Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SASS6	0	genome.wustl.edu	37	1	100573401	100573401	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	100573401	100573401	T	C	SNP	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	missense	c.1021	p.T341A	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				88	0	0	34	19	35.8491
NPPA	0	genome.wustl.edu	37	1	11907324	11907324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	11907324	11907324	C	T	SNP	NPPA	ENST00000376480	human	ensembl	74_37	-1	known	missense	c.296	p.R99Q	0.060	prints_Natriuretic_peptide_atrial	pfam_Natr_peptide,smart_Natr_peptide,prints_Natriuretic_peptide_atrial,prints_Natr_peptide	-	no_errors	NPPA	HGNC	ENSG00000175206				135	0	0	54	49	47.5728
GBAP1	0	genome.wustl.edu	37	1	155187130	155187130	+	RNA	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	155187130	155187130	G	A	SNP	GBAP1	ENST00000368374	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GBAP1	HGNC	ENSG00000160766				85	0	0	86	14	14
LRRC52	0	genome.wustl.edu	37	1	165513566	165513566	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	165513566	165513566	G	A	SNP	LRRC52	ENST00000294818	human	ensembl	74_37	+1	known	nonsense	c.33	p.W11*	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC52	HGNC	ENSG00000162763				105	0	0	122	28	18.6667
PADI2	0	genome.wustl.edu	37	1	17395663	17395663	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	17395663	17395663	A	T	SNP	PADI2	ENST00000375486	human	ensembl	74_37	-1	known	missense	c.1874	p.L625Q	1.000	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI2	HGNC	ENSG00000117115				130	0	0	58	44	43.1373
ACTL8	0	genome.wustl.edu	37	1	18149652	18149652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	18149652	18149652	G	A	SNP	ACTL8	ENST00000375406	human	ensembl	74_37	+1	known	missense	c.149	p.R50H	0.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL8	HGNC	ENSG00000117148				152	0	0	72	31	30.0971
NPL	0	genome.wustl.edu	37	1	182798028	182798028	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	182798028	182798028	G	T	SNP	NPL	ENST00000258317	human	ensembl	74_37	+1	known	missense	c.948	p.L316F	0.118	NULL	pfam_DapA-like,prints_DapA-like	-	no_errors	NPL	HGNC	ENSG00000135838				134	0	0	106	9	7.82609
PRG4	0	genome.wustl.edu	37	1	186276027	186276027	+	Silent	SNP	T	T	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	186276027	186276027	T	C	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	silent	c.1176	p.T392	0.000	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				103	1	0.961538	298	35	10.5105
REN	0	genome.wustl.edu	37	1	204131141	204131141	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	204131141	204131141	G	A	SNP	REN	ENST00000272190	human	ensembl	74_37	-1	known	silent	c.249	p.D83	0.080	superfamily_Peptidase_aspartic_dom	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	REN	HGNC	ENSG00000143839				52	0	0	42	8	16
TMCC2	0	genome.wustl.edu	37	1	205238338	205238338	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	205238338	205238338	C	T	SNP	TMCC2	ENST00000358024	human	ensembl	74_37	+1	known	silent	c.1008	p.F336	0.827	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069				58	0	0	62	31	33.3333
CSMD2	0	genome.wustl.edu	37	1	34180299	34180299	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	34180299	34180299	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	silent	c.3294	p.G1098	0.021	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				150	0	0	90	34	27.4194
INPP5B	0	genome.wustl.edu	37	1	38351292	38351292	+	RNA	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	38351292	38351292	G	T	SNP	INPP5B	ENST00000467066	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	INPP5B	HGNC	ENSG00000204084				81	0	0	32	28	46.6667
SGIP1	0	genome.wustl.edu	37	1	67147694	67147694	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	67147694	67147694	C	T	SNP	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	silent	c.969	p.S323	1.000	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				191	0	0	83	59	41.5493
SGIP1	0	genome.wustl.edu	37	1	67148039	67148039	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	67148039	67148039	G	A	SNP	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	silent	c.1314	p.P438	0.875	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				284	0	0	111	79	41.5789
