Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ASTN1	0	genome.wustl.edu	37	1	176838101	176838101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	1	176838101	176838101	C	T	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	missense	c.3550	p.A1184T	1.000	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				84	0	0	103	7	6.36364
SIPA1L2	0	genome.wustl.edu	37	1	232551275	232551275	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	1	232551275	232551275	C	A	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.4727	p.W1576L	1.000	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				103	0	0	118	11	8.52713
RGS7	0	genome.wustl.edu	37	1	240975337	240975337	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	1	240975337	240975337	T	G	SNP	RGS7	ENST00000407727	human	ensembl	74_37	-1	known	missense	c.963	p.E321D	1.000	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS7	HGNC	ENSG00000182901				100	1	0.990099	98	7	6.66667
OR2M5	0	genome.wustl.edu	37	1	248308867	248308867	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	1	248308867	248308867	A	G	SNP	OR2M5	ENST00000366476	human	ensembl	74_37	+1	known	missense	c.418	p.I140V	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727				404	0	0	385	31	7.45192
CHD5	0	genome.wustl.edu	37	1	6209393	6209393	+	Silent	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	1	6209393	6209393	G	A	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	silent	c.1074	p.C358	0.902	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				39	0	0	57	7	10.9375
HIF1AN	0	genome.wustl.edu	37	10	102305759	102305759	+	Silent	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	10	102305759	102305759	C	T	SNP	HIF1AN	ENST00000299163	human	ensembl	74_37	+1	known	silent	c.783	p.Y261	0.999	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HIF1AN	HGNC	ENSG00000166135				184	1	0.540541	136	12	8.10811
PCDH15	0	genome.wustl.edu	37	10	55582245	55582245	+	Silent	SNP	A	A	G			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	10	55582245	55582245	A	G	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	silent	c.5241	p.L1747	0.067	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				18	0	0	18	3	14.2857
OR10S1	0	genome.wustl.edu	37	11	123848029	123848029	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	11	123848029	123848029	T	C	SNP	OR10S1	ENST00000531945	human	ensembl	74_37	-1	known	missense	c.370	p.T124A	0.079	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10S1	HGNC	ENSG00000196248				43	0	0	61	4	6.15385
OR5AS1	0	genome.wustl.edu	37	11	55798495	55798495	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	11	55798495	55798495	G	T	SNP	OR5AS1	ENST00000313555	human	ensembl	74_37	+1	known	missense	c.601	p.A201S	0.151	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785				311	0	0	295	21	6.64557
CHFR	0	genome.wustl.edu	37	12	133435715	133435715	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	12	133435715	133435715	C	G	SNP	CHFR	ENST00000266880	human	ensembl	74_37	-1	known	missense	c.886	p.D296H	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pfscan_FHA_dom,pfscan_Znf_RING	-	no_errors	CHFR	HGNC	ENSG00000072609				70	0	0	76	10	11.6279
BRCA2	0	genome.wustl.edu	37	13	32911853	32911853	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	13	32911853	32911853	T	A	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.3361	p.S1121T	1.000	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				80	0	0	55	5	8.33333
BRCA2	0	genome.wustl.edu	37	13	32911967	32911967	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	13	32911967	32911967	T	A	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.3475	p.C1159S	0.000	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				114	0	0	96	7	6.79612
OCA2	0	genome.wustl.edu	37	15	28228574	28228574	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	15	28228574	28228574	A	C	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	missense	c.1420	p.F474V	1.000	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				78	0	0	97	8	7.61905
ABCC12	0	genome.wustl.edu	37	16	48149471	48149471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	16	48149471	48149471	C	T	SNP	ABCC12	ENST00000311303	human	ensembl	74_37	-1	known	missense	c.1844	p.R615H	0.987	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC12	HGNC	ENSG00000140798				69	0	0	77	7	8.33333
CDH8	0	genome.wustl.edu	37	16	61687741	61687741	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	16	61687741	61687741	A	C	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	missense	c.2171	p.F724C	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				140	0	0	97	7	6.73077
MYH4	0	genome.wustl.edu	37	17	10368833	10368833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	17	10368833	10368833	C	T	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	missense	c.431	p.R144Q	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424				188	0	0	208	20	8.77193
