoCbl_synth_CblAdoTrfase-like,tigrfam_AdoCbl_synth_CblAdoTrfase-like	pfam_AdoCbl_synth_CblAdoTrfase-like,superfamily_AdoCbl_synth_CblAdoTrfase-like,tigrfam_AdoCbl_synth_CblAdoTrfase-like	-	no_errors	MMAB	HGNC	ENSG00000139428				46	0	0	57	10	14.9254
TAS2R43	0	genome.wustl.edu	37	12	11244166	11244166	+	Silent	SNP	G	G	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	11244166	11244166	G	C	SNP	TAS2R43	ENST00000531678	human	ensembl	74_37	-1	known	silent	c.663	p.T221	0.185	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374				61	0	0	49	8	14.0351
TAS2R43	0	genome.wustl.edu	37	12	11244194	11244194	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	11244194	11244194	T	C	SNP	TAS2R43	ENST00000531678	human	ensembl	74_37	-1	known	missense	c.635	p.H212R	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374				30	0	0	28	5	15.1515
TBX3	0	genome.wustl.edu	37	12	115114185	115114185	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	115114185	115114185	T	C	SNP	TBX3	ENST00000257566	human	ensembl	74_37	-1	known	silent	c.1032	p.A344	0.002	pfam_TBX	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111				81	0	0	74	17	18.6813
BCL7A	0	genome.wustl.edu	37	12	122468634	122468634	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	122468634	122468634	A	G	SNP	BCL7A	ENST00000538010	human	ensembl	74_37	+1	known	missense	c.121	p.T41A	1.000	pfam_BCL7	pfam_BCL7	-	no_errors	BCL7A	HGNC	ENSG00000110987				70	0	0	78	12	13.3333
SBNO1	0	genome.wustl.edu	37	12	123810761	123810761	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	123810761	123810761	A	G	SNP	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	missense	c.1813	p.C605R	1.000	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697				192	0	0	123	25	16.8919
DNAH10	0	genome.wustl.edu	37	12	124409684	124409684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	124409684	124409684	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.11500	p.R3834C	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				62	0	0	52	7	11.8644
GPR19	0	genome.wustl.edu	37	12	12814881	12814881	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	12814881	12814881	C	T	SNP	GPR19	ENST00000332427	human	ensembl	74_37	-1	known	missense	c.502	p.V168I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR19	HGNC	ENSG00000183150				86	0	0	92	14	13.2075
CHFR	0	genome.wustl.edu	37	12	133438121	133438121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	133438121	133438121	G	A	SNP	CHFR	ENST00000266880	human	ensembl	74_37	-1	known	missense	c.719	p.A240V	0.002	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pfscan_FHA_dom,pfscan_Znf_RING	-	no_errors	CHFR	HGNC	ENSG00000072609				86	0	0	94	16	14.5455
LMO3	0	genome.wustl.edu	37	12	16753742	16753742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	16753742	16753742	C	T	SNP	LMO3	ENST00000541295	human	ensembl	74_37	-1	known	missense	c.107	p.R36Q	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO3	HGNC	ENSG00000048540				58	0	0	55	16	22.5352
ABCC9	0	genome.wustl.edu	37	12	21965082	21965082	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	21965082	21965082	A	G	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.4112	p.V1371A	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				87	0	0	40	9	18.3673
PKP2	0	genome.wustl.edu	37	12	33030839	33030839	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	33030839	33030839	G	A	SNP	PKP2	ENST00000070846	human	ensembl	74_37	-1	known	silent	c.975	p.A325	0.002	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP2	HGNC	ENSG00000057294				41	0	0	54	12	18.1818
RAPGEF3	0	genome.wustl.edu	37	12	48141517	48141517	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	48141517	48141517	G	T	SNP	RAPGEF3	ENST00000389212	human	ensembl	74_37	-1	known	missense	c.1451	p.P484H	0.997	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_DEP_dom,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF3	HGNC	ENSG00000079337				32	0	0	47	11	18.9655
LMBR1L	0	genome.wustl.edu	37	12	49504458	49504458	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	49504458	49504458	C	T	SNP	LMBR1L	ENST00000548983	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.065	-	-	-	no_errors	LMBR1L	HGNC	ENSG00000139636				10	0	0	11	4	26.6667
FMNL3	0	genome.wustl.edu	37	12	50048048	50048048	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	50048048	50048048	G	A	SNP	FMNL3	ENST00000293590	human	ensembl	74_37	-1	known	missense	c.998	p.S333L	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL3	HGNC	ENSG00000161791				42	0	0	36	11	23.4043
CSRNP2	0	genome.wustl.edu	37	12	51461619	51461619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	51461619	51461619	C	T	SNP	CSRNP2	ENST00000228515	human	ensembl	74_37	-1	known	missense	c.545	p.R182Q	1.000	prints_Cys/Ser-rich_nuc_prot	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP2	HGNC	ENSG00000110925				111	0	0	111	26	18.9781
AMHR2	0	genome.wustl.edu	37	12	53818998	53818998	+	Silent	SNP	C	C	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	53818998	53818998	C	G	SNP	AMHR2	ENST00000257863	human	ensembl	74_37	+1	known	silent	c.474	p.L158	0.063	pirsf_Anti-muellerian_hrmn_rcpt_II	pirsf_Anti-muellerian_hrmn_rcpt_II,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AMHR2	HGNC	ENSG00000135409				95	0	0	108	11	9.2437
NTF3	0	genome.wustl.edu	37	12	5603748	5603748	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	5603748	5603748	A	G	SNP	NTF3	ENST00000423158	human	ensembl	74_37	+1	known	missense	c.407	p.Y136C	0.843	pirsf_Nerve_growth_factor-like	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pirsf_Nerve_growth_factor-like,pfscan_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Neurotrophin-3	-	no_errors	NTF3	HGNC	ENSG00000185652				100	0	0	95	24	20.1681
ITGA7	0	genome.wustl.edu	37	12	56094925	56094925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	56094925	56094925	C	T	SNP	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	missense	c.428	p.R143Q	0.983	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424				108	0	0	79	23	22.549
ERBB3	0	genome.wustl.edu	37	12	56478854	56478854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	56478854	56478854	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.310	p.V104M	0.994	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				146	0	0	129	22	14.5695
ERBB3	0	genome.wustl.edu	37	12	56487212	56487212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	56487212	56487212	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.1358	p.R453H	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				98	0	0	82	14	14.5833
NACA	0	genome.wustl.edu	37	12	57115159	57115159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	57115159	57115159	G	A	SNP	NACA	ENST00000454682	human	ensembl	74_37	-1	known	missense	c.155	p.A52V	0.004	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACA	HGNC	ENSG00000196531				26	0	0	30	5	14.2857
ARHGAP9	0	genome.wustl.edu	37	12	57869299	57869299	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	57869299	57869299	G	A	SNP	ARHGAP9	ENST00000356411	human	ensembl	74_37	-1	known	missense	c.1468	p.P490S	0.155	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329				9	0	0	26	4	13.3333
DTX3	0	genome.wustl.edu	37	12	58001201	58001201	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	58001201	58001201	C	T	SNP	DTX3	ENST00000551632	human	ensembl	74_37	+1	known	silent	c.564	p.C188	0.917	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3	HGNC	ENSG00000178498				25	0	0	31	7	18.4211
NCAPD2	0	genome.wustl.edu	37	12	6619795	6619795	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	6619795	6619795	T	C	SNP	NCAPD2	ENST00000315579	human	ensembl	74_37	+1	known	missense	c.263	p.V88A	1.000	pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292				77	0	0	55	11	16.6667
ZFC3H1	0	genome.wustl.edu	37	12	72026034	72026034	+	Silent	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	72026034	72026034	A	C	SNP	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	silent	c.3078	p.T1026	0.999	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				167	0	0	94	16	14.5455
CD163L1	0	genome.wustl.edu	37	12	7526069	7526069	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	7526069	7526069	T	C	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.3577	p.S1193G	0.012	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				141	0	0	131	35	21.0843
NECAP1	0	genome.wustl.edu	37	12	8245509	8245509	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	8245509	8245509	T	C	SNP	NECAP1	ENST00000339754	human	ensembl	74_37	+1	known	silent	c.534	p.T178	0.297	NULL	pfam_NECAP-1	-	no_errors	NECAP1	HGNC	ENSG00000089818				178	0	0	170	37	17.8744
CCDC59	0	genome.wustl.edu	37	12	82750907	82750907	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	82750907	82750907	G	A	SNP	CCDC59	ENST00000256151	human	ensembl	74_37	-1	known	missense	c.296	p.A99V	1.000	prints_rRNA_processing	pfam_rRNA_processing,prints_rRNA_processing	-	no_errors	CCDC59	HGNC	ENSG00000133773				130	0	0	114	30	20.8333
DCN	0	genome.wustl.edu	37	12	91546948	91546948	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	91546948	91546948	G	A	SNP	DCN	ENST00000052754	human	ensembl	74_37	-1	known	missense	c.671	p.T224M	1.000	smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	DCN	HGNC	ENSG00000011465				66	0	0	49	9	15.5172
PLXNC1	0	genome.wustl.edu	37	12	94563012	94563012	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	94563012	94563012	C	T	SNP	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	silent	c.1146	p.T382	0.981	superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				77	0	0	58	13	18.3099
WNK1	0	genome.wustl.edu	37	12	977715	977715	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	977715	977715	A	G	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	silent	c.3078	p.K1026	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				21	0	0	25	6	19.3548
TPP2	0	genome.wustl.edu	37	13	103288709	103288709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	103288709	103288709	G	A	SNP	TPP2	ENST00000376065	human	ensembl	74_37	+1	known	missense	c.1645	p.V549I	1.000	NULL	pfam_Peptidase_S8/S53_dom,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900				46	0	0	33	16	32.6531
BIVM	0	genome.wustl.edu	37	13	103459756	103459756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	103459756	103459756	C	T	SNP	BIVM	ENST00000257336	human	ensembl	74_37	+1	known	missense	c.139	p.P47S	0.389	NULL	NULL	-	no_errors	BIVM	HGNC	ENSG00000134897				58	0	0	59	8	11.9403
CARS2	0	genome.wustl.edu	37	13	111303398	111303398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	111303398	111303398	C	T	SNP	CARS2	ENST00000257347	human	ensembl	74_37	-1	known	missense	c.1037	p.R346Q	0.942	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS2	HGNC	ENSG00000134905				79	0	0	97	17	14.9123
MCF2L	0	genome.wustl.edu	37	13	113742894	113742894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	113742894	113742894	C	T	SNP	MCF2L	ENST00000375604	human	ensembl	74_37	+1	known	missense	c.2957	p.A986V	0.121	NULL	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	MCF2L	HGNC	ENSG00000126217				16	0	0	15	7	31.8182
PROZ	0	genome.wustl.edu	37	13	113812986	113812986	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	113812986	113812986	C	T	SNP	PROZ	ENST00000375547	human	ensembl	74_37	+1	known	silent	c.12	p.C4	0.004	pirsf_Pept_S1A_FX	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Peptidase_S1,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	PROZ	HGNC	ENSG00000126231				12	0	0	13	8	38.0952
GAS6	0	genome.wustl.edu	37	13	114535732	114535732	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	114535732	114535732	C	T	SNP	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	silent	c.957	p.P319	0.015	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				67	0	0	94	14	12.963
CHAMP1	0	genome.wustl.edu	37	13	115090019	115090019	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	115090019	115090019	G	A	SNP	CHAMP1	ENST00000361283	human	ensembl	74_37	+1	known	silent	c.702	p.P234	0.368	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CHAMP1	HGNC	ENSG00000198824				145	0	0	120	49	28.9941
XPO4	0	genome.wustl.edu	37	13	21417071	21417071	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	21417071	21417071	G	A	SNP	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	silent	c.690	p.A230	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953				46	0	0	24	7	22.5806
PAN3	0	genome.wustl.edu	37	13	28866563	28866563	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	28866563	28866563	T	C	SNP	PAN3	ENST00000380958	human	ensembl	74_37	+1	known	silent	c.2568	p.D856	0.954	NULL	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_dom	-	no_errors	PAN3	HGNC	ENSG00000152520				55	0	0	50	25	33.3333
MTUS2	0	genome.wustl.edu	37	13	29600668	29600668	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	29600668	29600668	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	silent	c.1863	p.S621	0.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				27	0	0	36	8	18.1818
EEF1DP3	0	genome.wustl.edu	37	13	32526924	32526924	+	RNA	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	32526924	32526924	G	A	SNP	EEF1DP3	ENST00000428783	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	EEF1DP3	HGNC	ENSG00000229715				12	0	0	16	4	20
STARD13	0	genome.wustl.edu	37	13	33701564	33701564	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	33701564	33701564	C	T	SNP	STARD13	ENST00000336934	human	ensembl	74_37	-1	known	missense	c.1868	p.R623H	1.000	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121				25	0	0	28	8	22.2222
POSTN	0	genome.wustl.edu	37	13	38164611	38164611	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	38164611	38164611	C	T	SNP	POSTN	ENST00000379747	human	ensembl	74_37	-1	known	silent	c.339	p.T113	0.011	pfam_FAS1_domain,superfamily_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_FAS1_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110				31	0	0	30	9	23.0769
TRPC4	0	genome.wustl.edu	37	13	38357396	38357396	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	38357396	38357396	T	C	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	silent	c.75	p.A25	0.995	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107				134	0	0	88	40	31.25
SPERT	0	genome.wustl.edu	37	13	46287396	46287396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	46287396	46287396	G	A	SNP	SPERT	ENST00000310521	human	ensembl	74_37	+1	known	missense	c.236	p.R79Q	0.635	NULL	NULL	-	no_errors	SPERT	HGNC	ENSG00000174015				63	0	0	96	12	11.1111
ZC3H13	0	genome.wustl.edu	37	13	46542002	46542002	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	46542002	46542002	G	A	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	nonsense	c.3958	p.Q1320*	0.997	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				70	0	0	68	22	24.4444
ATP7B	0	genome.wustl.edu	37	13	52518300	52518300	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	52518300	52518300	G	A	SNP	ATP7B	ENST00000242839	human	ensembl	74_37	-1	known	missense	c.3188	p.A1063V	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_Cation_transp_P-typ_ATPase_IB	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191				51	0	0	47	19	28.7879
HNRNPA1L2	0	genome.wustl.edu	37	13	53216744	53216744	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	53216744	53216744	G	A	SNP	HNRNPA1L2	ENST00000342657	human	ensembl	74_37	+1	known	silent	c.117	p.T39	0.976	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_HnRNPA1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA1L2	HGNC	ENSG00000139675				62	0	0	48	7	12.7273
PCDH17	0	genome.wustl.edu	37	13	58299326	58299326	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	58299326	58299326	G	T	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.3378	p.R1126S	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				242	0	0	205	51	19.9219
TBC1D4	0	genome.wustl.edu	37	13	76055811	76055811	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	76055811	76055811	T	C	SNP	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	silent	c.93	p.P31	0.263	smart_PTB/PI_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				24	0	0	16	11	40.7407
SLITRK6	0	genome.wustl.edu	37	13	86368486	86368486	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	86368486	86368486	T	G	SNP	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	missense	c.2158	p.S720R	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564				249	0	0	261	15	5.43478
SLITRK5	0	genome.wustl.edu	37	13	88330473	88330473	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	88330473	88330473	G	A	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.2830	p.D944N	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				126	0	0	120	41	25.4658
SOX21	0	genome.wustl.edu	37	13	95364182	95364182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	95364182	95364182	C	T	SNP	SOX21	ENST00000376945	human	ensembl	74_37	-1	known	missense	c.122	p.R41H	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,pfam_TF_SOX,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom,prints_Antifreeze_1	-	no_errors	SOX21	HGNC	ENSG00000125285				82	0	0	123	18	12.766
CLDN10	0	genome.wustl.edu	37	13	96205057	96205057	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	96205057	96205057	G	T	SNP	CLDN10	ENST00000299339	human	ensembl	74_37	+1	known	missense	c.50	p.G17V	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin10,prints_Claudin	-	no_errors	CLDN10	HGNC	ENSG00000134873				44	0	0	50	8	13.7931
FARP1	0	genome.wustl.edu	37	13	99093014	99093014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	99093014	99093014	G	A	SNP	FARP1	ENST00000376586	human	ensembl	74_37	+1	known	missense	c.2813	p.R938H	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FARP1	HGNC	ENSG00000152767				36	0	0	38	5	11.6279
CYP46A1	0	genome.wustl.edu	37	14	100191749	100191749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	100191749	100191749	C	T	SNP	CYP46A1	ENST00000261835	human	ensembl	74_37	+1	known	missense	c.1198	p.R400W	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP46A1	HGNC	ENSG00000036530				72	0	0	70	10	12.5
EML1	0	genome.wustl.edu	37	14	100377791	100377791	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	100377791	100377791	G	A	SNP	EML1	ENST00000334192	human	ensembl	74_37	+1	known	missense	c.1429	p.A477T	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629				98	0	0	79	16	16.8421
CEP170B	0	genome.wustl.edu	37	14	105353081	105353081	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	105353081	105353081	C	T	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	silent	c.2508	p.G836	0.007	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814				46	0	0	52	8	13.3333
AHNAK2	0	genome.wustl.edu	37	14	105409804	105409804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	105409804	105409804	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.11984	p.A3995V	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				293	0	0	304	49	13.881
OR5AU1	0	genome.wustl.edu	37	14	21623694	21623694	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	21623694	21623694	T	C	SNP	OR5AU1	ENST00000304418	human	ensembl	74_37	-1	known	missense	c.491	p.Y164C	0.924	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AU1	HGNC	ENSG00000169327				49	0	0	33	8	19.5122
MYH7	0	genome.wustl.edu	37	14	23886806	23886806	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	23886806	23886806	C	A	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.4259	p.R1420L	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				129	0	0	117	27	18.75
NGDN	0	genome.wustl.edu	37	14	23945486	23945486	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	23945486	23945486	C	T	SNP	NGDN	ENST00000408901	human	ensembl	74_37	+1	known	nonsense	c.583	p.R195*	1.000	NULL	pfam_Sas10/Utp3/C1D	-	no_errors	NGDN	HGNC	ENSG00000129460				65	0	0	50	16	24.2424
IPO4	0	genome.wustl.edu	37	14	24656743	24656743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	24656743	24656743	C	T	SNP	IPO4	ENST00000354464	human	ensembl	74_37	-1	known	missense	c.451	p.E151K	0.770	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	IPO4	HGNC	ENSG00000196497				119	0	0	110	23	17.2932
PRKD1	0	genome.wustl.edu	37	14	30047479	30047479	+	Splice_Site	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	30047479	30047479	A	G	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	splice_site	c.2520+2	e17+2	1.000	-	-	-	no_errors	PRKD1	HGNC	ENSG00000184304				28	0	0	14	4	22.2222
HECTD1	0	genome.wustl.edu	37	14	31592134	31592134	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	31592134	31592134	A	G	SNP	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	missense	c.5101	p.Y1701H	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				131	0	0	114	13	10.2362
HECTD1	0	genome.wustl.edu	37	14	31619373	31619373	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	31619373	31619373	A	G	SNP	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	missense	c.1987	p.W663R	1.000	superfamily_ARM-type_fold	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				177	0	0	131	33	20.122
HEATR5A	0	genome.wustl.edu	37	14	31856542	31856542	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	31856542	31856542	G	A	SNP	HEATR5A	ENST00000389961	human	ensembl	74_37	-1	known	silent	c.955	p.L319	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493				28	0	0	36	9	20
INSM2	0	genome.wustl.edu	37	14	36004422	36004422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	36004422	36004422	G	A	SNP	INSM2	ENST00000307169	human	ensembl	74_37	+1	known	missense	c.964	p.A322T	0.004	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	INSM2	HGNC	ENSG00000168348				46	0	0	56	11	16.4179
TRIM9	0	genome.wustl.edu	37	14	51561212	51561212	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	51561212	51561212	C	T	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.446	p.R149H	1.000	NULL	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				21	0	0	32	6	15.7895
SAMD4A	0	genome.wustl.edu	37	14	55203855	55203855	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	55203855	55203855	C	T	SNP	SAMD4A	ENST00000392067	human	ensembl	74_37	+1	known	nonsense	c.829	p.R277*	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4A	HGNC	ENSG00000020577				283	0	0	248	55	18.1518
SLC35F4	0	genome.wustl.edu	37	14	58038711	58038711	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	58038711	58038711	G	A	SNP	SLC35F4	ENST00000339762	human	ensembl	74_37	-1	known	silent	c.942	p.T314	0.001	pfam_DMT,pfam_SLC35_F1/F2/F6	pfam_DMT,pfam_SLC35_F1/F2/F6	-	no_errors	SLC35F4	HGNC	ENSG00000151812				24	0	0	11	4	26.6667
PCNXL4	0	genome.wustl.edu	37	14	60585059	60585059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	60585059	60585059	C	T	SNP	PCNXL4	ENST00000404681	human	ensembl	74_37	+1	known	missense	c.1591	p.R531C	0.952	NULL	pfam_Pecanex	-	no_errors	PCNXL4	HGNC	ENSG00000126773				14	0	0	15	6	28.5714
KCNH5	0	genome.wustl.edu	37	14	63269210	63269210	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	63269210	63269210	C	T	SNP	KCNH5	ENST00000322893	human	ensembl	74_37	-1	known	silent	c.1659	p.L553	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015				78	0	0	85	11	11.4583
ESR2	0	genome.wustl.edu	37	14	64749567	64749567	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	64749567	64749567	A	G	SNP	ESR2	ENST00000341099	human	ensembl	74_37	-1	known	missense	c.137	p.M46T	0.984	pfam_Estrogen_rcpt_beta_N	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Estrogen_rcpt_beta_N,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR2	HGNC	ENSG00000140009				89	0	0	91	15	14.1509
SRSF5	0	genome.wustl.edu	37	14	70237232	70237232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	70237232	70237232	G	A	SNP	SRSF5	ENST00000394366	human	ensembl	74_37	+1	novel	missense	c.415	p.A139T	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF5	HGNC	ENSG00000100650				62	0	0	34	10	22.7273
ADAM20	0	genome.wustl.edu	37	14	70990808	70990808	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	70990808	70990808	A	G	SNP	ADAM20	ENST00000256389	human	ensembl	74_37	-1	known	missense	c.817	p.S273P	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007				40	0	0	24	4	14.2857
DCAF4	0	genome.wustl.edu	37	14	73422258	73422258	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	73422258	73422258	T	C	SNP	DCAF4	ENST00000358377	human	ensembl	74_37	+1	known	missense	c.1033	p.S345P	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4	HGNC	ENSG00000119599				189	0	0	171	24	12.3077
PAPLN	0	genome.wustl.edu	37	14	73721644	73721644	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	73721644	73721644	G	A	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	silent	c.1545	p.P515	0.015	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				44	0	0	46	11	19.2982
YLPM1	0	genome.wustl.edu	37	14	75265236	75265236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	75265236	75265236	G	A	SNP	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	missense	c.3236	p.R1079Q	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				83	0	0	70	15	17.6471
TMED10	0	genome.wustl.edu	37	14	75614415	75614415	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	75614415	75614415	G	A	SNP	TMED10	ENST00000303575	human	ensembl	74_37	-1	known	silent	c.363	p.L121	1.000	pfam_GOLD,pfscan_GOLD	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED10	HGNC	ENSG00000170348				192	0	0	170	40	19.0476
IFT43	0	genome.wustl.edu	37	14	76548754	76548754	+	RNA	SNP	A	A	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	76548754	76548754	A	T	SNP	IFT43	ENST00000553438	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	IFT43	HGNC	ENSG00000119650				103	0	0	63	23	26.7442
PSMC1	0	genome.wustl.edu	37	14	90734679	90734679	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	90734679	90734679	G	A	SNP	PSMC1	ENST00000261303	human	ensembl	74_37	+1	known	missense	c.803	p.R268Q	1.000	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DUF815,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DUF815,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC1	HGNC	ENSG00000100764				68	0	0	58	7	10.7692
TTC7B	0	genome.wustl.edu	37	14	91196513	91196513	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	91196513	91196513	T	C	SNP	TTC7B	ENST00000357056	human	ensembl	74_37	-1	known	missense	c.604	p.S202G	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914				92	0	0	62	18	22.5
CCDC88C	0	genome.wustl.edu	37	14	91744409	91744409	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	91744409	91744409	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.4915	p.G1639R	0.513	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				19	0	0	21	2	8.69565
ITPK1	0	genome.wustl.edu	37	14	93412766	93412766	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	93412766	93412766	G	A	SNP	ITPK1	ENST00000267615	human	ensembl	74_37	-1	known	nonsense	c.811	p.Q271*	1.000	pfam_Inositol_tetrakis-P_1-kinase	pfam_Inositol_tetrakis-P_1-kinase	-	no_errors	ITPK1	HGNC	ENSG00000100605				95	0	0	107	13	10.8333
CLMN	0	genome.wustl.edu	37	14	95786068	95786068	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	95786068	95786068	A	G	SNP	CLMN	ENST00000298912	human	ensembl	74_37	-1	known	missense	c.62	p.I21T	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959				16	0	0	28	5	15.1515
BDKRB1	0	genome.wustl.edu	37	14	96730468	96730468	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	96730468	96730468	G	A	SNP	BDKRB1	ENST00000216629	human	ensembl	74_37	+1	known	missense	c.449	p.R150Q	0.024	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Brdyknn_1_rcpt,prints_GPCR_Rhodpsn,prints_Brdyknn_rcpt	-	no_errors	BDKRB1	HGNC	ENSG00000100739				82	0	0	115	29	20.1389
BCL11B	0	genome.wustl.edu	37	14	99641328	99641328	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	99641328	99641328	G	A	SNP	BCL11B	ENST00000357195	human	ensembl	74_37	-1	known	silent	c.1845	p.A615	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11B	HGNC	ENSG00000127152				30	0	0	40	15	27.2727
DNM1P47	0	genome.wustl.edu	37	15	102294715	102294715	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	102294715	102294715	C	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				12	0	0	13	7	35
SNHG14	0	genome.wustl.edu	37	15	25444530	25444530	+	RNA	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	25444530	25444530	T	C	SNP	SNHG14	ENST00000424208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				111	0	0	109	8	6.83761
SPTBN5	0	genome.wustl.edu	37	15	42180139	42180139	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	42180139	42180139	T	C	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	missense	c.646	p.I216V	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877				14	0	0	21	3	12.5
PDIA3	0	genome.wustl.edu	37	15	44058951	44058951	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	44058951	44058951	C	A	SNP	PDIA3	ENST00000300289	human	ensembl	74_37	+1	known	missense	c.871	p.L291M	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA3	HGNC	ENSG00000167004				24	0	0	27	7	20.5882
FRMD5	0	genome.wustl.edu	37	15	44175999	44175999	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	44175999	44175999	A	G	SNP	FRMD5	ENST00000417257	human	ensembl	74_37	-1	known	missense	c.1037	p.M346T	1.000	pfam_FERM-adjacent	pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FRMD5	HGNC	ENSG00000171877				90	0	0	91	11	10.7843
FBN1	0	genome.wustl.edu	37	15	48703398	48703398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	48703398	48703398	C	T	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.8405	p.G2802D	1.000	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				107	0	0	69	18	20.6897
SHC4	0	genome.wustl.edu	37	15	49254719	49254719	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	49254719	49254719	A	C	SNP	SHC4	ENST00000332408	human	ensembl	74_37	-1	known	missense	c.494	p.L165R	0.088	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634				49	0	0	66	9	12
MYO5A	0	genome.wustl.edu	37	15	52668649	52668649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	52668649	52668649	C	T	SNP	MYO5A	ENST00000358212	human	ensembl	74_37	-1	known	missense	c.2315	p.R772Q	1.000	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535				47	0	0	42	7	14.2857
ZNF280D	0	genome.wustl.edu	37	15	56968927	56968927	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	56968927	56968927	A	C	SNP	ZNF280D	ENST00000267807	human	ensembl	74_37	-1	known	missense	c.1351	p.F451V	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280D	HGNC	ENSG00000137871				74	0	0	48	9	15.7895
TLN2	0	genome.wustl.edu	37	15	63029211	63029211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	63029211	63029211	G	A	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.3493	p.A1165T	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				46	0	0	48	18	27.2727
SPG21	0	genome.wustl.edu	37	15	65273318	65273318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	65273318	65273318	C	T	SNP	SPG21	ENST00000204566	human	ensembl	74_37	-1	known	missense	c.109	p.A37T	1.000	NULL	pfam_AB_hydrolase_1	-	no_errors	SPG21	HGNC	ENSG00000090487				69	0	0	58	16	21.6216
MEGF11	0	genome.wustl.edu	37	15	66262946	66262946	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	66262946	66262946	G	A	SNP	MEGF11	ENST00000409699	human	ensembl	74_37	-1	known	nonsense	c.844	p.Q282*	1.000	pfam_EGF_laminin,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890				27	0	0	35	9	20.4545
LCTL	0	genome.wustl.edu	37	15	66850103	66850103	+	Silent	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	66850103	66850103	G	T	SNP	LCTL	ENST00000341509	human	ensembl	74_37	-1	known	silent	c.879	p.P293	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCTL	HGNC	ENSG00000188501				154	0	0	147	10	6.36943
HCN4	0	genome.wustl.edu	37	15	73622033	73622033	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	73622033	73622033	C	T	SNP	HCN4	ENST00000261917	human	ensembl	74_37	-1	known	missense	c.1471	p.D491N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622				80	0	0	90	18	16.6667
SCAMP2	0	genome.wustl.edu	37	15	75141038	75141038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	75141038	75141038	C	T	SNP	SCAMP2	ENST00000268099	human	ensembl	74_37	-1	known	missense	c.637	p.D213N	1.000	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP2	HGNC	ENSG00000140497				31	0	0	26	5	16.129
PSMA4	0	genome.wustl.edu	37	15	78837238	78837238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	78837238	78837238	A	G	SNP	PSMA4	ENST00000044462	human	ensembl	74_37	+1	known	missense	c.315	p.I105M	0.973	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA4	HGNC	ENSG00000041357				56	0	0	27	10	27.027
CHRNA3	0	genome.wustl.edu	37	15	78888987	78888987	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	78888987	78888987	C	A	SNP	CHRNA3	ENST00000326828	human	ensembl	74_37	-1	known	nonsense	c.1477	p.G493*	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA3	HGNC	ENSG00000080644				45	0	0	48	9	15.7895
TMC3	0	genome.wustl.edu	37	15	81648919	81648919	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	81648919	81648919	G	A	SNP	TMC3	ENST00000359440	human	ensembl	74_37	-1	known	missense	c.760	p.R254C	1.000	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869				10	0	0	11	4	26.6667
MEX3B	0	genome.wustl.edu	37	15	82336301	82336301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	82336301	82336301	C	T	SNP	MEX3B	ENST00000329713	human	ensembl	74_37	-1	known	missense	c.910	p.G304R	0.997	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3B	HGNC	ENSG00000183496				81	0	0	93	17	15.4545
AKAP13	0	genome.wustl.edu	37	15	86124026	86124026	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	86124026	86124026	T	C	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	silent	c.2727	p.T909	0.001	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				71	0	0	67	10	12.987
RLBP1	0	genome.wustl.edu	37	15	89758344	89758344	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	89758344	89758344	C	T	SNP	RLBP1	ENST00000268125	human	ensembl	74_37	-1	known	missense	c.472	p.V158I	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran,pfscan_CRAL-TRIO_dom	-	no_errors	RLBP1	HGNC	ENSG00000140522				126	0	0	98	11	10.0917
TICRR	0	genome.wustl.edu	37	15	90118931	90118931	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	90118931	90118931	C	T	SNP	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	silent	c.114	p.F38	0.766	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534				18	0	0	12	3	20
MAN2A2	0	genome.wustl.edu	37	15	91452612	91452612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	91452612	91452612	G	A	SNP	MAN2A2	ENST00000360468	human	ensembl	74_37	+1	known	missense	c.1252	p.V418I	1.000	pfam_Glyco_hydro_38_N,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547				53	0	0	54	10	15.625
SV2B	0	genome.wustl.edu	37	15	91769857	91769857	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	91769857	91769857	G	A	SNP	SV2B	ENST00000330276	human	ensembl	74_37	+1	known	missense	c.364	p.D122N	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2B	HGNC	ENSG00000185518				61	0	0	50	5	9.09091
RHBDF1	0	genome.wustl.edu	37	16	114974	114974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	114974	114974	G	A	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	missense	c.40	p.R14C	1.000	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384				64	0	0	86	26	23.2143
MKL2	0	genome.wustl.edu	37	16	14355230	14355230	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	14355230	14355230	A	G	SNP	MKL2	ENST00000341243	human	ensembl	74_37	+1	known	missense	c.3196	p.S1066G	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL2	HGNC	ENSG00000186260				77	0	0	71	11	13.4146
NOMO3	0	genome.wustl.edu	37	16	16349609	16349609	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	16349609	16349609	C	T	SNP	NOMO3	ENST00000399336	human	ensembl	74_37	+1	known	silent	c.996	p.T332	0.387	superfamily_CarboxyPept-like_regulatory	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO3	HGNC	ENSG00000103226				68	0	0	62	9	12.6761
TMC5	0	genome.wustl.edu	37	16	19451390	19451390	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	19451390	19451390	T	C	SNP	TMC5	ENST00000396229	human	ensembl	74_37	+1	known	silent	c.30	p.S10	0.002	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534				91	0	0	62	19	23.4568
DNAH3	0	genome.wustl.edu	37	16	20976519	20976519	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	20976519	20976519	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.8687	p.R2896H	0.980	superfamily_Prefoldin	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				148	0	0	162	34	17.3469
ZP2	0	genome.wustl.edu	37	16	21210127	21210127	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	21210127	21210127	G	T	SNP	ZP2	ENST00000219593	human	ensembl	74_37	-1	known	missense	c.1984	p.L662M	0.607	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP2	HGNC	ENSG00000103310				38	0	0	32	6	15.7895
PKD1	0	genome.wustl.edu	37	16	2139989	2139989	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	2139989	2139989	G	A	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	silent	c.12651	p.A4217	0.000	NULL	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				22	0	0	30	6	16.6667
HS3ST2	0	genome.wustl.edu	37	16	22926525	22926525	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	22926525	22926525	G	A	SNP	HS3ST2	ENST00000261374	human	ensembl	74_37	+1	known	missense	c.746	p.R249H	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST2	HGNC	ENSG00000122254				141	0	0	164	23	12.2995
USP31	0	genome.wustl.edu	37	16	23091458	23091458	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	23091458	23091458	A	T	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	missense	c.1985	p.V662D	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404				76	0	0	89	17	16.0377
CCNF	0	genome.wustl.edu	37	16	2505427	2505427	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	2505427	2505427	G	T	SNP	CCNF	ENST00000397066	human	ensembl	74_37	+1	known	missense	c.1747	p.G583C	1.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,pfam_F-box_dom,superfamily_Cyclin-like,superfamily_F-box_dom,smart_F-box_dom,smart_Cyclin-like,pfscan_F-box_dom	-	no_errors	CCNF	HGNC	ENSG00000162063				31	0	0	31	5	13.8889
LCMT1	0	genome.wustl.edu	37	16	25137305	25137305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	25137305	25137305	G	A	SNP	LCMT1	ENST00000380962	human	ensembl	74_37	+1	known	missense	c.134	p.R45Q	0.000	NULL	NULL	-	no_errors	LCMT1	HGNC	ENSG00000205629				15	0	0	14	4	22.2222
AQP8	0	genome.wustl.edu	37	16	25228664	25228664	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	25228664	25228664	G	T	SNP	AQP8	ENST00000219660	human	ensembl	74_37	+1	known	missense	c.158	p.C53F	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_8,prints_MIP	-	no_errors	AQP8	HGNC	ENSG00000103375				226	0	0	238	25	9.5057
TUFM	0	genome.wustl.edu	37	16	28855345	28855345	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	28855345	28855345	G	A	SNP	TUFM	ENST00000313511	human	ensembl	74_37	-1	known	missense	c.1000	p.R334W	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel,tigrfam_Transl_elong_EFTu/EF1A_bac/org	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFTu/EF1A_bac/org	-	no_errors	TUFM	HGNC	ENSG00000178952				60	0	0	60	8	11.7647
SEPHS2	0	genome.wustl.edu	37	16	30455823	30455823	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	30455823	30455823	T	C	SNP	SEPHS2	ENST00000542752	human	ensembl	74_37	-1	known	missense	c.1055	p.K352R	1.000	pfam_AIR_synth_C_dom,superfamily_AIR_synth_C_dom,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS2	HGNC	ENSG00000179918				64	0	0	66	19	22.3529
ITGAL	0	genome.wustl.edu	37	16	30521775	30521775	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	30521775	30521775	T	G	SNP	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	missense	c.2602	p.F868V	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAL	HGNC	ENSG00000005844				102	0	0	75	10	11.7647
PRR14	0	genome.wustl.edu	37	16	30666359	30666359	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	30666359	30666359	A	G	SNP	PRR14	ENST00000300835	human	ensembl	74_37	+1	known	silent	c.1068	p.R356	0.166	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858				61	0	0	75	23	23.4694
PRR14	0	genome.wustl.edu	37	16	30666362	30666362	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	30666362	30666362	A	G	SNP	PRR14	ENST00000300835	human	ensembl	74_37	+1	known	silent	c.1071	p.P357	0.117	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858				66	0	0	78	22	22
PRR14	0	genome.wustl.edu	37	16	30666716	30666716	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	30666716	30666716	A	G	SNP	PRR14	ENST00000300835	human	ensembl	74_37	+1	known	missense	c.1289	p.Q430R	0.996	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858				92	0	0	69	12	14.8148
STX1B	0	genome.wustl.edu	37	16	31004445	31004445	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	31004445	31004445	G	A	SNP	STX1B	ENST00000565419	human	ensembl	74_37	-1	putative	silent	c.792	p.S264	0.814	NULL	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX1B	HGNC	ENSG00000099365				74	0	0	96	21	17.9487
FUS	0	genome.wustl.edu	37	16	31196405	31196405	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	31196405	31196405	C	T	SNP	FUS	ENST00000254108	human	ensembl	74_37	+1	known	silent	c.669	p.G223	0.710	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	FUS	HGNC	ENSG00000089280				13	0	0	16	5	23.8095
CREBBP	0	genome.wustl.edu	37	16	3778452	3778452	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	3778452	3778452	T	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.6596	p.Q2199L	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				30	0	0	50	5	9.09091
C16orf78	0	genome.wustl.edu	37	16	49412460	49412460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	49412460	49412460	G	A	SNP	C16orf78	ENST00000299191	human	ensembl	74_37	+1	known	missense	c.350	p.S117N	0.052	NULL	NULL	-	no_errors	C16orf78	HGNC	ENSG00000166152				20	0	0	21	3	12.5
GPR114	0	genome.wustl.edu	37	16	57598979	57598979	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	57598979	57598979	G	A	SNP	GPR114	ENST00000340339	human	ensembl	74_37	+1	known	missense	c.463	p.V155I	0.079	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618				123	0	0	101	22	17.8862
GPR56	0	genome.wustl.edu	37	16	57693479	57693479	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	57693479	57693479	C	A	SNP	GPR56	ENST00000379696	human	ensembl	74_37	+1	known	missense	c.1459	p.L487I	1.000	pfam_GPCR_2_secretin-like,prints_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_orphan_rcpt_GPR56,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR56	HGNC	ENSG00000205336				101	0	0	114	17	12.9771
CNOT1	0	genome.wustl.edu	37	16	58576171	58576171	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	58576171	58576171	A	G	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	silent	c.4644	p.Y1548	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				90	0	0	56	11	16.4179
CDH11	0	genome.wustl.edu	37	16	65006930	65006930	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	65006930	65006930	G	C	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.1267	p.R423G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				55	0	0	35	7	16.6667
PDP2	0	genome.wustl.edu	37	16	66919107	66919107	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	66919107	66919107	G	A	SNP	PDP2	ENST00000311765	human	ensembl	74_37	+1	known	missense	c.920	p.R307H	0.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PDP2	HGNC	ENSG00000172840				60	0	0	48	22	31.4286
HSF4	0	genome.wustl.edu	37	16	67200243	67200243	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	67200243	67200243	G	A	SNP	HSF4	ENST00000264009	human	ensembl	74_37	+1	known	missense	c.506	p.R169Q	0.995	NULL	pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF4	HGNC	ENSG00000102878				18	0	0	17	5	22.7273