SLC39A12	0	genome.wustl.edu	37	10	18292192	18292192	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	10	18292192	18292192	T	C	SNP	SLC39A12	ENST00000377369	human	ensembl	74_37	+1	known	missense	c.1852	p.Y618H	0.999	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482				181	0	0	119	28	19.0476
ARMC4	0	genome.wustl.edu	37	10	28225654	28225654	+	Splice_Site	SNP	C	C	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	10	28225654	28225654	C	G	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	splice_site	c.2252+1	e14+1	1.000	-	-	-	no_errors	ARMC4	HGNC	ENSG00000169126				189	0	0	154	39	20.2073
ENSG00000270002	0	genome.wustl.edu	37	10	87406860	87406860	+	RNA	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	10	87406860	87406860	G	T	SNP	ENSG00000270002	ENST00000474115	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-93H12.4	Clone_based_vega_gene	ENSG00000270002				103	0	0	57	24	29.6296
ENSG00000254506	0	genome.wustl.edu	37	11	101464942	101464942	+	RNA	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	101464942	101464942	C	A	SNP	ENSG00000254506	ENST00000527374	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.080	-	-	-	no_errors	RP11-748H22.1	Clone_based_vega_gene	ENSG00000254506				21	0	0	15	10	40
DDX10	0	genome.wustl.edu	37	11	108709278	108709278	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	108709278	108709278	A	T	SNP	DDX10	ENST00000322536	human	ensembl	74_37	+1	known	missense	c.2071	p.T691S	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105				194	0	0	77	30	28.0374
OR10G9	0	genome.wustl.edu	37	11	123894262	123894262	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	123894262	123894262	G	A	SNP	OR10G9	ENST00000375024	human	ensembl	74_37	+1	known	silent	c.543	p.P181	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G9	HGNC	ENSG00000236981				222	1	0.44843	173	62	26.383
DCPS	0	genome.wustl.edu	37	11	126174022	126174022	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	126174022	126174022	A	C	SNP	DCPS	ENST00000263579	human	ensembl	74_37	+1	known	missense	c.47	p.D16A	0.000	pirsf_DcpS/DCS2	pfam_DcpS/DCS2,superfamily_HIT-like,superfamily_Scavenger_mRNA_decap_enz_N,pirsf_DcpS/DCS2	-	no_errors	DCPS	HGNC	ENSG00000110063				38	0	0	35	8	18.6047
DCPS	0	genome.wustl.edu	37	11	126174023	126174023	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	126174023	126174023	C	G	SNP	DCPS	ENST00000263579	human	ensembl	74_37	+1	known	missense	c.48	p.D16E	0.000	pirsf_DcpS/DCS2	pfam_DcpS/DCS2,superfamily_HIT-like,superfamily_Scavenger_mRNA_decap_enz_N,pirsf_DcpS/DCS2	-	no_errors	DCPS	HGNC	ENSG00000110063				40	0	0	36	8	18.1818
MUC5B	0	genome.wustl.edu	37	11	1268160	1268160	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	1268160	1268160	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.10059	p.S3353	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				23	0	0	15	7	31.8182
LUZP2	0	genome.wustl.edu	37	11	25004701	25004701	+	Silent	SNP	T	T	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	25004701	25004701	T	G	SNP	LUZP2	ENST00000336930	human	ensembl	74_37	+1	known	silent	c.627	p.T209	0.025	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398				184	0	0	81	16	16.4948
CELF1	0	genome.wustl.edu	37	11	47493779	47493779	+	RNA	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	47493779	47493779	C	T	SNP	CELF1	ENST00000539455	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CELF1	HGNC	ENSG00000149187				349	0	0	278	89	24.2507
OSBP	0	genome.wustl.edu	37	11	59377920	59377920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	59377920	59377920	G	A	SNP	OSBP	ENST00000263847	human	ensembl	74_37	-1	known	missense	c.505	p.R169W	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP	HGNC	ENSG00000110048				137	0	0	91	22	19.469
STIP1	0	genome.wustl.edu	37	11	63964584	63964584	+	RNA	SNP	T	T	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	63964584	63964584	T	A	SNP	STIP1	ENST00000537479	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	STIP1	HGNC	ENSG00000168439				12	0	0	1	4	80
GAB2	0	genome.wustl.edu	37	11	77937657	77937657	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	77937657	77937657	C	G	SNP	GAB2	ENST00000361507	human	ensembl	74_37	-1	known	missense	c.1061	p.R354P	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327				86	0	0	45	37	45.122
TENM4	0	genome.wustl.edu	37	11	78381504	78381504	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	78381504	78381504	C	T	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	silent	c.5886	p.A1962	0.949	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				57	0	0	66	13	16.4557