SREBF1	0	genome.wustl.edu	37	17	17726908	17726908	+	Silent	SNP	C	C	G			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	17	17726908	17726908	C	G	SNP	SREBF1	ENST00000355815	human	ensembl	74_37	-1	known	silent	c.105	p.A35	0.250	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF1	HGNC	ENSG00000072310				70	0	0	64	11	14.6667
TBC1D3F	0	genome.wustl.edu	37	17	36293029	36293029	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	17	36293029	36293029	C	A	SNP	TBC1D3F	ENST00000327454	human	ensembl	74_37	+1	known	missense	c.1060	p.Q354K	0.919	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3F	HGNC	ENSG00000185128				15	0	0	7	3	30
KRTAP4-11	0	genome.wustl.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	17	39274087	39274087	G	C	SNP	KRTAP4-11	ENST00000391413	human	ensembl	74_37	-1	known	missense	c.481	p.L161V	0.005	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-11	HGNC	ENSG00000212721				16	0	0	21	4	16
KRTAP9-9	0	genome.wustl.edu	37	17	39412077	39412077	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	17	39412077	39412077	C	G	SNP	KRTAP9-9	ENST00000394008	human	ensembl	74_37	+1	known	missense	c.440	p.T147S	0.101	NULL	NULL	-	no_errors	KRTAP9-9	HGNC	ENSG00000198083				225	0	0	282	27	8.73786
TP53	0	genome.wustl.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	17	7577538	7577538	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.743	p.R248Q	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				74	0	0	62	5	7.46269
FECH	0	genome.wustl.edu	37	18	55247314	55247314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	18	55247314	55247314	G	A	SNP	FECH	ENST00000382873	human	ensembl	74_37	-1	known	missense	c.185	p.P62L	0.423	NULL	pfam_Ferrochelatase,tigrfam_Ferrochelatase	-	no_errors	FECH	HGNC	ENSG00000066926				126	0	0	121	10	7.63359
CLUL1	0	genome.wustl.edu	37	18	644941	644941	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	18	644941	644941	C	T	SNP	CLUL1	ENST00000338387	human	ensembl	74_37	+1	known	missense	c.1241	p.S414F	0.003	pfam_Clusterin-like,smart_Clusterin_C	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLUL1	HGNC	ENSG00000079101				65	0	0	41	5	10.8696
ZNF99	0	genome.wustl.edu	37	19	22940942	22940942	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	19	22940942	22940942	T	C	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	missense	c.1496	p.E499G	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973				58	0	0	34	5	12.8205
UQCRFS1	0	genome.wustl.edu	37	19	29698482	29698482	+	Silent	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	19	29698482	29698482	G	A	SNP	UQCRFS1	ENST00000304863	human	ensembl	74_37	-1	known	silent	c.798	p.T266	0.961	superfamily_Rieske_2Fe-2S,tigrfam_Ubiquinol_cyt_c_Rdtase_Fe-S-su	pfam_Ubiqinol_cyt_c_Rdtase_N,pfam_Ubiquinol_cyt_Rdtase_TM,pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,superfamily_Globular_prot_asu/bsu,prints_Rieske_Fe-S_prot_C,tigrfam_Ubiquinol_cyt_c_Rdtase_Fe-S-su	-	no_errors	UQCRFS1	HGNC	ENSG00000169021				64	0	0	50	3	5.66038
PSG2	0	genome.wustl.edu	37	19	43575896	43575896	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	19	43575896	43575896	G	C	SNP	PSG2	ENST00000406487	human	ensembl	74_37	-1	known	missense	c.920	p.A307G	0.055	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG2	HGNC	ENSG00000242221				280	0	0	342	30	8.06452
BIRC8	0	genome.wustl.edu	37	19	53793015	53793015	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	19	53793015	53793015	C	A	SNP	BIRC8	ENST00000426466	human	ensembl	74_37	-1	known	nonsense	c.613	p.G205*	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC8	HGNC	ENSG00000163098				109	0	0	94	5	5.05051
DPRX	0	genome.wustl.edu	37	19	54140031	54140031	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	19	54140031	54140031	C	T	SNP	DPRX	ENST00000376650	human	ensembl	74_37	+1	known	missense	c.365	p.T122M	0.001	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	DPRX	HGNC	ENSG00000204595				134	0	0	148	11	6.91824
ZNF274	0	genome.wustl.edu	37	19	58697083	58697083	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	19	58697083	58697083	C	G	SNP	ZNF274	ENST00000326804	human	ensembl	74_37	+1	known	missense	c.38	p.P13R	1.000	superfamily_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF274	HGNC	ENSG00000171606				103	0	0	138	8	5.47945
MUC16	0	genome.wustl.edu	37	19	9091701	9091701	+	Silent	SNP	G	G	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	19	9091701	9091701	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.114	p.T38	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				62	0	0	63	4	5.97015
MUC16	0	genome.wustl.edu	37	19	9091702	9091702	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	19	9091702	9091702	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.113	p.T38N	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				61	0	0	61	4	6.15385
PXDN	0	genome.wustl.edu	37	2	1677547	1677547	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	2	1677547	1677547	A	C	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.886	p.L296V	0.617	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				102	0	0	114	13	10.2362