EXOC3L1	0	genome.wustl.edu	37	16	67219046	67219046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	67219046	67219046	G	A	SNP	EXOC3L1	ENST00000314586	human	ensembl	74_37	-1	known	missense	c.1742	p.T581M	0.000	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3L1	HGNC	ENSG00000179044				101	0	0	90	29	24.3697
CENPT	0	genome.wustl.edu	37	16	67862748	67862748	+	Splice_Site	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	67862748	67862748	T	G	SNP	CENPT	ENST00000219172	human	ensembl	74_37	-1	known	splice_site	c.1281-2	e11-2	0.866	-	-	-	no_errors	CENPT	HGNC	ENSG00000102901				76	0	0	87	10	10.3093
COG8	0	genome.wustl.edu	37	16	69369001	69369001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	69369001	69369001	C	T	SNP	COG8	ENST00000306875	human	ensembl	74_37	-1	known	missense	c.836	p.R279H	1.000	pfam_COG8,superfamily_Cullin_repeat-like_dom,pirsf_COG8_Metazoal_Plant	pfam_COG8,superfamily_Cullin_repeat-like_dom,pirsf_COG8_Metazoal_Plant	-	no_errors	COG8	HGNC	ENSG00000213380				46	0	0	39	9	18.75
NFAT5	0	genome.wustl.edu	37	16	69660352	69660352	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	69660352	69660352	T	C	SNP	NFAT5	ENST00000432919	human	ensembl	74_37	+1	known	silent	c.174	p.S58	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908				69	0	0	34	11	24.4444
WWP2	0	genome.wustl.edu	37	16	69942710	69942710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	69942710	69942710	C	T	SNP	WWP2	ENST00000356003	human	ensembl	74_37	+1	known	missense	c.961	p.H321Y	1.000	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	WWP2	HGNC	ENSG00000198373				93	0	0	95	21	18.1034
CLEC18A	0	genome.wustl.edu	37	16	69988310	69988310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	69988310	69988310	C	T	SNP	CLEC18A	ENST00000449317	human	ensembl	74_37	+1	known	missense	c.290	p.A97V	0.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EG-like_dom,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18A	HGNC	ENSG00000157322				64	0	0	69	8	10.3896
PDPR	0	genome.wustl.edu	37	16	70176194	70176194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	70176194	70176194	G	A	SNP	PDPR	ENST00000288050	human	ensembl	74_37	+1	known	missense	c.1373	p.R458H	1.000	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857				87	0	0	83	7	7.77778
MARVELD3	0	genome.wustl.edu	37	16	71668202	71668202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	71668202	71668202	C	T	SNP	MARVELD3	ENST00000567501	human	ensembl	74_37	+1	putative	missense	c.142	p.H48Y	0.996	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832				141	0	0	139	27	16.2651
ZFHX3	0	genome.wustl.edu	37	16	72827613	72827613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	72827613	72827613	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.8968	p.V2990I	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				124	0	0	96	24	20
GLG1	0	genome.wustl.edu	37	16	74525092	74525092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	74525092	74525092	C	T	SNP	GLG1	ENST00000205061	human	ensembl	74_37	-1	known	missense	c.1256	p.C419Y	1.000	pfam_Cys-rich_GLG1_repeat	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863				135	0	0	108	19	14.9606
ADAMTS18	0	genome.wustl.edu	37	16	77317937	77317937	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	77317937	77317937	C	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.3582	p.W1194C	1.000	pfam_PLAC,pfscan_PLAC	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				102	0	0	61	14	18.6667
HAGHL	0	genome.wustl.edu	37	16	784510	784510	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	784510	784510	C	T	SNP	HAGHL	ENST00000569604	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	HAGHL	HGNC	ENSG00000103253				10	0	0	11	4	26.6667
MSLN	0	genome.wustl.edu	37	16	815589	815589	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	815589	815589	G	C	SNP	MSLN	ENST00000382862	human	ensembl	74_37	+1	known	missense	c.767	p.G256A	0.007	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLN	HGNC	ENSG00000102854				45	0	0	41	8	16.3265
PLCG2	0	genome.wustl.edu	37	16	81969978	81969978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	81969978	81969978	C	T	SNP	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	missense	c.3047	p.T1016M	1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pirsf_PLC-gamma,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				54	0	0	49	4	7.54717
CPNE7	0	genome.wustl.edu	37	16	89653121	89653121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	89653121	89653121	G	A	SNP	CPNE7	ENST00000268720	human	ensembl	74_37	+1	known	missense	c.1049	p.R350H	1.000	superfamily_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE7	HGNC	ENSG00000178773				84	0	0	75	4	5.06329
DNAH9	0	genome.wustl.edu	37	17	11650994	11650994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	11650994	11650994	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.6521	p.R2174H	0.814	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				86	0	0	80	21	20.7921
MYO1C	0	genome.wustl.edu	37	17	1386933	1386933	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	1386933	1386933	G	A	SNP	MYO1C	ENST00000359786	human	ensembl	74_37	-1	known	silent	c.318	p.G106	0.066	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1C	HGNC	ENSG00000197879				17	0	0	13	4	23.5294
SCARF1	0	genome.wustl.edu	37	17	1548908	1548908	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	1548908	1548908	G	A	SNP	SCARF1	ENST00000263071	human	ensembl	74_37	-1	known	silent	c.84	p.H28	0.956	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF1	HGNC	ENSG00000074660				27	0	0	19	8	29.6296
TRIM16	0	genome.wustl.edu	37	17	15534998	15534998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	15534998	15534998	G	A	SNP	TRIM16	ENST00000336708	human	ensembl	74_37	-1	known	missense	c.1046	p.A349V	0.946	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM16	HGNC	ENSG00000221926				58	0	0	58	8	12.1212
MIEF2	0	genome.wustl.edu	37	17	18166044	18166044	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	18166044	18166044	T	C	SNP	MIEF2	ENST00000323019	human	ensembl	74_37	+1	known	missense	c.10	p.F4L	0.995	NULL	NULL	-	no_errors	MIEF2	HGNC	ENSG00000177427				28	0	0	30	10	25
MAPK7	0	genome.wustl.edu	37	17	19286450	19286450	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	19286450	19286450	G	A	SNP	MAPK7	ENST00000308406	human	ensembl	74_37	+1	known	missense	c.2357	p.G786D	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484				85	0	0	79	18	18.5567
TSR1	0	genome.wustl.edu	37	17	2234242	2234242	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	2234242	2234242	T	C	SNP	TSR1	ENST00000301364	human	ensembl	74_37	-1	known	missense	c.1658	p.E553G	1.000	pfam_BMS1_TSR1_C	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721				52	0	0	39	13	25
KIAA0100	0	genome.wustl.edu	37	17	26958685	26958685	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	26958685	26958685	G	A	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	missense	c.4111	p.R1371W	1.000	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				37	0	0	36	7	16.2791
SUPT6H	0	genome.wustl.edu	37	17	27000493	27000493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	27000493	27000493	G	A	SNP	SUPT6H	ENST00000314616	human	ensembl	74_37	+1	known	missense	c.74	p.R25Q	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111				39	0	0	34	4	10.5263
FAM222B	0	genome.wustl.edu	37	17	27086626	27086626	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	27086626	27086626	G	A	SNP	FAM222B	ENST00000341217	human	ensembl	74_37	-1	known	silent	c.351	p.D117	1.000	NULL	NULL	-	no_errors	FAM222B	HGNC	ENSG00000173065				29	0	0	19	3	13.6364
SSH2	0	genome.wustl.edu	37	17	27957928	27957928	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	27957928	27957928	G	A	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	silent	c.4203	p.H1401	0.990	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				172	0	0	144	47	24.6073
NF1	0	genome.wustl.edu	37	17	29576057	29576057	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	29576057	29576057	G	T	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	nonsense	c.4030	p.E1344*	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				123	0	0	76	17	18.2796
OR1D5	0	genome.wustl.edu	37	17	2966348	2966348	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	2966348	2966348	A	C	SNP	OR1D5	ENST00000575751	human	ensembl	74_37	-1	known	missense	c.554	p.L185R	0.637	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1D5	HGNC	ENSG00000262628				49	0	0	51	5	8.92857
ENSG00000263369	0	genome.wustl.edu	37	17	30433437	30433437	+	RNA	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	30433437	30433437	T	C	SNP	ENSG00000263369	ENST00000580412	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.754	-	-	-	no_errors	RP11-640N20.9	Clone_based_vega_gene	ENSG00000263369				42	0	0	22	9	29.0323
MYO1D	0	genome.wustl.edu	37	17	30821885	30821885	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	30821885	30821885	G	A	SNP	MYO1D	ENST00000318217	human	ensembl	74_37	-1	known	silent	c.2913	p.S971	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658				48	0	0	38	8	17.3913
TBC1D3	0	genome.wustl.edu	37	17	36339597	36339597	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	36339597	36339597	G	T	SNP	TBC1D3	ENST00000354664	human	ensembl	74_37	-1	known	missense	c.1060	p.Q354K	0.880	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3	HGNC	ENSG00000197681				8	0	0	6	4	40
PSMD3	0	genome.wustl.edu	37	17	38151523	38151523	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	38151523	38151523	G	A	SNP	PSMD3	ENST00000264639	human	ensembl	74_37	+1	known	silent	c.1191	p.R397	0.434	pfam_PCI_dom,smart_PCI_dom	pfam_26S_Psome_reg_C,pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD3	HGNC	ENSG00000108344				173	0	0	153	28	15.4696
KRT23	0	genome.wustl.edu	37	17	39092549	39092549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	39092549	39092549	G	A	SNP	KRT23	ENST00000209718	human	ensembl	74_37	-1	known	missense	c.307	p.R103C	0.009	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT23	HGNC	ENSG00000108244				126	0	0	112	23	17.037
KRT23	0	genome.wustl.edu	37	17	39092832	39092832	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	39092832	39092832	G	A	SNP	KRT23	ENST00000209718	human	ensembl	74_37	-1	known	silent	c.24	p.S8	0.992	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT23	HGNC	ENSG00000108244				44	0	0	75	10	11.7647
ATP6V0A1	0	genome.wustl.edu	37	17	40652943	40652943	+	Splice_Site	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	40652943	40652943	T	C	SNP	ATP6V0A1	ENST00000264649	human	ensembl	74_37	+1	known	splice_site	c.1917+2	e15+2	1.000	-	-	-	no_errors	ATP6V0A1	HGNC	ENSG00000033627				119	0	0	80	21	20.7921
TUBG1	0	genome.wustl.edu	37	17	40766300	40766300	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	40766300	40766300	C	T	SNP	TUBG1	ENST00000251413	human	ensembl	74_37	+1	known	missense	c.866	p.T289M	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBG1	HGNC	ENSG00000131462				74	0	0	77	18	18.9474
ETV4	0	genome.wustl.edu	37	17	41606988	41606988	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	41606988	41606988	G	A	SNP	ETV4	ENST00000319349	human	ensembl	74_37	-1	known	missense	c.1012	p.R338W	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,prints_Ets_dom,pfscan_Ets_dom	-	no_errors	ETV4	HGNC	ENSG00000175832				131	0	0	114	22	16.1765
MEOX1	0	genome.wustl.edu	37	17	41719304	41719304	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	41719304	41719304	A	G	SNP	MEOX1	ENST00000318579	human	ensembl	74_37	-1	known	missense	c.739	p.S247P	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MEOX1	HGNC	ENSG00000005102				135	0	0	129	15	10.4167
NAGS	0	genome.wustl.edu	37	17	42082082	42082082	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	42082082	42082082	G	A	SNP	NAGS	ENST00000293404	human	ensembl	74_37	+1	known	silent	c.51	p.P17	0.000	pirsf_GlcNAc_Synth_met	pfam_DUF619,superfamily_Asp/Glu/Uridylate_kinase,superfamily_Acyl_CoA_acyltransferase,pirsf_GlcNAc_Synth_met,pfscan_GNAT_dom	-	no_errors	NAGS	HGNC	ENSG00000161653				18	0	0	16	8	33.3333
ASB16-AS1	0	genome.wustl.edu	37	17	42254018	42254018	+	RNA	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	42254018	42254018	G	T	SNP	ASB16-AS1	ENST00000585457	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASB16-AS1	HGNC	ENSG00000267080				118	0	0	98	27	21.6
GPATCH8	0	genome.wustl.edu	37	17	42478563	42478563	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	42478563	42478563	T	C	SNP	GPATCH8	ENST00000591680	human	ensembl	74_37	-1	known	silent	c.882	p.P294	0.000	NULL	pfam_G_patch_dom,pfam_Znf_C2H2_jaz,smart_G_patch_dom,pfscan_Znf_C2H2,pfscan_G_patch_dom	-	no_errors	GPATCH8	HGNC	ENSG00000186566				188	0	0	135	25	15.625
KANSL1	0	genome.wustl.edu	37	17	44172020	44172020	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	44172020	44172020	A	G	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	missense	c.1337	p.V446A	1.000	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				137	1	0.724638	127	26	16.9935
WNT3	0	genome.wustl.edu	37	17	44847252	44847252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	44847252	44847252	G	A	SNP	WNT3	ENST00000225512	human	ensembl	74_37	-1	known	missense	c.485	p.A162V	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3	HGNC	ENSG00000108379				44	0	0	43	9	17.3077
RPRML	0	genome.wustl.edu	37	17	45056149	45056149	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	45056149	45056149	C	T	SNP	RPRML	ENST00000322329	human	ensembl	74_37	-1	known	silent	c.225	p.V75	1.000	NULL	NULL	-	no_errors	RPRML	HGNC	ENSG00000179673				15	0	0	25	6	19.3548
KPNB1	0	genome.wustl.edu	37	17	45750473	45750473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	45750473	45750473	C	T	SNP	KPNB1	ENST00000290158	human	ensembl	74_37	+1	known	missense	c.1637	p.A546V	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424				77	0	0	49	12	19.6721
ZMYND15	0	genome.wustl.edu	37	17	4647391	4647391	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	4647391	4647391	T	C	SNP	ZMYND15	ENST00000433935	human	ensembl	74_37	+1	known	missense	c.1484	p.V495A	1.000	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND15	HGNC	ENSG00000141497				17	0	0	4	5	55.5556
HOXB1	0	genome.wustl.edu	37	17	46608028	46608028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	46608028	46608028	G	A	SNP	HOXB1	ENST00000239174	human	ensembl	74_37	-1	known	missense	c.239	p.A80V	0.013	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB1	HGNC	ENSG00000120094				90	0	0	96	25	20.6612
ANKRD40	0	genome.wustl.edu	37	17	48777241	48777241	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	48777241	48777241	A	T	SNP	ANKRD40	ENST00000285243	human	ensembl	74_37	-1	known	missense	c.297	p.D99E	0.396	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945				32	0	0	25	8	24.2424
CA10	0	genome.wustl.edu	37	17	49713241	49713241	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	49713241	49713241	T	G	SNP	CA10	ENST00000340813	human	ensembl	74_37	-1	known	missense	c.782	p.K261T	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA10	HGNC	ENSG00000154975				64	0	0	40	6	13.0435
MRPS23	0	genome.wustl.edu	37	17	55917278	55917278	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	55917278	55917278	C	T	SNP	MRPS23	ENST00000313608	human	ensembl	74_37	-1	known	missense	c.439	p.V147I	0.000	NULL	pfam_Ribosomal_S23/S25_mit	-	no_errors	MRPS23	HGNC	ENSG00000181610				84	0	0	56	12	17.6471
LPO	0	genome.wustl.edu	37	17	56324919	56324919	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	56324919	56324919	G	A	SNP	LPO	ENST00000262290	human	ensembl	74_37	+1	known	missense	c.245	p.R82H	0.685	NULL	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419				94	0	0	83	11	11.7021
RNF43	0	genome.wustl.edu	37	17	56434721	56434721	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	56434721	56434721	T	C	SNP	RNF43	ENST00000581868	human	ensembl	74_37	-1	putative	missense	c.2035	p.T679A	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				25	0	0	24	3	11.1111
RPS6KB1	0	genome.wustl.edu	37	17	58024111	58024111	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	58024111	58024111	A	G	SNP	RPS6KB1	ENST00000225577	human	ensembl	74_37	+1	known	missense	c.1540	p.I514V	1.000	pirsf_Ribosomal_S6_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase,pfscan_Prot_kinase_dom	-	no_errors	RPS6KB1	HGNC	ENSG00000108443				85	0	0	79	13	14.1304
ENSG00000267207	0	genome.wustl.edu	37	17	59147479	59147479	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	59147479	59147479	C	T	SNP	ENSG00000267207	ENST00000588604	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-264B14.1	Clone_based_vega_gene	ENSG00000267207				111	0	0	91	13	12.5
ACE	0	genome.wustl.edu	37	17	61557711	61557711	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	61557711	61557711	G	A	SNP	ACE	ENST00000290866	human	ensembl	74_37	+1	known	silent	c.669	p.T223	0.078	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640				93	0	0	71	8	10.1266
MAP3K3	0	genome.wustl.edu	37	17	61712155	61712155	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	61712155	61712155	A	T	SNP	MAP3K3	ENST00000361357	human	ensembl	74_37	+1	known	missense	c.213	p.K71N	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K3	HGNC	ENSG00000198909				109	0	0	73	18	19.7802
ERN1	0	genome.wustl.edu	37	17	62131738	62131738	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	62131738	62131738	C	T	SNP	ERN1	ENST00000433197	human	ensembl	74_37	-1	known	missense	c.1825	p.A609T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_KEN_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN1	HGNC	ENSG00000178607				18	0	0	15	5	25
CACNG1	0	genome.wustl.edu	37	17	65040929	65040929	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	65040929	65040929	C	T	SNP	CACNG1	ENST00000226021	human	ensembl	74_37	+1	known	silent	c.153	p.F51	0.660	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g1su	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g1su,prints_VDCC_gsu	-	no_errors	CACNG1	HGNC	ENSG00000108878				54	0	0	57	11	16.1765
HELZ	0	genome.wustl.edu	37	17	65199438	65199438	+	Silent	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	65199438	65199438	G	T	SNP	HELZ	ENST00000358691	human	ensembl	74_37	-1	known	silent	c.369	p.S123	0.999	NULL	pfam_Znf_CCCH,superfamily_P-loop_NTPase,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265				100	1	0.990099	77	10	11.4943
PSMD12	0	genome.wustl.edu	37	17	65344745	65344745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	65344745	65344745	C	T	SNP	PSMD12	ENST00000356126	human	ensembl	74_37	-1	known	missense	c.431	p.R144Q	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	PSMD12	HGNC	ENSG00000197170				68	0	0	60	7	10.4478
ABCA6	0	genome.wustl.edu	37	17	67099024	67099024	+	Silent	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	67099024	67099024	A	C	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	silent	c.2826	p.T942	0.001	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				37	0	0	16	4	20
ABCA10	0	genome.wustl.edu	37	17	67183901	67183901	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	67183901	67183901	G	T	SNP	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	missense	c.2251	p.L751I	0.988	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				80	0	0	70	17	19.5402
BCL6B	0	genome.wustl.edu	37	17	6930865	6930865	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	6930865	6930865	G	A	SNP	BCL6B	ENST00000293805	human	ensembl	74_37	+1	known	missense	c.1367	p.R456Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6B	HGNC	ENSG00000161940				63	0	0	72	20	21.7391
SDK2	0	genome.wustl.edu	37	17	71346827	71346827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	71346827	71346827	C	T	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	missense	c.5861	p.R1954Q	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188				71	0	0	66	10	13.1579
PHF23	0	genome.wustl.edu	37	17	7140781	7140781	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	7140781	7140781	G	A	SNP	PHF23	ENST00000320316	human	ensembl	74_37	-1	known	missense	c.82	p.R28W	0.447	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF23	HGNC	ENSG00000040633				152	0	0	74	17	18.6813
TMEM104	0	genome.wustl.edu	37	17	72781738	72781738	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	72781738	72781738	A	G	SNP	TMEM104	ENST00000335464	human	ensembl	74_37	+1	known	missense	c.163	p.M55V	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066				48	0	0	45	14	23.7288
TMEM104	0	genome.wustl.edu	37	17	72832492	72832492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	72832492	72832492	G	A	SNP	TMEM104	ENST00000335464	human	ensembl	74_37	+1	known	missense	c.1157	p.R386H	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066				148	0	0	131	28	17.6101
C17orf74	0	genome.wustl.edu	37	17	7329699	7329699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	7329699	7329699	G	A	SNP	C17orf74	ENST00000333870	human	ensembl	74_37	+1	known	missense	c.389	p.R130H	0.000	NULL	NULL	-	no_errors	C17orf74	HGNC	ENSG00000184560				104	0	0	128	26	16.8831
TMEM102	0	genome.wustl.edu	37	17	7339811	7339811	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	7339811	7339811	T	C	SNP	TMEM102	ENST00000323206	human	ensembl	74_37	+1	known	silent	c.513	p.R171	0.000	NULL	NULL	-	no_errors	TMEM102	HGNC	ENSG00000181284				83	0	0	65	12	15.5844
GALR2	0	genome.wustl.edu	37	17	74072970	74072970	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	74072970	74072970	G	A	SNP	GALR2	ENST00000329003	human	ensembl	74_37	+1	known	missense	c.622	p.A208T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_GAL2_rcpt	-	no_errors	GALR2	HGNC	ENSG00000182687				35	0	0	40	7	14.8936
KDM6B	0	genome.wustl.edu	37	17	7756403	7756403	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	7756403	7756403	C	A	SNP	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	missense	c.4696	p.R1566S	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				60	0	0	39	11	22
CCDC40	0	genome.wustl.edu	37	17	78059814	78059814	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	78059814	78059814	G	T	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.2248	p.G750W	0.994	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				87	0	0	78	11	12.3596
CHD3	0	genome.wustl.edu	37	17	7813796	7813796	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	7813796	7813796	C	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.5641	p.R1881C	1.000	pfam_CHD_C2	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				97	0	0	92	13	12.381
SLC26A11	0	genome.wustl.edu	37	17	78210884	78210884	+	Silent	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	78210884	78210884	C	A	SNP	SLC26A11	ENST00000361193	human	ensembl	74_37	+1	known	silent	c.894	p.S298	0.995	pfam_Sulph_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A11	HGNC	ENSG00000181045				42	0	0	53	10	15.873
ENDOV	0	genome.wustl.edu	37	17	78395647	78395647	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	78395647	78395647	G	A	SNP	ENDOV	ENST00000518137	human	ensembl	74_37	+1	known	missense	c.248	p.R83H	0.930	pfam_Endonuclease-V	pfam_Endonuclease-V	-	no_errors	ENDOV	HGNC	ENSG00000173818				14	0	0	16	5	23.8095
GUCY2D	0	genome.wustl.edu	37	17	7915595	7915595	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	7915595	7915595	A	G	SNP	GUCY2D	ENST00000254854	human	ensembl	74_37	+1	known	missense	c.1883	p.Q628R	0.882	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518				93	0	0	80	12	13.0435
ACTG1	0	genome.wustl.edu	37	17	79477815	79477815	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	79477815	79477815	G	A	SNP	ACTG1	ENST00000331925	human	ensembl	74_37	-1	known	silent	c.1029	p.G343	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTG1	HGNC	ENSG00000184009				132	0	0	112	25	18.2482
P4HB	0	genome.wustl.edu	37	17	79804412	79804412	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	79804412	79804412	G	A	SNP	P4HB	ENST00000331483	human	ensembl	74_37	-1	known	missense	c.949	p.L317F	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	P4HB	HGNC	ENSG00000185624				91	0	0	98	14	12.5
FASN	0	genome.wustl.edu	37	17	80045689	80045689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	80045689	80045689	G	A	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	missense	c.2915	p.P972L	0.001	smart_PKS_dehydratase	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				51	0	0	37	10	21.2766
PER1	0	genome.wustl.edu	37	17	8047100	8047100	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	8047100	8047100	C	T	SNP	PER1	ENST00000317276	human	ensembl	74_37	-1	known	silent	c.2556	p.A852	0.524	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094				30	0	0	40	9	18.3673
ARHGEF15	0	genome.wustl.edu	37	17	8218518	8218518	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	8218518	8218518	C	A	SNP	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	missense	c.1183	p.L395M	0.951	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				25	0	0	40	9	18.3673
ARHGEF15	0	genome.wustl.edu	37	17	8221918	8221918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	8221918	8221918	C	T	SNP	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	missense	c.1810	p.R604C	1.000	superfamily_DH-domain	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				63	0	0	59	14	19.1781
RIOK3	0	genome.wustl.edu	37	18	21044006	21044006	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	21044006	21044006	G	A	SNP	RIOK3	ENST00000339486	human	ensembl	74_37	+1	known	silent	c.255	p.Q85	1.000	pirsf_Ser/Thr_kinase_Rio3	pfam_RIO-like_kinase,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio3	-	no_errors	RIOK3	HGNC	ENSG00000101782				89	0	0	68	17	20
C18orf8	0	genome.wustl.edu	37	18	21095895	21095895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	21095895	21095895	G	A	SNP	C18orf8	ENST00000269221	human	ensembl	74_37	+1	known	missense	c.484	p.E162K	1.000	superfamily_WD40_repeat_dom	pfam_Mic1,superfamily_WD40_repeat_dom	-	no_errors	C18orf8	HGNC	ENSG00000141452				118	0	0	97	18	15.6522
DSC2	0	genome.wustl.edu	37	18	28654723	28654723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	28654723	28654723	C	T	SNP	DSC2	ENST00000280904	human	ensembl	74_37	-1	known	missense	c.1814	p.G605D	0.947	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755				31	0	0	34	6	15
ZSCAN30	0	genome.wustl.edu	37	18	32844198	32844198	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	32844198	32844198	T	G	SNP	ZSCAN30	ENST00000333206	human	ensembl	74_37	-1	known	missense	c.119	p.N40T	0.000	superfamily_Retrov_capsid_C	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN30	HGNC	ENSG00000186814				54	0	0	63	8	11.2676
TGIF1	0	genome.wustl.edu	37	18	3452168	3452168	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	3452168	3452168	C	T	SNP	TGIF1	ENST00000330513	human	ensembl	74_37	+1	known	missense	c.191	p.P64L	0.000	NULL	pfam_Homeobox_KN_domain,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF1	HGNC	ENSG00000177426				62	0	0	91	20	18.018
SLC14A2	0	genome.wustl.edu	37	18	43204714	43204714	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	43204714	43204714	A	G	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	missense	c.85	p.S29G	0.101	NULL	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				111	0	0	85	17	16.6667
CXXC1	0	genome.wustl.edu	37	18	47810401	47810401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	47810401	47810401	C	T	SNP	CXXC1	ENST00000412036	human	ensembl	74_37	-1	known	missense	c.1288	p.G430S	1.000	pfam_CpG-bd_C	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832				88	0	0	96	24	20
ENSG00000173213	0	genome.wustl.edu	37	18	48112	48112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	48112	48112	C	T	SNP	ENSG00000173213	ENST00000308911	human	ensembl	74_37	-1	known	missense	c.613	p.E205K	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	RP11-683L23.1	Clone_based_vega_gene	ENSG00000173213				107	0	0	101	18	15.1261
ALPK2	0	genome.wustl.edu	37	18	56184321	56184321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	56184321	56184321	G	A	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	missense	c.5759	p.T1920M	1.000	superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				98	0	0	81	18	18.1818
PHLPP1	0	genome.wustl.edu	37	18	60645706	60645706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	60645706	60645706	C	T	SNP	PHLPP1	ENST00000262719	human	ensembl	74_37	+1	known	missense	c.4196	p.A1399V	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913				14	0	0	25	5	16.6667
PARD6G	0	genome.wustl.edu	37	18	77917987	77917987	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	77917987	77917987	C	T	SNP	PARD6G	ENST00000353265	human	ensembl	74_37	-1	known	silent	c.798	p.S266	0.002	NULL	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6G	HGNC	ENSG00000178184				27	0	0	28	11	28.2051
ABCA7	0	genome.wustl.edu	37	19	1049320	1049320	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	1049320	1049320	G	A	SNP	ABCA7	ENST00000263094	human	ensembl	74_37	+1	known	silent	c.2436	p.L812	1.000	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687				121	0	0	110	22	16.6667
SLC44A2	0	genome.wustl.edu	37	19	10738649	10738649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	10738649	10738649	G	A	SNP	SLC44A2	ENST00000335757	human	ensembl	74_37	+1	known	missense	c.214	p.E72K	1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC	ENSG00000129353				40	0	0	34	4	10.5263
KANK2	0	genome.wustl.edu	37	19	11303908	11303908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	11303908	11303908	G	A	SNP	KANK2	ENST00000432929	human	ensembl	74_37	-1	known	missense	c.848	p.A283V	0.976	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256				45	0	0	53	10	15.873
RGL3	0	genome.wustl.edu	37	19	11508131	11508131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	11508131	11508131	C	T	SNP	RGL3	ENST00000393423	human	ensembl	74_37	-1	known	missense	c.1907	p.R636Q	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517				71	0	0	85	18	17.4757
ZNF441	0	genome.wustl.edu	37	19	11891996	11891996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	11891996	11891996	G	A	SNP	ZNF441	ENST00000357901	human	ensembl	74_37	+1	known	missense	c.1357	p.G453R	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044				67	0	0	38	8	17.3913
ZNF563	0	genome.wustl.edu	37	19	12430297	12430297	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	12430297	12430297	C	T	SNP	ZNF563	ENST00000293725	human	ensembl	74_37	-1	known	missense	c.542	p.R181H	0.005	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF563	HGNC	ENSG00000188868				128	0	0	95	24	20.1681
PRDX2	0	genome.wustl.edu	37	19	12911023	12911023	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	12911023	12911023	G	A	SNP	PRDX2	ENST00000301522	human	ensembl	74_37	-1	known	silent	c.348	p.G116	0.535	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX2	HGNC	ENSG00000167815				104	0	0	90	23	20.354
MAST1	0	genome.wustl.edu	37	19	12979551	12979551	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	12979551	12979551	G	A	SNP	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	silent	c.2661	p.A887	0.040	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				150	0	0	164	12	6.81818
LPHN1	0	genome.wustl.edu	37	19	14270398	14270398	+	Splice_Site	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	14270398	14270398	T	G	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	splice_site	c.1855-2	e10-2	1.000	-	-	-	no_errors	LPHN1	HGNC	ENSG00000072071				80	0	0	76	10	11.6279
NWD1	0	genome.wustl.edu	37	19	16926067	16926067	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	16926067	16926067	A	T	SNP	NWD1	ENST00000339803	human	ensembl	74_37	+1	known	missense	c.4217	p.D1406V	0.753	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				59	0	0	56	5	8.19672
CPAMD8	0	genome.wustl.edu	37	19	17088319	17088319	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	17088319	17088319	G	T	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.1758	p.D586E	0.408	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				49	0	0	43	3	6.52174
MYO9B	0	genome.wustl.edu	37	19	17213299	17213299	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	17213299	17213299	G	A	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	missense	c.772	p.A258T	0.999	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				18	0	0	35	6	14.6341
UNC13A	0	genome.wustl.edu	37	19	17783305	17783305	+	Splice_Site	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	17783305	17783305	C	A	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	splice_site	c.417-1	e5-1	1.000	-	-	-	no_errors	UNC13A	HGNC	ENSG00000130477				43	0	0	35	7	16.6667
CCDC124	0	genome.wustl.edu	37	19	18047384	18047384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	18047384	18047384	G	A	SNP	CCDC124	ENST00000445755	human	ensembl	74_37	+1	known	missense	c.155	p.R52H	1.000	NULL	pfam_DUF1014,superfamily_HMG_box_dom	-	no_errors	CCDC124	HGNC	ENSG00000007080				15	0	0	12	3	20
KIAA1683	0	genome.wustl.edu	37	19	18378125	18378125	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	18378125	18378125	C	T	SNP	KIAA1683	ENST00000392413	human	ensembl	74_37	-1	known	silent	c.225	p.A75	0.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518				81	0	0	99	26	20.8
KLHL26	0	genome.wustl.edu	37	19	18778628	18778628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	18778628	18778628	G	A	SNP	KLHL26	ENST00000300976	human	ensembl	74_37	+1	known	missense	c.421	p.V141M	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487				63	0	0	90	11	10.8911
HAPLN4	0	genome.wustl.edu	37	19	19371714	19371714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	19371714	19371714	C	T	SNP	HAPLN4	ENST00000291481	human	ensembl	74_37	-1	known	missense	c.392	p.R131H	0.996	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN4	HGNC	ENSG00000187664				76	0	0	84	8	8.69565
ZNF208	0	genome.wustl.edu	37	19	22154923	22154923	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	22154923	22154923	T	G	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.2913	p.K971N	0.844	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				26	0	0	19	5	20.8333
ZNF729	0	genome.wustl.edu	37	19	22499436	22499436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	22499436	22499436	G	A	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.3217	p.E1073K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				39	0	0	23	7	23.3333
ZNF99	0	genome.wustl.edu	37	19	22941044	22941044	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	22941044	22941044	T	A	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	missense	c.1394	p.K465M	0.011	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973				36	0	0	32	4	11.1111
SPPL2B	0	genome.wustl.edu	37	19	2353033	2353033	+	RNA	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	2353033	2353033	G	A	SNP	SPPL2B	ENST00000452401	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	SPPL2B	HGNC	ENSG00000005206				34	0	0	33	2	5.71429
ZNF536	0	genome.wustl.edu	37	19	30935211	30935211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	30935211	30935211	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.742	p.V248I	0.623	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				16	0	0	20	5	20
CHST8	0	genome.wustl.edu	37	19	34263898	34263898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	34263898	34263898	G	A	SNP	CHST8	ENST00000262622	human	ensembl	74_37	+1	known	missense	c.1205	p.R402H	0.998	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST8	HGNC	ENSG00000124302				37	0	0	45	12	21.0526
MAG	0	genome.wustl.edu	37	19	35800998	35800998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	35800998	35800998	C	T	SNP	MAG	ENST00000392213	human	ensembl	74_37	+1	known	missense	c.1453	p.R485C	0.994	NULL	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MAG	HGNC	ENSG00000105695				58	0	0	86	6	6.52174
RBM42	0	genome.wustl.edu	37	19	36128361	36128361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	36128361	36128361	C	T	SNP	RBM42	ENST00000262633	human	ensembl	74_37	+1	known	missense	c.1348	p.R450C	0.966	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM42	HGNC	ENSG00000126254				68	0	0	86	15	14.8515
IGFLR1	0	genome.wustl.edu	37	19	36232025	36232025	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	36232025	36232025	C	T	SNP	IGFLR1	ENST00000246532	human	ensembl	74_37	-1	known	silent	c.57	p.P19	0.000	NULL	superfamily_DEATH-like_dom	-	no_errors	IGFLR1	HGNC	ENSG00000126246				27	0	0	23	4	14.8148
ARHGAP33	0	genome.wustl.edu	37	19	36279053	36279053	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	36279053	36279053	C	A	SNP	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	missense	c.3586	p.R1196S	0.665	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777				80	0	0	79	21	21
ALKBH6	0	genome.wustl.edu	37	19	36505089	36505089	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	36505089	36505089	T	C	SNP	ALKBH6	ENST00000378875	human	ensembl	74_37	-1	known	missense	c.47	p.D16G	0.436	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH6	HGNC	ENSG00000239382				75	0	0	88	6	6.38298
CLIP3	0	genome.wustl.edu	37	19	36510166	36510166	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	36510166	36510166	C	T	SNP	CLIP3	ENST00000360535	human	ensembl	74_37	-1	known	missense	c.961	p.G321S	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP3	HGNC	ENSG00000105270				44	0	0	39	14	26.4151
GGN	0	genome.wustl.edu	37	19	38877092	38877092	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	38877092	38877092	G	A	SNP	GGN	ENST00000334928	human	ensembl	74_37	-1	known	silent	c.810	p.G270	0.648	NULL	NULL	-	no_errors	GGN	HGNC	ENSG00000179168				45	0	0	48	14	22.5806
GGN	0	genome.wustl.edu	37	19	38877558	38877558	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	38877558	38877558	G	A	SNP	GGN	ENST00000334928	human	ensembl	74_37	-1	known	missense	c.344	p.A115V	0.274	NULL	NULL	-	no_errors	GGN	HGNC	ENSG00000179168				8	0	0	11	5	31.25
RYR1	0	genome.wustl.edu	37	19	38949887	38949887	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	38949887	38949887	C	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.2269	p.R757S	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				37	0	0	47	13	21.6667
RYR1	0	genome.wustl.edu	37	19	38990283	38990283	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	38990283	38990283	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.7036	p.V2346M	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				46	0	0	32	8	20
IFNL2	0	genome.wustl.edu	37	19	39759369	39759369	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	39759369	39759369	C	T	SNP	IFNL2	ENST00000331982	human	ensembl	74_37	+1	known	silent	c.63	p.T21	0.001	NULL	NULL	-	no_errors	IFNL2	HGNC	ENSG00000183709				75	0	0	55	6	9.83607
ZNF780A	0	genome.wustl.edu	37	19	40581804	40581804	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	40581804	40581804	T	C	SNP	ZNF780A	ENST00000455521	human	ensembl	74_37	-1	known	missense	c.548	p.Q183R	0.065	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782				63	0	0	46	5	9.80392
AKT2	0	genome.wustl.edu	37	19	40741932	40741932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	40741932	40741932	C	T	SNP	AKT2	ENST00000392038	human	ensembl	74_37	-1	known	missense	c.1040	p.R347H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom	-	no_errors	AKT2	HGNC	ENSG00000105221				79	0	0	74	13	14.9425
SPTBN4	0	genome.wustl.edu	37	19	41071344	41071344	+	Silent	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	41071344	41071344	G	T	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	silent	c.5931	p.V1977	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				83	0	0	81	7	7.95455
SNRPA	0	genome.wustl.edu	37	19	41265514	41265514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	41265514	41265514	C	T	SNP	SNRPA	ENST00000243563	human	ensembl	74_37	+1	known	missense	c.425	p.P142L	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRPA	HGNC	ENSG00000077312				22	0	0	34	16	32
CYP2A13	0	genome.wustl.edu	37	19	41596364	41596364	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	41596364	41596364	C	T	SNP	CYP2A13	ENST00000330436	human	ensembl	74_37	+1	known	silent	c.549	p.S183	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838				128	0	0	130	23	15.0327
AXL	0	genome.wustl.edu	37	19	41726615	41726615	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	41726615	41726615	C	A	SNP	AXL	ENST00000301178	human	ensembl	74_37	+1	known	missense	c.160	p.L54I	0.985	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601				30	0	0	21	7	25
EBI3	0	genome.wustl.edu	37	19	4233238	4233238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	4233238	4233238	A	G	SNP	EBI3	ENST00000221847	human	ensembl	74_37	+1	known	missense	c.313	p.N105D	0.998	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	EBI3	HGNC	ENSG00000105246				59	0	0	71	4	5.33333
ZNF574	0	genome.wustl.edu	37	19	42584303	42584303	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	42584303	42584303	C	T	SNP	ZNF574	ENST00000222339	human	ensembl	74_37	+1	known	silent	c.1815	p.R605	0.990	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732				341	0	0	357	69	16.1972
PRR19	0	genome.wustl.edu	37	19	42814313	42814313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	42814313	42814313	C	T	SNP	PRR19	ENST00000341747	human	ensembl	74_37	+1	known	missense	c.577	p.R193W	0.277	NULL	NULL	-	no_errors	PRR19	HGNC	ENSG00000188368				74	0	0	64	18	21.9512
IRGQ	0	genome.wustl.edu	37	19	44099118	44099118	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	44099118	44099118	C	T	SNP	IRGQ	ENST00000422989	human	ensembl	74_37	-1	known	missense	c.373	p.A125T	0.002	NULL	superfamily_P-loop_NTPase	-	no_errors	IRGQ	HGNC	ENSG00000167378				52	0	0	48	10	17.2414
CHAF1A	0	genome.wustl.edu	37	19	4433428	4433428	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	4433428	4433428	C	T	SNP	CHAF1A	ENST00000301280	human	ensembl	74_37	+1	known	silent	c.2565	p.S855	0.000	NULL	pfam_CAF1A	-	no_errors	CHAF1A	HGNC	ENSG00000167670				62	0	0	107	13	10.8333
ZNF285	0	genome.wustl.edu	37	19	44891368	44891368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	44891368	44891368	C	T	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	missense	c.1039	p.D347N	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508				79	0	0	56	13	18.8406
CLPTM1	0	genome.wustl.edu	37	19	45493811	45493811	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	45493811	45493811	C	A	SNP	CLPTM1	ENST00000337392	human	ensembl	74_37	+1	known	missense	c.1291	p.L431I	1.000	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1	HGNC	ENSG00000104853				130	0	0	124	23	15.6463
SEMA6B	0	genome.wustl.edu	37	19	4550161	4550161	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	4550161	4550161	C	T	SNP	SEMA6B	ENST00000301293	human	ensembl	74_37	-1	known	silent	c.1245	p.A415	0.683	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6B	HGNC	ENSG00000167680				45	0	0	47	7	12.963
NOVA2	0	genome.wustl.edu	37	19	46443245	46443245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	46443245	46443245	G	A	SNP	NOVA2	ENST00000263257	human	ensembl	74_37	-1	known	missense	c.1355	p.T452M	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA2	HGNC	ENSG00000104967				147	0	0	152	33	17.8378
ARHGAP35	0	genome.wustl.edu	37	19	47425372	47425372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	47425372	47425372	G	A	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	missense	c.3440	p.R1147H	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007				55	0	0	44	9	16.9811