SYTL2	0	genome.wustl.edu	37	11	85445087	85445087	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	11	85445087	85445087	T	A	SNP	SYTL2	ENST00000316356	human	ensembl	74_37	-1	known	missense	c.1285	p.T429S	0.001	NULL	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	-	no_errors	SYTL2	HGNC	ENSG00000137501				132	0	0	63	30	32.2581
ACACB	0	genome.wustl.edu	37	12	109684073	109684073	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	12	109684073	109684073	T	G	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.5391	p.F1797L	1.000	pfam_Carboxyl_trans	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				96	0	0	79	21	21
RPH3A	0	genome.wustl.edu	37	12	113303287	113303287	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	12	113303287	113303287	T	A	SNP	RPH3A	ENST00000389385	human	ensembl	74_37	+1	known	missense	c.299	p.L100Q	1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	pfam_C2_dom,pfam_Znf_FYVE-typ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel,prints_Synaptotagmin,prints_C2_dom	-	no_errors	RPH3A	HGNC	ENSG00000089169				122	0	0	66	25	27.4725
MED13L	0	genome.wustl.edu	37	12	116445251	116445251	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	12	116445251	116445251	G	T	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	missense	c.2203	p.Q735K	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				145	0	0	60	15	20
CACNA1C	0	genome.wustl.edu	37	12	2797944	2797944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	12	2797944	2797944	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.6329	p.A2110V	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				11	0	0	7	4	36.3636
LIMA1	0	genome.wustl.edu	37	12	50598452	50598452	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	12	50598452	50598452	C	A	SNP	LIMA1	ENST00000394943	human	ensembl	74_37	-1	known	missense	c.747	p.E249D	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405				116	1	0.854701	44	18	29.0323
TAPBPL	0	genome.wustl.edu	37	12	6562381	6562381	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	12	6562381	6562381	C	T	SNP	TAPBPL	ENST00000266556	human	ensembl	74_37	+1	known	silent	c.213	p.D71	0.744	NULL	pfam_Ig_C1-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	TAPBPL	HGNC	ENSG00000139192				25	0	0	19	2	9.52381
PHB2	0	genome.wustl.edu	37	12	7076368	7076368	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	12	7076368	7076368	C	T	SNP	PHB2	ENST00000399433	human	ensembl	74_37	-1	known	missense	c.755	p.R252H	1.000	NULL	pfam_Band_7,smart_Band_7,prints_Prohibitin	-	no_errors	PHB2	HGNC	ENSG00000215021				30	0	0	18	4	18.1818
NAV3	0	genome.wustl.edu	37	12	78415601	78415601	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	12	78415601	78415601	C	T	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.1982	p.S661L	0.973	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				80	0	0	25	13	34.2105
CLLU1	0	genome.wustl.edu	37	12	92818809	92818809	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	12	92818809	92818809	G	A	SNP	CLLU1	ENST00000378485	human	ensembl	74_37	+1	known	missense	c.353	p.R118H	0.000	NULL	NULL	-	no_errors	CLLU1	HGNC	ENSG00000257127				40	0	0	17	3	15
MYO16	0	genome.wustl.edu	37	13	109617206	109617206	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	13	109617206	109617206	G	A	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	silent	c.2259	p.V753	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				154	0	0	122	22	15.2778
TMEM255B	0	genome.wustl.edu	37	13	114514919	114514919	+	RNA	SNP	A	A	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	13	114514919	114514919	A	T	SNP	TMEM255B	ENST00000467169	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TMEM255B	HGNC	ENSG00000184497				85	0	0	98	26	20.9677
PSPC1	0	genome.wustl.edu	37	13	20346569	20346569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	13	20346569	20346569	G	A	SNP	PSPC1	ENST00000338910	human	ensembl	74_37	-1	known	missense	c.487	p.L163F	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390				124	0	0	106	25	19.084
DCLK1	0	genome.wustl.edu	37	13	36379820	36379820	+	RNA	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	13	36379820	36379820	G	T	SNP	DCLK1	ENST00000486239	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DCLK1	HGNC	ENSG00000133083				138	0	0	139	36	20.5714