HOXD3	0	genome.wustl.edu	37	2	177036736	177036736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	2	177036736	177036736	G	A	SNP	HOXD3	ENST00000249440	human	ensembl	74_37	+1	known	missense	c.1033	p.G345S	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD3	HGNC	ENSG00000128652				23	0	0	30	3	9.09091
OBSL1	0	genome.wustl.edu	37	2	220432469	220432469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	2	220432469	220432469	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.1505	p.S502F	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				82	0	0	70	5	6.66667
KCNIP3	0	genome.wustl.edu	37	2	96040939	96040939	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	2	96040939	96040939	G	A	SNP	KCNIP3	ENST00000295225	human	ensembl	74_37	+1	known	missense	c.430	p.G144R	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	KCNIP3	HGNC	ENSG00000115041				87	0	0	103	10	8.84956
SNPH	0	genome.wustl.edu	37	20	1277044	1277044	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	20	1277044	1277044	G	C	SNP	SNPH	ENST00000381867	human	ensembl	74_37	+1	known	missense	c.161	p.R54P	0.994	NULL	NULL	-	no_errors	SNPH	HGNC	ENSG00000101298				54	0	0	58	4	6.45161
GGTLC1	0	genome.wustl.edu	37	20	23967072	23967072	+	Splice_Site	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	20	23967072	23967072	C	T	SNP	GGTLC1	ENST00000278765	human	ensembl	74_37	-1	known	splice_site	c.176+1	e1+1	1.000	-	-	-	no_errors	GGTLC1	HGNC	ENSG00000149435				40	0	0	36	5	12.1951
KRTAP21-2	0	genome.wustl.edu	37	21	32119459	32119459	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	21	32119459	32119459	G	A	SNP	KRTAP21-2	ENST00000333892	human	ensembl	74_37	-1	known	missense	c.62	p.S21F	0.007	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP21-2	HGNC	ENSG00000187026				124	0	0	100	7	6.54206
CBR1	0	genome.wustl.edu	37	21	37444696	37444696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	21	37444696	37444696	C	T	SNP	CBR1	ENST00000399191	human	ensembl	74_37	+1	putative	missense	c.622	p.R208W	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	CBR1	HGNC	ENSG00000159228				51	0	0	50	3	5.66038
ENSG00000161103	0	genome.wustl.edu	37	22	18845962	18845962	+	RNA	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	22	18845962	18845962	G	A	SNP	ENSG00000161103	ENST00000412938	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	AC008132.13	Clone_based_vega_gene	ENSG00000161103				11	0	0	14	5	26.3158
SEZ6L	0	genome.wustl.edu	37	22	26688542	26688542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	22	26688542	26688542	G	A	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	missense	c.265	p.A89T	0.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095				41	0	0	43	3	6.52174
DPPA4	0	genome.wustl.edu	37	3	109047878	109047878	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	3	109047878	109047878	A	C	SNP	DPPA4	ENST00000335658	human	ensembl	74_37	-1	known	missense	c.737	p.V246G	0.997	NULL	NULL	-	no_errors	DPPA4	HGNC	ENSG00000121570				57	0	0	55	3	5.17241
NMNAT3	0	genome.wustl.edu	37	3	139346557	139346557	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	3	139346557	139346557	G	A	SNP	NMNAT3	ENST00000296202	human	ensembl	74_37	-1	known	nonsense	c.10	p.R4*	0.962	NULL	pfam_Cyt_trans-like,tigrfam_NAMN_adtrnsfrase	-	no_errors	NMNAT3	HGNC	ENSG00000163864				31	0	0	31	3	8.82353
DHX36	0	genome.wustl.edu	37	3	154010343	154010343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	3	154010343	154010343	C	T	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.1811	p.G604E	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				229	0	0	202	16	7.33945
FNDC3B	0	genome.wustl.edu	37	3	172055153	172055153	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	3	172055153	172055153	T	G	SNP	FNDC3B	ENST00000336824	human	ensembl	74_37	+1	known	missense	c.1814	p.L605R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420				91	0	0	43	4	8.51064
ALAS1	0	genome.wustl.edu	37	3	52236731	52236731	+	Silent	SNP	A	A	G			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	3	52236731	52236731	A	G	SNP	ALAS1	ENST00000310271	human	ensembl	74_37	+1	known	silent	c.408	p.E136	0.999	pfam_5aminolev_synth_preseq	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS1	HGNC	ENSG00000023330				43	0	0	37	3	7.5
OR5K1	0	genome.wustl.edu	37	3	98188977	98188977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	3	98188977	98188977	G	A	SNP	OR5K1	ENST00000332650	human	ensembl	74_37	+1	known	missense	c.557	p.R186K	0.992	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5K1	HGNC	ENSG00000232382				230	0	0	163	17	9.44444
WHSC1	0	genome.wustl.edu	37	4	1978261	1978261	+	Silent	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	4	1978261	1978261	G	A	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	silent	c.3681	p.R1227	1.000	superfamily_Znf_FYVE_PHD	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				17	0	0	20	3	13.0435