ARHGAP35	0	genome.wustl.edu	37	19	47492890	47492890	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	47492890	47492890	C	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	silent	c.3994	p.L1332	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007				150	0	0	150	23	13.2948
ARHGAP35	0	genome.wustl.edu	37	19	47492913	47492913	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	47492913	47492913	C	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	silent	c.4017	p.I1339	0.012	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007				161	0	0	145	33	18.5393
GLTSCR1	0	genome.wustl.edu	37	19	48198197	48198197	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	48198197	48198197	C	G	SNP	GLTSCR1	ENST00000396720	human	ensembl	74_37	+1	known	missense	c.2936	p.A979G	0.014	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169				25	0	0	32	3	8.57143
KCNJ14	0	genome.wustl.edu	37	19	48967762	48967762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	48967762	48967762	C	T	SNP	KCNJ14	ENST00000342291	human	ensembl	74_37	+1	known	missense	c.1039	p.R347C	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ14	HGNC	ENSG00000182324				49	0	0	43	7	14
SNORD35A	0	genome.wustl.edu	37	19	49994454	49994454	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	49994454	49994454	C	T	SNP	SNORD35A	ENST00000363389	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD35A	HGNC	ENSG00000200259				130	1	0.763359	114	19	14.2857
EMC10	0	genome.wustl.edu	37	19	50985148	50985148	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	50985148	50985148	C	T	SNP	EMC10	ENST00000376918	human	ensembl	74_37	+1	known	missense	c.709	p.L237F	1.000	NULL	NULL	-	no_errors	EMC10	HGNC	ENSG00000161671				18	0	0	14	5	26.3158
EMC10	0	genome.wustl.edu	37	19	50985202	50985202	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	50985202	50985202	T	C	SNP	EMC10	ENST00000376918	human	ensembl	74_37	+1	known	nonstop	c.763	p.*255R	1.000	NULL	NULL	-	no_errors	EMC10	HGNC	ENSG00000161671				20	0	0	21	9	30
SIGLEC8	0	genome.wustl.edu	37	19	51955752	51955752	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	51955752	51955752	G	A	SNP	SIGLEC8	ENST00000321424	human	ensembl	74_37	-1	known	nonsense	c.1381	p.Q461*	0.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC8	HGNC	ENSG00000105366				99	0	0	73	22	23.1579
ZNF534	0	genome.wustl.edu	37	19	52941489	52941489	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	52941489	52941489	A	G	SNP	ZNF534	ENST00000332323	human	ensembl	74_37	+1	known	missense	c.815	p.Q272R	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF534	HGNC	ENSG00000198633				48	0	0	22	5	18.5185
ZNF765	0	genome.wustl.edu	37	19	53911570	53911570	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	53911570	53911570	G	A	SNP	ZNF765	ENST00000396408	human	ensembl	74_37	+1	known	silent	c.762	p.S254	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF765	HGNC	ENSG00000196417				85	0	0	68	6	8.10811
CACNG8	0	genome.wustl.edu	37	19	54483177	54483177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	54483177	54483177	G	A	SNP	CACNG8	ENST00000270458	human	ensembl	74_37	+1	known	missense	c.424	p.G142R	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g8su,prints_Claudin	-	no_errors	CACNG8	HGNC	ENSG00000142408				30	0	0	30	6	16.6667
OSCAR	0	genome.wustl.edu	37	19	54600440	54600440	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	54600440	54600440	A	G	SNP	OSCAR	ENST00000356532	human	ensembl	74_37	-1	known	missense	c.94	p.S32P	0.792	NULL	smart_Ig_sub	-	no_errors	OSCAR	HGNC	ENSG00000170909				79	0	0	60	16	21.0526
LILRB5	0	genome.wustl.edu	37	19	54760025	54760025	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	54760025	54760025	A	G	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	missense	c.509	p.L170P	0.737	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				71	0	0	80	13	13.9785
BRSK1	0	genome.wustl.edu	37	19	55814186	55814186	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	55814186	55814186	G	T	SNP	BRSK1	ENST00000590333	human	ensembl	74_37	+1	known	missense	c.1027	p.G343C	1.000	pfscan_UBA/transl_elong_EF1B_N_euk	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	BRSK1	HGNC	ENSG00000160469				77	0	0	75	14	15.7303
ZNF587	0	genome.wustl.edu	37	19	58367595	58367595	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	58367595	58367595	T	A	SNP	ZNF587	ENST00000339656	human	ensembl	74_37	+1	known	missense	c.157	p.S53T	0.276	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466				90	0	0	52	19	26.7606
ZNF606	0	genome.wustl.edu	37	19	58491210	58491210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	58491210	58491210	C	T	SNP	ZNF606	ENST00000341164	human	ensembl	74_37	-1	known	missense	c.838	p.A280T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704				100	0	0	56	8	12.5
ZSCAN18	0	genome.wustl.edu	37	19	58596660	58596660	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	58596660	58596660	G	T	SNP	ZSCAN18	ENST00000600404	human	ensembl	74_37	-1	known	missense	c.1093	p.P365T	0.002	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN18	HGNC	ENSG00000121413				26	0	0	39	5	11.3636
ZBTB45	0	genome.wustl.edu	37	19	59027859	59027859	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	59027859	59027859	G	A	SNP	ZBTB45	ENST00000354590	human	ensembl	74_37	-1	known	silent	c.1182	p.R394	0.008	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB45	HGNC	ENSG00000119574				31	0	0	22	9	29.0323
POLRMT	0	genome.wustl.edu	37	19	618551	618551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	618551	618551	G	A	SNP	POLRMT	ENST00000588649	human	ensembl	74_37	-1	known	missense	c.3359	p.P1120L	0.995	pfam_DNA-dir_Rpol_phage-type	pfam_DNA-dir_Rpol_phage-type	-	no_errors	POLRMT	HGNC	ENSG00000099821				30	0	0	36	10	21.7391
ARHGEF18	0	genome.wustl.edu	37	19	7528734	7528734	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	7528734	7528734	A	G	SNP	ARHGEF18	ENST00000359920	human	ensembl	74_37	+1	known	missense	c.2102	p.Q701R	0.063	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF18	HGNC	ENSG00000104880				15	0	0	11	10	47.619
FBN3	0	genome.wustl.edu	37	19	8161800	8161800	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	8161800	8161800	C	T	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.5378	p.R1793Q	0.068	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				104	0	0	92	16	14.8148
FBN3	0	genome.wustl.edu	37	19	8176580	8176580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	8176580	8176580	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.4036	p.R1346C	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				55	0	0	53	10	15.873
ANAPC1	0	genome.wustl.edu	37	2	112578910	112578910	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	112578910	112578910	G	A	SNP	ANAPC1	ENST00000341068	human	ensembl	74_37	-1	known	nonsense	c.3112	p.R1038*	1.000	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107				17	0	0	9	3	25
PQLC3	0	genome.wustl.edu	37	2	11312071	11312071	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	11312071	11312071	C	T	SNP	PQLC3	ENST00000295083	human	ensembl	74_37	+1	known	silent	c.375	p.S125	0.599	pirsf_MannP-dilichol_defect-1	pirsf_MannP-dilichol_defect-1	-	no_errors	PQLC3	HGNC	ENSG00000162976				96	0	0	70	16	18.6047
SLC35F5	0	genome.wustl.edu	37	2	114500441	114500441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	114500441	114500441	C	T	SNP	SLC35F5	ENST00000245680	human	ensembl	74_37	-1	known	missense	c.578	p.R193H	1.000	NULL	pfam_DMT	-	no_errors	SLC35F5	HGNC	ENSG00000115084				66	0	0	49	14	22.2222
TFCP2L1	0	genome.wustl.edu	37	2	122000030	122000030	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	122000030	122000030	G	A	SNP	TFCP2L1	ENST00000263707	human	ensembl	74_37	-1	known	missense	c.673	p.R225W	1.000	pfam_CP2	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2L1	HGNC	ENSG00000115112				140	0	0	140	23	14.1104
TUBA3E	0	genome.wustl.edu	37	2	130949655	130949655	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	130949655	130949655	G	A	SNP	TUBA3E	ENST00000312988	human	ensembl	74_37	-1	known	silent	c.1102	p.L368	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086				86	0	0	60	17	22.0779
POTEJ	0	genome.wustl.edu	37	2	131414158	131414158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	131414158	131414158	C	T	SNP	POTEJ	ENST00000409602	human	ensembl	74_37	+1	novel	missense	c.1825	p.H609Y	0.011	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEJ	HGNC	ENSG00000222038				45	0	0	40	5	11.1111
CACNB4	0	genome.wustl.edu	37	2	152695680	152695680	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	152695680	152695680	G	A	SNP	CACNB4	ENST00000539935	human	ensembl	74_37	-1	known	nonsense	c.1516	p.R506*	1.000	NULL	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu	-	no_errors	CACNB4	HGNC	ENSG00000182389				41	0	0	21	8	27.5862
BAZ2B	0	genome.wustl.edu	37	2	160242867	160242867	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	160242867	160242867	G	A	SNP	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	silent	c.3468	p.Y1156	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636				59	0	0	40	9	18.3673
RBMS1	0	genome.wustl.edu	37	2	161159865	161159865	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	161159865	161159865	G	A	SNP	RBMS1	ENST00000392753	human	ensembl	74_37	-1	known	missense	c.536	p.T179I	0.997	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS1	HGNC	ENSG00000153250				80	0	0	60	17	22.0779
FAP	0	genome.wustl.edu	37	2	163074649	163074649	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	163074649	163074649	C	A	SNP	FAP	ENST00000188790	human	ensembl	74_37	-1	known	missense	c.609	p.E203D	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098				47	0	0	44	10	18.5185
CSRNP3	0	genome.wustl.edu	37	2	166536162	166536162	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	166536162	166536162	A	G	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	missense	c.1657	p.I553V	0.929	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				127	0	0	96	24	20
HOXD11	0	genome.wustl.edu	37	2	176972292	176972292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	176972292	176972292	G	A	SNP	HOXD11	ENST00000249504	human	ensembl	74_37	+1	known	missense	c.209	p.R70H	1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD11	HGNC	ENSG00000128713				19	0	0	36	6	14.2857
TTN	0	genome.wustl.edu	37	2	179425103	179425103	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	179425103	179425103	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.78052	p.I26018V	0.511	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				44	0	0	35	7	16.6667
TTN	0	genome.wustl.edu	37	2	179469726	179469726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	179469726	179469726	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.46474	p.V15492I	0.998	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				184	0	0	125	20	13.7931
TTN	0	genome.wustl.edu	37	2	179518602	179518602	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	179518602	179518602	G	A	SNP	TTN	ENST00000589042	human	ensembl	74_37	-1	putative	silent	c.38487	p.A12829	0.001	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				55	0	0	48	6	11.1111
TTN	0	genome.wustl.edu	37	2	179542916	179542916	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	179542916	179542916	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.30198	p.K10066N	0.552	pfam_PPAK_motif,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				96	0	0	61	14	18.6667
TTN	0	genome.wustl.edu	37	2	179577126	179577126	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	179577126	179577126	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.23791	p.T7931A	0.140	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				139	0	0	113	16	12.4031
MFSD6	0	genome.wustl.edu	37	2	191300954	191300954	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	191300954	191300954	G	A	SNP	MFSD6	ENST00000281416	human	ensembl	74_37	+1	known	missense	c.199	p.D67N	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6	HGNC	ENSG00000151690				87	0	0	73	14	16.092
COQ10B	0	genome.wustl.edu	37	2	198327368	198327368	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	198327368	198327368	T	G	SNP	COQ10B	ENST00000263960	human	ensembl	74_37	+1	known	nonsense	c.360	p.Y120*	0.998	pfam_Polyket_cyc	pfam_Polyket_cyc	-	no_errors	COQ10B	HGNC	ENSG00000115520				62	0	0	39	5	11.3636
C2orf69	0	genome.wustl.edu	37	2	200789976	200789976	+	Silent	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	200789976	200789976	A	C	SNP	C2orf69	ENST00000319974	human	ensembl	74_37	+1	known	silent	c.525	p.P175	0.998	pfam_UPF0565	pfam_UPF0565	-	no_errors	C2orf69	HGNC	ENSG00000178074				87	0	0	60	19	24.0506
CYP27A1	0	genome.wustl.edu	37	2	219677014	219677014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	219677014	219677014	G	A	SNP	CYP27A1	ENST00000445971	human	ensembl	74_37	+1	known	missense	c.325	p.A109T	0.000	NULL	NULL	-	no_errors	CYP27A1	HGNC	ENSG00000135929				148	0	0	139	25	15.2439
OBSL1	0	genome.wustl.edu	37	2	220421238	220421238	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	220421238	220421238	T	C	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.4274	p.D1425G	0.984	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				163	0	0	128	31	19.4969
SLC4A3	0	genome.wustl.edu	37	2	220502442	220502442	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	220502442	220502442	C	T	SNP	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	missense	c.2756	p.T919M	1.000	pfam_HCO3_transpt_C,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				73	0	0	73	18	19.7802
AGAP1	0	genome.wustl.edu	37	2	236949398	236949398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	236949398	236949398	C	T	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.1804	p.R602W	1.000	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				46	0	0	48	9	15.7895
KIF1A	0	genome.wustl.edu	37	2	241706365	241706365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	241706365	241706365	C	T	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	missense	c.1651	p.V551I	0.992	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				21	0	0	21	8	27.5862
HDLBP	0	genome.wustl.edu	37	2	242181952	242181952	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	242181952	242181952	C	T	SNP	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	missense	c.2092	p.D698N	0.640	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				47	0	0	47	7	12.963
OTOF	0	genome.wustl.edu	37	2	26684616	26684616	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	26684616	26684616	C	T	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	silent	c.5481	p.R1827	0.998	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155				129	0	0	129	25	16.2338
DPYSL5	0	genome.wustl.edu	37	2	27157457	27157457	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	27157457	27157457	C	T	SNP	DPYSL5	ENST00000288699	human	ensembl	74_37	+1	known	silent	c.802	p.L268	1.000	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851				175	0	0	148	34	18.6813
C2orf16	0	genome.wustl.edu	37	2	27804551	27804551	+	Silent	SNP	T	T	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	27804551	27804551	T	A	SNP	C2orf16	ENST00000408964	human	ensembl	74_37	+1	known	silent	c.5112	p.G1704	0.000	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843				317	0	0	263	62	19.0769
LTBP1	0	genome.wustl.edu	37	2	33567940	33567940	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	33567940	33567940	A	C	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	missense	c.3769	p.S1257R	0.996	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				76	0	0	56	9	13.8462
LTBP1	0	genome.wustl.edu	37	2	33588554	33588554	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	33588554	33588554	G	A	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	silent	c.4371	p.T1457	0.992	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				98	0	0	59	16	21.3333
LHCGR	0	genome.wustl.edu	37	2	48874192	48874192	+	RNA	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	48874192	48874192	G	A	SNP	LHCGR	ENST00000420913	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LHCGR	HGNC	ENSG00000138039				25	0	0	19	7	26.9231
TSPYL6	0	genome.wustl.edu	37	2	54482990	54482990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	54482990	54482990	G	A	SNP	TSPYL6	ENST00000317802	human	ensembl	74_37	-1	known	missense	c.299	p.A100V	0.006	NULL	pfam_NAP_family	-	no_errors	TSPYL6	HGNC	ENSG00000178021				74	0	0	68	24	26.087
MEIS1	0	genome.wustl.edu	37	2	66798629	66798629	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	66798629	66798629	A	G	SNP	MEIS1	ENST00000407092	human	ensembl	74_37	+1	known	missense	c.1366	p.S456G	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS1	HGNC	ENSG00000143995				10	0	0	6	5	45.4545
PCYOX1	0	genome.wustl.edu	37	2	70502099	70502099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	70502099	70502099	G	A	SNP	PCYOX1	ENST00000433351	human	ensembl	74_37	+1	known	missense	c.503	p.R168H	1.000	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1	HGNC	ENSG00000116005				81	0	0	57	4	6.55738
ADD2	0	genome.wustl.edu	37	2	70903863	70903863	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	70903863	70903863	C	A	SNP	ADD2	ENST00000430656	human	ensembl	74_37	-1	known	missense	c.1706	p.G569V	0.067	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340				16	0	0	19	6	24
MPHOSPH10	0	genome.wustl.edu	37	2	71361861	71361861	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	71361861	71361861	A	G	SNP	MPHOSPH10	ENST00000244230	human	ensembl	74_37	+1	known	silent	c.1032	p.T344	0.000	pfam_Mpp10,pirsf_snoRNP_Mpp10	pfam_Mpp10,pirsf_snoRNP_Mpp10	-	no_errors	MPHOSPH10	HGNC	ENSG00000124383				104	0	0	60	15	20
DYSF	0	genome.wustl.edu	37	2	71795404	71795404	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	71795404	71795404	G	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.2839	p.D947Y	1.000	smart_Peroxin/Ferlin	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				446	0	0	434	70	13.8889
DYSF	0	genome.wustl.edu	37	2	71909668	71909668	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	71909668	71909668	A	G	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.6158	p.D2053G	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				120	0	0	129	15	10.4167
TET3	0	genome.wustl.edu	37	2	74273836	74273836	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	74273836	74273836	G	A	SNP	TET3	ENST00000409262	human	ensembl	74_37	+1	known	silent	c.387	p.R129	0.868	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605				100	1	0.990099	91	14	13.3333
INO80B	0	genome.wustl.edu	37	2	74683363	74683363	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	74683363	74683363	G	T	SNP	INO80B	ENST00000452361	human	ensembl	74_37	+1	known	missense	c.504	p.K168N	1.000	NULL	pfam_INO80B_C,pfam_Znf_HIT	-	no_errors	INO80B	HGNC	ENSG00000115274				93	0	0	57	15	20.8333
LOXL3	0	genome.wustl.edu	37	2	74761728	74761728	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	74761728	74761728	G	T	SNP	LOXL3	ENST00000264094	human	ensembl	74_37	-1	known	missense	c.1753	p.H585N	1.000	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL3	HGNC	ENSG00000115318				63	0	0	41	6	12.766
ANKRD20A8P	0	genome.wustl.edu	37	2	95494773	95494773	+	RNA	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	95494773	95494773	C	A	SNP	ANKRD20A8P	ENST00000432432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ANKRD20A8P	HGNC	ENSG00000229089				122	0	0	71	13	15.4762
ZAP70	0	genome.wustl.edu	37	2	98340609	98340609	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	98340609	98340609	G	A	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	missense	c.110	p.R37H	1.000	pfam_SH2,smart_SH2,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				12	0	0	15	3	16.6667
KIF16B	0	genome.wustl.edu	37	20	16359990	16359990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	16359990	16359990	G	A	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	missense	c.2657	p.T886M	0.003	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				127	0	0	85	16	15.8416
NKX2-2	0	genome.wustl.edu	37	20	21492693	21492693	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	21492693	21492693	C	T	SNP	NKX2-2	ENST00000377142	human	ensembl	74_37	-1	known	silent	c.690	p.A230	0.916	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-2	HGNC	ENSG00000125820				50	0	0	56	12	17.6471
SSTR4	0	genome.wustl.edu	37	20	23016705	23016705	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	23016705	23016705	C	T	SNP	SSTR4	ENST00000255008	human	ensembl	74_37	+1	known	silent	c.585	p.A195	0.236	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_4,prints_Somatstn_rcpt_1	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_4,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671				70	0	0	112	16	12.5
HCK	0	genome.wustl.edu	37	20	30672331	30672331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	30672331	30672331	G	A	SNP	HCK	ENST00000375852	human	ensembl	74_37	+1	known	missense	c.820	p.G274R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	HCK	HGNC	ENSG00000101336				63	0	0	58	8	12.1212
ASXL1	0	genome.wustl.edu	37	20	30956840	30956840	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	30956840	30956840	C	A	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	missense	c.166	p.L56I	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				69	0	0	63	9	12.5
ASXL1	0	genome.wustl.edu	37	20	31022318	31022318	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	31022318	31022318	G	A	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	silent	c.1803	p.T601	0.952	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				70	0	0	60	14	18.9189
LZTS3	0	genome.wustl.edu	37	20	3145154	3145154	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	3145154	3145154	C	T	SNP	LZTS3	ENST00000329152	human	ensembl	74_37	-1	known	silent	c.1968	p.E656	1.000	NULL	NULL	-	no_errors	LZTS3	Uniprot_gn	ENSG00000088899				81	0	0	89	20	18.3486
BPIFB6	0	genome.wustl.edu	37	20	31619462	31619462	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	31619462	31619462	G	A	SNP	BPIFB6	ENST00000349552	human	ensembl	74_37	+1	known	silent	c.9	p.R3	0.758	NULL	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB6	HGNC	ENSG00000167104				27	0	0	22	5	18.5185
BPIFA3	0	genome.wustl.edu	37	20	31813012	31813012	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	31813012	31813012	C	T	SNP	BPIFA3	ENST00000375454	human	ensembl	74_37	+1	known	silent	c.495	p.C165	0.057	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	-	no_errors	BPIFA3	HGNC	ENSG00000131059				106	0	0	100	20	16.6667
ITPA	0	genome.wustl.edu	37	20	3204042	3204042	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	3204042	3204042	C	T	SNP	ITPA	ENST00000380113	human	ensembl	74_37	+1	known	silent	c.519	p.N173	0.001	pfam_Ham1p-like,tigrfam_Ham1p-like	pfam_Ham1p-like,tigrfam_Ham1p-like	-	no_errors	ITPA	HGNC	ENSG00000125877				45	0	0	42	9	17.6471
NCOA6	0	genome.wustl.edu	37	20	33330813	33330813	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	33330813	33330813	G	A	SNP	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	nonsense	c.3247	p.Q1083*	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				115	0	0	127	20	13.6054
NCOA6	0	genome.wustl.edu	37	20	33331122	33331122	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	33331122	33331122	G	A	SNP	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	nonsense	c.2938	p.Q980*	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				86	0	0	79	16	16.8421
NCOA6	0	genome.wustl.edu	37	20	33345720	33345720	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	33345720	33345720	T	C	SNP	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	silent	c.831	p.Q277	0.932	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				36	0	0	57	6	9.52381
GGT7	0	genome.wustl.edu	37	20	33442648	33442648	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	33442648	33442648	T	C	SNP	GGT7	ENST00000336431	human	ensembl	74_37	-1	novel	missense	c.1181	p.N394S	1.000	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT7	HGNC	ENSG00000131067				38	0	0	68	5	6.84932
C20orf194	0	genome.wustl.edu	37	20	3362033	3362033	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	3362033	3362033	T	C	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	silent	c.276	p.V92	1.000	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				42	0	0	45	5	10
ERGIC3	0	genome.wustl.edu	37	20	34143892	34143892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	34143892	34143892	C	T	SNP	ERGIC3	ENST00000447986	human	ensembl	74_37	+1	known	missense	c.851	p.A284V	1.000	pfam_Erv_C	pfam_Erv_C	-	no_errors	ERGIC3	HGNC	ENSG00000125991				175	1	0.568182	175	30	14.6341
RBM39	0	genome.wustl.edu	37	20	34313012	34313012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	34313012	34313012	G	A	SNP	RBM39	ENST00000253363	human	ensembl	74_37	-1	known	missense	c.482	p.A161V	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM39	HGNC	ENSG00000131051				106	0	0	87	12	12.1212
SNX21	0	genome.wustl.edu	37	20	44470412	44470412	+	RNA	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	44470412	44470412	T	C	SNP	SNX21	ENST00000344780	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNX21	HGNC	ENSG00000124104				10	0	0	9	2	18.1818
SNORD12C	0	genome.wustl.edu	37	20	47895511	47895511	+	RNA	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	47895511	47895511	T	C	SNP	SNORD12C	ENST00000386307	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD12C	HGNC	ENSG00000209042				49	0	0	37	12	24.4898
KCNB1	0	genome.wustl.edu	37	20	47991220	47991220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	47991220	47991220	G	A	SNP	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	missense	c.877	p.R293C	1.000	pfam_Ion_trans_dom	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445				76	0	0	78	17	17.8947
ZNF217	0	genome.wustl.edu	37	20	52192367	52192367	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	52192367	52192367	T	A	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	missense	c.2936	p.D979V	0.123	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				63	0	0	61	12	16.4384
DOK5	0	genome.wustl.edu	37	20	53205319	53205319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	53205319	53205319	C	T	SNP	DOK5	ENST00000262593	human	ensembl	74_37	+1	known	missense	c.383	p.A128V	1.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK5	HGNC	ENSG00000101134				72	0	0	49	11	18.3333
GMEB2	0	genome.wustl.edu	37	20	62221599	62221599	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	62221599	62221599	G	A	SNP	GMEB2	ENST00000266068	human	ensembl	74_37	-1	known	missense	c.1436	p.T479M	0.998	NULL	pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Sig_transdc_His_kin_Hpt_dom,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB2	HGNC	ENSG00000101216				41	0	0	60	9	13.0435
ZGPAT	0	genome.wustl.edu	37	20	62364695	62364695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	62364695	62364695	C	T	SNP	ZGPAT	ENST00000328969	human	ensembl	74_37	+1	known	missense	c.709	p.R237C	0.881	NULL	pfam_G_patch_dom,smart_Znf_CCCH,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	ZGPAT	HGNC	ENSG00000197114				33	0	0	31	6	16.2162
KRTAP11-1	0	genome.wustl.edu	37	21	32253379	32253379	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	32253379	32253379	G	A	SNP	KRTAP11-1	ENST00000332378	human	ensembl	74_37	-1	known	silent	c.465	p.C155	0.012	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP11-1	HGNC	ENSG00000182591				91	0	0	108	21	16.2791
TIAM1	0	genome.wustl.edu	37	21	32617947	32617947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	32617947	32617947	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.1441	p.G481S	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				38	0	0	30	6	16.6667
GART	0	genome.wustl.edu	37	21	34882226	34882226	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	34882226	34882226	A	G	SNP	GART	ENST00000381815	human	ensembl	74_37	-1	known	silent	c.2316	p.G772	1.000	pfam_AIR_synth_C_dom,superfamily_AIR_synth_C_dom	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C_dom,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth_N_dom,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131				38	0	0	22	11	33.3333
GART	0	genome.wustl.edu	37	21	34903066	34903066	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	34903066	34903066	T	C	SNP	GART	ENST00000381815	human	ensembl	74_37	-1	known	missense	c.722	p.Q241R	1.000	pfam_PRibGlycinamid_synth_ATP-grasp,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C_dom,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth_N_dom,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131				58	0	0	48	10	17.2414
TTC3	0	genome.wustl.edu	37	21	38522411	38522411	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	38522411	38522411	T	C	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	missense	c.2152	p.C718R	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				43	0	0	31	8	20.5128
UMODL1	0	genome.wustl.edu	37	21	43531464	43531464	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	43531464	43531464	A	C	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	missense	c.2132	p.E711A	0.000	NULL	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				30	0	0	34	5	12.8205
POFUT2	0	genome.wustl.edu	37	21	46689763	46689763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	46689763	46689763	C	T	SNP	POFUT2	ENST00000349485	human	ensembl	74_37	-1	known	missense	c.1003	p.V335I	0.513	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866				51	0	0	57	9	13.6364
COL6A1	0	genome.wustl.edu	37	21	47401807	47401807	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	47401807	47401807	T	C	SNP	COL6A1	ENST00000361866	human	ensembl	74_37	+1	known	missense	c.43	p.C15R	1.000	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156				21	0	0	12	9	42.8571
COL6A2	0	genome.wustl.edu	37	21	47552160	47552160	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	47552160	47552160	C	T	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	silent	c.2754	p.G918	0.082	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				18	0	0	28	5	15.1515
PCNT	0	genome.wustl.edu	37	21	47841889	47841889	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	47841889	47841889	G	A	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.7030	p.G2344S	0.023	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				88	0	0	76	13	14.6067
CCT8L2	0	genome.wustl.edu	37	22	17072813	17072813	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	17072813	17072813	C	T	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	missense	c.628	p.G210R	0.004	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				109	0	0	99	16	13.913
SLC25A18	0	genome.wustl.edu	37	22	18072980	18072980	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	18072980	18072980	G	A	SNP	SLC25A18	ENST00000327451	human	ensembl	74_37	+1	known	missense	c.926	p.R309H	0.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A18	HGNC	ENSG00000182902				143	0	0	121	28	18.7919
DGCR14	0	genome.wustl.edu	37	22	19130370	19130370	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	19130370	19130370	T	G	SNP	DGCR14	ENST00000252137	human	ensembl	74_37	-1	known	missense	c.173	p.D58A	1.000	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056				161	0	0	140	24	14.6341
CLDN5	0	genome.wustl.edu	37	22	19511290	19511290	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	19511290	19511290	C	T	SNP	CLDN5	ENST00000403084	human	ensembl	74_37	-1	known	silent	c.744	p.A248	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin5	-	no_errors	CLDN5	HGNC	ENSG00000184113				12	0	0	20	5	20
TBX1	0	genome.wustl.edu	37	22	19748693	19748693	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	19748693	19748693	G	A	SNP	TBX1	ENST00000329705	human	ensembl	74_37	+1	known	silent	c.300	p.P100	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX1	HGNC	ENSG00000184058				14	0	0	21	6	22.2222
COMT	0	genome.wustl.edu	37	22	19951207	19951207	+	Silent	SNP	C	C	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	19951207	19951207	C	G	SNP	COMT	ENST00000361682	human	ensembl	74_37	+1	known	silent	c.408	p.L136	0.490	pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk	pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk	-	no_errors	COMT	HGNC	ENSG00000093010				51	0	0	36	5	12.1951
ARVCF	0	genome.wustl.edu	37	22	19961272	19961272	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	19961272	19961272	C	T	SNP	ARVCF	ENST00000263207	human	ensembl	74_37	-1	known	silent	c.2133	p.L711	0.996	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889				111	0	0	114	35	23.4899
RTN4R	0	genome.wustl.edu	37	22	20230301	20230301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	20230301	20230301	G	A	SNP	RTN4R	ENST00000043402	human	ensembl	74_37	-1	known	missense	c.355	p.R119W	0.159	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4R	HGNC	ENSG00000040608				44	0	0	39	16	29.0909
PPM1F	0	genome.wustl.edu	37	22	22279923	22279923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	22279923	22279923	C	T	SNP	PPM1F	ENST00000397495	human	ensembl	74_37	-1	novel	missense	c.1004	p.R335Q	0.000	smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1F	HGNC	ENSG00000100034				26	0	0	24	6	20
GNAZ	0	genome.wustl.edu	37	22	23438138	23438138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	23438138	23438138	C	T	SNP	GNAZ	ENST00000248996	human	ensembl	74_37	+1	known	missense	c.256	p.R86W	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_I	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266				245	0	0	232	46	16.5468
CABIN1	0	genome.wustl.edu	37	22	24572175	24572175	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	24572175	24572175	C	T	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	missense	c.6137	p.P2046L	0.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				17	0	0	15	3	16.6667
CABIN1	0	genome.wustl.edu	37	22	24574128	24574128	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	24574128	24574128	C	T	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	silent	c.6627	p.S2209	0.577	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				62	0	0	63	11	14.8649
GGT1	0	genome.wustl.edu	37	22	25024064	25024064	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	25024064	25024064	G	A	SNP	GGT1	ENST00000248923	human	ensembl	74_37	+1	known	silent	c.1353	p.S451	0.043	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031				105	0	0	112	22	16.4179
CRYBB3	0	genome.wustl.edu	37	22	25601264	25601264	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	25601264	25601264	C	T	SNP	CRYBB3	ENST00000215855	human	ensembl	74_37	+1	known	silent	c.405	p.D135	0.965	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB3	HGNC	ENSG00000100053				39	0	0	31	12	27.907
HPS4	0	genome.wustl.edu	37	22	26860585	26860585	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	26860585	26860585	C	T	SNP	HPS4	ENST00000398141	human	ensembl	74_37	-1	known	silent	c.1050	p.R350	0.001	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099				86	0	0	84	16	16
MN1	0	genome.wustl.edu	37	22	28193443	28193443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	28193443	28193443	C	T	SNP	MN1	ENST00000302326	human	ensembl	74_37	-1	known	missense	c.3089	p.G1030D	1.000	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184				86	0	0	117	19	13.9706
RHBDD3	0	genome.wustl.edu	37	22	29656437	29656437	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	29656437	29656437	C	T	SNP	RHBDD3	ENST00000216085	human	ensembl	74_37	-1	known	silent	c.861	p.P287	0.000	NULL	pfam_Peptidase_S54_rhomboid_dom,superfamily_UBA-like	-	no_errors	RHBDD3	HGNC	ENSG00000100263				15	0	0	24	6	20
NEFH	0	genome.wustl.edu	37	22	29879422	29879422	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	29879422	29879422	G	A	SNP	NEFH	ENST00000310624	human	ensembl	74_37	+1	known	silent	c.942	p.A314	0.118	pfam_IF	pfam_IF,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285				195	0	0	166	34	17
OSBP2	0	genome.wustl.edu	37	22	31091509	31091509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	31091509	31091509	G	A	SNP	OSBP2	ENST00000332585	human	ensembl	74_37	+1	known	missense	c.613	p.V205M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,superfamily_DNA-bd_dom_put,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP2	HGNC	ENSG00000184792				124	0	0	114	23	16.7883
LIMK2	0	genome.wustl.edu	37	22	31674530	31674530	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	31674530	31674530	C	T	SNP	LIMK2	ENST00000467301	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.296	-	-	-	no_errors	LIMK2	HGNC	ENSG00000182541				19	0	0	29	5	14.7059
DEPDC5	0	genome.wustl.edu	37	22	32200851	32200851	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	32200851	32200851	T	C	SNP	DEPDC5	ENST00000266091	human	ensembl	74_37	+1	known	silent	c.1167	p.R389	0.060	NULL	pfam_IML1,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150				166	0	0	153	32	17.2973
MYH9	0	genome.wustl.edu	37	22	36714278	36714278	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	36714278	36714278	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.1201	p.V401I	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				181	0	0	145	26	15.2047
IL2RB	0	genome.wustl.edu	37	22	37524763	37524763	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	37524763	37524763	C	T	SNP	IL2RB	ENST00000216223	human	ensembl	74_37	-1	known	silent	c.1029	p.V343	0.000	NULL	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RB	HGNC	ENSG00000100385				55	0	0	51	5	8.92857
GGA1	0	genome.wustl.edu	37	22	38016860	38016860	+	Silent	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	38016860	38016860	C	A	SNP	GGA1	ENST00000343632	human	ensembl	74_37	+1	known	silent	c.468	p.T156	0.109	NULL	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA1	HGNC	ENSG00000100083				123	0	0	97	20	17.094
PLA2G6	0	genome.wustl.edu	37	22	38531068	38531068	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	38531068	38531068	A	G	SNP	PLA2G6	ENST00000332509	human	ensembl	74_37	-1	known	missense	c.821	p.M274T	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Patatin/PLipase_A2-rel,superfamily_Ankyrin_rpt-contain_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PLA2G6	HGNC	ENSG00000184381				52	0	0	43	5	10.4167
CBX6	0	genome.wustl.edu	37	22	39263058	39263058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	39263058	39263058	C	T	SNP	CBX6	ENST00000407418	human	ensembl	74_37	-1	known	missense	c.395	p.R132H	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX6	HGNC	ENSG00000183741				16	0	0	25	11	30.5556
XPNPEP3	0	genome.wustl.edu	37	22	41310311	41310311	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	41310311	41310311	G	A	SNP	XPNPEP3	ENST00000357137	human	ensembl	74_37	+1	known	silent	c.1038	p.T346	0.707	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP3	HGNC	ENSG00000196236				76	0	0	66	11	14.2857
EP300	0	genome.wustl.edu	37	22	41566520	41566520	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	41566520	41566520	G	T	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.4397	p.W1466L	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				72	0	0	61	16	20.7792
POLDIP3	0	genome.wustl.edu	37	22	42998873	42998873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	42998873	42998873	C	T	SNP	POLDIP3	ENST00000252115	human	ensembl	74_37	-1	known	missense	c.353	p.R118Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	POLDIP3	HGNC	ENSG00000100227				150	0	0	124	32	20.5128
SCUBE1	0	genome.wustl.edu	37	22	43617179	43617179	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	43617179	43617179	C	A	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	missense	c.1549	p.D517Y	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				41	0	0	39	8	17.0213
EFCAB6	0	genome.wustl.edu	37	22	43924750	43924750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	43924750	43924750	G	A	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	missense	c.4489	p.R1497W	0.135	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				73	0	0	64	19	22.8916
GTSE1	0	genome.wustl.edu	37	22	46704465	46704465	+	Silent	SNP	T	T	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	46704465	46704465	T	A	SNP	GTSE1	ENST00000454366	human	ensembl	74_37	+1	known	silent	c.387	p.P129	0.000	NULL	NULL	-	no_errors	GTSE1	HGNC	ENSG00000075218				70	0	0	90	16	15.0943
BRD1	0	genome.wustl.edu	37	22	50187724	50187724	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	50187724	50187724	C	T	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	missense	c.2317	p.E773K	0.846	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425				54	0	0	60	11	15.493
PANX2	0	genome.wustl.edu	37	22	50615792	50615792	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	50615792	50615792	C	T	SNP	PANX2	ENST00000395842	human	ensembl	74_37	+1	known	silent	c.651	p.R217	0.307	pfam_Innexin,pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150				16	0	0	21	4	16
PANX2	0	genome.wustl.edu	37	22	50617461	50617461	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	50617461	50617461	G	A	SNP	PANX2	ENST00000395842	human	ensembl	74_37	+1	known	missense	c.1789	p.A597T	0.005	NULL	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150				21	0	0	29	9	23.6842
PLXNB2	0	genome.wustl.edu	37	22	50722652	50722652	+	RNA	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	50722652	50722652	A	C	SNP	PLXNB2	ENST00000496720	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLXNB2	HGNC	ENSG00000196576				55	0	0	82	17	17.1717
SBF1	0	genome.wustl.edu	37	22	50885994	50885994	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	50885994	50885994	G	T	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.5408	p.P1803H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				37	0	0	42	7	14.2857
GPR128	0	genome.wustl.edu	37	3	100413765	100413765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	100413765	100413765	C	T	SNP	GPR128	ENST00000273352	human	ensembl	74_37	+1	known	missense	c.2314	p.R772C	0.008	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR128	HGNC	ENSG00000144820				88	0	0	57	13	18.5714
IMPG2	0	genome.wustl.edu	37	3	101038523	101038523	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	101038523	101038523	C	T	SNP	IMPG2	ENST00000193391	human	ensembl	74_37	-1	known	missense	c.239	p.R80Q	0.074	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG2	HGNC	ENSG00000081148				110	1	0.900901	92	17	15.5963
ZNF80	0	genome.wustl.edu	37	3	113955576	113955576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	113955576	113955576	G	A	SNP	ZNF80	ENST00000308095	human	ensembl	74_37	-1	known	missense	c.346	p.R116C	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF80	HGNC	ENSG00000174255				53	0	0	34	15	30.6122
ZBTB20	0	genome.wustl.edu	37	3	114069871	114069871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	114069871	114069871	C	T	SNP	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	missense	c.1054	p.E352K	0.998	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				67	0	0	77	24	23.7624
POLQ	0	genome.wustl.edu	37	3	121200437	121200437	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	121200437	121200437	G	A	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	nonsense	c.6193	p.Q2065*	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				58	0	0	53	8	13.1148
GOLGB1	0	genome.wustl.edu	37	3	121415133	121415133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	121415133	121415133	C	T	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	missense	c.4222	p.V1408I	0.899	superfamily_Prefoldin	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				133	0	0	97	21	17.7966
MCM2	0	genome.wustl.edu	37	3	127335840	127335840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	127335840	127335840	C	T	SNP	MCM2	ENST00000265056	human	ensembl	74_37	+1	known	missense	c.1652	p.A551V	1.000	pfam_MCM_DNA-dep_ATPase,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_MCM2,pfam_Mg_chelatse_chII,pfam_ATPase_AAA-3,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM2,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM2	HGNC	ENSG00000073111				146	0	0	141	25	15.0602