AHNAK2	0	genome.wustl.edu	37	14	105412999	105412999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	14	105412999	105412999	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.8789	p.A2930V	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				421	0	0	171	116	40.4181
MDGA2	0	genome.wustl.edu	37	14	47426671	47426671	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	14	47426671	47426671	G	A	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	silent	c.1995	p.Y665	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				82	0	0	37	12	24.4898
TTLL5	0	genome.wustl.edu	37	14	76165590	76165590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	14	76165590	76165590	C	T	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	missense	c.562	p.R188W	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				62	0	0	18	9	33.3333
DNM1P47	0	genome.wustl.edu	37	15	102296140	102296140	+	RNA	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	15	102296140	102296140	C	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				12	0	0	7	4	36.3636
ATP8B4	0	genome.wustl.edu	37	15	50152665	50152665	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	15	50152665	50152665	C	T	SNP	ATP8B4	ENST00000284509	human	ensembl	74_37	-1	known	missense	c.3305	p.R1102Q	0.339	NULL	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B4	HGNC	ENSG00000104043				88	0	0	42	33	44
SYNGR3	0	genome.wustl.edu	37	16	2043051	2043051	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	16	2043051	2043051	G	A	SNP	SYNGR3	ENST00000248121	human	ensembl	74_37	+1	known	missense	c.668	p.G223E	1.000	pirsf_Synaptogyrin	pfam_Marvel,pirsf_Synaptogyrin	-	no_errors	SYNGR3	HGNC	ENSG00000127561				30	0	0	32	10	23.8095
MYH13	0	genome.wustl.edu	37	17	10209864	10209864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	17	10209864	10209864	G	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.5378	p.T1793M	0.998	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				198	0	0	81	37	31.3559
MYH13	0	genome.wustl.edu	37	17	10243522	10243522	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	17	10243522	10243522	C	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.2001	p.R667S	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				41	0	0	12	12	50
RAI1	0	genome.wustl.edu	37	17	17697280	17697280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	17	17697280	17697280	C	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.1018	p.P340S	1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				178	0	0	130	71	35.3234
CCDC144CP	0	genome.wustl.edu	37	17	20224724	20224724	+	RNA	SNP	A	A	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	17	20224724	20224724	A	T	SNP	CCDC144CP	ENST00000340196	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CCDC144CP	HGNC	ENSG00000154898				86	0	0	68	23	25.2747
ACACA	0	genome.wustl.edu	37	17	35567388	35567388	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	17	35567388	35567388	G	A	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	silent	c.3700	p.L1234	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				86	0	0	42	9	17.6471
ACACA	0	genome.wustl.edu	37	17	35687327	35687327	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	17	35687327	35687327	A	C	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.124	p.S42A	0.112	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				126	0	0	1698	465	21.4979
TOP2A	0	genome.wustl.edu	37	17	38545839	38545839	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	17	38545839	38545839	C	A	SNP	TOP2A	ENST00000423485	human	ensembl	74_37	-1	known	missense	c.4528	p.A1510S	0.988	pfam_DTHCT	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2A	HGNC	ENSG00000131747				23	0	0	220	16	6.77966
KRT39	0	genome.wustl.edu	37	17	39116589	39116589	+	Silent	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	17	39116589	39116589	G	T	SNP	KRT39	ENST00000355612	human	ensembl	74_37	-1	known	silent	c.1161	p.S387	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT39	HGNC	ENSG00000196859				157	0	0	1629	1458	47.2303
BZRAP1	0	genome.wustl.edu	37	17	56399716	56399716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	17	56399716	56399716	G	A	SNP	BZRAP1	ENST00000355701	human	ensembl	74_37	-1	known	missense	c.1375	p.R459W	0.980	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379				112	0	0	75	20	21.0526