GPRC6A	0	genome.wustl.edu	37	6	117113951	117113951	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	6	117113951	117113951	G	A	SNP	GPRC6A	ENST00000310357	human	ensembl	74_37	-1	known	missense	c.2135	p.T712M	0.985	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612				57	0	0	75	4	5.06329
LATS1	0	genome.wustl.edu	37	6	150001244	150001244	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	6	150001244	150001244	C	G	SNP	LATS1	ENST00000253339	human	ensembl	74_37	-1	known	missense	c.2360	p.G787A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS1	HGNC	ENSG00000131023				159	0	0	95	11	10.3774
CHRM2	0	genome.wustl.edu	37	7	136701002	136701002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	7	136701002	136701002	G	A	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	missense	c.1390	p.A464T	0.997	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072				88	0	0	73	7	8.75
RP1L1	0	genome.wustl.edu	37	8	10467031	10467031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	8	10467031	10467031	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.4577	p.T1526M	0.894	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				87	0	0	88	6	6.38298
CSMD3	0	genome.wustl.edu	37	8	113960100	113960100	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	8	113960100	113960100	T	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.1427	p.E476V	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				51	0	0	48	6	11.1111
ZFAT	0	genome.wustl.edu	37	8	135669925	135669925	+	Silent	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	8	135669925	135669925	C	T	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	silent	c.75	p.S25	0.974	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				51	0	0	65	4	5.7971
PSD3	0	genome.wustl.edu	37	8	18725257	18725257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	8	18725257	18725257	C	T	SNP	PSD3	ENST00000440756	human	ensembl	74_37	-1	known	missense	c.1561	p.V521I	0.031	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	PSD3	HGNC	ENSG00000156011				161	0	0	153	14	8.38323
UNC5D	0	genome.wustl.edu	37	8	35542177	35542177	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	8	35542177	35542177	C	T	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.829	p.R277W	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				145	0	0	151	10	6.21118
SEC16A	0	genome.wustl.edu	37	9	139368957	139368957	+	Silent	SNP	A	A	C			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	9	139368957	139368957	A	C	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	silent	c.3111	p.L1037	0.010	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				40	0	0	29	4	12.1212
KIAA2026	0	genome.wustl.edu	37	9	6007500	6007500	+	Silent	SNP	G	G	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	9	6007500	6007500	G	A	SNP	KIAA2026	ENST00000399933	human	ensembl	74_37	-1	novel	silent	c.288	p.G96	0.997	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354				46	0	0	40	6	13.0435
NRK	0	genome.wustl.edu	37	X	105178264	105178264	+	Silent	SNP	A	A	G			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	X	105178264	105178264	A	G	SNP	NRK	ENST00000428173	human	ensembl	74_37	+1	known	silent	c.3330	p.G1110	0.004	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				39	0	0	34	6	15
DCAF12L2	0	genome.wustl.edu	37	X	125299770	125299770	+	Silent	SNP	C	C	T			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	X	125299770	125299770	C	T	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	silent	c.138	p.A46	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354				27	0	0	34	4	10.5263
MAGEC1	0	genome.wustl.edu	37	X	140995303	140995303	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	X	140995303	140995303	C	A	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.2113	p.L705M	0.068	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				104	0	0	97	18	15.6522
PCDH11X	0	genome.wustl.edu	37	X	91134131	91134131	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	X	91134131	91134131	A	C	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.2892	p.Q964H	1.000	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				128	0	0	152	29	16.0221
NOTCH2	0	genome.wustl.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	1	120612003	120612004	GG	-	DEL	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	frame_shift_del	c.18_17	p.P6fs	0.101:0.700	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				20	0	0	31	5	13.8889
DMXL2	0	genome.wustl.edu	37	15	51857322	51857323	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8384-01A-21D-2394-08	TCGA-BR-8384-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67e2a6ef-86ba-44b7-8e27-caa5d939abc9	f3204691-0a34-4064-90ce-8fa32a8e43c4	15	51857322	51857323	-	A	INS	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	frame_shift_ins	c.327_326	p.L109fs	1.000:1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				39	0	0	29	3	9.375