TMCC1	0	genome.wustl.edu	37	3	129389916	129389916	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	129389916	129389916	G	A	SNP	TMCC1	ENST00000393238	human	ensembl	74_37	-1	known	silent	c.768	p.D256	0.993	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765				196	0	0	179	28	13.5266
A4GNT	0	genome.wustl.edu	37	3	137843319	137843319	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	137843319	137843319	G	A	SNP	A4GNT	ENST00000236709	human	ensembl	74_37	-1	known	silent	c.810	p.R270	0.169	pfam_A1-4-GlycosylTfrase_dom	pfam_A1-4-GlycosylTfrase_dom,pfam_GlycoTrfase_DXD_sugar-bd_CS	-	no_errors	A4GNT	HGNC	ENSG00000118017				82	0	0	57	14	19.7183
ZIC4	0	genome.wustl.edu	37	3	147108882	147108882	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	147108882	147108882	C	T	SNP	ZIC4	ENST00000525172	human	ensembl	74_37	-1	known	silent	c.990	p.S330	0.988	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC4	HGNC	ENSG00000174963				55	0	0	55	17	23.6111
HLTF	0	genome.wustl.edu	37	3	148802525	148802525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	148802525	148802525	C	T	SNP	HLTF	ENST00000310053	human	ensembl	74_37	-1	known	missense	c.172	p.V58I	0.958	NULL	pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HLTF	HGNC	ENSG00000071794				70	0	0	30	13	30.2326
HPS3	0	genome.wustl.edu	37	3	148872966	148872966	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	148872966	148872966	G	A	SNP	HPS3	ENST00000296051	human	ensembl	74_37	+1	known	silent	c.1473	p.V491	1.000	pirsf_HPS3	pirsf_HPS3	-	no_errors	HPS3	HGNC	ENSG00000163755				75	0	0	40	6	13.0435
SIAH2	0	genome.wustl.edu	37	3	150460061	150460061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	150460061	150460061	C	T	SNP	SIAH2	ENST00000312960	human	ensembl	74_37	-1	known	missense	c.842	p.R281H	0.999	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	SIAH2	HGNC	ENSG00000181788				79	0	0	49	17	25.7576
MED12L	0	genome.wustl.edu	37	3	151082765	151082765	+	Splice_Site	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	151082765	151082765	A	C	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	splice_site	c.2853-2	e20-2	1.000	-	-	-	no_errors	MED12L	HGNC	ENSG00000144893				100	0	0	92	18	16.3636
SI	0	genome.wustl.edu	37	3	164716334	164716334	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	164716334	164716334	T	A	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.4534	p.I1512F	0.924	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				83	0	0	78	23	22.7723
SLC7A14	0	genome.wustl.edu	37	3	170185060	170185060	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	170185060	170185060	T	C	SNP	SLC7A14	ENST00000231706	human	ensembl	74_37	-1	known	missense	c.2099	p.D700G	1.000	NULL	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293				54	0	0	46	14	23.3333
SLC7A14	0	genome.wustl.edu	37	3	170201151	170201151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	170201151	170201151	G	A	SNP	SLC7A14	ENST00000231706	human	ensembl	74_37	-1	known	missense	c.1067	p.P356L	1.000	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293				81	0	0	87	16	15.534
USP13	0	genome.wustl.edu	37	3	179459997	179459997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	179459997	179459997	G	A	SNP	USP13	ENST00000263966	human	ensembl	74_37	+1	known	missense	c.1393	p.G465S	1.000	pfam_Peptidase_C19/C67,pirsf_Ubiquitinyl_hydrolase,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP13	HGNC	ENSG00000058056				47	0	0	37	12	24.4898
FXR1	0	genome.wustl.edu	37	3	180666221	180666221	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	180666221	180666221	A	G	SNP	FXR1	ENST00000357559	human	ensembl	74_37	+1	known	silent	c.357	p.K119	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,superfamily_NA-bd_OB-fold,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416				41	0	0	36	9	20
HTR3E	0	genome.wustl.edu	37	3	183822019	183822019	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	183822019	183822019	T	C	SNP	HTR3E	ENST00000335304	human	ensembl	74_37	+1	known	missense	c.374	p.I125T	0.232	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Neur_channel	-	no_errors	HTR3E	HGNC	ENSG00000186038				28	0	0	21	4	16
DVL3	0	genome.wustl.edu	37	3	183883972	183883972	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	183883972	183883972	C	T	SNP	DVL3	ENST00000313143	human	ensembl	74_37	+1	known	silent	c.822	p.G274	0.168	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam,prints_Dishevelled_3	-	no_errors	DVL3	HGNC	ENSG00000161202				103	0	0	74	14	15.9091
EIF4G1	0	genome.wustl.edu	37	3	184035263	184035263	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	184035263	184035263	G	T	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	missense	c.323	p.G108V	0.998	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				84	0	0	75	13	14.7727
EIF4G1	0	genome.wustl.edu	37	3	184040486	184040486	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	184040486	184040486	A	G	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	missense	c.1784	p.Q595R	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				62	0	0	46	9	16.3636
MASP1	0	genome.wustl.edu	37	3	186953630	186953630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	186953630	186953630	G	A	SNP	MASP1	ENST00000296280	human	ensembl	74_37	-1	known	missense	c.2029	p.R677C	0.999	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	MASP1	HGNC	ENSG00000127241				59	0	0	49	11	18.3333
TPRG1	0	genome.wustl.edu	37	3	189038571	189038571	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	189038571	189038571	C	T	SNP	TPRG1	ENST00000345063	human	ensembl	74_37	+1	known	missense	c.790	p.L264F	1.000	NULL	pfam_Inositol_phosphatase	-	no_errors	TPRG1	HGNC	ENSG00000188001				35	0	0	17	5	22.7273
TP63	0	genome.wustl.edu	37	3	189349368	189349368	+	Splice_Site	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	189349368	189349368	T	C	SNP	TP63	ENST00000264731	human	ensembl	74_37	+1	known	splice_site	c.62+2	e1+2	1.000	-	-	-	no_errors	TP63	HGNC	ENSG00000073282				141	1	0.704225	112	16	12.5
MUC4	0	genome.wustl.edu	37	3	195481147	195481147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	195481147	195481147	C	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.15265	p.V5089I	0.009	smart_EG-like_dom	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				87	0	0	107	13	10.8333
LMLN	0	genome.wustl.edu	37	3	197751625	197751625	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	197751625	197751625	T	C	SNP	LMLN	ENST00000330198	human	ensembl	74_37	+1	known	missense	c.1622	p.L541P	1.000	pfam_Peptidase_M8	pfam_Peptidase_M8	-	no_errors	LMLN	HGNC	ENSG00000185621				145	0	0	83	21	20.1923
LINC00691	0	genome.wustl.edu	37	3	24138673	24138673	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	24138673	24138673	C	T	SNP	LINC00691	ENST00000436123	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.143	-	-	-	no_errors	LINC00691	HGNC	ENSG00000224074				34	0	0	23	6	20.6897
OSBPL10	0	genome.wustl.edu	37	3	31705656	31705656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	31705656	31705656	C	T	SNP	OSBPL10	ENST00000396556	human	ensembl	74_37	-1	known	missense	c.2165	p.R722Q	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645				93	0	0	115	21	15.4412
VILL	0	genome.wustl.edu	37	3	38039115	38039115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	38039115	38039115	C	T	SNP	VILL	ENST00000283713	human	ensembl	74_37	+1	known	missense	c.703	p.R235C	0.305	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				54	0	0	58	9	13.4328
ACVR2B	0	genome.wustl.edu	37	3	38524694	38524694	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	38524694	38524694	C	T	SNP	ACVR2B	ENST00000352511	human	ensembl	74_37	+1	known	silent	c.1410	p.S470	0.004	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2B	HGNC	ENSG00000114739				135	0	0	125	32	20.3822
ZNF620	0	genome.wustl.edu	37	3	40557930	40557930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	40557930	40557930	G	A	SNP	ZNF620	ENST00000314529	human	ensembl	74_37	+1	known	missense	c.845	p.C282Y	0.988	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF620	HGNC	ENSG00000177842				80	0	0	69	8	10.3896
SUMF1	0	genome.wustl.edu	37	3	4452611	4452611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	4452611	4452611	C	T	SNP	SUMF1	ENST00000448413	human	ensembl	74_37	-1	known	missense	c.892	p.A298T	0.464	pfam_FGE_dom,superfamily_C-type_lectin_fold	pfam_FGE_dom,superfamily_C-type_lectin_fold	-	no_errors	SUMF1	HGNC	ENSG00000144455				127	0	0	90	24	21.0526
TGM4	0	genome.wustl.edu	37	3	44929185	44929185	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	44929185	44929185	G	A	SNP	TGM4	ENST00000296125	human	ensembl	74_37	+1	known	silent	c.198	p.P66	0.000	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM4	HGNC	ENSG00000163810				51	0	0	44	6	12
CDCP1	0	genome.wustl.edu	37	3	45132792	45132792	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	45132792	45132792	G	A	SNP	CDCP1	ENST00000296129	human	ensembl	74_37	-1	known	silent	c.1866	p.D622	0.963	NULL	superfamily_CUB_dom	-	no_errors	CDCP1	HGNC	ENSG00000163814				92	0	0	96	17	15.0442
CCR9	0	genome.wustl.edu	37	3	45942873	45942873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	45942873	45942873	G	A	SNP	CCR9	ENST00000357632	human	ensembl	74_37	+1	known	missense	c.593	p.C198Y	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR7	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_CCR9,prints_Chemokine_rcpt,prints_Chemokine_CCR7,prints_ATII_rcpt,prints_Chemokine_CCRL1,prints_Chemokine_CXCR4	-	no_errors	CCR9	HGNC	ENSG00000173585				72	0	0	67	9	11.8421
ITPR1	0	genome.wustl.edu	37	3	4683889	4683889	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	4683889	4683889	G	T	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.479	p.W160L	1.000	pfam_Ins145_P3_rcpt,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				34	0	0	23	9	28.125
NBEAL2	0	genome.wustl.edu	37	3	47040832	47040832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	47040832	47040832	C	T	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.3571	p.R1191W	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				18	0	0	22	2	8.33333
ITPR1	0	genome.wustl.edu	37	3	4821278	4821278	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	4821278	4821278	C	T	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	silent	c.6291	p.H2097	0.986	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				100	0	0	100	14	12.2807
LAMB2	0	genome.wustl.edu	37	3	49168514	49168514	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	49168514	49168514	G	T	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	missense	c.784	p.P262T	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				78	0	0	75	12	13.7931
RBM6	0	genome.wustl.edu	37	3	50099450	50099450	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	50099450	50099450	A	G	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	missense	c.2495	p.E832G	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				49	0	0	48	13	21.3115
DOCK3	0	genome.wustl.edu	37	3	51101994	51101994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	51101994	51101994	G	A	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.431	p.R144Q	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				76	0	0	76	22	22.449
PCBP4	0	genome.wustl.edu	37	3	51993974	51993974	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	51993974	51993974	C	T	SNP	PCBP4	ENST00000395014	human	ensembl	74_37	-1	known	silent	c.516	p.T172	0.009	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP4	HGNC	ENSG00000090097				104	0	0	84	21	20
NISCH	0	genome.wustl.edu	37	3	52522496	52522496	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	52522496	52522496	C	T	SNP	NISCH	ENST00000345716	human	ensembl	74_37	+1	known	silent	c.2988	p.R996	0.103	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322				78	0	0	79	14	15.0538
EDEM1	0	genome.wustl.edu	37	3	5255177	5255177	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	5255177	5255177	T	C	SNP	EDEM1	ENST00000256497	human	ensembl	74_37	+1	known	silent	c.1854	p.H618	0.000	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM1	HGNC	ENSG00000134109				35	0	0	28	8	22.2222
PBRM1	0	genome.wustl.edu	37	3	52702537	52702537	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	52702537	52702537	T	A	SNP	PBRM1	ENST00000296302	human	ensembl	74_37	-1	known	missense	c.361	p.N121Y	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_box_dom,superfamily_Bromodomain,superfamily_HMG_box_dom,smart_Bromodomain,smart_BAH_dom,smart_HMG_box_dom,pfscan_BAH_dom,pfscan_HMG_box_dom,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939				22	0	0	13	5	27.7778
PBRM1	0	genome.wustl.edu	37	3	52702554	52702554	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	52702554	52702554	T	A	SNP	PBRM1	ENST00000296302	human	ensembl	74_37	-1	known	missense	c.344	p.D115V	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_box_dom,superfamily_Bromodomain,superfamily_HMG_box_dom,smart_Bromodomain,smart_BAH_dom,smart_HMG_box_dom,pfscan_BAH_dom,pfscan_HMG_box_dom,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939				27	0	0	16	5	23.8095
CACNA1D	0	genome.wustl.edu	37	3	53736702	53736702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	53736702	53736702	C	T	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.1255	p.R419W	0.984	prints_VDCCAlpha1,prints_VDCC_L_a1su	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				51	0	0	40	11	21.5686
FLNB	0	genome.wustl.edu	37	3	58141780	58141780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	58141780	58141780	G	A	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	missense	c.6866	p.R2289H	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				56	0	0	64	5	7.24638
PTPRG	0	genome.wustl.edu	37	3	62258636	62258636	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	62258636	62258636	A	C	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.3198	p.R1066S	0.996	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				51	0	0	40	7	14.8936
GRM7	0	genome.wustl.edu	37	3	7721878	7721878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	7721878	7721878	C	T	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.2594	p.A865V	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				69	0	0	45	14	23.7288
COL8A1	0	genome.wustl.edu	37	3	99514770	99514770	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	99514770	99514770	G	T	SNP	COL8A1	ENST00000261037	human	ensembl	74_37	+1	known	missense	c.2025	p.W675C	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810				65	0	0	56	14	20
SLC9B1	0	genome.wustl.edu	37	4	103822279	103822279	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	103822279	103822279	G	T	SNP	SLC9B1	ENST00000296422	human	ensembl	74_37	-1	known	missense	c.1543	p.H515N	0.200	NULL	pfam_Cation/H_exchanger	-	no_errors	SLC9B1	HGNC	ENSG00000164037				116	0	0	93	12	11.4286
TET2	0	genome.wustl.edu	37	4	106157081	106157081	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	106157081	106157081	A	G	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.1982	p.H661R	0.088	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769				60	0	0	47	13	21.6667
CCDC109B	0	genome.wustl.edu	37	4	110606496	110606496	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	110606496	110606496	C	T	SNP	CCDC109B	ENST00000394650	human	ensembl	74_37	+1	known	silent	c.906	p.Y302	1.000	pfam_Coiled-coil-dom_prot_109_C	pfam_Coiled-coil-dom_prot_109_C	-	no_errors	CCDC109B	HGNC	ENSG00000005059				33	0	0	27	4	12.9032
NDST4	0	genome.wustl.edu	37	4	115858656	115858656	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	115858656	115858656	G	A	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	missense	c.1225	p.H409Y	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653				45	0	0	47	13	21.6667
KIAA1109	0	genome.wustl.edu	37	4	123202741	123202741	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	123202741	123202741	C	A	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.8849	p.T2950N	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				55	0	0	47	10	17.5439
KIAA1109	0	genome.wustl.edu	37	4	123237962	123237962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	123237962	123237962	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.10615	p.R3539C	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				66	0	0	44	14	24.1379
TBC1D9	0	genome.wustl.edu	37	4	141543721	141543721	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	141543721	141543721	G	A	SNP	TBC1D9	ENST00000442267	human	ensembl	74_37	-1	known	silent	c.3429	p.N1143	0.894	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436				104	0	0	95	23	19.4915
DCLK2	0	genome.wustl.edu	37	4	151000236	151000236	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	151000236	151000236	G	A	SNP	DCLK2	ENST00000302176	human	ensembl	74_37	+1	known	silent	c.57	p.P19	1.000	NULL	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390				26	0	0	17	6	26.087
PET112	0	genome.wustl.edu	37	4	152629223	152629223	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	152629223	152629223	G	A	SNP	PET112	ENST00000263985	human	ensembl	74_37	-1	known	missense	c.794	p.S265F	1.000	pfam_Asn/Gln-tRNA_Trfase_suB/E_cat,tigrfam_Apn/Gln-ADT_bsu	pfam_Asn/Gln-tRNA_Trfase_suB/E_cat,pfam_Asn/Gln_amidotransferase,superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Asn/Gln_amidotransferase,tigrfam_Apn/Gln-ADT_bsu	-	no_errors	PET112	HGNC	ENSG00000059691				56	0	0	49	8	14.0351
LRAT	0	genome.wustl.edu	37	4	155665737	155665737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	155665737	155665737	C	T	SNP	LRAT	ENST00000336356	human	ensembl	74_37	+1	known	missense	c.259	p.R87C	0.417	NULL	pfam_LRAT-like_dom	-	no_errors	LRAT	HGNC	ENSG00000121207				50	0	0	57	11	16.1765
NPY2R	0	genome.wustl.edu	37	4	156135336	156135336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	156135336	156135336	G	A	SNP	NPY2R	ENST00000329476	human	ensembl	74_37	+1	known	missense	c.245	p.R82H	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY2_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	NPY2R	HGNC	ENSG00000185149				51	0	0	46	8	14.8148
GRIA2	0	genome.wustl.edu	37	4	158233993	158233993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	158233993	158233993	G	A	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	missense	c.632	p.C211Y	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				141	0	0	85	19	18.2692
FAM198B	0	genome.wustl.edu	37	4	159091771	159091771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	159091771	159091771	C	T	SNP	FAM198B	ENST00000393807	human	ensembl	74_37	-1	known	missense	c.757	p.A253T	0.000	NULL	NULL	-	no_errors	FAM198B	HGNC	ENSG00000164125				41	0	0	47	15	24.1935
RXFP1	0	genome.wustl.edu	37	4	159493936	159493936	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	159493936	159493936	C	T	SNP	RXFP1	ENST00000307765	human	ensembl	74_37	+1	known	missense	c.136	p.H46Y	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt,prints_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	-	no_errors	RXFP1	HGNC	ENSG00000171509				104	0	0	103	16	13.4454
RXFP1	0	genome.wustl.edu	37	4	159526258	159526258	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	159526258	159526258	A	G	SNP	RXFP1	ENST00000307765	human	ensembl	74_37	+1	known	missense	c.431	p.D144G	0.956	smart_Leu-rich_rpt_typical-subtyp	pfam_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt,prints_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	-	no_errors	RXFP1	HGNC	ENSG00000171509				39	0	0	19	4	17.3913
DDX60L	0	genome.wustl.edu	37	4	169336605	169336605	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	169336605	169336605	A	C	SNP	DDX60L	ENST00000260184	human	ensembl	74_37	-1	known	missense	c.2933	p.V978G	0.006	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381				38	0	0	22	5	18.5185
ADAM29	0	genome.wustl.edu	37	4	175898136	175898136	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	175898136	175898136	G	A	SNP	ADAM29	ENST00000359240	human	ensembl	74_37	+1	known	missense	c.1460	p.C487Y	0.041	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594				101	0	0	84	26	23.6364
NEIL3	0	genome.wustl.edu	37	4	178262784	178262784	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	178262784	178262784	A	G	SNP	NEIL3	ENST00000264596	human	ensembl	74_37	+1	known	missense	c.857	p.H286R	0.000	NULL	pfam_Znf_GRF,pfam_DNA_glyclase/AP_lyase_DNA-bd,pfam_Znf_RanBP2,superfamily_Ribosomal_S13-like_H2TH,superfamily_DNA_glycosylase/AP_lyase_cat,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_Znf_DNA_glyclase/AP_lyase,pfscan_DNA_glycosylase/AP_lyase_cat	-	no_errors	NEIL3	HGNC	ENSG00000109674				23	0	0	23	5	17.8571
LCORL	0	genome.wustl.edu	37	4	17847433	17847433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	17847433	17847433	G	A	SNP	LCORL	ENST00000326877	human	ensembl	74_37	-1	known	missense	c.868	p.R290C	1.000	NULL	NULL	-	no_errors	LCORL	HGNC	ENSG00000178177				119	0	0	72	13	15.2941
TENM3	0	genome.wustl.edu	37	4	183267894	183267894	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	183267894	183267894	G	T	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.323	p.R108I	1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				22	0	0	22	5	18.5185
STOX2	0	genome.wustl.edu	37	4	184930580	184930580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	184930580	184930580	G	A	SNP	STOX2	ENST00000308497	human	ensembl	74_37	+1	known	missense	c.589	p.D197N	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX2	HGNC	ENSG00000173320				92	0	0	88	25	22.1239
ZFP42	0	genome.wustl.edu	37	4	188924176	188924176	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	188924176	188924176	A	G	SNP	ZFP42	ENST00000326866	human	ensembl	74_37	+1	known	missense	c.215	p.Y72C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP42	HGNC	ENSG00000179059				70	0	0	54	13	19.403
TRIML1	0	genome.wustl.edu	37	4	189068025	189068025	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	189068025	189068025	G	A	SNP	TRIML1	ENST00000332517	human	ensembl	74_37	+1	known	silent	c.906	p.S302	0.076	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIML1	HGNC	ENSG00000184108				180	0	0	140	24	14.6341
HSP90AA4P	0	genome.wustl.edu	37	4	190394377	190394377	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	190394377	190394377	C	T	SNP	HSP90AA4P	ENST00000378770	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSP90AA4P	HGNC	ENSG00000205100				35	0	0	32	6	15.7895
SEL1L3	0	genome.wustl.edu	37	4	25849008	25849008	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	25849008	25849008	G	T	SNP	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	missense	c.641	p.P214H	1.000	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490				64	0	0	39	8	17.0213
PCDH7	0	genome.wustl.edu	37	4	30724711	30724711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	30724711	30724711	C	T	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.1667	p.T556M	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				62	0	0	51	12	19.0476
HGFAC	0	genome.wustl.edu	37	4	3451076	3451076	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	3451076	3451076	G	A	SNP	HGFAC	ENST00000382774	human	ensembl	74_37	+1	known	missense	c.1898	p.R633H	0.791	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EG-like_dom,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGFAC	HGNC	ENSG00000109758				59	0	0	74	19	20.4301
KLB	0	genome.wustl.edu	37	4	39408583	39408583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	39408583	39408583	G	A	SNP	KLB	ENST00000257408	human	ensembl	74_37	+1	known	missense	c.14	p.C5Y	0.997	NULL	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KLB	HGNC	ENSG00000134962				31	0	0	22	6	21.4286
KLB	0	genome.wustl.edu	37	4	39448221	39448221	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	39448221	39448221	C	T	SNP	KLB	ENST00000257408	human	ensembl	74_37	+1	known	silent	c.1875	p.C625	0.994	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KLB	HGNC	ENSG00000134962				64	0	0	72	19	20.8791
NFXL1	0	genome.wustl.edu	37	4	47901013	47901013	+	Silent	SNP	A	A	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	47901013	47901013	A	T	SNP	NFXL1	ENST00000381538	human	ensembl	74_37	-1	known	silent	c.951	p.L317	0.936	NULL	pfam_Znf_NFX1,smart_Znf_NFX1,pfscan_Znf_RING	-	no_errors	NFXL1	HGNC	ENSG00000170448				83	0	0	43	13	23.2143
SPATA18	0	genome.wustl.edu	37	4	52943184	52943184	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	52943184	52943184	G	A	SNP	SPATA18	ENST00000295213	human	ensembl	74_37	+1	known	missense	c.998	p.R333Q	1.000	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071				22	0	0	21	6	22.2222
PDGFRA	0	genome.wustl.edu	37	4	55138612	55138612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	55138612	55138612	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	74_37	+1	known	missense	c.1289	p.G430E	0.679	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRA	HGNC	ENSG00000134853				56	0	0	57	12	17.3913
EXOC1	0	genome.wustl.edu	37	4	56736875	56736875	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	56736875	56736875	A	G	SNP	EXOC1	ENST00000346134	human	ensembl	74_37	+1	known	missense	c.635	p.K212R	1.000	pfam_Exocyst_Exoc1/SEC3	pfam_Exocyst_Exoc1/SEC3	-	no_errors	EXOC1	HGNC	ENSG00000090989				66	0	0	45	7	13.4615
EPHA5	0	genome.wustl.edu	37	4	66467570	66467570	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	66467570	66467570	G	A	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	silent	c.699	p.C233	1.000	pfam_Ephrin_rcpt_lig-bd_dom,smart_Ephrin_rcpt_lig-bd_dom,pirsf_Tyr_kinase_ephrin_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				52	0	0	44	9	16.9811
MFSD7	0	genome.wustl.edu	37	4	678306	678306	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	678306	678306	A	G	SNP	MFSD7	ENST00000404286	human	ensembl	74_37	-1	known	missense	c.809	p.L270P	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD7	HGNC	ENSG00000169026				121	0	0	104	25	19.3798
TMPRSS11A	0	genome.wustl.edu	37	4	68784721	68784721	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	68784721	68784721	T	C	SNP	TMPRSS11A	ENST00000334830	human	ensembl	74_37	-1	known	missense	c.931	p.I311V	0.832	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_HAT/DESC1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_SEA_dom,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_HAT/DESC1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS11A	HGNC	ENSG00000187054				117	0	0	81	28	25.6881
PCGF3	0	genome.wustl.edu	37	4	727522	727522	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	727522	727522	G	A	SNP	PCGF3	ENST00000362003	human	ensembl	74_37	+1	known	missense	c.53	p.R18H	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF3	HGNC	ENSG00000185619				104	0	0	94	20	17.5439
AFAP1	0	genome.wustl.edu	37	4	7776532	7776532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	7776532	7776532	G	A	SNP	AFAP1	ENST00000420658	human	ensembl	74_37	-1	known	missense	c.1996	p.R666W	0.993	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC	ENSG00000196526				83	0	0	63	16	20.2532
FRAS1	0	genome.wustl.edu	37	4	79373470	79373470	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	79373470	79373470	A	C	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.6725	p.Q2242P	0.999	superfamily_Cadherin-like	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				35	0	0	45	6	11.7647
SH3TC1	0	genome.wustl.edu	37	4	8233879	8233879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	8233879	8233879	G	A	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	missense	c.3127	p.E1043K	0.997	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				20	0	0	22	6	21.4286
THAP9	0	genome.wustl.edu	37	4	83839452	83839452	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	83839452	83839452	G	T	SNP	THAP9	ENST00000302236	human	ensembl	74_37	+1	known	missense	c.2087	p.W696L	0.979	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152				144	0	0	110	6	5.17241
GRID2	0	genome.wustl.edu	37	4	94032058	94032058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	94032058	94032058	C	T	SNP	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	missense	c.689	p.A230V	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208				89	0	0	72	5	6.49351
PDLIM5	0	genome.wustl.edu	37	4	95539205	95539205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	95539205	95539205	G	A	SNP	PDLIM5	ENST00000317968	human	ensembl	74_37	+1	known	missense	c.971	p.R324Q	0.023	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM5	HGNC	ENSG00000163110				43	0	0	36	14	28
SLCO6A1	0	genome.wustl.edu	37	5	101834417	101834417	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	101834417	101834417	G	A	SNP	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	silent	c.132	p.P44	0.000	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359				228	0	0	293	59	16.7614
STARD4	0	genome.wustl.edu	37	5	110836635	110836635	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	110836635	110836635	C	A	SNP	STARD4	ENST00000502322	human	ensembl	74_37	-1	putative	missense	c.462	p.W154C	0.000	NULL	pfam_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	STARD4	HGNC	ENSG00000164211				34	0	0	29	6	17.1429
MCC	0	genome.wustl.edu	37	5	112399732	112399732	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	112399732	112399732	G	A	SNP	MCC	ENST00000302475	human	ensembl	74_37	-1	known	missense	c.1592	p.A531V	0.994	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444				78	0	0	115	20	14.8148
SLC12A2	0	genome.wustl.edu	37	5	127487003	127487003	+	Silent	SNP	A	A	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	127487003	127487003	A	T	SNP	SLC12A2	ENST00000262461	human	ensembl	74_37	+1	known	silent	c.2178	p.V726	0.996	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651				116	0	0	75	18	19.3548
ADAMTS19	0	genome.wustl.edu	37	5	129037216	129037216	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	129037216	129037216	G	T	SNP	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	missense	c.3072	p.K1024N	0.993	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808				79	0	0	75	15	16.6667
TERT	0	genome.wustl.edu	37	5	1294681	1294681	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	1294681	1294681	G	T	SNP	TERT	ENST00000310581	human	ensembl	74_37	-1	known	missense	c.320	p.A107D	0.001	NULL	pfam_Telomerase_RBD,pfam_RVT,smart_Telomerase_RBD,pfscan_RVT,prints_Telomerase_RT	-	no_errors	TERT	HGNC	ENSG00000164362				15	0	0	15	6	28.5714
PDLIM4	0	genome.wustl.edu	37	5	131606734	131606734	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	131606734	131606734	G	A	SNP	PDLIM4	ENST00000253754	human	ensembl	74_37	+1	known	missense	c.454	p.E152K	1.000	NULL	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM4	HGNC	ENSG00000131435				195	0	0	170	59	25.7642
RAD50	0	genome.wustl.edu	37	5	131973851	131973851	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	131973851	131973851	G	A	SNP	RAD50	ENST00000265335	human	ensembl	74_37	+1	known	missense	c.3554	p.R1185Q	1.000	superfamily_P-loop_NTPase,tigrfam_Rad50_eukaryotes	pfam_Rad50_Zn_hook,superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	-	no_errors	RAD50	HGNC	ENSG00000113522				71	0	0	48	18	27.2727
KIF3A	0	genome.wustl.edu	37	5	132061858	132061858	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	132061858	132061858	G	A	SNP	KIF3A	ENST00000378735	human	ensembl	74_37	-1	known	missense	c.472	p.R158C	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF3A	HGNC	ENSG00000131437				36	0	0	36	5	12.1951
DNAH5	0	genome.wustl.edu	37	5	13729585	13729585	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	13729585	13729585	A	C	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.11846	p.L3949R	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				109	0	0	71	17	19.3182
GFRA3	0	genome.wustl.edu	37	5	137599951	137599951	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	137599951	137599951	A	G	SNP	GFRA3	ENST00000274721	human	ensembl	74_37	-1	known	silent	c.378	p.L126	0.997	NULL	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013				90	0	0	69	10	12.6582
GFRA3	0	genome.wustl.edu	37	5	137599991	137599991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	137599991	137599991	C	T	SNP	GFRA3	ENST00000274721	human	ensembl	74_37	-1	known	missense	c.338	p.C113Y	1.000	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013				85	0	0	73	10	12.0482
KDM3B	0	genome.wustl.edu	37	5	137708479	137708479	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	137708479	137708479	C	T	SNP	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	silent	c.309	p.D103	0.979	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				67	0	0	55	8	12.6984
PCDHA7	0	genome.wustl.edu	37	5	140215698	140215698	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140215698	140215698	T	C	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.1730	p.V577A	0.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				131	0	0	155	37	19.2708
PCDHA8	0	genome.wustl.edu	37	5	140222458	140222458	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140222458	140222458	T	C	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	missense	c.1552	p.Y518H	0.904	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				171	0	0	273	57	17.2727
PCDHA11	0	genome.wustl.edu	37	5	140249249	140249249	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140249249	140249249	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	silent	c.561	p.K187	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				86	0	0	71	5	6.57895
PCDHA12	0	genome.wustl.edu	37	5	140256404	140256404	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140256404	140256404	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	silent	c.1347	p.N449	0.986	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				182	0	0	222	52	18.9781
PCDHA12	0	genome.wustl.edu	37	5	140257030	140257030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140257030	140257030	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	missense	c.1973	p.A658V	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				77	0	0	78	11	12.3596
PCDHAC2	0	genome.wustl.edu	37	5	140346798	140346798	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140346798	140346798	G	A	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	silent	c.447	p.P149	0.994	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				34	0	0	58	13	18.3099
PCDHB2	0	genome.wustl.edu	37	5	140474496	140474496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140474496	140474496	C	T	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	missense	c.122	p.T41M	0.000	pfam_Cadherin_N,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				76	0	0	63	10	13.6986
PCDHB3	0	genome.wustl.edu	37	5	140480564	140480564	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140480564	140480564	C	T	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	nonsense	c.331	p.Q111*	0.668	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				114	1	0.869565	83	24	22.4299
PCDHB3	0	genome.wustl.edu	37	5	140482112	140482112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140482112	140482112	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1879	p.A627T	0.027	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				115	0	0	192	42	17.9487
ENSG00000255622	0	genome.wustl.edu	37	5	140536905	140536905	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140536905	140536905	C	T	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	silent	c.1329	p.S443	0.917	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622				176	0	0	188	43	18.6147
PCDHB16	0	genome.wustl.edu	37	5	140564388	140564388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140564388	140564388	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	missense	c.2254	p.E752K	0.994	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				133	0	0	176	37	17.3709
PCDHB11	0	genome.wustl.edu	37	5	140580935	140580935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140580935	140580935	C	T	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.1588	p.R530C	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				150	0	0	182	49	21.2121
PCDHB12	0	genome.wustl.edu	37	5	140590609	140590609	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140590609	140590609	G	A	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	silent	c.2130	p.A710	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				211	0	0	253	66	20.6897
PCDHB15	0	genome.wustl.edu	37	5	140626606	140626606	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140626606	140626606	C	A	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.1460	p.T487N	0.949	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				166	0	0	207	44	17.5299
PCDHGB3	0	genome.wustl.edu	37	5	140751609	140751609	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140751609	140751609	G	A	SNP	PCDHGB3	ENST00000576222	human	ensembl	74_37	+1	known	missense	c.1648	p.V550M	0.035	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209				56	0	0	60	5	7.69231
PCDHGA7	0	genome.wustl.edu	37	5	140764749	140764749	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140764749	140764749	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	silent	c.2283	p.A761	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537				173	0	0	163	28	14.6597
PCDHGA9	0	genome.wustl.edu	37	5	140783914	140783914	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140783914	140783914	C	T	SNP	PCDHGA9	ENST00000573521	human	ensembl	74_37	+1	known	silent	c.1395	p.N465	0.008	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934				50	0	0	44	16	26.6667
PCDHGB8P	0	genome.wustl.edu	37	5	140807542	140807542	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140807542	140807542	C	T	SNP	PCDHGB8P	ENST00000502926	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.865	-	-	-	no_errors	PCDHGB8P	HGNC	ENSG00000248449				55	0	0	70	9	11.3924
PCDHGB8P	0	genome.wustl.edu	37	5	140807650	140807650	+	RNA	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140807650	140807650	C	A	SNP	PCDHGB8P	ENST00000502926	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PCDHGB8P	HGNC	ENSG00000248449				49	0	0	60	10	14.2857
PCDHGC5	0	genome.wustl.edu	37	5	140870540	140870540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140870540	140870540	G	A	SNP	PCDHGC5	ENST00000252087	human	ensembl	74_37	+1	known	missense	c.1733	p.R578H	0.998	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764				71	0	0	76	15	16.4835
TRIO	0	genome.wustl.edu	37	5	14498708	14498708	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	14498708	14498708	A	C	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.8291	p.D2764A	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				126	0	0	123	29	19.0789
FBXO38	0	genome.wustl.edu	37	5	147778563	147778563	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	147778563	147778563	T	C	SNP	FBXO38	ENST00000340253	human	ensembl	74_37	+1	known	missense	c.130	p.Y44H	1.000	superfamily_F-box_dom	superfamily_F-box_dom	-	no_errors	FBXO38	HGNC	ENSG00000145868				54	0	0	68	6	8.10811
GLRA1	0	genome.wustl.edu	37	5	151239373	151239373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	151239373	151239373	C	T	SNP	GLRA1	ENST00000455880	human	ensembl	74_37	-1	known	missense	c.449	p.R150Q	0.998	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Glycine_rcpt_A1,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA1	HGNC	ENSG00000145888				61	0	0	51	11	17.7419
RNF145	0	genome.wustl.edu	37	5	158586021	158586021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	158586021	158586021	G	A	SNP	RNF145	ENST00000518802	human	ensembl	74_37	-1	known	missense	c.1739	p.T580M	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860				64	0	0	46	10	17.8571
CCNJL	0	genome.wustl.edu	37	5	159686753	159686753	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	159686753	159686753	G	A	SNP	CCNJL	ENST00000393977	human	ensembl	74_37	-1	known	silent	c.450	p.H150	0.004	superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_C-dom,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJL	HGNC	ENSG00000135083				86	0	0	84	20	19.2308
STK10	0	genome.wustl.edu	37	5	171488254	171488254	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	171488254	171488254	T	G	SNP	STK10	ENST00000176763	human	ensembl	74_37	-1	known	missense	c.2101	p.K701Q	0.924	pfam_PKK	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK10	HGNC	ENSG00000072786				149	0	0	147	25	14.5349
SH3PXD2B	0	genome.wustl.edu	37	5	171821626	171821626	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	171821626	171821626	G	A	SNP	SH3PXD2B	ENST00000311601	human	ensembl	74_37	-1	known	nonsense	c.250	p.R84*	0.246	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705				21	0	0	27	4	12.9032
DUSP1	0	genome.wustl.edu	37	5	172195896	172195896	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	172195896	172195896	C	T	SNP	DUSP1	ENST00000239223	human	ensembl	74_37	-1	known	missense	c.973	p.A325T	1.000	pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP1	HGNC	ENSG00000120129				81	0	0	87	15	14.7059
CLTB	0	genome.wustl.edu	37	5	175824994	175824994	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	175824994	175824994	T	C	SNP	CLTB	ENST00000310418	human	ensembl	74_37	-1	known	missense	c.289	p.T97A	0.999	pfam_Clathrin_L-chain,superfamily_RuBisCO_lsu_C	pfam_Clathrin_L-chain,superfamily_RuBisCO_lsu_C	-	no_errors	CLTB	HGNC	ENSG00000175416				108	0	0	157	27	14.6739
PDLIM7	0	genome.wustl.edu	37	5	176916516	176916516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	176916516	176916516	C	T	SNP	PDLIM7	ENST00000356618	human	ensembl	74_37	-1	known	missense	c.685	p.G229S	0.541	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDLIM7	HGNC	ENSG00000196923				11	0	0	17	4	19.0476
HNRNPH1	0	genome.wustl.edu	37	5	179045188	179045188	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	179045188	179045188	C	A	SNP	HNRNPH1	ENST00000356731	human	ensembl	74_37	-1	known	nonsense	c.673	p.G225*	1.000	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH1	HGNC	ENSG00000169045				159	0	0	136	23	14.4654
TBC1D9B	0	genome.wustl.edu	37	5	179290716	179290716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	179290716	179290716	G	A	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.3485	p.T1162M	0.947	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				96	0	0	117	19	13.9706
TBC1D9B	0	genome.wustl.edu	37	5	179305416	179305416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	179305416	179305416	G	A	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.1675	p.R559C	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				12	0	0	21	8	27.5862
C5orf42	0	genome.wustl.edu	37	5	37183092	37183092	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	37183092	37183092	C	A	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	nonsense	c.5191	p.E1731*	0.726	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				87	0	0	48	11	18.6441
RICTOR	0	genome.wustl.edu	37	5	38960545	38960545	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	38960545	38960545	C	T	SNP	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	silent	c.1806	p.T602	0.951	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				115	0	0	78	18	18.75
NIM1	0	genome.wustl.edu	37	5	43280418	43280418	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	43280418	43280418	C	T	SNP	NIM1	ENST00000326035	human	ensembl	74_37	+1	known	nonsense	c.898	p.R300*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NIM1	Uniprot_gn	ENSG00000177453				107	0	0	76	24	24