TP53	0	genome.wustl.edu	37	17	7579311	7579311	+	Splice_Site	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	17	7579311	7579311	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.375+1	e3+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510				103	0	0	24	75	75.7576
LAMA3	0	genome.wustl.edu	37	18	21531699	21531699	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	18	21531699	21531699	C	G	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.9694	p.P3232A	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				43	0	0	28	9	24.3243
S1PR5	0	genome.wustl.edu	37	19	10624548	10624548	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	19	10624548	10624548	G	A	SNP	S1PR5	ENST00000333430	human	ensembl	74_37	-1	known	silent	c.1140	p.G380	0.715	prints_EDG8_S1P_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_EDG8_S1P_rcpt,prints_S1P_rcpt,prints_GPCR_Rhodpsn	-	no_errors	S1PR5	HGNC	ENSG00000180739				44	0	0	49	11	18.3333
LRRC4B	0	genome.wustl.edu	37	19	51021504	51021504	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	19	51021504	51021504	G	A	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.1466	p.T489M	0.989	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				23	0	0	14	6	30
ZNF134	0	genome.wustl.edu	37	19	58132648	58132648	+	Silent	SNP	T	T	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	19	58132648	58132648	T	C	SNP	ZNF134	ENST00000396161	human	ensembl	74_37	+1	known	silent	c.1161	p.L387	0.731	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF134	HGNC	ENSG00000213762				148	0	0	120	27	18.3673
FUT3	0	genome.wustl.edu	37	19	5844835	5844835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	19	5844835	5844835	C	T	SNP	FUT3	ENST00000303225	human	ensembl	74_37	-1	known	missense	c.16	p.A6T	0.000	NULL	pfam_Glyco_trans_10	-	no_errors	FUT3	HGNC	ENSG00000171124				36	0	0	31	16	34.0426
MUC16	0	genome.wustl.edu	37	19	9074307	9074307	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	19	9074307	9074307	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.13139	p.T4380K	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				130	0	0	69	32	31.6832
TFCP2L1	0	genome.wustl.edu	37	2	122007204	122007204	+	Silent	SNP	T	T	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	122007204	122007204	T	A	SNP	TFCP2L1	ENST00000263707	human	ensembl	74_37	-1	known	silent	c.234	p.R78	0.073	pfam_CP2	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2L1	HGNC	ENSG00000115112				115	1	0.862069	87	20	18.6916
ENSG00000213225	0	genome.wustl.edu	37	2	130989093	130989093	+	RNA	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	130989093	130989093	C	T	SNP	ENSG00000213225	ENST00000450578	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.961	-	-	-	no_errors	AC018804.7	Clone_based_vega_gene	ENSG00000213225				39	0	0	17	7	29.1667
LRP1B	0	genome.wustl.edu	37	2	142004919	142004919	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	142004919	142004919	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.468	p.Q156H	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				165	0	0	90	29	24.3697
NEB	0	genome.wustl.edu	37	2	152554096	152554096	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	152554096	152554096	A	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.1219	p.F407L	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				84	0	0	77	17	18.0851
TTN	0	genome.wustl.edu	37	2	179469800	179469800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	179469800	179469800	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.46400	p.A15467V	0.957	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				183	0	0	156	29	15.6757
TTN	0	genome.wustl.edu	37	2	179592983	179592983	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	179592983	179592983	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.15836	p.T5279K	0.546	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				45	0	0	46	5	9.80392
AOX1	0	genome.wustl.edu	37	2	201477352	201477352	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	201477352	201477352	C	A	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	missense	c.1284	p.F428L	1.000	pfam_CO_DH_flav_C,superfamily_CO_DH_flav_C,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356				117	0	0	117	32	21.4765
ABCA12	0	genome.wustl.edu	37	2	215843627	215843627	+	Silent	SNP	T	T	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	215843627	215843627	T	C	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	silent	c.4878	p.K1626	0.965	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				119	0	0	80	54	40.2985