ADAMTS16	0	genome.wustl.edu	37	5	5232586	5232586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	5232586	5232586	G	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.1807	p.G603R	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				107	0	0	110	12	9.83607
ADAMTS16	0	genome.wustl.edu	37	5	5303727	5303727	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	5303727	5303727	G	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.3034	p.A1012T	0.970	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				60	0	0	62	16	20.5128
ADAMTS16	0	genome.wustl.edu	37	5	5306762	5306762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	5306762	5306762	C	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.3332	p.P1111L	0.015	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				47	0	0	38	6	13.6364
PDE4D	0	genome.wustl.edu	37	5	59284456	59284456	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	59284456	59284456	C	T	SNP	PDE4D	ENST00000502484	human	ensembl	74_37	-1	known	missense	c.131	p.R44H	1.000	NULL	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448				111	0	0	82	22	21.1538
HTR1A	0	genome.wustl.edu	37	5	63257400	63257400	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	63257400	63257400	G	A	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	silent	c.147	p.C49	1.000	pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				46	0	0	66	6	8.33333
CEP72	0	genome.wustl.edu	37	5	634017	634017	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	634017	634017	A	G	SNP	CEP72	ENST00000264935	human	ensembl	74_37	+1	known	missense	c.646	p.S216G	0.002	NULL	smart_Leu-rich_rpt_typical-subtyp,smart_U2A'_phosphoprotein32A_C	-	no_errors	CEP72	HGNC	ENSG00000112877				125	0	0	136	29	17.5758
ZNF366	0	genome.wustl.edu	37	5	71756924	71756924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	71756924	71756924	C	T	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	missense	c.400	p.V134M	0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				164	0	0	159	28	14.9733
GFM2	0	genome.wustl.edu	37	5	74034388	74034388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	74034388	74034388	G	A	SNP	GFM2	ENST00000296805	human	ensembl	74_37	-1	known	missense	c.1159	p.R387C	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_EFG_III-V,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM2	HGNC	ENSG00000164347				74	0	0	67	11	14.1026
PDE8B	0	genome.wustl.edu	37	5	76704735	76704735	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	76704735	76704735	T	C	SNP	PDE8B	ENST00000264917	human	ensembl	74_37	+1	known	silent	c.1383	p.N461	0.974	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_PDE8,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,pfam_PAS_fold_3,superfamily_PAS,superfamily_CheY-like_superfamily,smart_PAS,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8B	HGNC	ENSG00000113231				79	0	0	74	12	13.9535
AP3B1	0	genome.wustl.edu	37	5	77563404	77563404	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	77563404	77563404	C	A	SNP	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	missense	c.144	p.K48N	0.999	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				32	0	0	21	3	12.5
MTRR	0	genome.wustl.edu	37	5	7900236	7900236	+	RNA	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	7900236	7900236	A	G	SNP	MTRR	ENST00000506115	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MTRR	HGNC	ENSG00000124275				20	0	0	16	4	20
SEMA5A	0	genome.wustl.edu	37	5	9122806	9122806	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	9122806	9122806	C	T	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	silent	c.1743	p.Q581	0.714	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				75	0	0	70	27	27.8351
TTC37	0	genome.wustl.edu	37	5	94852450	94852450	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	94852450	94852450	A	G	SNP	TTC37	ENST00000358746	human	ensembl	74_37	-1	known	missense	c.2441	p.L814P	1.000	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677				41	0	0	18	7	28
PRDM13	0	genome.wustl.edu	37	6	100062567	100062567	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	100062567	100062567	G	T	SNP	PRDM13	ENST00000369215	human	ensembl	74_37	+1	known	missense	c.2056	p.V686L	1.000	NULL	smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM13	HGNC	ENSG00000112238				58	0	0	61	25	29.0698
SYCP2L	0	genome.wustl.edu	37	6	10961554	10961554	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	10961554	10961554	C	T	SNP	SYCP2L	ENST00000283141	human	ensembl	74_37	+1	known	missense	c.2272	p.R758C	0.000	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157				49	0	0	35	5	12.5
NEDD9	0	genome.wustl.edu	37	6	11193859	11193859	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	11193859	11193859	C	T	SNP	NEDD9	ENST00000379446	human	ensembl	74_37	-1	known	missense	c.526	p.V176I	0.995	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NEDD9	HGNC	ENSG00000111859				64	0	0	46	10	17.8571
LAMA4	0	genome.wustl.edu	37	6	112493824	112493824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	112493824	112493824	G	A	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	missense	c.1540	p.R514W	1.000	pfam_Laminin_I	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				58	0	0	44	16	26.6667
FAM162B	0	genome.wustl.edu	37	6	117086316	117086316	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	117086316	117086316	C	T	SNP	FAM162B	ENST00000368557	human	ensembl	74_37	-1	known	missense	c.275	p.R92Q	0.000	pfam_DUF1075	pfam_DUF1075	-	no_errors	FAM162B	HGNC	ENSG00000183807				65	0	0	72	18	20
GOPC	0	genome.wustl.edu	37	6	117894635	117894635	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	117894635	117894635	C	A	SNP	GOPC	ENST00000368498	human	ensembl	74_37	-1	known	missense	c.811	p.G271C	1.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GOPC	HGNC	ENSG00000047932				48	0	0	58	14	19.4444
CEP85L	0	genome.wustl.edu	37	6	118886986	118886986	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	118886986	118886986	G	A	SNP	CEP85L	ENST00000368488	human	ensembl	74_37	-1	known	silent	c.735	p.A245	0.997	NULL	NULL	-	no_errors	CEP85L	HGNC	ENSG00000111860				101	0	0	80	23	22.3301
SERINC1	0	genome.wustl.edu	37	6	122768329	122768329	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	122768329	122768329	T	G	SNP	SERINC1	ENST00000339697	human	ensembl	74_37	-1	known	missense	c.932	p.Q311P	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC1	HGNC	ENSG00000111897				158	0	0	104	22	17.4603
STX7	0	genome.wustl.edu	37	6	132792740	132792740	+	Splice_Site	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	132792740	132792740	C	T	SNP	STX7	ENST00000367941	human	ensembl	74_37	-1	known	splice_site	c.250-1	e4-1	1.000	-	-	-	no_errors	STX7	HGNC	ENSG00000079950				101	0	0	68	16	19.0476
IL20RA	0	genome.wustl.edu	37	6	137329814	137329814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	137329814	137329814	C	T	SNP	IL20RA	ENST00000316649	human	ensembl	74_37	-1	known	missense	c.646	p.V216I	0.007	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL20RA	HGNC	ENSG00000016402				91	0	0	107	28	20.7407
HEBP2	0	genome.wustl.edu	37	6	138727266	138727266	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	138727266	138727266	G	T	SNP	HEBP2	ENST00000607197	human	ensembl	74_37	+1	known	missense	c.397	p.A133S	0.983	pfam_SOUL_haem-bd,superfamily_Reg_factor_effector_dom	pfam_SOUL_haem-bd,superfamily_Reg_factor_effector_dom	-	no_errors	HEBP2	HGNC	ENSG00000051620				199	0	0	134	25	15.7233
RNF182	0	genome.wustl.edu	37	6	13977703	13977703	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	13977703	13977703	T	C	SNP	RNF182	ENST00000488300	human	ensembl	74_37	+1	known	missense	c.353	p.L118P	0.996	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF182	HGNC	ENSG00000180537				59	0	0	54	13	19.403
HIVEP2	0	genome.wustl.edu	37	6	143094969	143094969	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	143094969	143094969	G	A	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	silent	c.907	p.L303	0.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				90	0	0	71	11	13.4146
STX11	0	genome.wustl.edu	37	6	144507947	144507947	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	144507947	144507947	C	T	SNP	STX11	ENST00000367568	human	ensembl	74_37	+1	known	silent	c.183	p.D61	1.000	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX11	HGNC	ENSG00000135604				21	0	0	42	11	20.7547
ULBP1	0	genome.wustl.edu	37	6	150290471	150290471	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	150290471	150290471	C	T	SNP	ULBP1	ENST00000229708	human	ensembl	74_37	+1	known	silent	c.600	p.Y200	0.001	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP1	HGNC	ENSG00000111981				121	0	0	108	20	15.625
SYNE1	0	genome.wustl.edu	37	6	152472791	152472791	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	152472791	152472791	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.24347	p.A8116V	1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				37	0	0	23	9	28.125
SYNE1	0	genome.wustl.edu	37	6	152560775	152560775	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	152560775	152560775	A	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.19960	p.F6654L	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				64	0	0	57	12	17.3913
WTAP	0	genome.wustl.edu	37	6	160176302	160176302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	160176302	160176302	C	T	SNP	WTAP	ENST00000358372	human	ensembl	74_37	+1	known	missense	c.850	p.R284C	1.000	NULL	NULL	-	no_errors	WTAP	HGNC	ENSG00000146457				60	0	0	60	13	17.8082
WTAP	0	genome.wustl.edu	37	6	160176303	160176303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	160176303	160176303	G	A	SNP	WTAP	ENST00000358372	human	ensembl	74_37	+1	known	missense	c.851	p.R284H	0.965	NULL	NULL	-	no_errors	WTAP	HGNC	ENSG00000146457				61	0	0	62	9	12.6761
PLG	0	genome.wustl.edu	37	6	161173964	161173964	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	161173964	161173964	G	T	SNP	PLG	ENST00000308192	human	ensembl	74_37	+1	known	missense	c.2304	p.E768D	0.998	pirsf_Pept_S1A_plasmin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	PLG	HGNC	ENSG00000122194				48	0	0	49	10	16.9492
DLL1	0	genome.wustl.edu	37	6	170597853	170597853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	170597853	170597853	C	T	SNP	DLL1	ENST00000366756	human	ensembl	74_37	-1	known	missense	c.376	p.A126T	1.000	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719				130	0	0	86	13	13.1313
TBP	0	genome.wustl.edu	37	6	170878836	170878836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	170878836	170878836	G	A	SNP	TBP	ENST00000230354	human	ensembl	74_37	+1	known	missense	c.814	p.G272S	1.000	pfam_TBP	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592				37	0	0	25	4	13.7931
KAAG1	0	genome.wustl.edu	37	6	24358064	24358064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	24358064	24358064	C	T	SNP	KAAG1	ENST00000274766	human	ensembl	74_37	+1	known	missense	c.197	p.A66V	0.000	NULL	NULL	-	no_errors	KAAG1	HGNC	ENSG00000146049				34	0	0	63	21	25
TRIM26	0	genome.wustl.edu	37	6	30153714	30153714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	30153714	30153714	C	T	SNP	TRIM26	ENST00000437089	human	ensembl	74_37	-1	known	missense	c.1559	p.R520Q	0.002	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127				32	0	0	35	8	18.6047
MDC1	0	genome.wustl.edu	37	6	30671952	30671952	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	30671952	30671952	C	T	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.5008	p.V1670I	0.138	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				143	1	0.694444	127	23	15.3333
GTF2H4	0	genome.wustl.edu	37	6	30877746	30877746	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	30877746	30877746	C	T	SNP	GTF2H4	ENST00000259895	human	ensembl	74_37	+1	known	missense	c.280	p.R94W	1.000	pfam_TFIIH_p52/Tfb2,tigrfam_TFIIH_p52/Tfb2	pfam_TFIIH_p52/Tfb2,tigrfam_TFIIH_p52/Tfb2	-	no_errors	GTF2H4	HGNC	ENSG00000213780				129	0	0	129	28	17.8344
BPHL	0	genome.wustl.edu	37	6	3127585	3127585	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	3127585	3127585	C	T	SNP	BPHL	ENST00000380379	human	ensembl	74_37	+1	known	silent	c.321	p.R107	0.825	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1	-	no_errors	BPHL	HGNC	ENSG00000137274				132	0	0	93	21	18.4211
LY6G6F	0	genome.wustl.edu	37	6	31683367	31683367	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	31683367	31683367	G	A	SNP	LY6G6F	ENST00000556581	human	ensembl	74_37	+1	known	silent	c.891	p.Q297	0.001	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LY6G6F	HGNC	ENSG00000204424				73	0	0	52	8	13.3333
VWA7	0	genome.wustl.edu	37	6	31734394	31734394	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	31734394	31734394	G	T	SNP	VWA7	ENST00000375686	human	ensembl	74_37	-1	known	missense	c.2030	p.P677H	0.796	NULL	NULL	-	no_errors	VWA7	HGNC	ENSG00000204396				49	0	0	55	6	9.83607
HSPA1L	0	genome.wustl.edu	37	6	31778622	31778622	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	31778622	31778622	C	T	SNP	HSPA1L	ENST00000375654	human	ensembl	74_37	-1	known	silent	c.1128	p.A376	0.335	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1L	HGNC	ENSG00000204390				73	0	0	79	20	20.202
RNF5	0	genome.wustl.edu	37	6	32146317	32146317	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	32146317	32146317	G	C	SNP	RNF5	ENST00000427134	human	ensembl	74_37	+1	known	missense	c.29	p.G10A	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF5	HGNC	ENSG00000204308				28	0	0	46	4	8
NOTCH4	0	genome.wustl.edu	37	6	32166740	32166740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	32166740	32166740	G	A	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	missense	c.4498	p.R1500C	0.929	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				172	0	0	180	43	19.2825
DAXX	0	genome.wustl.edu	37	6	33288764	33288764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	33288764	33288764	C	T	SNP	DAXX	ENST00000266000	human	ensembl	74_37	-1	known	missense	c.788	p.R263H	1.000	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209				111	0	0	90	26	22.4138
ITPR3	0	genome.wustl.edu	37	6	33652577	33652577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	33652577	33652577	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.5164	p.A1722T	0.835	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				90	0	0	109	29	21.0145
ITPR3	0	genome.wustl.edu	37	6	33656440	33656440	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	33656440	33656440	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	silent	c.6576	p.P2192	0.384	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				25	0	0	23	12	34.2857
ITPR3	0	genome.wustl.edu	37	6	33660616	33660616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	33660616	33660616	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.7570	p.R2524C	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				75	0	0	65	6	8.4507
PPARD	0	genome.wustl.edu	37	6	35389648	35389648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	35389648	35389648	C	T	SNP	PPARD	ENST00000311565	human	ensembl	74_37	+1	known	missense	c.337	p.R113C	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_1Cnucl_rcpt_B,prints_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A	-	no_errors	PPARD	HGNC	ENSG00000112033				59	0	0	72	11	13.253
TEAD3	0	genome.wustl.edu	37	6	35443481	35443481	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	35443481	35443481	G	A	SNP	TEAD3	ENST00000402886	human	ensembl	74_37	-1	novel	silent	c.723	p.A241	0.480	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,pirsf_TEF	-	no_errors	TEAD3	HGNC	ENSG00000007866				87	0	0	90	19	17.4312
CPNE5	0	genome.wustl.edu	37	6	36714354	36714354	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	36714354	36714354	C	A	SNP	CPNE5	ENST00000244751	human	ensembl	74_37	-1	known	missense	c.1019	p.G340V	1.000	smart_VWF_A,pfscan_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE5	HGNC	ENSG00000124772				43	0	0	43	11	20.3704
FAM50B	0	genome.wustl.edu	37	6	3850301	3850301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	3850301	3850301	C	T	SNP	FAM50B	ENST00000380272	human	ensembl	74_37	+1	novel	missense	c.256	p.R86W	0.982	NULL	pfam_XAP5	-	no_errors	FAM50B	HGNC	ENSG00000145945				19	0	0	25	4	13.7931
DAAM2	0	genome.wustl.edu	37	6	39835355	39835355	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	39835355	39835355	C	T	SNP	DAAM2	ENST00000274867	human	ensembl	74_37	+1	known	silent	c.498	p.H166	0.181	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DAAM2	HGNC	ENSG00000146122				109	1	0.909091	124	20	13.8889
GLTSCR1L	0	genome.wustl.edu	37	6	42796577	42796577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	42796577	42796577	C	T	SNP	GLTSCR1L	ENST00000314073	human	ensembl	74_37	+1	known	missense	c.506	p.T169M	1.000	NULL	NULL	-	no_errors	GLTSCR1L	HGNC	ENSG00000112624				174	0	0	134	16	10.6667
PEX6	0	genome.wustl.edu	37	6	42942631	42942631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	42942631	42942631	C	T	SNP	PEX6	ENST00000304611	human	ensembl	74_37	-1	known	missense	c.1028	p.R343Q	0.796	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	PEX6	HGNC	ENSG00000124587				128	0	0	123	24	16.3265
CUL7	0	genome.wustl.edu	37	6	43020028	43020028	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	43020028	43020028	T	C	SNP	CUL7	ENST00000535468	human	ensembl	74_37	-1	known	missense	c.655	p.M219V	1.000	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090				71	0	0	48	14	22.5806
SRF	0	genome.wustl.edu	37	6	43141756	43141756	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	43141756	43141756	G	A	SNP	SRF	ENST00000265354	human	ensembl	74_37	+1	known	missense	c.685	p.D229N	1.000	NULL	pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	SRF	HGNC	ENSG00000112658				67	0	0	61	11	15.2778
RSPH9	0	genome.wustl.edu	37	6	43612854	43612854	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	43612854	43612854	C	A	SNP	RSPH9	ENST00000372165	human	ensembl	74_37	+1	known	missense	c.19	p.L7M	0.419	NULL	NULL	-	no_errors	RSPH9	HGNC	ENSG00000172426				42	0	0	43	17	28.3333
AARS2	0	genome.wustl.edu	37	6	44275066	44275066	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	44275066	44275066	C	T	SNP	AARS2	ENST00000244571	human	ensembl	74_37	-1	known	silent	c.960	p.A320	0.146	pfam_Ala-tRNA-synth_IIc_N,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608				20	0	0	26	5	16.129
CLIC5	0	genome.wustl.edu	37	6	45922893	45922893	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	45922893	45922893	A	G	SNP	CLIC5	ENST00000185206	human	ensembl	74_37	-1	known	missense	c.629	p.V210A	1.000	superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC5	HGNC	ENSG00000112782				55	0	0	53	9	14.5161
BAI3	0	genome.wustl.edu	37	6	69349254	69349254	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	69349254	69349254	C	A	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	nonsense	c.687	p.C229*	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				52	0	0	34	6	15
RREB1	0	genome.wustl.edu	37	6	7230882	7230882	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	7230882	7230882	C	T	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	silent	c.2550	p.C850	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				21	0	0	28	5	15.1515
MYO6	0	genome.wustl.edu	37	6	76599952	76599952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	76599952	76599952	G	A	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	missense	c.2837	p.R946H	0.459	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				64	0	0	41	8	16.3265
HTR1B	0	genome.wustl.edu	37	6	78172950	78172950	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	78172950	78172950	C	T	SNP	HTR1B	ENST00000369947	human	ensembl	74_37	-1	known	silent	c.171	p.A57	0.995	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_ADR_fam	-	no_errors	HTR1B	HGNC	ENSG00000135312				198	0	0	169	32	15.9204
IBTK	0	genome.wustl.edu	37	6	82933168	82933168	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	82933168	82933168	C	T	SNP	IBTK	ENST00000306270	human	ensembl	74_37	-1	known	silent	c.1113	p.K371	1.000	NULL	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700				43	0	0	44	9	16.9811
C6orf165	0	genome.wustl.edu	37	6	88126423	88126423	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	88126423	88126423	G	C	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	missense	c.509	p.G170A	0.784	NULL	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				34	0	0	30	4	11.7647
MDN1	0	genome.wustl.edu	37	6	90428228	90428228	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	90428228	90428228	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	nonsense	c.6440	p.W2147*	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				88	0	0	71	17	19.3182
MDN1	0	genome.wustl.edu	37	6	90428637	90428637	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	90428637	90428637	T	G	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.6170	p.Q2057P	1.000	superfamily_P-loop_NTPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				78	0	0	78	17	17.8947
MDN1	0	genome.wustl.edu	37	6	90453398	90453398	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	90453398	90453398	G	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.4214	p.A1405V	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				113	0	0	85	14	14.1414
NYAP1	0	genome.wustl.edu	37	7	100086950	100086950	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	100086950	100086950	A	C	SNP	NYAP1	ENST00000423930	human	ensembl	74_37	+1	known	missense	c.1606	p.S536R	1.000	NULL	NULL	-	no_errors	NYAP1	HGNC	ENSG00000166924				27	0	0	24	9	27.2727
MUC17	0	genome.wustl.edu	37	7	100687017	100687017	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	100687017	100687017	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.12320	p.T4107M	0.022	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				114	0	0	100	18	15.2542
CUX1	0	genome.wustl.edu	37	7	101926330	101926330	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	101926330	101926330	A	G	SNP	CUX1	ENST00000292538	human	ensembl	74_37	+1	known	missense	c.1985	p.H662R	1.000	NULL	pfam_CASP_C,superfamily_LemA-like_dom	-	no_errors	CUX1	HGNC	ENSG00000257923				41	0	0	55	5	8.33333
POLR2J	0	genome.wustl.edu	37	7	102114856	102114856	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	102114856	102114856	G	A	SNP	POLR2J	ENST00000393794	human	ensembl	74_37	-1	known	silent	c.270	p.A90	1.000	pfam_RBP11-like_dimer,superfamily_RBP11-like_dimer	pfam_RBP11-like_dimer,superfamily_RBP11-like_dimer	-	no_errors	POLR2J	HGNC	ENSG00000005075				151	0	0	150	25	14.2857
RELN	0	genome.wustl.edu	37	7	103130255	103130255	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	103130255	103130255	T	C	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.9697	p.K3233E	1.000	pfam_EGF_extracell,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				37	0	0	49	4	7.54717
PRKAR2B	0	genome.wustl.edu	37	7	106797730	106797730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	106797730	106797730	G	A	SNP	PRKAR2B	ENST00000265717	human	ensembl	74_37	+1	known	missense	c.1084	p.A362T	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2B	HGNC	ENSG00000005249				35	0	0	29	9	23.6842
SLC26A4	0	genome.wustl.edu	37	7	107303783	107303783	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	107303783	107303783	G	A	SNP	SLC26A4	ENST00000265715	human	ensembl	74_37	+1	known	silent	c.207	p.V69	0.995	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137				94	0	0	66	14	17.5
LAMB4	0	genome.wustl.edu	37	7	107703425	107703425	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	107703425	107703425	C	T	SNP	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	missense	c.3076	p.A1026T	0.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				36	0	0	35	7	16.6667
LAMB4	0	genome.wustl.edu	37	7	107706317	107706317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	107706317	107706317	C	T	SNP	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	missense	c.2726	p.R909H	0.145	pfam_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				119	0	0	82	16	16.3265
LRRN3	0	genome.wustl.edu	37	7	110763995	110763995	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	110763995	110763995	G	A	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	missense	c.1167	p.M389I	1.000	smart_Cys-rich_flank_reg_C	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				61	0	0	53	9	14.5161
C7orf60	0	genome.wustl.edu	37	7	112462157	112462157	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	112462157	112462157	G	A	SNP	C7orf60	ENST00000297145	human	ensembl	74_37	-1	known	missense	c.860	p.A287V	1.000	pfam_DUF3321	pfam_DUF3321	-	no_errors	C7orf60	HGNC	ENSG00000164603				84	0	0	54	17	23.9437
PPP1R3A	0	genome.wustl.edu	37	7	113519374	113519374	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	113519374	113519374	C	T	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	nonsense	c.1773	p.W591*	0.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				130	0	0	99	13	11.6071
THSD7A	0	genome.wustl.edu	37	7	11675888	11675888	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	11675888	11675888	G	A	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	silent	c.891	p.R297	0.619	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				96	0	0	99	12	10.8108
GRM8	0	genome.wustl.edu	37	7	126544078	126544078	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	126544078	126544078	C	A	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	missense	c.966	p.E322D	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603				117	0	0	97	25	20.4918
FAM71F1	0	genome.wustl.edu	37	7	128359092	128359092	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	128359092	128359092	C	G	SNP	FAM71F1	ENST00000315184	human	ensembl	74_37	+1	known	missense	c.642	p.H214Q	1.000	NULL	pfam_DUF3699	-	no_errors	FAM71F1	HGNC	ENSG00000135248				124	0	0	107	16	13.0081
FAM71F1	0	genome.wustl.edu	37	7	128370103	128370103	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	128370103	128370103	C	A	SNP	FAM71F1	ENST00000315184	human	ensembl	74_37	+1	known	missense	c.1001	p.P334Q	0.958	NULL	pfam_DUF3699	-	no_errors	FAM71F1	HGNC	ENSG00000135248				119	0	0	141	20	12.4224
NRF1	0	genome.wustl.edu	37	7	129317486	129317486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	129317486	129317486	C	T	SNP	NRF1	ENST00000393231	human	ensembl	74_37	+1	known	missense	c.353	p.T118M	1.000	pfam_Nrf1_NLS/DNA-bd_dimer	pfam_Nrf1_NLS/DNA-bd_dimer,pfam_Nrf1_activation-bd	-	no_errors	NRF1	HGNC	ENSG00000106459				91	0	0	76	14	15.5556
AKR1B1	0	genome.wustl.edu	37	7	134135550	134135550	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	134135550	134135550	C	T	SNP	AKR1B1	ENST00000285930	human	ensembl	74_37	-1	known	silent	c.339	p.P113	0.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B1	HGNC	ENSG00000085662				39	0	0	52	11	17.4603
CHRM2	0	genome.wustl.edu	37	7	136700458	136700458	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	136700458	136700458	C	T	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	silent	c.846	p.S282	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072				66	0	0	45	10	18.1818
KIAA1549	0	genome.wustl.edu	37	7	138603675	138603675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	138603675	138603675	G	A	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.697	p.R233W	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				130	0	0	119	27	18.4932
DENND2A	0	genome.wustl.edu	37	7	140301723	140301723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	140301723	140301723	C	T	SNP	DENND2A	ENST00000275884	human	ensembl	74_37	-1	known	missense	c.475	p.V159M	0.999	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966				115	0	0	112	27	19.4245
EPHA1	0	genome.wustl.edu	37	7	143096874	143096874	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	143096874	143096874	C	T	SNP	EPHA1	ENST00000275815	human	ensembl	74_37	-1	known	silent	c.705	p.A235	0.040	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904				27	0	0	23	6	20.6897
CNTNAP2	0	genome.wustl.edu	37	7	147675027	147675027	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	147675027	147675027	C	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.2329	p.R777C	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				57	0	0	58	9	13.4328
CUL1	0	genome.wustl.edu	37	7	148454198	148454198	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	148454198	148454198	C	T	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.439	p.R147C	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				92	0	0	45	11	19.6429
KMT2C	0	genome.wustl.edu	37	7	151960144	151960144	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	151960144	151960144	T	C	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.1256	p.Q419R	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				91	0	0	59	10	14.4928
ITGB8	0	genome.wustl.edu	37	7	20449534	20449534	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	20449534	20449534	G	A	SNP	ITGB8	ENST00000222573	human	ensembl	74_37	+1	known	missense	c.2224	p.V742I	1.000	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855				77	0	0	58	10	14.7059
ELMO1	0	genome.wustl.edu	37	7	36910077	36910077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	36910077	36910077	G	A	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.1826	p.P609L	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				63	0	0	49	8	14.0351
ELMO1	0	genome.wustl.edu	37	7	37136283	37136283	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	37136283	37136283	C	T	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.1241	p.G414D	1.000	pfam_Engulfment_cell_motility_ELMO	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				70	0	0	56	5	8.19672
SDK1	0	genome.wustl.edu	37	7	4051851	4051851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	4051851	4051851	C	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.2404	p.R802C	0.075	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				154	0	0	120	26	17.8082
C7orf10	0	genome.wustl.edu	37	7	40900113	40900113	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	40900113	40900113	C	T	SNP	C7orf10	ENST00000464028	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C7orf10	HGNC	ENSG00000175600				27	0	0	24	8	25
GLI3	0	genome.wustl.edu	37	7	42005555	42005555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	42005555	42005555	G	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.3116	p.A1039V	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				28	0	0	64	8	11.1111
SDK1	0	genome.wustl.edu	37	7	4285315	4285315	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	4285315	4285315	C	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.6259	p.P2087S	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				54	0	0	45	6	11.7647
PSMA2	0	genome.wustl.edu	37	7	42957428	42957428	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	42957428	42957428	A	G	SNP	PSMA2	ENST00000223321	human	ensembl	74_37	-1	known	silent	c.537	p.N179	0.999	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA2	HGNC	ENSG00000106588				61	0	0	31	10	24.3902
ADCY1	0	genome.wustl.edu	37	7	45699644	45699644	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	45699644	45699644	G	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	missense	c.1311	p.K437N	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				73	0	0	54	12	18.1818
IKZF1	0	genome.wustl.edu	37	7	50468038	50468038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	50468038	50468038	G	A	SNP	IKZF1	ENST00000331340	human	ensembl	74_37	+1	known	missense	c.1273	p.G425R	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF1	HGNC	ENSG00000185811				35	0	0	63	6	8.69565
TNRC18	0	genome.wustl.edu	37	7	5427330	5427330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	5427330	5427330	G	A	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	missense	c.2125	p.R709C	0.991	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				102	0	0	122	7	5.42636
LINC00174	0	genome.wustl.edu	37	7	65842408	65842408	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	65842408	65842408	C	T	SNP	LINC00174	ENST00000421767	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	LINC00174	HGNC	ENSG00000179406				10	0	0	6	4	40
WBSCR17	0	genome.wustl.edu	37	7	70853304	70853304	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	70853304	70853304	T	C	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.506	p.L169P	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				69	0	0	61	15	19.7368
POM121	0	genome.wustl.edu	37	7	72416706	72416706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	72416706	72416706	C	T	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	missense	c.3683	p.A1228V	0.980	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313				74	0	0	56	7	11.1111
BAZ1B	0	genome.wustl.edu	37	7	72892375	72892375	+	Silent	SNP	A	A	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	72892375	72892375	A	T	SNP	BAZ1B	ENST00000339594	human	ensembl	74_37	-1	known	silent	c.1416	p.P472	0.985	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954				82	0	0	72	10	12.1951
ELN	0	genome.wustl.edu	37	7	73462021	73462021	+	Silent	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	73462021	73462021	C	A	SNP	ELN	ENST00000358929	human	ensembl	74_37	+1	known	silent	c.660	p.P220	1.000	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540				113	0	0	80	16	16.6667
GTF2I	0	genome.wustl.edu	37	7	74129222	74129222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	74129222	74129222	C	T	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	+1	known	missense	c.809	p.S270L	1.000	pirsf_TF_II-I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2I	HGNC	ENSG00000077809				115	0	0	84	12	12.5
HIP1	0	genome.wustl.edu	37	7	75203108	75203108	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	75203108	75203108	G	A	SNP	HIP1	ENST00000336926	human	ensembl	74_37	-1	known	missense	c.703	p.L235F	1.000	pfam_ANTH_dom,superfamily_ARM-type_fold	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1	HGNC	ENSG00000127946				68	0	0	60	10	14.2857
ENSG00000228829	0	genome.wustl.edu	37	7	75804881	75804881	+	RNA	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	75804881	75804881	G	A	SNP	ENSG00000228829	ENST00000437494	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.050	-	-	-	no_errors	AC005077.5	Clone_based_vega_gene	ENSG00000228829				40	0	0	32	8	20
MIR489	0	genome.wustl.edu	37	7	93113314	93113314	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	93113314	93113314	C	T	SNP	MIR489	ENST00000384923	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR489	HGNC	ENSG00000207656				70	0	0	49	16	24.6154
LMTK2	0	genome.wustl.edu	37	7	97822238	97822238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	97822238	97822238	G	A	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	missense	c.2461	p.E821K	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715				146	0	0	112	32	22.2222
TRRAP	0	genome.wustl.edu	37	7	98559064	98559064	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	98559064	98559064	T	C	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.6649	p.S2217P	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				98	0	0	87	16	15.534
STAG3	0	genome.wustl.edu	37	7	99796140	99796140	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	99796140	99796140	C	T	SNP	STAG3	ENST00000317296	human	ensembl	74_37	+1	known	silent	c.1287	p.V429	0.996	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923				92	0	0	103	6	5.50459
VPS13B	0	genome.wustl.edu	37	8	100148975	100148975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	100148975	100148975	G	A	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.1646	p.G549D	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				118	0	0	96	13	11.9266
NCALD	0	genome.wustl.edu	37	8	102731539	102731539	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	102731539	102731539	T	C	SNP	NCALD	ENST00000311028	human	ensembl	74_37	-1	known	missense	c.319	p.M107V	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	NCALD	HGNC	ENSG00000104490				142	0	0	148	29	16.3842
ODF1	0	genome.wustl.edu	37	8	103564043	103564043	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	103564043	103564043	G	A	SNP	ODF1	ENST00000285402	human	ensembl	74_37	+1	known	missense	c.88	p.E30K	0.979	NULL	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom	-	no_errors	ODF1	HGNC	ENSG00000155087				148	1	0.671141	165	33	16.6667
RIMS2	0	genome.wustl.edu	37	8	105235928	105235928	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	105235928	105235928	C	A	SNP	RIMS2	ENST00000339750	human	ensembl	74_37	+1	known	missense	c.49	p.Q17K	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RIMS2	HGNC	ENSG00000176406				17	0	0	29	8	21.6216
LRP12	0	genome.wustl.edu	37	8	105601048	105601048	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	105601048	105601048	G	A	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	silent	c.78	p.Y26	1.000	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				13	0	0	30	5	14.2857
SOX7	0	genome.wustl.edu	37	8	10584161	10584161	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	10584161	10584161	G	A	SNP	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	missense	c.410	p.A137V	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,pfscan_HMG_box_dom	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056				30	0	0	48	9	15.7895
TMEM74	0	genome.wustl.edu	37	8	109796921	109796921	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	109796921	109796921	G	T	SNP	TMEM74	ENST00000297459	human	ensembl	74_37	-1	known	missense	c.407	p.P136H	0.002	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841				72	0	0	89	14	13.5922
PKHD1L1	0	genome.wustl.edu	37	8	110439310	110439310	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	110439310	110439310	A	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	silent	c.2925	p.T975	0.583	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				53	0	0	82	23	21.9048
PKHD1L1	0	genome.wustl.edu	37	8	110477120	110477120	+	Silent	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	110477120	110477120	A	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	silent	c.8059	p.R2687	1.000	smart_PbH1	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				86	0	0	77	21	21.4286
EXT1	0	genome.wustl.edu	37	8	118830694	118830694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	118830694	118830694	C	T	SNP	EXT1	ENST00000378204	human	ensembl	74_37	-1	known	missense	c.1612	p.V538I	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197				129	0	0	167	32	16.0804
TRMT12	0	genome.wustl.edu	37	8	125464402	125464402	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	125464402	125464402	G	A	SNP	TRMT12	ENST00000328599	human	ensembl	74_37	+1	known	missense	c.1234	p.G412R	0.981	NULL	pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TRMT12	HGNC	ENSG00000183665				48	0	0	47	9	16.0714
POU5F1B	0	genome.wustl.edu	37	8	128429156	128429156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	128429156	128429156	G	A	SNP	POU5F1B	ENST00000391675	human	ensembl	74_37	+1	known	missense	c.1045	p.V349I	0.214	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU5F1B	HGNC	ENSG00000212993				16	0	0	14	7	33.3333
GSDMC	0	genome.wustl.edu	37	8	130764944	130764944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	130764944	130764944	C	T	SNP	GSDMC	ENST00000276708	human	ensembl	74_37	-1	known	missense	c.844	p.E282K	0.009	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697				43	0	0	46	7	13.2075
ST3GAL1	0	genome.wustl.edu	37	8	134472060	134472060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	134472060	134472060	C	T	SNP	ST3GAL1	ENST00000319914	human	ensembl	74_37	-1	known	missense	c.970	p.V324M	0.754	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL1	HGNC	ENSG00000008513				154	0	0	174	25	12.5628
ST3GAL1	0	genome.wustl.edu	37	8	134472082	134472082	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	134472082	134472082	G	A	SNP	ST3GAL1	ENST00000319914	human	ensembl	74_37	-1	known	silent	c.948	p.H316	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL1	HGNC	ENSG00000008513				168	0	0	192	26	11.9266
FAM135B	0	genome.wustl.edu	37	8	139164495	139164495	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	139164495	139164495	G	A	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	silent	c.2223	p.S741	0.227	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				37	0	0	45	5	10
SLC45A4	0	genome.wustl.edu	37	8	142228396	142228396	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	142228396	142228396	A	G	SNP	SLC45A4	ENST00000517878	human	ensembl	74_37	-1	known	missense	c.1343	p.L448P	0.985	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567				53	0	0	102	16	13.5593
TSNARE1	0	genome.wustl.edu	37	8	143412317	143412317	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	143412317	143412317	G	A	SNP	TSNARE1	ENST00000307180	human	ensembl	74_37	-1	known	missense	c.838	p.R280W	0.630	superfamily_t-SNARE,smart_Syntaxin_N	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045				35	0	0	55	8	12.6984
ZNF623	0	genome.wustl.edu	37	8	144732141	144732141	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	144732141	144732141	G	A	SNP	ZNF623	ENST00000501748	human	ensembl	74_37	+1	known	silent	c.99	p.T33	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF623	HGNC	ENSG00000183309				84	0	0	68	14	17.0732
EPPK1	0	genome.wustl.edu	37	8	144942153	144942153	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	144942153	144942153	G	A	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.5269	p.L1757	0.257	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				73	0	0	92	16	14.8148
PLEC	0	genome.wustl.edu	37	8	144993942	144993942	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	144993942	144993942	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.10458	p.T3486	0.134	smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				70	0	0	84	13	13.4021
PLEC	0	genome.wustl.edu	37	8	144994298	144994298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	144994298	144994298	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.10102	p.R3368C	0.233	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				69	0	0	108	17	13.6
SLC39A4	0	genome.wustl.edu	37	8	145637935	145637935	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	145637935	145637935	T	C	SNP	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	missense	c.1931	p.D644G	0.002	NULL	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804				185	0	0	189	32	14.4796
ARHGAP39	0	genome.wustl.edu	37	8	145763109	145763109	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	145763109	145763109	C	T	SNP	ARHGAP39	ENST00000377307	human	ensembl	74_37	-1	known	silent	c.2610	p.P870	0.988	pfscan_MyTH4_dom	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_dom,smart_WW_dom,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799				79	0	0	110	18	14.0625
TUSC3	0	genome.wustl.edu	37	8	15480617	15480617	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	15480617	15480617	T	C	SNP	TUSC3	ENST00000503731	human	ensembl	74_37	+1	known	missense	c.167	p.L56P	1.000	superfamily_Thioredoxin-like_fold	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723				54	0	0	50	13	20.6349
SLC7A2	0	genome.wustl.edu	37	8	17401103	17401103	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	17401103	17401103	C	T	SNP	SLC7A2	ENST00000004531	human	ensembl	74_37	+1	known	silent	c.375	p.C125	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989				77	0	0	73	13	15.1163
XPO7	0	genome.wustl.edu	37	8	21827021	21827021	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	21827021	21827021	A	G	SNP	XPO7	ENST00000434536	human	ensembl	74_37	+1	known	missense	c.193	p.T65A	1.000	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227				29	0	0	32	4	11.1111
FGF17	0	genome.wustl.edu	37	8	21905676	21905676	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	21905676	21905676	C	T	SNP	FGF17	ENST00000359441	human	ensembl	74_37	+1	known	silent	c.567	p.A189	0.049	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF17	HGNC	ENSG00000158815				27	0	0	45	8	15.0943
NUDT18	0	genome.wustl.edu	37	8	21965188	21965188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	21965188	21965188	C	T	SNP	NUDT18	ENST00000309188	human	ensembl	74_37	-1	known	missense	c.595	p.A199T	0.021	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase	-	no_errors	NUDT18	HGNC	ENSG00000173566				44	0	0	69	14	16.8675
SLC39A14	0	genome.wustl.edu	37	8	22273425	22273425	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	22273425	22273425	G	A	SNP	SLC39A14	ENST00000359741	human	ensembl	74_37	+1	known	silent	c.894	p.A298	0.013	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A14	HGNC	ENSG00000104635				130	0	0	156	23	12.8492
ADRA1A	0	genome.wustl.edu	37	8	26721669	26721669	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	26721669	26721669	G	A	SNP	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	missense	c.818	p.T273M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907				32	0	0	54	9	14.2857
PTK2B	0	genome.wustl.edu	37	8	27293788	27293788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	27293788	27293788	C	T	SNP	PTK2B	ENST00000346049	human	ensembl	74_37	+1	known	missense	c.1264	p.R422C	0.992	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899				163	0	0	170	34	16.6667
NRG1	0	genome.wustl.edu	37	8	32621514	32621514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	32621514	32621514	C	T	SNP	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	missense	c.1541	p.A514V	0.038	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				64	0	0	79	14	15.0538
UNC5D	0	genome.wustl.edu	37	8	35647984	35647984	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	35647984	35647984	T	G	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.2765	p.L922R	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				79	0	0	73	18	19.7802
CHRNB3	0	genome.wustl.edu	37	8	42565570	42565570	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	42565570	42565570	T	C	SNP	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	missense	c.242	p.L81P	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432				42	0	0	36	5	12.1951
PRKDC	0	genome.wustl.edu	37	8	48772214	48772214	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	48772214	48772214	G	T	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.6162	p.S2054R	0.997	pfam_NUC194,superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				140	0	0	167	22	11.6402
RGS20	0	genome.wustl.edu	37	8	54791937	54791937	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	54791937	54791937	C	T	SNP	RGS20	ENST00000297313	human	ensembl	74_37	+1	known	silent	c.285	p.P95	0.000	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS20	HGNC	ENSG00000147509				130	0	0	143	42	22.7027
TRIM55	0	genome.wustl.edu	37	8	67039509	67039509	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	67039509	67039509	C	T	SNP	TRIM55	ENST00000315962	human	ensembl	74_37	+1	known	silent	c.6	p.S2	0.913	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573				70	0	0	81	10	10.989
CSPP1	0	genome.wustl.edu	37	8	68105705	68105705	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	68105705	68105705	A	G	SNP	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	missense	c.3322	p.S1108G	0.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				66	0	0	55	12	17.9104
PREX2	0	genome.wustl.edu	37	8	68864748	68864748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	68864748	68864748	G	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.119	p.G40D	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				23	0	0	31	6	16.2162
PREX2	0	genome.wustl.edu	37	8	68972999	68972999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	68972999	68972999	G	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.1324	p.G442R	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				61	0	0	54	23	29.8701
SULF1	0	genome.wustl.edu	37	8	70533371	70533371	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	70533371	70533371	C	T	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	silent	c.1479	p.Y493	0.998	superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				68	0	0	84	16	16
NCOA2	0	genome.wustl.edu	37	8	71036947	71036947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	71036947	71036947	G	A	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.4070	p.A1357V	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				50	0	0	54	7	11.4754
ZFHX4	0	genome.wustl.edu	37	8	77618450	77618450	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	77618450	77618450	T	C	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	silent	c.2127	p.T709	1.000	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				40	0	0	44	4	8.33333
ZFHX4	0	genome.wustl.edu	37	8	77767199	77767199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	77767199	77767199	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.8042	p.R2681Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				60	0	0	99	6	5.71429
FAM86B3P	0	genome.wustl.edu	37	8	8098832	8098832	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	8098832	8098832	C	T	SNP	FAM86B3P	ENST00000310542	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.105	-	-	-	no_errors	FAM86B3P	HGNC	ENSG00000173295				22	0	0	29	8	21.6216
TNKS	0	genome.wustl.edu	37	8	9564436	9564436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	9564436	9564436	C	T	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	missense	c.1385	p.T462I	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				28	0	0	46	6	11.5385
ESRP1	0	genome.wustl.edu	37	8	95690487	95690487	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	95690487	95690487	G	A	SNP	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	missense	c.1708	p.A570T	1.000	NULL	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				53	0	0	51	7	12.069
PLEKHF2	0	genome.wustl.edu	37	8	96166659	96166659	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	96166659	96166659	T	G	SNP	PLEKHF2	ENST00000315367	human	ensembl	74_37	+1	known	missense	c.387	p.C129W	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_Znf_FYVE_PHD,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel	-	no_errors	PLEKHF2	HGNC	ENSG00000175895				119	0	0	93	25	21.1864
GDF6	0	genome.wustl.edu	37	8	97157634	97157634	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	97157634	97157634	C	T	SNP	GDF6	ENST00000287020	human	ensembl	74_37	-1	known	silent	c.525	p.A175	0.481	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466				10	0	0	9	3	25
TSPYL5	0	genome.wustl.edu	37	8	98289667	98289667	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	98289667	98289667	G	T	SNP	TSPYL5	ENST00000322128	human	ensembl	74_37	-1	known	missense	c.406	p.P136T	0.059	NULL	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543				62	0	0	73	15	17.0455
GALNT12	0	genome.wustl.edu	37	9	101602364	101602364	+	Silent	SNP	T	T	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	101602364	101602364	T	G	SNP	GALNT12	ENST00000375011	human	ensembl	74_37	+1	known	silent	c.1293	p.T431	0.963	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT12	HGNC	ENSG00000119514				145	0	0	124	22	15.0685
COL15A1	0	genome.wustl.edu	37	9	101810227	101810227	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	101810227	101810227	G	A	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	missense	c.2738	p.R913H	1.000	pfam_Collagen,superfamily_C-type_lectin_fold	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				29	0	0	31	10	24.3902
PPP3R2	0	genome.wustl.edu	37	9	104357179	104357179	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	104357179	104357179	C	T	SNP	PPP3R2	ENST00000374806	human	ensembl	74_37	-1	known	missense	c.34	p.A12T	0.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	PPP3R2	HGNC	ENSG00000188386				95	0	0	94	18	16.0714
KLF4	0	genome.wustl.edu	37	9	110250239	110250239	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	110250239	110250239	A	C	SNP	KLF4	ENST00000374672	human	ensembl	74_37	-1	known	missense	c.436	p.S146A	0.871	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF4	HGNC	ENSG00000136826				8	0	0	4	3	42.8571
ACTL7B	0	genome.wustl.edu	37	9	111617074	111617074	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	111617074	111617074	G	A	SNP	ACTL7B	ENST00000374667	human	ensembl	74_37	-1	known	silent	c.1137	p.S379	0.360	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7B	HGNC	ENSG00000148156				77	0	0	92	21	18.5841
IKBKAP	0	genome.wustl.edu	37	9	111656285	111656285	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	111656285	111656285	C	A	SNP	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	missense	c.2798	p.R933L	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061				40	0	0	19	3	13.6364
CTNNAL1	0	genome.wustl.edu	37	9	111705293	111705293	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	111705293	111705293	A	G	SNP	CTNNAL1	ENST00000325551	human	ensembl	74_37	-1	known	missense	c.2087	p.M696T	1.000	superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	-	no_errors	CTNNAL1	HGNC	ENSG00000119326				36	0	0	21	5	19.2308
PTPN3	0	genome.wustl.edu	37	9	112199206	112199206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	112199206	112199206	G	A	SNP	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	missense	c.632	p.A211V	0.994	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Band_41_fam,pfscan_FERM_domain	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159				66	0	0	36	6	14.2857
KIAA1958	0	genome.wustl.edu	37	9	115421571	115421571	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	115421571	115421571	T	A	SNP	KIAA1958	ENST00000536272	human	ensembl	74_37	+1	known	missense	c.1457	p.L486H	0.987	NULL	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185				89	0	0	102	19	15.7025
CDC26	0	genome.wustl.edu	37	9	116029574	116029574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	116029574	116029574	C	T	SNP	CDC26	ENST00000374206	human	ensembl	74_37	-1	known	missense	c.227	p.R76H	0.998	pfam_APC_suCDC26	pfam_APC_suCDC26	-	no_errors	CDC26	HGNC	ENSG00000176386				57	0	0	42	10	19.2308
AKNA	0	genome.wustl.edu	37	9	117124787	117124787	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	117124787	117124787	G	A	SNP	AKNA	ENST00000307564	human	ensembl	74_37	-1	known	silent	c.1815	p.H605	0.414	pfam_TF_AT-hook	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948				24	0	0	15	5	25
TNC	0	genome.wustl.edu	37	9	117808794	117808794	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	117808794	117808794	T	C	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.5020	p.T1674A	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				150	0	0	127	36	22.0859
ASTN2	0	genome.wustl.edu	37	9	119739005	119739005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	119739005	119739005	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.1651	p.R551C	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				72	0	0	67	9	11.8421
CDK5RAP2	0	genome.wustl.edu	37	9	123292371	123292371	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	123292371	123292371	A	G	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.710	p.I237T	1.000	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				103	0	0	82	12	12.766
MVB12B	0	genome.wustl.edu	37	9	129157978	129157978	+	Splice_Site	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	129157978	129157978	T	C	SNP	MVB12B	ENST00000361171	human	ensembl	74_37	+1	known	splice_site	c.662+2	e6+2	1.000	-	-	-	no_errors	MVB12B	HGNC	ENSG00000196814				113	0	0	108	21	16.2791
SLC2A8	0	genome.wustl.edu	37	9	130165962	130165962	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	130165962	130165962	G	A	SNP	SLC2A8	ENST00000373371	human	ensembl	74_37	+1	known	silent	c.747	p.R249	0.962	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A8	HGNC	ENSG00000136856				58	0	0	62	13	17.3333
SLC25A25	0	genome.wustl.edu	37	9	130869723	130869723	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	130869723	130869723	A	G	SNP	SLC25A25	ENST00000373069	human	ensembl	74_37	+1	known	nonstop	c.1548	p.*516W	1.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Graves_DC	-	no_errors	SLC25A25	HGNC	ENSG00000148339				117	1	0.847458	120	27	18.3673
SLC27A4	0	genome.wustl.edu	37	9	131122642	131122642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	131122642	131122642	C	T	SNP	SLC27A4	ENST00000300456	human	ensembl	74_37	+1	known	missense	c.1804	p.R602W	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A4	HGNC	ENSG00000167114				132	0	0	106	24	18.4615
SET	0	genome.wustl.edu	37	9	131454979	131454979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	131454979	131454979	C	T	SNP	SET	ENST00000372692	human	ensembl	74_37	+1	known	missense	c.352	p.H118Y	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	SET	HGNC	ENSG00000119335				62	0	0	48	9	15.7895
LAMC3	0	genome.wustl.edu	37	9	133914404	133914404	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	133914404	133914404	G	A	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	missense	c.1130	p.R377Q	0.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				55	0	0	43	15	25.8621
TTF1	0	genome.wustl.edu	37	9	135271838	135271838	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	135271838	135271838	A	G	SNP	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	missense	c.1838	p.V613A	0.993	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				42	0	0	32	10	23.8095
DDX31	0	genome.wustl.edu	37	9	135493777	135493777	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	135493777	135493777	G	A	SNP	DDX31	ENST00000372159	human	ensembl	74_37	-1	known	nonsense	c.2080	p.Q694*	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX31	HGNC	ENSG00000125485				97	0	0	98	14	12.5
RALGDS	0	genome.wustl.edu	37	9	135984212	135984212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	135984212	135984212	G	A	SNP	RALGDS	ENST00000542690	human	ensembl	74_37	-1	known	missense	c.839	p.S280L	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RALGDS	HGNC	ENSG00000160271				24	0	0	29	2	6.45161
ABCA2	0	genome.wustl.edu	37	9	139903448	139903448	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	139903448	139903448	G	A	SNP	ABCA2	ENST00000265662	human	ensembl	74_37	-1	known	silent	c.6885	p.D2295	0.994	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331				40	0	0	40	10	20
TPRN	0	genome.wustl.edu	37	9	140087050	140087050	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	140087050	140087050	C	G	SNP	TPRN	ENST00000409012	human	ensembl	74_37	-1	known	missense	c.1819	p.E607Q	0.014	NULL	NULL	-	no_errors	TPRN	HGNC	ENSG00000176058				44	0	0	24	11	31.4286
TPRN	0	genome.wustl.edu	37	9	140093702	140093702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	140093702	140093702	C	T	SNP	TPRN	ENST00000409012	human	ensembl	74_37	-1	known	missense	c.1462	p.G488R	0.001	NULL	NULL	-	no_errors	TPRN	HGNC	ENSG00000176058				63	0	0	60	9	13.0435
EHMT1	0	genome.wustl.edu	37	9	140669655	140669655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	140669655	140669655	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	missense	c.1742	p.R581H	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				53	0	0	59	11	15.7143
CBWD1	0	genome.wustl.edu	37	9	164038	164038	+	Splice_Site	SNP	C	C	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	164038	164038	C	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	splice_site	c.431-1	e5-1	1.000	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785				168	0	0	145	10	6.45161
BNC2	0	genome.wustl.edu	37	9	16419583	16419583	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	16419583	16419583	C	A	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.2704	p.D902Y	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				106	0	0	102	17	14.2857
ACER2	0	genome.wustl.edu	37	9	19446317	19446317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	19446317	19446317	C	T	SNP	ACER2	ENST00000340967	human	ensembl	74_37	+1	known	missense	c.542	p.S181L	1.000	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER2	HGNC	ENSG00000177076				136	0	0	140	30	17.6471
PRSS3	0	genome.wustl.edu	37	9	33799074	33799074	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	33799074	33799074	G	T	SNP	PRSS3	ENST00000361005	human	ensembl	74_37	+1	known	missense	c.811	p.V271F	0.998	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS3	HGNC	ENSG00000010438				115	0	0	115	20	14.8148
KIAA1161	0	genome.wustl.edu	37	9	34371332	34371332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	34371332	34371332	G	A	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	missense	c.1508	p.A503V	0.990	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976				26	0	0	35	9	20.4545
KIAA1045	0	genome.wustl.edu	37	9	34971465	34971465	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	34971465	34971465	A	G	SNP	KIAA1045	ENST00000242315	human	ensembl	74_37	+1	known	missense	c.170	p.E57G	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	KIAA1045	HGNC	ENSG00000122733				75	0	0	121	10	7.63359
FANCG	0	genome.wustl.edu	37	9	35079503	35079503	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	35079503	35079503	A	C	SNP	FANCG	ENST00000378643	human	ensembl	74_37	-1	known	missense	c.19	p.S7A	0.000	NULL	superfamily_Sig_transdc_His_kin_Hpt_dom,smart_TPR_repeat	-	no_errors	FANCG	HGNC	ENSG00000221829				78	0	0	92	25	21.3675
OR13J1	0	genome.wustl.edu	37	9	35869820	35869820	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	35869820	35869820	C	T	SNP	OR13J1	ENST00000377981	human	ensembl	74_37	-1	known	silent	c.579	p.S193	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828				52	0	0	61	10	14.0845
CNTNAP3	0	genome.wustl.edu	37	9	39171366	39171366	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	39171366	39171366	C	A	SNP	CNTNAP3	ENST00000297668	human	ensembl	74_37	-1	known	missense	c.1333	p.G445C	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714				178	0	0	120	30	20
PGM5	0	genome.wustl.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	70993145	70993145	A	G	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.292	p.I98V	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				82	0	0	67	8	10.6667
ALDH1A1	0	genome.wustl.edu	37	9	75545879	75545879	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	75545879	75545879	C	T	SNP	ALDH1A1	ENST00000297785	human	ensembl	74_37	-1	known	silent	c.228	p.P76	0.961	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A1	HGNC	ENSG00000165092				68	0	0	73	11	13.0952
NMRK1	0	genome.wustl.edu	37	9	77697922	77697922	+	RNA	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	77697922	77697922	C	T	SNP	NMRK1	ENST00000466137	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	NMRK1	HGNC	ENSG00000106733				22	0	0	12	3	20
PCSK5	0	genome.wustl.edu	37	9	78686670	78686670	+	Silent	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	78686670	78686670	G	T	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	silent	c.750	p.T250	0.006	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				150	0	0	145	29	16.6667
SPATA31D5P	0	genome.wustl.edu	37	9	84530387	84530387	+	RNA	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	84530387	84530387	C	A	SNP	SPATA31D5P	ENST00000527857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	SPATA31D5P	HGNC	ENSG00000240632				17	0	0	33	8	19.5122
UBQLN1	0	genome.wustl.edu	37	9	86292653	86292653	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	86292653	86292653	G	T	SNP	UBQLN1	ENST00000376395	human	ensembl	74_37	-1	known	missense	c.1094	p.P365H	1.000	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN1	HGNC	ENSG00000135018				37	0	0	42	6	12.5
S1PR3	0	genome.wustl.edu	37	9	91616794	91616794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	91616794	91616794	C	T	SNP	S1PR3	ENST00000358157	human	ensembl	74_37	+1	known	missense	c.679	p.R227C	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_EDG3_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_EDG3_rcpt,prints_S1P_rcpt,prints_GPCR_Rhodpsn,prints_EDG1_rcpt,prints_Cnbnoid_rcpt	-	no_errors	S1PR3	HGNC	ENSG00000213694				82	0	0	65	19	22.619
IARS	0	genome.wustl.edu	37	9	95043054	95043054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	95043054	95043054	G	A	SNP	IARS	ENST00000375643	human	ensembl	74_37	-1	known	missense	c.719	p.P240L	1.000	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS	HGNC	ENSG00000196305				56	0	0	29	6	17.1429
FGD3	0	genome.wustl.edu	37	9	95768325	95768325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	95768325	95768325	G	A	SNP	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	missense	c.700	p.G234R	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				135	0	0	136	34	20
XKRX	0	genome.wustl.edu	37	X	100183284	100183284	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	100183284	100183284	C	G	SNP	XKRX	ENST00000328526	human	ensembl	74_37	-1	known	missense	c.49	p.V17L	1.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKRX	HGNC	ENSG00000182489				263	0	0	218	37	14.5098
IL1RAPL2	0	genome.wustl.edu	37	X	104984565	104984565	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	104984565	104984565	A	C	SNP	IL1RAPL2	ENST00000344799	human	ensembl	74_37	+1	known	missense	c.929	p.K310T	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ	-	no_errors	IL1RAPL2	HGNC	ENSG00000189108				113	0	0	80	15	15.7895
IRS4	0	genome.wustl.edu	37	X	107976159	107976159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	107976159	107976159	G	A	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	missense	c.3416	p.A1139V	0.000	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				112	0	0	165	48	22.5352
KIAA1210	0	genome.wustl.edu	37	X	118223525	118223525	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	118223525	118223525	G	A	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	silent	c.1668	p.S556	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423				190	0	0	182	31	14.554
AKAP14	0	genome.wustl.edu	37	X	119053878	119053878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	119053878	119053878	C	T	SNP	AKAP14	ENST00000371431	human	ensembl	74_37	+1	known	missense	c.446	p.A149V	0.000	NULL	NULL	-	no_errors	AKAP14	HGNC	ENSG00000186471				108	0	0	80	14	14.8936
RHOXF2	0	genome.wustl.edu	37	X	119293200	119293200	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	119293200	119293200	G	A	SNP	RHOXF2	ENST00000371388	human	ensembl	74_37	+1	known	missense	c.359	p.R120H	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	RHOXF2	HGNC	ENSG00000131721				19	0	0	26	9	25.7143
TENM1	0	genome.wustl.edu	37	X	123556188	123556188	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	123556188	123556188	A	G	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.4405	p.Y1469H	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				131	0	0	112	31	21.6783
TLR7	0	genome.wustl.edu	37	X	12906073	12906073	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	12906073	12906073	G	T	SNP	TLR7	ENST00000380659	human	ensembl	74_37	+1	known	missense	c.2446	p.G816W	0.361	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664				136	0	0	108	15	12.1951
MBNL3	0	genome.wustl.edu	37	X	131524939	131524939	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	131524939	131524939	G	A	SNP	MBNL3	ENST00000370853	human	ensembl	74_37	-1	known	missense	c.707	p.A236V	1.000	NULL	smart_Znf_CCCH	-	no_errors	MBNL3	HGNC	ENSG00000076770				113	0	0	92	16	14.8148
MBNL3	0	genome.wustl.edu	37	X	131540407	131540407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	131540407	131540407	C	T	SNP	MBNL3	ENST00000370853	human	ensembl	74_37	-1	known	missense	c.191	p.R64Q	1.000	smart_Znf_CCCH	smart_Znf_CCCH	-	no_errors	MBNL3	HGNC	ENSG00000076770				50	0	0	58	19	24.6753
MTMR1	0	genome.wustl.edu	37	X	149919511	149919511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	149919511	149919511	G	A	SNP	MTMR1	ENST00000451863	human	ensembl	74_37	+1	known	missense	c.1666	p.A556T	0.005	NULL	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR1	HGNC	ENSG00000063601				16	0	0	13	5	27.7778
ATP2B3	0	genome.wustl.edu	37	X	152818528	152818528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	152818528	152818528	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.1859	p.R620Q	0.973	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				58	0	0	83	6	6.74157
ASB11	0	genome.wustl.edu	37	X	15306058	15306058	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	15306058	15306058	C	T	SNP	ASB11	ENST00000480796	human	ensembl	74_37	-1	known	silent	c.792	p.A264	0.006	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB11	HGNC	ENSG00000165192				84	0	0	78	13	14.2857
F8	0	genome.wustl.edu	37	X	154091411	154091411	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	154091411	154091411	T	C	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	missense	c.6521	p.H2174R	0.280	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				128	0	0	68	21	23.5955
F8	0	genome.wustl.edu	37	X	154194217	154194217	+	RNA	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	154194217	154194217	C	A	SNP	F8	ENST00000483822	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	F8	HGNC	ENSG00000185010				76	0	0	54	13	19.403
BEND2	0	genome.wustl.edu	37	X	18198717	18198717	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	18198717	18198717	C	T	SNP	BEND2	ENST00000380033	human	ensembl	74_37	-1	known	missense	c.1342	p.V448I	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324				100	0	0	82	21	20.3883
SCML2	0	genome.wustl.edu	37	X	18274983	18274983	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	18274983	18274983	C	G	SNP	SCML2	ENST00000251900	human	ensembl	74_37	-1	known	missense	c.1441	p.D481H	0.143	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SCML2	HGNC	ENSG00000102098				137	0	0	103	18	14.876
DHRSX	0	genome.wustl.edu	37	X	2139163	2139163	+	Silent	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	2139163	2139163	G	A	SNP	DHRSX	ENST00000334651	human	ensembl	74_37	-1	known	silent	c.912	p.H304	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRSX	HGNC	ENSG00000169084				121	0	0	108	21	16.2791
PTCHD1	0	genome.wustl.edu	37	X	23353224	23353224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	23353224	23353224	C	T	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	missense	c.232	p.R78C	1.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186				62	0	0	69	17	19.7674
MXRA5	0	genome.wustl.edu	37	X	3235238	3235238	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	3235238	3235238	C	A	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	nonsense	c.6484	p.G2162*	0.163	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				31	0	0	26	7	21.2121
CXorf22	0	genome.wustl.edu	37	X	36007458	36007458	+	Silent	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	36007458	36007458	A	C	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	+1	known	silent	c.2736	p.S912	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164				51	0	0	26	5	16.129
ZNF182	0	genome.wustl.edu	37	X	47836703	47836703	+	Silent	SNP	A	A	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	47836703	47836703	A	G	SNP	ZNF182	ENST00000305127	human	ensembl	74_37	-1	known	silent	c.783	p.P261	0.637	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF182	HGNC	ENSG00000147118				106	0	0	59	16	21.3333
ZNF182	0	genome.wustl.edu	37	X	47837005	47837005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	47837005	47837005	C	T	SNP	ZNF182	ENST00000305127	human	ensembl	74_37	-1	known	missense	c.481	p.E161K	0.100	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF182	HGNC	ENSG00000147118				60	0	0	32	15	31.9149
AKAP4	0	genome.wustl.edu	37	X	49958568	49958568	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	49958568	49958568	G	C	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	missense	c.796	p.P266A	0.578	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081				92	0	0	76	9	10.5882
PHF8	0	genome.wustl.edu	37	X	53966872	53966872	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	53966872	53966872	T	A	SNP	PHF8	ENST00000357988	human	ensembl	74_37	-1	known	missense	c.2835	p.Q945H	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943				28	0	0	22	4	15.3846
GNL3L	0	genome.wustl.edu	37	X	54585017	54585017	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	54585017	54585017	C	T	SNP	GNL3L	ENST00000336470	human	ensembl	74_37	+1	known	missense	c.1595	p.T532M	0.931	NULL	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119				36	0	0	43	5	10.4167
APEX2	0	genome.wustl.edu	37	X	55026949	55026949	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	55026949	55026949	G	A	SNP	APEX2	ENST00000374987	human	ensembl	74_37	+1	known	missense	c.94	p.V32M	0.007	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_AP_endonuc_1	pfam_Endo/exonuclease/phosphatase,pfam_Znf_GRF,superfamily_Endo/exonuclease/phosphatase,tigrfam_AP_endonuc_1	-	no_errors	APEX2	HGNC	ENSG00000169188				28	0	0	27	3	10
FAAH2	0	genome.wustl.edu	37	X	57318993	57318993	+	Silent	SNP	C	C	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	57318993	57318993	C	A	SNP	FAAH2	ENST00000374900	human	ensembl	74_37	+1	known	silent	c.255	p.I85	1.000	pfam_Amidase,superfamily_Amidase_dom	pfam_Amidase,superfamily_Amidase_dom	-	no_errors	FAAH2	HGNC	ENSG00000165591				110	0	0	61	14	18.6667
SPIN4	0	genome.wustl.edu	37	X	62570006	62570006	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	62570006	62570006	G	T	SNP	SPIN4	ENST00000335144	human	ensembl	74_37	-1	known	missense	c.693	p.F231L	1.000	pfam_Spin_Ssty	pfam_Spin_Ssty	-	no_errors	SPIN4	HGNC	ENSG00000186767				81	0	0	77	18	18.9474
HEPH	0	genome.wustl.edu	37	X	65423338	65423338	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	65423338	65423338	T	C	SNP	HEPH	ENST00000519389	human	ensembl	74_37	+1	known	missense	c.2372	p.I791T	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472				58	0	0	49	4	7.54717
MED12	0	genome.wustl.edu	37	X	70356310	70356310	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	70356310	70356310	C	T	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	silent	c.5205	p.R1735	0.007	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				48	0	0	32	7	17.9487
NLGN3	0	genome.wustl.edu	37	X	70367958	70367958	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	70367958	70367958	C	T	SNP	NLGN3	ENST00000358741	human	ensembl	74_37	+1	known	missense	c.359	p.P120L	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338				70	0	0	75	18	19.3548
LPAR4	0	genome.wustl.edu	37	X	78010799	78010799	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	78010799	78010799	C	T	SNP	LPAR4	ENST00000435339	human	ensembl	74_37	+1	known	nonsense	c.433	p.R145*	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	LPAR4	HGNC	ENSG00000147145				118	0	0	89	21	19.0909
CYLC1	0	genome.wustl.edu	37	X	83128372	83128372	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	83128372	83128372	A	C	SNP	CYLC1	ENST00000329312	human	ensembl	74_37	+1	known	missense	c.656	p.N219T	0.000	NULL	NULL	-	no_errors	CYLC1	HGNC	ENSG00000183035				29	0	0	16	5	23.8095
DACH2	0	genome.wustl.edu	37	X	85404095	85404095	+	Silent	SNP	C	C	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	85404095	85404095	C	T	SNP	DACH2	ENST00000373125	human	ensembl	74_37	+1	known	silent	c.471	p.T157	0.975	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733				46	0	0	46	8	14.8148
TGIF2LX	0	genome.wustl.edu	37	X	89177210	89177210	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	89177210	89177210	A	C	SNP	TGIF2LX	ENST00000283891	human	ensembl	74_37	+1	known	missense	c.126	p.R42S	0.017	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF2LX	HGNC	ENSG00000153779				61	0	0	62	16	20.5128
SYTL4	0	genome.wustl.edu	37	X	99943432	99943432	+	Silent	SNP	T	T	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	99943432	99943432	T	C	SNP	SYTL4	ENST00000454200	human	ensembl	74_37	-1	known	silent	c.927	p.E309	0.801	NULL	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362				37	0	0	28	8	22.2222
HIAT1	0	genome.wustl.edu	37	1	100534122	100534122	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	100534122	100534122	T	-	DEL	HIAT1	ENST00000370152	human	ensembl	74_37	+1	known	frame_shift_del	c.799	p.L269fs	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIAT1	HGNC	ENSG00000156875				114	0	0	69	10	12.6582
AMY2B	0	genome.wustl.edu	37	1	104112876	104112876	+	RNA	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	104112876	104112876	C	-	DEL	AMY2B	ENST00000491397	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AMY2B	HGNC	ENSG00000240038				38	0	0	33	5	13.1579
ATXN7L2	0	genome.wustl.edu	37	1	110035319	110035319	+	RNA	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	110035319	110035319	T	-	DEL	ATXN7L2	ENST00000459635	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ATXN7L2	HGNC	ENSG00000162650				34	0	0	51	12	19.0476
SLC16A4	0	genome.wustl.edu	37	1	110906427	110906427	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	110906427	110906427	A	-	DEL	SLC16A4	ENST00000369779	human	ensembl	74_37	-1	known	frame_shift_del	c.1425	p.F475fs	0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679				66	0	0	40	27	40.2985
CEPT1	0	genome.wustl.edu	37	1	111690320	111690320	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	111690320	111690320	A	-	DEL	CEPT1	ENST00000460443	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CEPT1	HGNC	ENSG00000134255				32	0	0	26	6	18.75
SYCP1	0	genome.wustl.edu	37	1	115469133	115469134	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	115469133	115469134	-	A	INS	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_ins	c.1875_1876	p.G628fs	0.992:1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				22	0	0	11	2	15.3846
ADAM30	0	genome.wustl.edu	37	1	120437094	120437095	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	120437094	120437095	-	T	INS	ADAM30	ENST00000369400	human	ensembl	74_37	-1	known	frame_shift_ins	c.1866_1865	p.N622fs	0.003:0.000	smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM30	HGNC	ENSG00000134249				88	0	0	75	14	15.7303
AADACL3	0	genome.wustl.edu	37	1	12785494	12785494	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	12785494	12785494	G	-	DEL	AADACL3	ENST00000359318	human	ensembl	74_37	+1	known	frame_shift_del	c.584	p.C195fs	0.040	NULL	pfam_AB_hydrolase_3	-	no_errors	AADACL3	HGNC	ENSG00000188984				210	0	0	156	19	10.8571
ADAMTSL4	0	genome.wustl.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	150530506	150530506	G	-	DEL	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	frame_shift_del	c.2332	p.G780fs	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				103	0	0	162	29	15.1832
LYSMD1	0	genome.wustl.edu	37	1	151134215	151134215	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	151134215	151134215	T	-	DEL	LYSMD1	ENST00000368908	human	ensembl	74_37	-1	known	frame_shift_del	c.542	p.N181fs	0.030	NULL	pfam_LysM_dom,smart_LysM_dom	-	no_errors	LYSMD1	HGNC	ENSG00000163155				147	0	0	152	26	14.6067
SLC27A3	0	genome.wustl.edu	37	1	153751860	153751860	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	153751860	153751860	C	-	DEL	SLC27A3	ENST00000368661	human	ensembl	74_37	+1	known	frame_shift_del	c.1927	p.H645fs	0.247	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A3	HGNC	ENSG00000143554				125	0	0	102	16	13.5593
ATP1A4	0	genome.wustl.edu	37	1	160124898	160124898	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	160124898	160124898	C	-	DEL	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	frame_shift_del	c.271	p.T93fs	1.000	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				124	1	0.8	96	19	16.5217
ADCY10	0	genome.wustl.edu	37	1	167865906	167865906	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	167865906	167865906	G	-	DEL	ADCY10	ENST00000367851	human	ensembl	74_37	-1	known	frame_shift_del	c.666	p.N223fs	0.005	pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,superfamily_P-loop_NTPase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199				198	0	0	109	32	22.695
SEC16B	0	genome.wustl.edu	37	1	177927333	177927333	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	177927333	177927333	G	-	DEL	SEC16B	ENST00000308284	human	ensembl	74_37	-1	known	frame_shift_del	c.1299	p.S434fs	0.033	NULL	NULL	-	no_errors	SEC16B	HGNC	ENSG00000120341				45	0	0	41	7	14.5833
NCF2	0	genome.wustl.edu	37	1	183533129	183533129	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	183533129	183533129	A	-	DEL	NCF2	ENST00000469280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	NCF2	HGNC	ENSG00000116701				233	0	0	153	15	8.92857
HMCN1	0	genome.wustl.edu	37	1	185897784	185897784	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	185897784	185897784	T	-	DEL	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	frame_shift_del	c.1537	p.F514fs	0.999	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				138	0	0	108	20	15.625
ASPM	0	genome.wustl.edu	37	1	197070524	197070524	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	197070524	197070524	T	-	DEL	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	frame_shift_del	c.7857	p.K2619fs	0.001	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				24	0	0	15	3	16.6667
PLEKHA6	0	genome.wustl.edu	37	1	204228512	204228512	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	204228512	204228512	C	-	DEL	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	frame_shift_del	c.881	p.G294fs	0.453	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				143	0	0	135	20	12.9032
LRRN2	0	genome.wustl.edu	37	1	204587829	204587829	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	204587829	204587829	G	-	DEL	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	frame_shift_del	c.1292	p.P431fs	0.386	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				35	0	0	37	7	15.9091
CR2	0	genome.wustl.edu	37	1	207642044	207642044	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	207642044	207642044	C	-	DEL	CR2	ENST00000367057	human	ensembl	74_37	+1	known	frame_shift_del	c.618	p.T209fs	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322				146	0	0	126	16	11.2676
TGFB2	0	genome.wustl.edu	37	1	218609371	218609371	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	218609371	218609371	A	-	DEL	TGFB2	ENST00000366929	human	ensembl	74_37	+1	known	frame_shift_del	c.898	p.N302fs	1.000	pirsf_TGF-beta,prints_TGFb2	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_TGFb2,prints_TGF-beta	-	no_errors	TGFB2	HGNC	ENSG00000092969				53	0	0	69	10	12.6582
TP53BP2	0	genome.wustl.edu	37	1	223991931	223991931	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	223991931	223991931	T	-	DEL	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	frame_shift_del	c.594	p.V199fs	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514				188	0	0	166	27	13.9896
TMEM63A	0	genome.wustl.edu	37	1	226034781	226034788	+	Frame_Shift_Del	DEL	CTCTGCGC	CTCTGCGC	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CTCTGCGC	CTCTGCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	226034781	226034788	CTCTGCGC	-	DEL	TMEM63A	ENST00000366835	human	ensembl	74_37	-1	known	frame_shift_del	c.2384_2377	p.A793fs	0.000:0.001:0.002:0.004:0.006:0.000:0.002:0.003	NULL	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187				115	0	0	112	19	14.5038
ACBD3	0	genome.wustl.edu	37	1	226352491	226352491	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	226352491	226352491	T	-	DEL	ACBD3	ENST00000366812	human	ensembl	74_37	-1	known	frame_shift_del	c.568	p.R190fs	1.000	NULL	pfam_Acyl-CoA-binding_protein,superfamily_GOLD,superfamily_Acyl-CoA-binding_protein,pfscan_GOLD	-	no_errors	ACBD3	HGNC	ENSG00000182827				74	0	0	37	9	19.5652
JMJD4	0	genome.wustl.edu	37	1	227921298	227921299	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	227921298	227921299	-	G	INS	JMJD4	ENST00000366758	human	ensembl	74_37	-1	known	frame_shift_ins	c.777_776	p.G260fs	0.134:0.995	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD4	HGNC	ENSG00000081692				37	0	0	36	7	16.2791
GREM2	0	genome.wustl.edu	37	1	240656607	240656613	+	Frame_Shift_Del	DEL	GGCTGGA	GGCTGGA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	GGCTGGA	GGCTGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	240656607	240656613	GGCTGGA	-	DEL	GREM2	ENST00000318160	human	ensembl	74_37	-1	known	frame_shift_del	c.169_163	p.S55fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_DAN,pirsf_Gremlin_precursor	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	-	no_errors	GREM2	HGNC	ENSG00000180875				67	0	0	73	11	13.0952
OR14C36	0	genome.wustl.edu	37	1	248512384	248512384	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	248512384	248512384	T	-	DEL	OR14C36	ENST00000317861	human	ensembl	74_37	+1	known	frame_shift_del	c.308	p.F105fs	0.004	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14C36	HGNC	ENSG00000177174				58	0	0	61	11	15.2778
OR2G6	0	genome.wustl.edu	37	1	248685798	248685798	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	248685798	248685798	T	-	DEL	OR2G6	ENST00000343414	human	ensembl	74_37	+1	known	frame_shift_del	c.851	p.L285fs	0.187	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558				58	0	0	44	7	13.7255
ARID1A	0	genome.wustl.edu	37	1	27097751	27097751	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	27097751	27097751	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.3340	p.P1115fs	1.000	superfamily_ARID/BRIGHT_DNA-bd	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				67	0	0	60	9	13.0435
ARID1A	0	genome.wustl.edu	37	1	27105931	27105931	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	27105931	27105931	G	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.5542	p.D1850fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				123	0	0	132	8	5.71429
PTP4A2	0	genome.wustl.edu	37	1	32384717	32384717	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	32384717	32384717	A	-	DEL	PTP4A2	ENST00000532289	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTP4A2	HGNC	ENSG00000184007				18	0	0	11	6	35.2941
ZMYM4	0	genome.wustl.edu	37	1	35825031	35825031	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	35825031	35825031	T	-	DEL	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	frame_shift_del	c.591	p.F199fs	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				32	0	0	28	8	22.2222
ZMYM4	0	genome.wustl.edu	37	1	35846959	35846960	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	35846959	35846960	-	A	INS	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	frame_shift_ins	c.1281_1282	p.P430fs	0.987:1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				65	0	0	51	6	10.5263
TRIT1	0	genome.wustl.edu	37	1	40307382	40307384	+	RNA	DEL	CCA	CCA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	40307382	40307384	CCA	-	DEL	TRIT1	ENST00000491865	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	TRIT1	HGNC	ENSG00000043514				304	0	0	262	29	9.96564
SLC5A9	0	genome.wustl.edu	37	1	48698101	48698101	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	48698101	48698101	G	-	DEL	SLC5A9	ENST00000236495	human	ensembl	74_37	+1	known	frame_shift_del	c.1035	p.G347fs	0.988	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A9	HGNC	ENSG00000117834				50	0	0	46	6	11.5385
SPATA6	0	genome.wustl.edu	37	1	48821382	48821382	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	48821382	48821382	T	-	DEL	SPATA6	ENST00000371847	human	ensembl	74_37	-1	known	frame_shift_del	c.1154	p.N385fs	1.000	NULL	NULL	-	no_errors	SPATA6	HGNC	ENSG00000132122				87	0	0	66	7	9.58904
DMRTB1	0	genome.wustl.edu	37	1	53930350	53930351	+	In_Frame_Ins	INS	-	-	GCCGCC			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	53930350	53930351	-	GCCGCC	INS	DMRTB1	ENST00000371445	human	ensembl	74_37	+1	known	in_frame_ins	c.791_792	p.268in_frame_insPP	0.012:0.001	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTB1	HGNC	ENSG00000143006				49	0	0	71	7	8.97436