IGFBP2	0	genome.wustl.edu	37	2	217525405	217525405	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	217525405	217525405	G	T	SNP	IGFBP2	ENST00000233809	human	ensembl	74_37	+1	known	missense	c.568	p.V190L	0.993	NULL	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-2	-	no_errors	IGFBP2	HGNC	ENSG00000115457				38	0	0	29	12	29.2683
FAM124B	0	genome.wustl.edu	37	2	225266407	225266407	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	225266407	225266407	T	A	SNP	FAM124B	ENST00000409685	human	ensembl	74_37	-1	known	missense	c.79	p.T27S	0.881	NULL	NULL	-	no_errors	FAM124B	HGNC	ENSG00000124019				65	0	0	80	20	20
DNER	0	genome.wustl.edu	37	2	230377546	230377546	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	230377546	230377546	G	T	SNP	DNER	ENST00000341772	human	ensembl	74_37	-1	known	missense	c.1100	p.A367E	0.722	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DNER	HGNC	ENSG00000187957				179	0	0	100	31	23.6641
ADCY3	0	genome.wustl.edu	37	2	25057468	25057468	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	25057468	25057468	G	A	SNP	ADCY3	ENST00000260600	human	ensembl	74_37	-1	known	missense	c.1853	p.P618L	0.976	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031				136	0	0	151	43	22.1649
PPP1R21	0	genome.wustl.edu	37	2	48687039	48687039	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	48687039	48687039	C	T	SNP	PPP1R21	ENST00000294952	human	ensembl	74_37	+1	known	silent	c.522	p.N174	0.110	NULL	pfam_KLRAQ/TTKRSYEDQ_C,pfam_Unchr_KLRAQ/TTKRSYEDQ_N,superfamily_Ferritin-like_SF	-	no_errors	PPP1R21	HGNC	ENSG00000162869				31	0	0	53	12	18.4615
CD207	0	genome.wustl.edu	37	2	71058830	71058830	+	Splice_Site	SNP	A	A	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	71058830	71058830	A	T	SNP	CD207	ENST00000410009	human	ensembl	74_37	-1	known	splice_site	c.836+2	e5+2	0.981	-	-	-	no_errors	CD207	HGNC	ENSG00000116031				80	0	0	90	22	19.6429
FUNDC2P2	0	genome.wustl.edu	37	2	84518353	84518353	+	RNA	SNP	G	G	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	84518353	84518353	G	C	SNP	FUNDC2P2	ENST00000331369	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.351	-	-	-	no_errors	FUNDC2P2	HGNC	ENSG00000182814				194	0	0	136	36	20.9302
SNPH	0	genome.wustl.edu	37	20	1281207	1281207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	1281207	1281207	C	T	SNP	SNPH	ENST00000381867	human	ensembl	74_37	+1	known	missense	c.292	p.R98C	1.000	NULL	NULL	-	no_errors	SNPH	HGNC	ENSG00000101298				45	0	0	82	15	15.4639
PDYN	0	genome.wustl.edu	37	20	1961277	1961277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	1961277	1961277	C	T	SNP	PDYN	ENST00000217305	human	ensembl	74_37	-1	known	missense	c.457	p.D153N	0.000	prints_Proenkphlin_B	pfam_Opioid_neupept,prints_Proenkphlin_B,prints_Opioid_neupept	-	no_errors	PDYN	HGNC	ENSG00000101327				123	0	0	258	33	11.3402
FRG1B	0	genome.wustl.edu	37	20	29612029	29612029	+	RNA	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	29612029	29612029	G	A	SNP	FRG1B	ENST00000468180	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FRG1B	HGNC	ENSG00000149531				13	0	0	33	4	10.8108
XKR7	0	genome.wustl.edu	37	20	30556111	30556111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	30556111	30556111	G	A	SNP	XKR7	ENST00000562532	human	ensembl	74_37	+1	known	missense	c.133	p.A45T	0.980	NULL	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000260903				9	0	0	28	6	17.6471
RALY	0	genome.wustl.edu	37	20	32661668	32661668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	32661668	32661668	G	A	SNP	RALY	ENST00000246194	human	ensembl	74_37	+1	known	missense	c.373	p.D125N	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970				53	0	0	84	16	16
EPB41L1	0	genome.wustl.edu	37	20	34766563	34766563	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	34766563	34766563	C	T	SNP	EPB41L1	ENST00000338074	human	ensembl	74_37	+1	known	silent	c.459	p.D153	0.998	pfam_FERM_N,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L1	HGNC	ENSG00000088367				159	1	0.625	315	35	10
PTPRT	0	genome.wustl.edu	37	20	40944604	40944604	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	40944604	40944604	A	C	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.1898	p.L633R	0.378	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				87	0	0	168	29	14.7208
TBC1D20	0	genome.wustl.edu	37	20	419300	419300	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	419300	419300	G	A	SNP	TBC1D20	ENST00000354200	human	ensembl	74_37	-1	known	missense	c.1142	p.A381V	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D20	HGNC	ENSG00000125875				160	0	0	324	55	14.5119
R3HDML	0	genome.wustl.edu	37	20	42966005	42966005	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	42966005	42966005	C	A	SNP	R3HDML	ENST00000217043	human	ensembl	74_37	+1	known	missense	c.208	p.H70N	1.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	R3HDML	HGNC	ENSG00000101074				82	0	0	143	18	11.1801
KCNG1	0	genome.wustl.edu	37	20	49620679	49620679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	49620679	49620679	C	T	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	missense	c.1439	p.R480Q	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				73	0	0	120	15	11.1111
CYP24A1	0	genome.wustl.edu	37	20	52774694	52774694	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	52774694	52774694	C	T	SNP	CYP24A1	ENST00000216862	human	ensembl	74_37	-1	known	silent	c.1167	p.P389	0.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186				59	0	0	78	13	14.2857
GNAS	0	genome.wustl.edu	37	20	57428581	57428581	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	57428581	57428581	A	C	SNP	GNAS	ENST00000371100	human	ensembl	74_37	+1	putative	missense	c.261	p.E87D	0.878	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460				58	0	0	97	13	11.8182
COL6A2	0	genome.wustl.edu	37	21	47552191	47552191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	21	47552191	47552191	G	A	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	missense	c.2785	p.V929M	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				28	0	0	13	3	18.75
PCNT	0	genome.wustl.edu	37	21	47858216	47858216	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	21	47858216	47858216	T	A	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.9239	p.L3080Q	0.091	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				67	0	0	21	16	43.2432
RGL4	0	genome.wustl.edu	37	22	24034327	24034327	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	22	24034327	24034327	G	A	SNP	RGL4	ENST00000290691	human	ensembl	74_37	+1	known	missense	c.110	p.R37H	0.000	NULL	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	-	no_errors	RGL4	HGNC	ENSG00000159496				138	0	0	117	32	21.4765
MICALL1	0	genome.wustl.edu	37	22	38313789	38313789	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	22	38313789	38313789	A	G	SNP	MICALL1	ENST00000215957	human	ensembl	74_37	+1	known	missense	c.413	p.E138G	0.672	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL1	HGNC	ENSG00000100139				95	0	0	69	19	21.5909
PICK1	0	genome.wustl.edu	37	22	38470942	38470942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	22	38470942	38470942	G	A	SNP	PICK1	ENST00000356976	human	ensembl	74_37	+1	known	missense	c.1051	p.V351M	1.000	pfam_AH_dom,pfam_BAR_dom,pfscan_AH_dom	pfam_AH_dom,pfam_PDZ,pfam_BAR_dom,superfamily_PDZ,smart_PDZ,pfscan_AH_dom,pfscan_PDZ	-	no_errors	PICK1	HGNC	ENSG00000100151				55	0	0	34	23	40.3509
ADSL	0	genome.wustl.edu	37	22	40745872	40745872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	22	40745872	40745872	G	A	SNP	ADSL	ENST00000454266	human	ensembl	74_37	+1	known	missense	c.190	p.E64K	1.000	superfamily_L-Aspartase-like,tigrfam_Pur_lyase	pfam_Fumarate_lyase_N,pfam_AdenyloSucc_lyase_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Pur_lyase	-	no_errors	ADSL	HGNC	ENSG00000239900				83	0	0	42	12	22.2222
SERHL	0	genome.wustl.edu	37	22	42905109	42905109	+	RNA	SNP	T	T	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	22	42905109	42905109	T	C	SNP	SERHL	ENST00000359906	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SERHL	HGNC	ENSG00000172250				46	0	0	44	11	20
PANX2	0	genome.wustl.edu	37	22	50616205	50616205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	22	50616205	50616205	G	A	SNP	PANX2	ENST00000395842	human	ensembl	74_37	+1	known	missense	c.1064	p.R355H	1.000	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150				80	0	0	64	22	25.5814
FAM194A	0	genome.wustl.edu	37	3	150377783	150377783	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	3	150377783	150377783	A	G	SNP	FAM194A	ENST00000295910	human	ensembl	74_37	-1	known	missense	c.1888	p.Y630H	1.000	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645				134	0	0	70	15	17.6471