USP1	0	genome.wustl.edu	37	1	62916272	62916272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	62916272	62916272	A	-	DEL	USP1	ENST00000339950	human	ensembl	74_37	+1	known	frame_shift_del	c.1978	p.N662fs	1.000	pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP1	HGNC	ENSG00000162607				58	0	0	35	15	30
C1orf173	0	genome.wustl.edu	37	1	75072496	75072498	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	75072496	75072498	CTT	-	DEL	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	in_frame_del	c.1278_1276	p.K426in_frame_del	0.000:0.029:0.027	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				143	0	0	113	19	14.3939
LPAR3	0	genome.wustl.edu	37	1	85331665	85331665	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	85331665	85331665	A	-	DEL	LPAR3	ENST00000370611	human	ensembl	74_37	-1	known	frame_shift_del	c.139	p.S47fs	1.000	pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG7,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG7,prints_GPCR_Rhodpsn,prints_LPA_rcpt,prints_LPA_rcpt_EDG2,prints_Melcrt_ACTH_rcpt	-	no_errors	LPAR3	HGNC	ENSG00000171517				102	1	0.970874	105	19	15.3226
AGRN	0	genome.wustl.edu	37	1	981861	981861	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	1	981861	981861	C	-	DEL	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	frame_shift_del	c.2996	p.G1002fs	0.000	NULL	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				20	0	0	29	6	17.1429
PDCD11	0	genome.wustl.edu	37	10	105173019	105173019	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	105173019	105173019	T	-	DEL	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	frame_shift_del	c.1125	p.F377fs	0.915	superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				101	0	0	87	6	6.45161
TCF7L2	0	genome.wustl.edu	37	10	114849205	114849206	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	114849205	114849206	-	C	INS	TCF7L2	ENST00000355717	human	ensembl	74_37	+1	known	frame_shift_ins	c.530_531	p.S180fs	0.998:1.000	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L2	HGNC	ENSG00000148737				55	0	0	53	6	10.1695
CPXM2	0	genome.wustl.edu	37	10	125514247	125514248	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	125514247	125514248	TC	-	DEL	CPXM2	ENST00000241305	human	ensembl	74_37	-1	known	frame_shift_del	c.1949_1948	p.D650fs	0.998:1.000	superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898				149	0	0	112	18	13.8462
MKI67	0	genome.wustl.edu	37	10	129913974	129913974	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	129913974	129913974	T	-	DEL	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	frame_shift_del	c.698	p.N233fs	0.003	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				59	0	0	35	9	20.4545
TTC40	0	genome.wustl.edu	37	10	134752167	134752167	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	134752167	134752167	G	-	DEL	TTC40	ENST00000368582	human	ensembl	74_37	-1	known	frame_shift_del	c.462	p.S155fs	1.000	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811				125	0	0	102	24	19.0476
DLG5	0	genome.wustl.edu	37	10	79601948	79601948	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	79601948	79601948	A	-	DEL	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	frame_shift_del	c.1128	p.F376fs	0.941	NULL	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				94	0	0	99	20	16.8067
GATA3	0	genome.wustl.edu	37	10	8100425	8100425	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	8100425	8100425	C	-	DEL	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	frame_shift_del	c.399	p.P135fs	0.942	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				139	0	0	165	24	12.6984
TMEM254	0	genome.wustl.edu	37	10	81850718	81850719	+	RNA	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	81850718	81850719	-	T	INS	TMEM254	ENST00000463029	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.070:0.071	-	-	-	no_errors	TMEM254	HGNC	ENSG00000133678				68	0	0	59	13	18.0556
BTAF1	0	genome.wustl.edu	37	10	93756247	93756247	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	93756247	93756247	T	-	DEL	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	frame_shift_del	c.3431	p.L1146fs	1.000	superfamily_ARM-type_fold	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				70	0	0	51	10	16.3934
PIK3AP1	0	genome.wustl.edu	37	10	98469337	98469337	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	98469337	98469337	T	-	DEL	PIK3AP1	ENST00000339364	human	ensembl	74_37	-1	known	frame_shift_del	c.417	p.A140fs	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629				121	0	0	116	23	16.5468
MMS19	0	genome.wustl.edu	37	10	99229436	99229437	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	10	99229436	99229437	-	A	INS	MMS19	ENST00000370782	human	ensembl	74_37	-1	known	frame_shift_ins	c.891_890	p.L298fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Tscrpt_C,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229				43	0	0	41	9	18
ACAT1	0	genome.wustl.edu	37	11	108004588	108004588	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	108004588	108004588	T	-	DEL	ACAT1	ENST00000265838	human	ensembl	74_37	+1	known	frame_shift_del	c.162	p.L56fs	1.000	pfam_Thiolase_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,pfam_Ketoacyl_synth_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAT1	HGNC	ENSG00000075239				70	0	0	68	11	13.9241
RDX	0	genome.wustl.edu	37	11	110104137	110104137	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	110104137	110104137	G	-	DEL	RDX	ENST00000530749	human	ensembl	74_37	-1	known	frame_shift_del	c.1412	p.P471fs	1.000	pirsf_ERM,pfam_ERM_C_dom,superfamily_Adenylate_cyclase-assoc_CAP_N	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	RDX	HGNC	ENSG00000137710				128	0	0	103	17	14.1667
CADM1	0	genome.wustl.edu	37	11	115080311	115080312	+	In_Frame_Ins	INS	-	-	TGG			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	115080311	115080312	-	TGG	INS	CADM1	ENST00000452722	human	ensembl	74_37	-1	known	in_frame_ins	c.1061_1060	p.354in_frame_insT	0.999:1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM1	HGNC	ENSG00000182985				63	0	0	55	14	20.2899
OR8D4	0	genome.wustl.edu	37	11	123777442	123777442	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	123777442	123777442	T	-	DEL	OR8D4	ENST00000321355	human	ensembl	74_37	+1	known	frame_shift_del	c.304	p.F104fs	0.939	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D4	HGNC	ENSG00000181518				276	0	0	210	35	14.2857
PRDM10	0	genome.wustl.edu	37	11	129780429	129780431	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	129780429	129780431	CTG	-	DEL	PRDM10	ENST00000358825	human	ensembl	74_37	-1	known	in_frame_del	c.3117_3115	p.Q1039in_frame_del	0.107:0.998:1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325				44	0	0	64	13	16.8831
KCNC1	0	genome.wustl.edu	37	11	17794004	17794004	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	17794004	17794004	A	-	DEL	KCNC1	ENST00000265969	human	ensembl	74_37	+1	known	frame_shift_del	c.1363	p.K457fs	1.000	prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159				88	0	0	84	16	16
KCNA4	0	genome.wustl.edu	37	11	30033563	30033563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	30033563	30033563	A	-	DEL	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	frame_shift_del	c.663	p.F221fs	0.902	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				105	0	0	74	11	12.9412
HIPK3	0	genome.wustl.edu	37	11	33358692	33358693	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	33358692	33358693	-	T	INS	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	frame_shift_ins	c.1293_1294	p.C433fs	1.000:1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				30	0	0	27	4	12.9032
TRIM68	0	genome.wustl.edu	37	11	4621796	4621796	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	4621796	4621796	G	-	DEL	TRIM68	ENST00000300747	human	ensembl	74_37	-1	known	frame_shift_del	c.1168	p.H390fs	0.160	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM68	HGNC	ENSG00000167333				58	0	0	50	11	18.0328
SPI1	0	genome.wustl.edu	37	11	47399861	47399861	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	47399861	47399861	G	-	DEL	SPI1	ENST00000227163	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.P15fs	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPI1	HGNC	ENSG00000066336				31	0	0	33	4	10.8108
TUT1	0	genome.wustl.edu	37	11	62348879	62348881	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	62348879	62348881	CCT	-	DEL	TUT1	ENST00000308436	human	ensembl	74_37	-1	known	in_frame_del	c.682_680	p.E227in_frame_del	1.000:1.000:1.000	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016				42	0	0	43	10	18.8679
SLC3A2	0	genome.wustl.edu	37	11	62649529	62649529	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	62649529	62649529	A	-	DEL	SLC3A2	ENST00000377892	human	ensembl	74_37	+1	known	frame_shift_del	c.985	p.K331fs	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003				75	0	0	44	12	21.4286
SLC22A9	0	genome.wustl.edu	37	11	63149671	63149672	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	63149671	63149672	AA	-	DEL	SLC22A9	ENST00000279178	human	ensembl	74_37	+1	known	frame_shift_del	c.995_996	p.K335fs	0.005:0.008	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A9	HGNC	ENSG00000149742				144	0	0	93	28	23.1405
YIF1A	0	genome.wustl.edu	37	11	66052322	66052323	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	66052322	66052323	-	G	INS	YIF1A	ENST00000471387	human	ensembl	74_37	-1	putative	frame_shift_ins	c.328_327	p.I109fs	0.000:0.002	NULL	pfam_Hrf1	-	no_errors	YIF1A	HGNC	ENSG00000174851				47	0	0	60	13	17.8082
DPP3	0	genome.wustl.edu	37	11	66272154	66272155	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	66272154	66272155	-	C	INS	DPP3	ENST00000360510	human	ensembl	74_37	+1	known	frame_shift_ins	c.1950_1951	p.E652fs	0.001:0.061	pirsf_Dipeptidyl-peptase3	pirsf_Dipeptidyl-peptase3	-	no_errors	DPP3	HGNC	ENSG00000254986				79	0	0	96	21	17.9487
PPP1CA	0	genome.wustl.edu	37	11	67165933	67165933	+	RNA	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	67165933	67165933	C	-	DEL	PPP1CA	ENST00000532446	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.080	-	-	-	no_errors	PPP1CA	HGNC	ENSG00000172531				14	0	0	14	4	22.2222
MYEOV	0	genome.wustl.edu	37	11	69063724	69063724	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	69063724	69063724	G	-	DEL	MYEOV	ENST00000308946	human	ensembl	74_37	+1	known	frame_shift_del	c.807	p.W272fs	0.001	NULL	NULL	-	no_errors	MYEOV	HGNC	ENSG00000172927				37	0	0	26	4	13.3333
EPS8L2	0	genome.wustl.edu	37	11	723304	723305	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	723304	723305	-	C	INS	EPS8L2	ENST00000318562	human	ensembl	74_37	+1	known	frame_shift_ins	c.1405_1406	p.G473fs	0.006:0.005	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106				119	0	0	86	11	11.3402
ENSG00000254420	0	genome.wustl.edu	37	11	78154811	78154812	+	RNA	DEL	AA	AA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	78154811	78154812	AA	-	DEL	ENSG00000254420	ENST00000534168	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.006	-	-	-	no_errors	RP11-452H21.1	Clone_based_vega_gene	ENSG00000254420				37	0	0	32	5	13.5135
CEP57	0	genome.wustl.edu	37	11	95564332	95564332	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	11	95564332	95564332	A	-	DEL	CEP57	ENST00000325542	human	ensembl	74_37	+1	known	frame_shift_del	c.1415	p.R474fs	1.000	NULL	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037				51	0	0	39	7	15.2174
RNF10	0	genome.wustl.edu	37	12	121014514	121014514	+	RNA	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	121014514	121014514	T	-	DEL	RNF10	ENST00000535470	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RNF10	HGNC	ENSG00000022840				120	0	0	77	18	18.9474
VPS37B	0	genome.wustl.edu	37	12	123351892	123351892	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	123351892	123351892	G	-	DEL	VPS37B	ENST00000267202	human	ensembl	74_37	-1	known	frame_shift_del	c.629	p.P210fs	0.609	NULL	pfam_Mod_r	-	no_errors	VPS37B	HGNC	ENSG00000139722				25	0	0	25	6	19.3548
CMAS	0	genome.wustl.edu	37	12	22213771	22213771	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	22213771	22213771	A	-	DEL	CMAS	ENST00000229329	human	ensembl	74_37	+1	known	frame_shift_del	c.699	p.M235fs	0.820	pfam_Cytidylyl_trans	pfam_Cytidylyl_trans,superfamily_HAD-like_dom	-	no_errors	CMAS	HGNC	ENSG00000111726				84	0	0	50	9	15.2542
GXYLT1	0	genome.wustl.edu	37	12	42499815	42499816	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	42499815	42499816	-	A	INS	GXYLT1	ENST00000398675	human	ensembl	74_37	-1	known	frame_shift_ins	c.669_668	p.L223fs	0.997:1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233				49	0	0	35	9	20.4545
FGF23	0	genome.wustl.edu	37	12	4479807	4479807	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	4479807	4479807	G	-	DEL	FGF23	ENST00000237837	human	ensembl	74_37	-1	known	frame_shift_del	c.458	p.P153fs	0.985	superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF23	HGNC	ENSG00000118972				111	0	0	107	10	8.54701
ADCY6	0	genome.wustl.edu	37	12	49177036	49177036	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	49177036	49177036	G	-	DEL	ADCY6	ENST00000307885	human	ensembl	74_37	-1	known	frame_shift_del	c.182	p.P61fs	0.013	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY6	HGNC	ENSG00000174233				33	0	0	61	6	8.95522
KMT2D	0	genome.wustl.edu	37	12	49445500	49445500	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	49445500	49445500	G	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.1966	p.L656fs	0.001	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				77	0	0	75	16	17.5824
CBX5	0	genome.wustl.edu	37	12	54645832	54645832	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	12	54645832	54645832	T	-	DEL	CBX5	ENST00000209875	human	ensembl	74_37	-1	known	frame_shift_del	c.317	p.K106fs	1.000	superfamily_Chromodomain-like	pfam_Chromo_shadow_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Chromo_shadow_dom,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX5	HGNC	ENSG00000094916				192	0	0	104	25	19.3798
GRTP1	0	genome.wustl.edu	37	13	113979911	113979911	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	113979911	113979911	C	-	DEL	GRTP1	ENST00000375430	human	ensembl	74_37	-1	known	frame_shift_del	c.986	p.G329fs	0.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	GRTP1	HGNC	ENSG00000139835				27	0	0	22	7	24.1379
CDC16	0	genome.wustl.edu	37	13	115037720	115037720	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	115037720	115037720	A	-	DEL	CDC16	ENST00000356221	human	ensembl	74_37	+1	known	frame_shift_del	c.1665	p.N557fs	0.999	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC16	HGNC	ENSG00000130177				48	0	0	40	14	25.9259
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				32	0	0	21	3	12.5
SACS	0	genome.wustl.edu	37	13	23915417	23915417	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	23915417	23915417	T	-	DEL	SACS	ENST00000382292	human	ensembl	74_37	-1	known	frame_shift_del	c.2598	p.K866fs	0.967	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				65	0	0	48	15	23.8095
VPS36	0	genome.wustl.edu	37	13	53000038	53000038	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	53000038	53000038	A	-	DEL	VPS36	ENST00000492650	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS36	HGNC	ENSG00000136100				59	0	0	60	18	23.0769
LMO7	0	genome.wustl.edu	37	13	76427254	76427254	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	13	76427254	76427254	C	-	DEL	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	frame_shift_del	c.4547	p.R1518fs	0.996	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153				96	0	0	83	8	8.79121
BAG5	0	genome.wustl.edu	37	14	104026528	104026528	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	104026528	104026528	T	-	DEL	BAG5	ENST00000337322	human	ensembl	74_37	-1	known	frame_shift_del	c.1097	p.N366fs	1.000	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG5	HGNC	ENSG00000166170				95	0	0	71	16	18.3908
MTA1	0	genome.wustl.edu	37	14	105932776	105932776	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	105932776	105932776	C	-	DEL	MTA1	ENST00000331320	human	ensembl	74_37	+1	known	frame_shift_del	c.1638	p.K549fs	0.971	NULL	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA1	HGNC	ENSG00000182979				12	0	0	18	5	21.7391
LTB4R2	0	genome.wustl.edu	37	14	24780905	24780905	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	24780905	24780905	G	-	DEL	LTB4R2	ENST00000528054	human	ensembl	74_37	+1	known	frame_shift_del	c.1128	p.G378fs	0.030	prints_Leukotriene_B4_typ-2_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Leukotriene_B4_typ-2_rcpt,prints_Leukotriene_B4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	LTB4R2	Uniprot_gn	ENSG00000272658				63	0	0	79	12	13.1868
TTLL5	0	genome.wustl.edu	37	14	76156622	76156622	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	76156622	76156622	C	-	DEL	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	frame_shift_del	c.459	p.Q155fs	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				71	0	0	56	7	11.1111
DIO2	0	genome.wustl.edu	37	14	80669574	80669575	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	80669574	80669575	-	T	INS	DIO2	ENST00000422005	human	ensembl	74_37	-1	known	frame_shift_ins	c.280_279	p.G93fs	0.062:0.147	pfam_Iodothyronine_deiodinase	pfam_Iodothyronine_deiodinase	-	no_errors	DIO2	HGNC	ENSG00000211448				15	0	0	15	3	16.6667
SERPINA5	0	genome.wustl.edu	37	14	95053821	95053821	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	14	95053821	95053821	C	-	DEL	SERPINA5	ENST00000329597	human	ensembl	74_37	+1	known	frame_shift_del	c.122	p.S43fs	0.219	superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488				66	0	0	68	13	16.0494
SNORD116-26	0	genome.wustl.edu	37	15	25344663	25344663	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	25344663	25344663	A	-	DEL	SNORD116-26	ENST00000516006	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORD116-26	HGNC	ENSG00000251815				76	0	0	71	16	18.3908
PLA2G4E	0	genome.wustl.edu	37	15	42302337	42302338	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	42302337	42302338	CA	-	DEL	PLA2G4E	ENST00000413860	human	ensembl	74_37	-1	known	frame_shift_del	c.109_108	p.A39fs	0.047:0.024	pfscan_C2_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089				52	0	0	87	15	14.7059
SPG11	0	genome.wustl.edu	37	15	44907750	44907750	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	44907750	44907750	A	-	DEL	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	frame_shift_del	c.2849	p.L950fs	0.982	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133				52	0	0	46	11	19.2982
B2M	0	genome.wustl.edu	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	45003781	45003782	CT	-	DEL	B2M	ENST00000544417	human	ensembl	74_37	+1	known	frame_shift_del	c.37_38	p.L15fs	0.000:0.000	NULL	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	B2M	HGNC	ENSG00000166710				80	0	0	74	14	15.9091
B2M	0	genome.wustl.edu	37	15	45007834	45007834	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	45007834	45007834	A	-	DEL	B2M	ENST00000544417	human	ensembl	74_37	+1	known	frame_shift_del	c.281	p.D96fs	0.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	B2M	HGNC	ENSG00000166710				110	0	0	84	14	14.2857
USP8	0	genome.wustl.edu	37	15	50733661	50733661	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	50733661	50733661	A	-	DEL	USP8	ENST00000307179	human	ensembl	74_37	+1	known	frame_shift_del	c.220	p.R76fs	1.000	pfam_USP8_dimer	pfam_Peptidase_C19/C67,pfam_USP8_dimer,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_dom,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP8	HGNC	ENSG00000138592				56	0	0	29	14	32.5581
PRTG	0	genome.wustl.edu	37	15	55912892	55912892	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	55912892	55912892	A	-	DEL	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	frame_shift_del	c.3167	p.F1056fs	1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450				48	0	0	35	6	14.6341
MNS1	0	genome.wustl.edu	37	15	56736723	56736723	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	56736723	56736723	T	-	DEL	MNS1	ENST00000260453	human	ensembl	74_37	-1	known	frame_shift_del	c.605	p.K202fs	1.000	NULL	NULL	-	no_errors	MNS1	HGNC	ENSG00000138587				96	0	0	66	15	18.5185
NARG2	0	genome.wustl.edu	37	15	60741267	60741267	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	60741267	60741267	T	-	DEL	NARG2	ENST00000261520	human	ensembl	74_37	-1	known	frame_shift_del	c.1899	p.K633fs	1.000	NULL	pfam_NARG2_C	-	no_errors	NARG2	HGNC	ENSG00000128915				68	0	0	39	7	15.2174
VPS13C	0	genome.wustl.edu	37	15	62161812	62161813	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	62161812	62161813	-	T	INS	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	frame_shift_ins	c.10635_10634	p.E3546fs	1.000:1.000	pfam_Autophagy-rel_C	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				116	0	0	124	7	5.34351
TRIP4	0	genome.wustl.edu	37	15	64686218	64686218	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	64686218	64686218	A	-	DEL	TRIP4	ENST00000261884	human	ensembl	74_37	+1	known	frame_shift_del	c.175	p.G61fs	0.978	NULL	pfam_ASCH_domain,pfam_Znf_C2HC5,superfamily_PUA-like_domain	-	no_errors	TRIP4	HGNC	ENSG00000103671				44	0	0	38	9	19.1489
SPG21	0	genome.wustl.edu	37	15	65262526	65262526	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	65262526	65262526	T	-	DEL	SPG21	ENST00000204566	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.I163fs	1.000	NULL	pfam_AB_hydrolase_1	-	no_errors	SPG21	HGNC	ENSG00000090487				232	0	0	156	25	13.8122
PIAS1	0	genome.wustl.edu	37	15	68479955	68479955	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	68479955	68479955	T	-	DEL	PIAS1	ENST00000249636	human	ensembl	74_37	+1	known	frame_shift_del	c.1738	p.F581fs	0.998	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS1	HGNC	ENSG00000033800				66	0	0	46	9	16.3636
MCTP2	0	genome.wustl.edu	37	15	94901801	94901802	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	15	94901801	94901802	-	G	INS	MCTP2	ENST00000357742	human	ensembl	74_37	+1	known	frame_shift_ins	c.1261_1262	p.D424fs	1.000:1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_PRibTrfase_C,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	MCTP2	HGNC	ENSG00000140563				47	0	0	37	7	15.9091
TELO2	0	genome.wustl.edu	37	16	1551464	1551464	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	1551464	1551464	C	-	DEL	TELO2	ENST00000262319	human	ensembl	74_37	+1	known	frame_shift_del	c.1325	p.Q444fs	0.000	NULL	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726				17	0	0	28	4	12.5
FOPNL	0	genome.wustl.edu	37	16	15978038	15978038	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	15978038	15978038	T	-	DEL	FOPNL	ENST00000255759	human	ensembl	74_37	-1	known	frame_shift_del	c.53	p.K18fs	0.435	NULL	pfam_FOP_dimerisation-dom_N,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	FOPNL	HGNC	ENSG00000133393				50	0	0	45	10	18.1818
ARHGAP17	0	genome.wustl.edu	37	16	24942180	24942180	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	24942180	24942180	G	-	DEL	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	frame_shift_del	c.2440	p.Q814fs	0.892	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				167	0	0	212	41	16.2055
GTF3C1	0	genome.wustl.edu	37	16	27509009	27509009	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	27509009	27509009	T	-	DEL	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	frame_shift_del	c.2299	p.S767fs	0.542	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				97	0	0	57	14	19.7183
CD2BP2	0	genome.wustl.edu	37	16	30364358	30364358	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	30364358	30364358	G	-	DEL	CD2BP2	ENST00000305596	human	ensembl	74_37	-1	known	frame_shift_del	c.974	p.P325fs	0.853	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	CD2BP2	HGNC	ENSG00000169217				71	0	0	74	7	8.64198
ADCY9	0	genome.wustl.edu	37	16	4039076	4039076	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	4039076	4039076	A	-	DEL	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	frame_shift_del	c.2229	p.F743fs	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				102	0	0	54	16	22.8571
RBL2	0	genome.wustl.edu	37	16	53504727	53504727	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	53504727	53504727	A	-	DEL	RBL2	ENST00000262133	human	ensembl	74_37	+1	known	frame_shift_del	c.2596	p.I868fs	1.000	pfam_RB_B,superfamily_Cyclin-like,smart_Cyclin-like	pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL2	HGNC	ENSG00000103479				111	0	0	83	13	13.5417
DPEP2	0	genome.wustl.edu	37	16	68021468	68021468	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	68021468	68021468	G	-	DEL	DPEP2	ENST00000393847	human	ensembl	74_37	-1	known	frame_shift_del	c.1402	p.H468fs	0.000	NULL	pfam_Peptidase_M19	-	no_errors	DPEP2	HGNC	ENSG00000167261				156	0	0	138	20	12.6582
ZFHX3	0	genome.wustl.edu	37	16	72821594	72821596	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	72821594	72821596	GCC	-	DEL	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	in_frame_del	c.10581_10579	p.G3527in_frame_del	1.000:1.000:1.000	smart_Znf_U1	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				63	0	0	104	8	7.14286
NUDT7	0	genome.wustl.edu	37	16	77775744	77775744	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	16	77775744	77775744	A	-	DEL	NUDT7	ENST00000268533	human	ensembl	74_37	+1	known	frame_shift_del	c.614	p.K207fs	0.000	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT7	HGNC	ENSG00000140876				59	0	0	43	7	14
MYO15A	0	genome.wustl.edu	37	17	18023583	18023585	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	18023583	18023585	AGG	-	DEL	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	in_frame_del	c.1469_1471	p.E491in_frame_del	0.997:0.981:1.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				60	0	0	63	6	8.69565
SPECC1	0	genome.wustl.edu	37	17	20108263	20108263	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	20108263	20108263	A	-	DEL	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	frame_shift_del	c.901	p.N303fs	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				122	0	0	109	29	21.0145
NEK8	0	genome.wustl.edu	37	17	27068996	27068996	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	27068996	27068996	C	-	DEL	NEK8	ENST00000268766	human	ensembl	74_37	+1	known	frame_shift_del	c.2070	p.*693fs	0.001	NULL	pfam_Prot_kinase_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_RCC1/BLIP-II,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602				133	0	0	114	13	10.2362
SEZ6	0	genome.wustl.edu	37	17	27284483	27284483	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	27284483	27284483	C	-	DEL	SEZ6	ENST00000317338	human	ensembl	74_37	-1	known	frame_shift_del	c.2377	p.A793fs	0.997	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_CUB_dom,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6	HGNC	ENSG00000063015				84	0	0	92	16	14.8148
NF1	0	genome.wustl.edu	37	17	29552144	29552144	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	29552144	29552144	T	-	DEL	NF1	ENST00000358273	human	ensembl	74_37	+1	known	frame_shift_del	c.1877	p.Y628fs	0.976	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				159	1	0.625	89	21	19.0909
GPR179	0	genome.wustl.edu	37	17	36486047	36486047	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	36486047	36486047	G	-	DEL	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	frame_shift_del	c.3405	p.K1136fs	0.610	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888				133	0	0	130	16	10.9589
AOC4P	0	genome.wustl.edu	37	17	41019778	41019778	+	RNA	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	41019778	41019778	C	-	DEL	AOC4P	ENST00000562301	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AOC4P	HGNC	ENSG00000260105				53	0	0	71	5	6.57895
KANSL1	0	genome.wustl.edu	37	17	44248731	44248731	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	44248731	44248731	C	-	DEL	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	frame_shift_del	c.779	p.G260fs	0.930	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				83	0	0	69	13	15.8537
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				110	0	0	85	20	19.0476
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				133	0	0	116	33	22.1477
MTMR4	0	genome.wustl.edu	37	17	56590285	56590285	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	56590285	56590285	G	-	DEL	MTMR4	ENST00000323456	human	ensembl	74_37	-1	known	frame_shift_del	c.21	p.S8fs	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389				96	0	0	103	9	8.03571
INTS2	0	genome.wustl.edu	37	17	59945339	59945339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	59945339	59945339	A	-	DEL	INTS2	ENST00000444766	human	ensembl	74_37	-1	known	frame_shift_del	c.3300	p.F1100fs	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506				23	0	0	24	4	14.2857
CBX8	0	genome.wustl.edu	37	17	77768647	77768648	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	17	77768647	77768648	-	C	INS	CBX8	ENST00000269385	human	ensembl	74_37	-1	known	frame_shift_ins	c.957_956	p.L320fs	0.003:0.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570				29	0	0	38	8	17.3913
USP14	0	genome.wustl.edu	37	18	203145	203146	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	203145	203146	-	T	INS	USP14	ENST00000261601	human	ensembl	74_37	+1	known	frame_shift_ins	c.990_991	p.Y332fs	0.999:1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,smart_Ubiquitin_dom,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP14	HGNC	ENSG00000101557				86	0	0	55	13	19.1176
ZNF521	0	genome.wustl.edu	37	18	22805689	22805689	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	22805689	22805689	A	-	DEL	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	frame_shift_del	c.2193	p.F731fs	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				91	0	0	82	13	13.6842
PIAS2	0	genome.wustl.edu	37	18	44416356	44416357	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	44416356	44416357	-	CA	INS	PIAS2	ENST00000585916	human	ensembl	74_37	-1	known	frame_shift_ins	c.1166_1165	p.D389fs	1.000:1.000	pfam_Znf_MIZ,pfscan_Znf_MIZ	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS2	HGNC	ENSG00000078043				123	0	0	87	18	17.1429
EPB41L3	0	genome.wustl.edu	37	18	5406836	5406836	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	18	5406836	5406836	G	-	DEL	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	frame_shift_del	c.2289	p.V764fs	0.000	pirsf_Band_41_protein,pfam_SAB_dom	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				95	0	0	81	17	17.3469
MAST1	0	genome.wustl.edu	37	19	12977532	12977532	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	12977532	12977532	G	-	DEL	MAST1	ENST00000251472	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.V699fs	0.998	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST1	HGNC	ENSG00000105613				50	0	0	28	6	17.6471
CIB3	0	genome.wustl.edu	37	19	16275719	16275720	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	16275719	16275720	-	A	INS	CIB3	ENST00000269878	human	ensembl	74_37	-1	known	frame_shift_ins	c.352_351	p.N117fs	1.000:0.781	NULL	pfscan_EF_hand_dom	-	no_errors	CIB3	HGNC	ENSG00000141977				97	0	0	115	18	13.5338
MAST3	0	genome.wustl.edu	37	19	18248078	18248078	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	18248078	18248078	T	-	DEL	MAST3	ENST00000262811	human	ensembl	74_37	+1	known	frame_shift_del	c.1915	p.F640fs	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST3	HGNC	ENSG00000099308				67	0	0	80	10	11.1111
RHPN2	0	genome.wustl.edu	37	19	33493166	33493168	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	33493166	33493168	GAG	-	DEL	RHPN2	ENST00000254260	human	ensembl	74_37	-1	known	in_frame_del	c.1092_1090	p.L364in_frame_del	0.968:1.000:1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941				43	0	0	47	8	14.5455
KMT2B	0	genome.wustl.edu	37	19	36210763	36210764	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	36210763	36210764	-	C	INS	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_ins	c.514_515	p.K176fs	0.976:0.976	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				151	0	0	163	23	12.3656
DYRK1B	0	genome.wustl.edu	37	19	40320999	40320999	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	40320999	40320999	G	-	DEL	DYRK1B	ENST00000601972	human	ensembl	74_37	-1	putative	frame_shift_del	c.388	p.H130fs	0.002	NULL	superfamily_Kinase-like_dom	-	no_errors	DYRK1B	HGNC	ENSG00000105204				65	0	0	53	8	13.1148
ERF	0	genome.wustl.edu	37	19	42753368	42753368	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	42753368	42753368	C	-	DEL	ERF	ENST00000222329	human	ensembl	74_37	-1	known	frame_shift_del	c.896	p.G299fs	0.941	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERF	HGNC	ENSG00000105722				23	0	0	29	6	17.1429
CIC	0	genome.wustl.edu	37	19	42791338	42791339	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	42791338	42791339	-	C	INS	CIC	ENST00000575354	human	ensembl	74_37	+1	known	frame_shift_ins	c.398_399	p.G136fs	0.875:0.095	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				32	0	0	61	9	12.8571
MEGF8	0	genome.wustl.edu	37	19	42838298	42838298	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	42838298	42838298	G	-	DEL	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	frame_shift_del	c.491	p.G166fs	1.000	smart_EG-like_dom	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				43	0	0	46	6	11.5385
HDGFRP2	0	genome.wustl.edu	37	19	4491824	4491824	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	4491824	4491824	A	-	DEL	HDGFRP2	ENST00000301284	human	ensembl	74_37	+1	known	frame_shift_del	c.670	p.K226fs	0.997	NULL	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	HDGFRP2	Uniprot_gn	ENSG00000167674				85	0	0	88	20	18.5185
NAPSB	0	genome.wustl.edu	37	19	50837601	50837602	+	RNA	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	50837601	50837602	-	C	INS	NAPSB	ENST00000527780	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.861:0.853	-	-	-	no_errors	NAPSB	HGNC	ENSG00000131401				27	0	0	17	8	32
CACNG7	0	genome.wustl.edu	37	19	54444809	54444809	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	54444809	54444809	T	-	DEL	CACNG7	ENST00000222212	human	ensembl	74_37	+1	known	frame_shift_del	c.510	p.H172fs	0.996	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g7su	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g7su,prints_VDCC_gsu	-	no_errors	CACNG7	HGNC	ENSG00000105605				152	0	0	144	24	14.2857
EPN1	0	genome.wustl.edu	37	19	56206189	56206189	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	56206189	56206189	C	-	DEL	EPN1	ENST00000411543	human	ensembl	74_37	+1	known	frame_shift_del	c.1620	p.P542fs	0.992	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245				23	0	0	20	4	16.6667
FGF22	0	genome.wustl.edu	37	19	643528	643528	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	643528	643528	G	-	DEL	FGF22	ENST00000215530	human	ensembl	74_37	+1	known	frame_shift_del	c.437	p.150fs	0.001	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF22	HGNC	ENSG00000070388				14	0	0	29	5	14.7059
GPR108	0	genome.wustl.edu	37	19	6737533	6737534	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	6737533	6737534	-	C	INS	GPR108	ENST00000264080	human	ensembl	74_37	-1	known	frame_shift_ins	c.55_54	p.Q18fs	0.246:0.396	NULL	pfam_TM_rcpt_euk	-	no_errors	GPR108	HGNC	ENSG00000125734				14	0	0	12	3	20
LPPR3	0	genome.wustl.edu	37	19	813196	813196	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	813196	813196	T	-	DEL	LPPR3	ENST00000359894	human	ensembl	74_37	-1	known	frame_shift_del	c.1615	p.S539fs	0.987	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR3	Uniprot_gn	ENSG00000129951				10	0	0	14	3	17.6471
OR7E24	0	genome.wustl.edu	37	19	9361741	9361741	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	9361741	9361741	T	-	DEL	OR7E24	ENST00000456448	human	ensembl	74_37	+1	known	frame_shift_del	c.22	p.F11fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521				11	0	0	8	6	42.8571
OR7E24	0	genome.wustl.edu	37	19	9362217	9362217	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	19	9362217	9362217	T	-	DEL	OR7E24	ENST00000456448	human	ensembl	74_37	+1	known	frame_shift_del	c.498	p.F168fs	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521				44	0	0	39	13	25
GCC2	0	genome.wustl.edu	37	2	109087884	109087884	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	109087884	109087884	A	-	DEL	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	frame_shift_del	c.2099	p.K702fs	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				177	0	0	99	21	17.5
ENSG00000231731	0	genome.wustl.edu	37	2	128263364	128263366	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	128263364	128263366	AAA	-	DEL	ENSG00000231731	ENST00000599001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.233:0.319:0.309	-	-	-	no_errors	AC010976.2	Clone_based_vega_gene	ENSG00000231731				41	0	0	31	10	24.3902
TPO	0	genome.wustl.edu	37	2	1457590	1457590	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	1457590	1457590	C	-	DEL	TPO	ENST00000329066	human	ensembl	74_37	+1	known	frame_shift_del	c.607	p.P204fs	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				69	0	0	51	11	17.7419
ACVR2A	0	genome.wustl.edu	37	2	148657041	148657041	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	148657041	148657041	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.278	p.D96fs	1.000	pfam_Activin_rcpt,prints_TGFB_receptor	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				96	0	0	61	10	14.0845
TPO	0	genome.wustl.edu	37	2	1507748	1507748	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	1507748	1507748	C	-	DEL	TPO	ENST00000329066	human	ensembl	74_37	+1	known	frame_shift_del	c.2415	p.C808fs	0.002	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				74	0	0	61	8	11.5942
RIF1	0	genome.wustl.edu	37	2	152320541	152320541	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	152320541	152320541	A	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.4507	p.K1505fs	0.001	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				83	0	0	52	9	14.7541
DHRS9	0	genome.wustl.edu	37	2	169938088	169938088	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	169938088	169938088	A	-	DEL	DHRS9	ENST00000432060	human	ensembl	74_37	+1	known	frame_shift_del	c.177	p.M61fs	0.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS9	HGNC	ENSG00000073737				56	0	0	48	9	15.7895
ITGA6	0	genome.wustl.edu	37	2	173337510	173337510	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	173337510	173337510	T	-	DEL	ITGA6	ENST00000264106	human	ensembl	74_37	+1	known	frame_shift_del	c.784	p.L263fs	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409				75	0	0	67	20	22.9885
HECW2	0	genome.wustl.edu	37	2	197085637	197085637	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	197085637	197085637	C	-	DEL	HECW2	ENST00000260983	human	ensembl	74_37	-1	known	frame_shift_del	c.4175	p.G1392fs	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW2	HGNC	ENSG00000138411				141	0	0	118	17	12.5926
GTF3C3	0	genome.wustl.edu	37	2	197649614	197649614	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	197649614	197649614	T	-	DEL	GTF3C3	ENST00000263956	human	ensembl	74_37	-1	known	frame_shift_del	c.1081	p.T361fs	0.044	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041				55	0	0	38	7	15.5556
BMPR2	0	genome.wustl.edu	37	2	203420130	203420130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	203420130	203420130	A	-	DEL	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	frame_shift_del	c.1742	p.N583fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				87	0	0	65	12	15.5844
RAPH1	0	genome.wustl.edu	37	2	204305619	204305619	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	204305619	204305619	G	-	DEL	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	frame_shift_del	c.2450	p.P817fs	0.409	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				91	0	0	111	10	8.26446
ZDBF2	0	genome.wustl.edu	37	2	207174428	207174428	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	207174428	207174428	A	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.5176	p.K1728fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				44	0	0	38	7	15.5556
CRYGD	0	genome.wustl.edu	37	2	208986445	208986445	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	208986445	208986445	G	-	DEL	CRYGD	ENST00000264376	human	ensembl	74_37	-1	known	frame_shift_del	c.477	p.T160fs	0.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGD	HGNC	ENSG00000118231				71	0	0	63	9	12.5
CCDC108	0	genome.wustl.edu	37	2	219883883	219883883	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	219883883	219883883	G	-	DEL	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	frame_shift_del	c.3492	p.V1165fs	0.000	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				103	0	0	83	12	12.6316
SP100	0	genome.wustl.edu	37	2	231379990	231379990	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	231379990	231379990	A	-	DEL	SP100	ENST00000264052	human	ensembl	74_37	+1	known	frame_shift_del	c.2275	p.K761fs	1.000	superfamily_HMG_box_dom	pfam_Sp100,pfam_SAND_dom,pfam_HMG_box_dom,superfamily_SAND_dom-like,superfamily_HMG_box_dom,smart_SAND_dom,smart_HMG_box_dom,pfscan_SAND_dom,pfscan_HMG_box_dom	-	no_errors	SP100	HGNC	ENSG00000067066				90	0	0	80	20	20
MSH6	0	genome.wustl.edu	37	2	48030692	48030692	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	48030692	48030692	T	-	DEL	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	frame_shift_del	c.3306	p.F1104fs	0.298	pfam_DNA_mismatch_repair_MutS_C,superfamily_P-loop_NTPase,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				96	0	0	71	15	17.4419
CCDC88A	0	genome.wustl.edu	37	2	55570930	55570930	+	Splice_Site	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	55570930	55570930	T	-	DEL	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	splice_site_del	c.1189-2	e12-2	1.000	-	-	-	no_errors	CCDC88A	HGNC	ENSG00000115355				25	0	0	13	5	27.7778
USP34	0	genome.wustl.edu	37	2	61633020	61633020	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	61633020	61633020	T	-	DEL	USP34	ENST00000398571	human	ensembl	74_37	-1	known	frame_shift_del	c.375	p.K125fs	0.935	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				56	0	0	34	7	17.0732
MCEE	0	genome.wustl.edu	37	2	71351665	71351665	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	71351665	71351665	A	-	DEL	MCEE	ENST00000244217	human	ensembl	74_37	-1	known	frame_shift_del	c.49	p.S17fs	0.007	NULL	pfam_Glyas_Fos-R_dOase_dom,tigrfam_MeMalonyl-CoA_epimerase	-	no_errors	MCEE	HGNC	ENSG00000124370				94	0	0	55	12	17.9104
INO80B	0	genome.wustl.edu	37	2	74687177	74687180	+	Splice_Site	DEL	GTGA	GTGA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	GTGA	GTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	74687177	74687180	GTGA	-	DEL	INO80B	ENST00000452361	human	ensembl	74_37	+1	known	splice_site_del	c.1092+1_4	e6+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	INO80B	HGNC	ENSG00000115274				101	0	0	84	7	7.69231
KDM3A	0	genome.wustl.edu	37	2	86697368	86697368	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	86697368	86697368	A	-	DEL	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	frame_shift_del	c.1561	p.K522fs	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				89	0	0	87	19	17.9245
GPAT2	0	genome.wustl.edu	37	2	96692041	96692041	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	96692041	96692041	G	-	DEL	GPAT2	ENST00000359548	human	ensembl	74_37	-1	known	frame_shift_del	c.1045	p.L349fs	0.985	NULL	smart_Plipid/glycerol_acylTrfase	-	no_errors	GPAT2	HGNC	ENSG00000186281				30	0	0	33	5	13.1579
SEMA4C	0	genome.wustl.edu	37	2	97526594	97526594	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	97526594	97526594	C	-	DEL	SEMA4C	ENST00000305476	human	ensembl	74_37	-1	known	frame_shift_del	c.2271	p.P759fs	0.994	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4C	HGNC	ENSG00000168758				99	0	0	89	16	15.2381
FAHD2B	0	genome.wustl.edu	37	2	97749725	97749725	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	2	97749725	97749725	G	-	DEL	FAHD2B	ENST00000272610	human	ensembl	74_37	-1	known	frame_shift_del	c.842	p.P281fs	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2B	HGNC	ENSG00000144199				44	0	0	39	5	11.3636
CD93	0	genome.wustl.edu	37	20	23065992	23065992	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	23065992	23065992	C	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	frame_shift_del	c.838	p.D280fs	0.033	pirsf_CD93/CD141,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				217	1	0.458716	233	31	11.7424
FASTKD5	0	genome.wustl.edu	37	20	3128001	3128001	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	3128001	3128001	C	-	DEL	FASTKD5	ENST00000380266	human	ensembl	74_37	-1	known	frame_shift_del	c.1716	p.Q574fs	0.997	pfam_FAST_2	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD5	HGNC	ENSG00000215251				91	0	0	73	15	17.0455
TGIF2	0	genome.wustl.edu	37	20	35219539	35219539	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	35219539	35219539	A	-	DEL	TGIF2	ENST00000373872	human	ensembl	74_37	+1	known	frame_shift_del	c.419	p.K141fs	0.413	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF2	HGNC	ENSG00000118707				99	0	0	79	19	19.3878
DDX27	0	genome.wustl.edu	37	20	47860465	47860465	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	47860465	47860465	A	-	DEL	DDX27	ENST00000471144	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DDX27	HGNC	ENSG00000124228				16	0	0	9	3	25
ADNP	0	genome.wustl.edu	37	20	49508204	49508204	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	49508204	49508204	T	-	DEL	ADNP	ENST00000349014	human	ensembl	74_37	-1	known	frame_shift_del	c.3047	p.K1016fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126				116	1	0.854701	70	28	28.5714
NFATC2	0	genome.wustl.edu	37	20	50139819	50139820	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	50139819	50139820	-	G	INS	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	frame_shift_ins	c.961_960	p.K320fs	1.000:0.994	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096				55	0	0	57	6	9.52381
FAM209A	0	genome.wustl.edu	37	20	55100911	55100911	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	55100911	55100911	A	-	DEL	FAM209A	ENST00000371328	human	ensembl	74_37	+1	known	frame_shift_del	c.301	p.R103fs	0.004	NULL	NULL	-	no_errors	FAM209A	HGNC	ENSG00000124103				138	0	0	108	19	14.9606
CDH26	0	genome.wustl.edu	37	20	58587784	58587784	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	20	58587784	58587784	A	-	DEL	CDH26	ENST00000348616	human	ensembl	74_37	+1	known	frame_shift_del	c.2498	p.*833fs	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				34	0	0	29	6	17.1429
LTN1	0	genome.wustl.edu	37	21	30303519	30303519	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	30303519	30303519	T	-	DEL	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	frame_shift_del	c.5334	p.A1779fs	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				103	0	0	65	14	17.7215
IFNAR1	0	genome.wustl.edu	37	21	34721401	34721401	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	34721401	34721401	T	-	DEL	IFNAR1	ENST00000270139	human	ensembl	74_37	+1	known	frame_shift_del	c.793	p.L266fs	0.004	superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	-	no_errors	IFNAR1	HGNC	ENSG00000142166				70	0	0	44	8	15.3846
PDE9A	0	genome.wustl.edu	37	21	44195538	44195540	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	44195538	44195540	AAA	-	DEL	PDE9A	ENST00000460989	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	PDE9A	HGNC	ENSG00000160191				15	0	0	23	2	8
PTTG1IP	0	genome.wustl.edu	37	21	46275129	46275129	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	21	46275129	46275129	T	-	DEL	PTTG1IP	ENST00000330938	human	ensembl	74_37	-1	known	frame_shift_del	c.492	p.K164fs	1.000	NULL	smart_Plexin-like_fold	-	no_errors	PTTG1IP	HGNC	ENSG00000183255				57	0	0	37	9	19.5652
BPIFC	0	genome.wustl.edu	37	22	32831828	32831829	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	32831828	32831829	-	G	INS	BPIFC	ENST00000300399	human	ensembl	74_37	-1	known	frame_shift_ins	c.787_786	p.F262fs	0.795:0.148	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFC	HGNC	ENSG00000184459				95	0	0	67	12	15.1899
TST	0	genome.wustl.edu	37	22	37407108	37407108	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	22	37407108	37407108	G	-	DEL	TST	ENST00000249042	human	ensembl	74_37	-1	known	frame_shift_del	c.854	p.P285fs	0.995	superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	TST	HGNC	ENSG00000128311				111	0	0	125	14	10.0719
TBC1D23	0	genome.wustl.edu	37	3	100039736	100039736	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	100039736	100039736	A	-	DEL	TBC1D23	ENST00000394144	human	ensembl	74_37	+1	known	frame_shift_del	c.1939	p.K649fs	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054				51	0	0	27	16	37.2093
ENSG00000240057	0	genome.wustl.edu	37	3	112738501	112738502	+	RNA	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	112738501	112738502	-	G	INS	ENSG00000240057	ENST00000460707	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013:0.002	-	-	-	no_errors	RP11-572M11.4	Clone_based_vega_gene	ENSG00000240057				28	0	0	39	10	20.4082
ZBTB20	0	genome.wustl.edu	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	114058003	114058003	G	-	DEL	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	frame_shift_del	c.2075	p.P692fs	0.678	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				74	0	0	72	34	32.0755
MAATS1	0	genome.wustl.edu	37	3	119459480	119459480	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	119459480	119459480	A	-	DEL	MAATS1	ENST00000273390	human	ensembl	74_37	+1	known	frame_shift_del	c.1618	p.A542fs	1.000	NULL	superfamily_S-AdoMet_deCO2ase_core	-	no_errors	MAATS1	HGNC	ENSG00000183833				45	0	0	60	7	10.4478
HSPBAP1	0	genome.wustl.edu	37	3	122459968	122459968	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	122459968	122459968	A	-	DEL	HSPBAP1	ENST00000471534	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSPBAP1	HGNC	ENSG00000169087				53	0	0	44	6	12
ZXDC	0	genome.wustl.edu	37	3	126178522	126178522	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	126178522	126178522	T	-	DEL	ZXDC	ENST00000389709	human	ensembl	74_37	-1	known	frame_shift_del	c.2186	p.K729fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDC	HGNC	ENSG00000070476				489	0	0	451	56	11.0454
TBC1D5	0	genome.wustl.edu	37	3	17300085	17300086	+	Splice_Site	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	17300085	17300086	-	A	INS	TBC1D5	ENST00000253692	human	ensembl	74_37	-1	known	splice_site_ins	c.1246-3_1246-2	e14-2	1.000:0.995	-	-	-	no_errors	TBC1D5	HGNC	ENSG00000131374				63	0	0	54	8	12.9032
ABCC5	0	genome.wustl.edu	37	3	183665257	183665257	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	183665257	183665257	A	-	DEL	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	frame_shift_del	c.3269	p.L1090fs	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770				33	0	0	33	5	13.1579
TNK2	0	genome.wustl.edu	37	3	195595228	195595229	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	195595228	195595229	-	G	INS	TNK2	ENST00000381916	human	ensembl	74_37	-1	known	frame_shift_ins	c.2130_2129	p.P711fs	0.449:0.994	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cdc42_binding_dom_like,pfam_Inhibitor_Mig-6,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	TNK2	HGNC	ENSG00000061938				59	0	0	102	11	9.73451
SGOL1	0	genome.wustl.edu	37	3	20212755	20212755	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	20212755	20212755	A	-	DEL	SGOL1	ENST00000460637	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SGOL1	HGNC	ENSG00000129810				35	0	0	27	8	22.8571
XIRP1	0	genome.wustl.edu	37	3	39227344	39227344	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	39227344	39227344	C	-	DEL	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	frame_shift_del	c.3593	p.G1198fs	0.040	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				63	0	0	53	5	8.62069
KIF9	0	genome.wustl.edu	37	3	47316957	47316957	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	47316957	47316957	T	-	DEL	KIF9	ENST00000265529	human	ensembl	74_37	-1	known	frame_shift_del	c.117	p.D40fs	0.993	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727				64	0	0	44	11	20
PBRM1	0	genome.wustl.edu	37	3	52682400	52682400	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	52682400	52682400	T	-	DEL	PBRM1	ENST00000296302	human	ensembl	74_37	-1	known	frame_shift_del	c.773	p.N258fs	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,pfam_BAH_dom,pfam_HMG_box_dom,superfamily_Bromodomain,superfamily_HMG_box_dom,smart_Bromodomain,smart_BAH_dom,smart_HMG_box_dom,pfscan_BAH_dom,pfscan_HMG_box_dom,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	PBRM1	HGNC	ENSG00000163939				89	0	0	70	7	9.09091
OXTR	0	genome.wustl.edu	37	3	8809115	8809115	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	3	8809115	8809115	C	-	DEL	OXTR	ENST00000316793	human	ensembl	74_37	-1	known	frame_shift_del	c.759	p.R254fs	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Oxytocn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Oxytocn_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OXTR	HGNC	ENSG00000180914				25	0	0	34	13	27.6596
ADH6	0	genome.wustl.edu	37	4	100129893	100129895	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	100129893	100129895	CTT	-	DEL	ADH6	ENST00000394899	human	ensembl	74_37	-1	known	in_frame_del	c.760_758	p.E253in_frame_del	0.995:0.877:0.861	pfam_ADH_C,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH6	HGNC	ENSG00000172955				332	0	0	276	42	13.2075
FHDC1	0	genome.wustl.edu	37	4	153864507	153864507	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	153864507	153864507	T	-	DEL	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	frame_shift_del	c.298	p.W102fs	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				182	0	0	126	26	17.1053
MAP9	0	genome.wustl.edu	37	4	156273868	156273869	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	156273868	156273869	-	T	INS	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	frame_shift_ins	c.1701_1700	p.E568fs	1.000:1.000	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114				23	0	0	22	5	18.5185
FNIP2	0	genome.wustl.edu	37	4	159782571	159782571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	159782571	159782571	A	-	DEL	FNIP2	ENST00000379346	human	ensembl	74_37	+1	known	frame_shift_del	c.1295	p.N434fs	1.000	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795				34	0	0	46	7	13.2075
FNIP2	0	genome.wustl.edu	37	4	159789993	159789994	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	159789993	159789994	-	A	INS	FNIP2	ENST00000379346	human	ensembl	74_37	+1	known	frame_shift_ins	c.2274_2275	p.M760fs	0.000:0.000	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795				102	0	0	90	13	12.6214
NEK1	0	genome.wustl.edu	37	4	170428879	170428880	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	170428879	170428880	-	T	INS	NEK1	ENST00000507142	human	ensembl	74_37	-1	known	frame_shift_ins	c.1898_1897	p.I633fs	0.407:0.650	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601				39	0	0	47	5	9.61538
WWC2	0	genome.wustl.edu	37	4	184166575	184166576	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	184166575	184166576	-	A	INS	WWC2	ENST00000448232	human	ensembl	74_37	+1	known	frame_shift_ins	c.609_610	p.M205fs	1.000:1.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC2	HGNC	ENSG00000151718				18	0	0	9	3	25
RGS12	0	genome.wustl.edu	37	4	3430399	3430399	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	3430399	3430399	A	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.3526	p.K1178fs	1.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				71	0	0	37	7	15.9091
PHOX2B	0	genome.wustl.edu	37	4	41747938	41747938	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	41747938	41747938	G	-	DEL	PHOX2B	ENST00000226382	human	ensembl	74_37	-1	known	frame_shift_del	c.831	p.G278fs	0.966	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1	-	no_errors	PHOX2B	HGNC	ENSG00000109132				22	0	0	31	4	11.4286
ATP10D	0	genome.wustl.edu	37	4	47559697	47559698	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	47559697	47559698	-	G	INS	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	frame_shift_ins	c.1841_1842	p.L617fs	0.449:0.439	superfamily_HAD-like_dom	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				51	0	0	49	4	7.54717
PPAT	0	genome.wustl.edu	37	4	57265465	57265465	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	57265465	57265465	T	-	DEL	PPAT	ENST00000264220	human	ensembl	74_37	-1	known	frame_shift_del	c.1116	p.K372fs	1.000	pfam_PRibTrfase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	pfam_GATase_dom,pfam_PRibTrfase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	-	no_errors	PPAT	HGNC	ENSG00000128059				105	1	0.943396	62	17	21.519
ABLIM2	0	genome.wustl.edu	37	4	8089995	8089996	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	8089995	8089996	-	G	INS	ABLIM2	ENST00000447017	human	ensembl	74_37	-1	known	frame_shift_ins	c.355_354	p.G118fs	1.000:0.001	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995				18	0	0	34	3	8.10811
RASGEF1B	0	genome.wustl.edu	37	4	82363492	82363492	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	82363492	82363492	T	-	DEL	RASGEF1B	ENST00000264400	human	ensembl	74_37	-1	known	frame_shift_del	c.967	p.T323fs	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1B	HGNC	ENSG00000138670				66	0	0	43	8	15.6863
SEC31A	0	genome.wustl.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	83785565	83785565	T	-	DEL	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	frame_shift_del	c.1384	p.I462fs	0.985	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674				49	0	0	38	19	33.3333
ACOX3	0	genome.wustl.edu	37	4	8407708	8407708	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	8407708	8407708	T	-	DEL	ACOX3	ENST00000356406	human	ensembl	74_37	-1	known	frame_shift_del	c.750	p.K250fs	0.939	superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008				239	0	0	179	26	12.6829
HELQ	0	genome.wustl.edu	37	4	84374584	84374584	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	4	84374584	84374584	T	-	DEL	HELQ	ENST00000295488	human	ensembl	74_37	-1	known	frame_shift_del	c.812	p.N271fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312				156	0	0	118	23	16.3121
ZCCHC10	0	genome.wustl.edu	37	5	132335884	132335884	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	132335884	132335884	A	-	DEL	ZCCHC10	ENST00000513541	human	ensembl	74_37	-1	putative	frame_shift_del	c.279	p.P95fs	0.000	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC10	HGNC	ENSG00000155329				48	0	0	37	8	17.7778
SPOCK1	0	genome.wustl.edu	37	5	136476321	136476322	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	136476321	136476322	-	CA	INS	SPOCK1	ENST00000282223	human	ensembl	74_37	-1	known	frame_shift_ins	c.295_294	p.T98fs	0.999:0.989	NULL	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK1	HGNC	ENSG00000152377				33	0	0	43	5	10.4167
DNAH5	0	genome.wustl.edu	37	5	13751371	13751371	+	Splice_Site	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	13751371	13751371	T	-	DEL	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	splice_site_del	c.11029-2	e65-2	0.985	-	-	-	no_errors	DNAH5	HGNC	ENSG00000039139				34	0	0	9	5	35.7143
SLC4A9	0	genome.wustl.edu	37	5	139740384	139740384	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	139740384	139740384	A	-	DEL	SLC4A9	ENST00000230993	human	ensembl	74_37	+1	known	frame_shift_del	c.290	p.H97fs	0.000	superfamily_PTrfase/Anion_transptr	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073				31	0	0	28	9	24.3243
PCDHGC5	0	genome.wustl.edu	37	5	140870531	140870531	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	140870531	140870531	C	-	DEL	PCDHGC5	ENST00000252087	human	ensembl	74_37	+1	known	frame_shift_del	c.1724	p.Q577fs	0.194	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764				76	0	0	81	12	12.9032
RBM27	0	genome.wustl.edu	37	5	145647320	145647320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	145647320	145647320	A	-	DEL	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	frame_shift_del	c.2440	p.K816fs	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				74	0	0	42	13	23.6364
TCERG1	0	genome.wustl.edu	37	5	145886723	145886723	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	145886723	145886723	A	-	DEL	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	frame_shift_del	c.2863	p.K957fs	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				98	0	0	75	16	17.5824
HMMR	0	genome.wustl.edu	37	5	162917426	162917426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	162917426	162917426	A	-	DEL	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	frame_shift_del	c.1993	p.K667fs	1.000	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571				77	0	0	45	7	13.4615
LCP2	0	genome.wustl.edu	37	5	169677853	169677853	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	169677853	169677853	T	-	DEL	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	frame_shift_del	c.1360	p.T454fs	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462				45	0	0	30	5	14.2857
C5orf45	0	genome.wustl.edu	37	5	179280382	179280382	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	179280382	179280382	A	-	DEL	C5orf45	ENST00000292586	human	ensembl	74_37	-1	known	frame_shift_del	c.122	p.L41fs	0.818	NULL	NULL	-	no_errors	C5orf45	HGNC	ENSG00000161010				64	0	0	68	14	17.0732
PDZD2	0	genome.wustl.edu	37	5	31799656	31799657	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	31799656	31799657	-	G	INS	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	frame_shift_ins	c.301_302	p.K104fs	1.000:1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				116	0	0	103	14	11.9658
GPBP1	0	genome.wustl.edu	37	5	56545258	56545260	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	56545258	56545260	CTC	-	DEL	GPBP1	ENST00000424459	human	ensembl	74_37	+1	known	in_frame_del	c.887_889	p.P297in_frame_del	1.000:0.950:1.000	NULL	NULL	-	no_errors	GPBP1	HGNC	ENSG00000062194				64	0	0	42	13	23.6364
MARVELD2	0	genome.wustl.edu	37	5	68728813	68728813	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	68728813	68728813	T	-	DEL	MARVELD2	ENST00000325631	human	ensembl	74_37	+1	known	frame_shift_del	c.1396	p.S467fs	1.000	pfam_Occludin_RNApol2_elong_fac_ELL	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel	-	no_errors	MARVELD2	HGNC	ENSG00000152939				129	0	0	105	22	17.3228
OTP	0	genome.wustl.edu	37	5	76932989	76932989	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	76932989	76932989	C	-	DEL	OTP	ENST00000306422	human	ensembl	74_37	-1	known	frame_shift_del	c.104	p.G35fs	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_HTH_motif,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	OTP	HGNC	ENSG00000171540				13	0	0	24	3	11.1111
MSH3	0	genome.wustl.edu	37	5	79970915	79970915	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	5	79970915	79970915	A	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.1141	p.K383fs	0.982	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				160	1	0.621118	96	17	15.0442
ASCC3	0	genome.wustl.edu	37	6	101296336	101296336	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	101296336	101296336	A	-	DEL	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	frame_shift_del	c.489	p.F163fs	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				66	0	0	41	6	12.766
SEC63	0	genome.wustl.edu	37	6	108214755	108214755	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	108214755	108214755	T	-	DEL	SEC63	ENST00000369002	human	ensembl	74_37	-1	known	frame_shift_del	c.1605	p.K535fs	0.959	superfamily_ARM-type_fold,smart_Sec63-dom	pfam_Sec63-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_ARM-type_fold,smart_DnaJ_domain,smart_Sec63-dom,prints_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	SEC63	HGNC	ENSG00000025796				95	0	0	75	7	8.53659
ENSG00000271730	0	genome.wustl.edu	37	6	109319968	109319969	+	RNA	DEL	AA	AA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	109319968	109319969	AA	-	DEL	ENSG00000271730	ENST00000605885	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-787I22.3	Clone_based_vega_gene	ENSG00000271730				51	0	0	49	9	15.5172
HIVEP1	0	genome.wustl.edu	37	6	12089462	12089463	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	12089462	12089463	-	A	INS	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	frame_shift_ins	c.86_87	p.E32fs	1.000:0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				51	0	0	32	8	20
NCOA7	0	genome.wustl.edu	37	6	126176317	126176317	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	126176317	126176317	A	-	DEL	NCOA7	ENST00000368357	human	ensembl	74_37	+1	known	frame_shift_del	c.202	p.K70fs	1.000	NULL	pfam_TLDc,pfam_LysM_dom,pfam_GRAM,smart_LysM_dom,smart_TLDc	-	no_errors	NCOA7	HGNC	ENSG00000111912				155	0	0	105	16	13.2231
AKAP7	0	genome.wustl.edu	37	6	131481276	131481276	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	131481276	131481276	A	-	DEL	AKAP7	ENST00000368123	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.K57fs	0.449	pfam_Kinase-A_anchor_nucl_local_sig	pfam_Kinase-A_anchor_nucl_local_sig,pfam_Kinase-A_anchor_RI-RII-bd_dom,superfamily_RNA_ligase/cNuc_Pdiesterase	-	no_errors	AKAP7	HGNC	ENSG00000118507				58	0	0	38	9	19.1489
ENPP3	0	genome.wustl.edu	37	6	132054763	132054766	+	Frame_Shift_Del	DEL	CTGT	CTGT	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CTGT	CTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	132054763	132054766	CTGT	-	DEL	ENPP3	ENST00000357639	human	ensembl	74_37	+1	known	frame_shift_del	c.1989_1992	p.L665fs	1.000:1.000:1.000:1.000	smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269				76	0	0	79	10	11.236
JARID2	0	genome.wustl.edu	37	6	15497226	15497226	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	15497226	15497226	C	-	DEL	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	frame_shift_del	c.1770	p.P592fs	1.000	smart_TF_JmjN,pfscan_TF_JmjN	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				36	0	0	32	4	11.1111
TIAM2	0	genome.wustl.edu	37	6	155450831	155450831	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	155450831	155450831	C	-	DEL	TIAM2	ENST00000456144	human	ensembl	74_37	+1	known	frame_shift_del	c.474	p.R160fs	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,superfamily_HR1_rho-bd,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM2	HGNC	ENSG00000146426				64	0	0	57	10	14.9254
WTAP	0	genome.wustl.edu	37	6	160157395	160157395	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	160157395	160157395	A	-	DEL	WTAP	ENST00000494513	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WTAP	HGNC	ENSG00000146457				39	0	0	25	9	26.4706
FGFR1OP	0	genome.wustl.edu	37	6	167413537	167413537	+	RNA	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	167413537	167413537	T	-	DEL	FGFR1OP	ENST00000476078	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FGFR1OP	HGNC	ENSG00000213066				45	0	0	45	9	16.6667
SMOC2	0	genome.wustl.edu	37	6	169053728	169053728	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	169053728	169053728	A	-	DEL	SMOC2	ENST00000354536	human	ensembl	74_37	+1	known	frame_shift_del	c.1138	p.K381fs	1.000	pfam_SPARC/Testican_Ca-bd-dom,pfscan_EF_hand_dom	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_EF_hand_dom,pfscan_Thyroglobulin_1	-	no_errors	SMOC2	HGNC	ENSG00000112562				75	0	0	50	12	19.3548
RBM24	0	genome.wustl.edu	37	6	17292449	17292449	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	17292449	17292449	A	-	DEL	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.915	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				35	0	0	30	11	26.8293
GPX5	0	genome.wustl.edu	37	6	28502011	28502011	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	28502011	28502011	A	-	DEL	GPX5	ENST00000442674	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPX5	HGNC	ENSG00000224586				11	0	0	12	9	42.8571
PPP1R10	0	genome.wustl.edu	37	6	30570264	30570269	+	In_Frame_Del	DEL	GGAGGA	GGAGGA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	GGAGGA	GGAGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	30570264	30570269	GGAGGA	-	DEL	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	in_frame_del	c.2162_2157	p.PP720in_frame_del	0.990:0.999:0.997:0.979:0.982:0.980	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				83	0	0	81	12	12.9032
ATAT1	0	genome.wustl.edu	37	6	30610619	30610619	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	30610619	30610619	C	-	DEL	ATAT1	ENST00000376485	human	ensembl	74_37	+1	known	frame_shift_del	c.799	p.R269fs	1.000	NULL	pfam_Alpha-TAT,superfamily_Acyl_CoA_acyltransferase	-	no_errors	ATAT1	HGNC	ENSG00000137343				17	0	0	31	11	26.1905
SLC44A4	0	genome.wustl.edu	37	6	31832357	31832360	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	31832357	31832360	AAAA	-	DEL	SLC44A4	ENST00000487680	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.055:0.066:0.070:0.080	-	-	-	no_errors	SLC44A4	HGNC	ENSG00000204385				40	0	0	44	9	16.9811
FANCE	0	genome.wustl.edu	37	6	35425714	35425715	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	35425714	35425715	-	C	INS	FANCE	ENST00000229769	human	ensembl	74_37	+1	known	frame_shift_ins	c.922_923	p.V311fs	0.000:0.000	pfam_Fanconi_anaemia_gr_E_prot_C	pfam_Fanconi_anaemia_gr_E_prot_C	-	no_errors	FANCE	HGNC	ENSG00000112039				70	0	0	68	15	18.0723
C6orf89	0	genome.wustl.edu	37	6	36867370	36867371	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	36867370	36867371	-	C	INS	C6orf89	ENST00000355190	human	ensembl	74_37	+1	known	frame_shift_ins	c.171_172	p.Q60fs	0.997:0.991	NULL	NULL	-	no_errors	C6orf89	HGNC	ENSG00000198663				66	0	0	63	11	14.8649
CDYL	0	genome.wustl.edu	37	6	4892244	4892244	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	4892244	4892244	A	-	DEL	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	frame_shift_del	c.484	p.N163fs	0.898	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046				104	0	0	95	18	15.9292
GCLC	0	genome.wustl.edu	37	6	53387262	53387262	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	53387262	53387262	C	-	DEL	GCLC	ENST00000229416	human	ensembl	74_37	-1	known	frame_shift_del	c.214	p.E72fs	0.999	NULL	pfam_GCS	-	no_errors	GCLC	HGNC	ENSG00000001084				114	0	0	81	11	11.9565
DST	0	genome.wustl.edu	37	6	56422266	56422266	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	56422266	56422266	G	-	DEL	DST	ENST00000370754	human	ensembl	74_37	-1	known	frame_shift_del	c.14398	p.L4800fs	1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				56	0	0	29	5	14.7059
OGFRL1	0	genome.wustl.edu	37	6	72011492	72011492	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	72011492	72011492	A	-	DEL	OGFRL1	ENST00000370435	human	ensembl	74_37	+1	known	frame_shift_del	c.1096	p.V368fs	0.721	NULL	pfam_OGF_rcpt	-	no_errors	OGFRL1	HGNC	ENSG00000119900				68	0	0	55	12	17.9104
TTK	0	genome.wustl.edu	37	6	80720630	80720630	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	80720630	80720630	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.569	p.K192fs	0.007	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				95	0	0	64	15	18.9873
KIAA1009	0	genome.wustl.edu	37	6	84896232	84896233	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	6	84896232	84896233	-	A	INS	KIAA1009	ENST00000403245	human	ensembl	74_37	-1	known	frame_shift_ins	c.1219_1218	p.D406fs	0.000:0.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315				113	0	0	69	14	16.8675
TRIM56	0	genome.wustl.edu	37	7	100732113	100732113	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	100732113	100732113	C	-	DEL	TRIM56	ENST00000306085	human	ensembl	74_37	+1	known	frame_shift_del	c.1520	p.R509fs	0.419	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871				131	0	0	151	25	14.2045
CUX1	0	genome.wustl.edu	37	7	101839973	101839974	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	101839973	101839974	-	C	INS	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	frame_shift_ins	c.1315_1316	p.P442fs	1.000:1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				112	0	0	109	12	9.91736
BCAP29	0	genome.wustl.edu	37	7	107234540	107234540	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	107234540	107234540	T	-	DEL	BCAP29	ENST00000379119	human	ensembl	74_37	+1	known	frame_shift_del	c.334	p.W114fs	1.000	pfam_Bap31	pfam_Bap31	-	no_errors	BCAP29	HGNC	ENSG00000075790				51	0	0	37	10	21.2766
MET	0	genome.wustl.edu	37	7	116399408	116399409	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	116399408	116399409	CT	-	DEL	MET	ENST00000318493	human	ensembl	74_37	+1	known	frame_shift_del	c.2282_2283	p.L762fs	0.013:0.170	pirsf_Tyr_kinase_HGF/MSP_rcpt,superfamily_Ig_E-set,smart_IPT	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976				16	0	0	17	6	26.087
CTTNBP2	0	genome.wustl.edu	37	7	117424457	117424458	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	117424457	117424458	-	G	INS	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	frame_shift_ins	c.2120_2119	p.L707fs	1.000:1.000	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				111	0	0	132	18	12
CPA5	0	genome.wustl.edu	37	7	130007804	130007805	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	130007804	130007805	-	T	INS	CPA5	ENST00000355388	human	ensembl	74_37	+1	known	frame_shift_ins	c.1096_1097	p.G368fs	0.048:0.018	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA5	HGNC	ENSG00000158525				58	0	0	60	19	24.0506
TAS2R38	0	genome.wustl.edu	37	7	141673001	141673001	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	141673001	141673001	A	-	DEL	TAS2R38	ENST00000547270	human	ensembl	74_37	-1	known	frame_shift_del	c.489	p.F163fs	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R38	HGNC	ENSG00000257138				42	0	0	29	7	19.4444
TAS2R41	0	genome.wustl.edu	37	7	143175406	143175407	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	143175406	143175407	-	T	INS	TAS2R41	ENST00000408916	human	ensembl	74_37	+1	known	frame_shift_ins	c.441_442	p.W149fs	0.006:0.499	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R41	HGNC	ENSG00000221855				52	0	0	45	11	19.6429
CUL1	0	genome.wustl.edu	37	7	148464766	148464767	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	148464766	148464767	-	A	INS	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	frame_shift_ins	c.1008_1009	p.L338fs	1.000:1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				82	0	0	50	7	12.2807
KMT2C	0	genome.wustl.edu	37	7	151874148	151874148	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	151874148	151874148	T	-	DEL	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_del	c.8390	p.K2797fs	0.019	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				77	0	0	38	8	17.3913
TNRC18	0	genome.wustl.edu	37	7	5391564	5391564	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	5391564	5391564	G	-	DEL	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	frame_shift_del	c.5356	p.R1786fs	0.971	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				36	0	0	45	7	13.4615
ICA1	0	genome.wustl.edu	37	7	8198251	8198251	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	8198251	8198251	T	-	DEL	ICA1	ENST00000422063	human	ensembl	74_37	-1	known	frame_shift_del	c.611	p.N204fs	1.000	pfam_AH_dom,pfscan_AH_dom	pfam_AH_dom,pfam_Islet_autoAg_Ica1_C,pfscan_AH_dom	-	no_errors	ICA1	HGNC	ENSG00000003147				57	0	0	36	7	16.2791
ABCB1	0	genome.wustl.edu	37	7	87145866	87145866	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	7	87145866	87145866	T	-	DEL	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	frame_shift_del	c.3043	p.T1015fs	0.000	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				95	0	0	82	11	11.828
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				97	0	0	80	21	20.7921
FDFT1	0	genome.wustl.edu	37	8	11696164	11696164	+	RNA	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	11696164	11696164	T	-	DEL	FDFT1	ENST00000446331	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FDFT1	HGNC	ENSG00000079459				31	0	0	27	8	22.8571
LONRF1	0	genome.wustl.edu	37	8	12589275	12589276	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	12589275	12589276	-	T	INS	LONRF1	ENST00000398246	human	ensembl	74_37	-1	known	frame_shift_ins	c.1658_1657	p.I553fs	1.000:1.000	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF1	HGNC	ENSG00000154359				29	0	0	25	6	19.3548
ADAM28	0	genome.wustl.edu	37	8	24167472	24167473	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	24167472	24167473	-	A	INS	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	frame_shift_ins	c.216_217	p.N74fs	1.000:1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980				64	0	0	67	6	8.21918
MCPH1	0	genome.wustl.edu	37	8	6302639	6302639	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	6302639	6302639	A	-	DEL	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	frame_shift_del	c.1396	p.T468fs	0.010	pfam_Microcephalin	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				68	0	0	88	16	15.3846
ANGPT2	0	genome.wustl.edu	37	8	6378797	6378798	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	6378797	6378798	-	T	INS	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	frame_shift_ins	c.701_700	p.I234fs	0.159:0.004	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				81	0	0	50	12	19.3548
ZFHX4	0	genome.wustl.edu	37	8	77775599	77775599	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	77775599	77775599	A	-	DEL	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_del	c.9649	p.E3219fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				77	0	0	81	9	10
ESRP1	0	genome.wustl.edu	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	95686611	95686611	A	-	DEL	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	frame_shift_del	c.1528	p.N512fs	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				68	0	0	76	9	10.5882
CPQ	0	genome.wustl.edu	37	8	97797118	97797118	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	8	97797118	97797118	A	-	DEL	CPQ	ENST00000525310	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CPQ	HGNC	ENSG00000104324				51	0	0	44	7	13.7255
INVS	0	genome.wustl.edu	37	9	103054983	103054983	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	103054983	103054983	G	-	DEL	INVS	ENST00000262457	human	ensembl	74_37	+1	known	frame_shift_del	c.2444	p.E817fs	0.977	NULL	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				63	0	0	63	13	17.1053
CTNNAL1	0	genome.wustl.edu	37	9	111761499	111761499	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	111761499	111761499	T	-	DEL	CTNNAL1	ENST00000325551	human	ensembl	74_37	-1	known	frame_shift_del	c.179	p.K60fs	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	-	no_errors	CTNNAL1	HGNC	ENSG00000119326				138	0	0	101	17	14.4068
TYRP1	0	genome.wustl.edu	37	9	12708068	12708068	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	12708068	12708068	C	-	DEL	TYRP1	ENST00000388918	human	ensembl	74_37	+1	known	frame_shift_del	c.1333	p.P446fs	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165				52	0	0	35	5	12.5
PRRC2B	0	genome.wustl.edu	37	9	134366905	134366905	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	134366905	134366905	G	-	DEL	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	frame_shift_del	c.6319	p.A2108fs	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				29	0	0	42	7	14.2857
POMT1	0	genome.wustl.edu	37	9	134381926	134381926	+	RNA	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	134381926	134381926	T	-	DEL	POMT1	ENST00000483472	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	POMT1	HGNC	ENSG00000130714				44	0	0	29	8	21.6216
SETX	0	genome.wustl.edu	37	9	135158548	135158549	+	RNA	DEL	AA	AA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	135158548	135158549	AA	-	DEL	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.003	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				14	0	0	10	6	37.5
CBWD1	0	genome.wustl.edu	37	9	146222	146222	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	146222	146222	A	-	DEL	CBWD1	ENST00000475411	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785				106	0	0	56	9	13.8462
PSIP1	0	genome.wustl.edu	37	9	15472612	15472612	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	15472612	15472612	A	-	DEL	PSIP1	ENST00000495873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985				49	0	0	27	14	34.1463
CCDC171	0	genome.wustl.edu	37	9	15744289	15744290	+	In_Frame_Ins	INS	-	-	AAA			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	15744289	15744290	-	AAA	INS	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	in_frame_ins	c.2068_2069	p.692in_frame_insK	1.000:1.000	superfamily_STAT_TF_coiled-coil	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				44	0	0	25	9	26.4706
MLLT3	0	genome.wustl.edu	37	9	20346378	20346380	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	20346378	20346380	AAA	-	DEL	MLLT3	ENST00000380323	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.966:0.950:0.903	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843				25	0	0	10	2	16.6667
RECK	0	genome.wustl.edu	37	9	36112460	36112461	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	36112460	36112461	-	A	INS	RECK	ENST00000377966	human	ensembl	74_37	+1	known	frame_shift_ins	c.2047_2048	p.N685fs	0.988:0.002	NULL	pfam_Kazal_dom,superfamily_Prot_inh_PMP,smart_Kazal_dom	-	no_errors	RECK	HGNC	ENSG00000122707				50	0	0	40	10	20
DAPK1	0	genome.wustl.edu	37	9	90321802	90321802	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	90321802	90321802	G	-	DEL	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	frame_shift_del	c.3891	p.Y1300fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				78	0	0	77	7	8.33333
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				11	0	0	15	2	11.7647
TAF7L	0	genome.wustl.edu	37	X	100538467	100538467	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	100538467	100538467	T	-	DEL	TAF7L	ENST00000372907	human	ensembl	74_37	-1	known	frame_shift_del	c.508	p.T170fs	1.000	pfam_TAFII55_prot_cons_reg	pfam_TAFII55_prot_cons_reg	-	no_errors	TAF7L	HGNC	ENSG00000102387				229	0	0	136	33	19.5266
MORC4	0	genome.wustl.edu	37	X	106243199	106243199	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	106243199	106243199	T	-	DEL	MORC4	ENST00000355610	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131				46	0	0	72	13	15.2941
ZCCHC12	0	genome.wustl.edu	37	X	117960135	117960136	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	117960135	117960136	-	C	INS	ZCCHC12	ENST00000310164	human	ensembl	74_37	+1	known	frame_shift_ins	c.928_929	p.H312fs	0.987:0.977	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460				207	0	0	169	32	15.9204
CT47B1	0	genome.wustl.edu	37	X	120009498	120009499	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	120009498	120009499	-	G	INS	CT47B1	ENST00000371311	human	ensembl	74_37	-1	known	frame_shift_ins	c.27_26	p.T10fs	0.000:0.000	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446				158	0	0	202	20	9.00901
GPM6B	0	genome.wustl.edu	37	X	13791023	13791024	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	13791023	13791024	-	T	INS	GPM6B	ENST00000316715	human	ensembl	74_37	-1	known	frame_shift_ins	c.964_963	p.E321fs	1.000:1.000	NULL	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6B	HGNC	ENSG00000046653				118	0	0	82	19	18.8119
ASB9	0	genome.wustl.edu	37	X	15288001	15288002	+	RNA	DEL	CT	CT	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	15288001	15288002	CT	-	DEL	ASB9	ENST00000470015	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	ASB9	HGNC	ENSG00000102048				82	0	0	61	18	22.7848
IRAK1	0	genome.wustl.edu	37	X	153281967	153281967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	153281967	153281967	C	-	DEL	IRAK1	ENST00000369980	human	ensembl	74_37	-1	known	frame_shift_del	c.1157	p.G386fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216				71	0	0	63	16	20.2532
DKC1	0	genome.wustl.edu	37	X	153995316	153995316	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	153995316	153995316	G	-	DEL	DKC1	ENST00000369550	human	ensembl	74_37	+1	known	frame_shift_del	c.493	p.T167fs	1.000	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_PsdUridine_synth_B_fam	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_tRNA_PsdUridine_synth_B_fam,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826				127	0	0	87	18	17.1429
DMD	0	genome.wustl.edu	37	X	32361292	32361293	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	32361292	32361293	-	T	INS	DMD	ENST00000357033	human	ensembl	74_37	-1	known	frame_shift_ins	c.5698_5697	p.L1899fs	1.000:1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				105	0	0	89	11	11
DMD	0	genome.wustl.edu	37	X	33229458	33229458	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	33229458	33229458	A	-	DEL	DMD	ENST00000463609	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	DMD	HGNC	ENSG00000198947				24	0	0	26	4	13.3333
CHDC2	0	genome.wustl.edu	37	X	36122660	36122661	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	36122660	36122661	-	C	INS	CHDC2	ENST00000313548	human	ensembl	74_37	+1	known	frame_shift_ins	c.897_898	p.I301fs	0.007:0.019	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain	-	no_errors	CHDC2	HGNC	ENSG00000176034				118	0	0	61	11	15.2778
SRPX	0	genome.wustl.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	38079976	38079978	GCA	-	DEL	SRPX	ENST00000378533	human	ensembl	74_37	-1	known	in_frame_del	c.70_68	p.L23in_frame_del	0.000:0.001:0.002	NULL	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX	HGNC	ENSG00000101955				11	0	0	4	3	42.8571
GPR82	0	genome.wustl.edu	37	X	41586415	41586415	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	41586415	41586415	A	-	DEL	GPR82	ENST00000302548	human	ensembl	74_37	+1	known	frame_shift_del	c.136	p.T48fs	0.946	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR82	HGNC	ENSG00000171657				72	0	0	50	8	13.7931
ARHGEF9	0	genome.wustl.edu	37	X	62885799	62885801	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	62885799	62885801	GAA	-	DEL	ARHGEF9	ENST00000253401	human	ensembl	74_37	-1	known	in_frame_del	c.1023_1021	p.F341in_frame_del	1.000:1.000:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089				35	0	0	43	9	17.3077
AMER1	0	genome.wustl.edu	37	X	63412648	63412648	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	63412648	63412648	A	-	DEL	AMER1	ENST00000330258	human	ensembl	74_37	-1	known	frame_shift_del	c.519	p.F173fs	0.899	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER1	HGNC	ENSG00000184675				109	0	0	103	18	14.876
STARD8	0	genome.wustl.edu	37	X	67942266	67942267	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	67942266	67942267	-	C	INS	STARD8	ENST00000374599	human	ensembl	74_37	+1	known	frame_shift_ins	c.2577_2578	p.Q860fs	0.920:1.000	superfamily_Rho_GTPase_activation_prot	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052				15	0	0	26	3	10.3448
DLG3	0	genome.wustl.edu	37	X	69671817	69671818	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	69671817	69671818	-	C	INS	DLG3	ENST00000194900	human	ensembl	74_37	+1	known	frame_shift_ins	c.1140_1141	p.T382fs	0.987:1.000	pfam_PDZ_assoc,pirsf_M-assoc_guanylate_kinase	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG3	HGNC	ENSG00000082458				57	0	0	47	7	12.963
XIST	0	genome.wustl.edu	37	X	73071762	73071762	+	RNA	DEL	A	A	-			TCGA-BR-8382-01A-11D-2394-08	TCGA-BR-8382-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe42ed1d-e913-4214-a3a4-7baf5288dbb7	a0801674-6113-406a-af1c-7e4f6c61d55f	X	73071762	73071762	A	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.649	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				128	1	0.775194	79	9	10.2273