BCHE	0	genome.wustl.edu	37	3	165547877	165547877	+	Silent	SNP	T	T	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	3	165547877	165547877	T	C	SNP	BCHE	ENST00000264381	human	ensembl	74_37	-1	known	silent	c.945	p.S315	0.001	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200				88	0	0	31	12	27.907
LINC00969	0	genome.wustl.edu	37	3	195395399	195395399	+	RNA	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	3	195395399	195395399	G	A	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				57	0	0	91	10	9.90099
LINC00969	0	genome.wustl.edu	37	3	195400728	195400728	+	RNA	SNP	A	A	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	3	195400728	195400728	A	G	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086				60	0	0	59	4	6.34921
KCNH8	0	genome.wustl.edu	37	3	19554711	19554711	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	3	19554711	19554711	A	C	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.2329	p.T777P	0.920	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				120	0	0	49	24	32.8767
TRAK1	0	genome.wustl.edu	37	3	42264612	42264612	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	3	42264612	42264612	A	G	SNP	TRAK1	ENST00000396175	human	ensembl	74_37	+1	known	missense	c.2071	p.I691V	1.000	pfam_Traffickng_kinesin-bd_prot_dom	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606				66	0	0	30	22	42.3077
CADPS	0	genome.wustl.edu	37	3	62459861	62459861	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	3	62459861	62459861	T	C	SNP	CADPS	ENST00000383710	human	ensembl	74_37	-1	known	missense	c.3464	p.E1155G	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618				120	0	0	41	15	26.7857
EMCN	0	genome.wustl.edu	37	4	101342536	101342536	+	Splice_Site	SNP	T	T	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	4	101342536	101342536	T	G	SNP	EMCN	ENST00000296420	human	ensembl	74_37	-1	known	splice_site	c.569-2	e8-2	0.990	-	-	-	no_errors	EMCN	HGNC	ENSG00000164035				62	0	0	21	17	44.7368
FAT4	0	genome.wustl.edu	37	4	126412593	126412593	+	Silent	SNP	A	A	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	4	126412593	126412593	A	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.14616	p.Q4872	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				97	0	0	33	19	36.5385
DCHS2	0	genome.wustl.edu	37	4	155254426	155254426	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	4	155254426	155254426	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	silent	c.1437	p.A479	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				107	0	0	43	30	41.0959
PIGG	0	genome.wustl.edu	37	4	502758	502758	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	4	502758	502758	C	T	SNP	PIGG	ENST00000453061	human	ensembl	74_37	+1	known	silent	c.900	p.P300	0.952	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227				49	0	0	17	15	46.875
LRRC66	0	genome.wustl.edu	37	4	52862164	52862164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	4	52862164	52862164	C	T	SNP	LRRC66	ENST00000343457	human	ensembl	74_37	-1	known	missense	c.1024	p.G342S	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993				48	0	0	19	4	17.3913
GRID2	0	genome.wustl.edu	37	4	94138146	94138146	+	RNA	SNP	A	A	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	4	94138146	94138146	A	G	SNP	GRID2	ENST00000505687	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208				61	0	0	24	15	38.4615
MARCH6	0	genome.wustl.edu	37	5	10402501	10402501	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	5	10402501	10402501	G	A	SNP	MARCH6	ENST00000274140	human	ensembl	74_37	+1	known	silent	c.1059	p.L353	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH6	HGNC	ENSG00000145495				110	1	0.900901	28	20	41.6667
PCDHA8	0	genome.wustl.edu	37	5	140221992	140221992	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	5	140221992	140221992	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	silent	c.1086	p.D362	0.964	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				193	0	0	76	35	31.5315
PCDHAC2	0	genome.wustl.edu	37	5	140348338	140348338	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	5	140348338	140348338	C	T	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	nonsense	c.1987	p.R663*	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				112	0	0	33	29	46.7742
FAM153C	0	genome.wustl.edu	37	5	177468720	177468720	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	5	177468720	177468720	C	G	SNP	FAM153C	ENST00000507848	human	ensembl	74_37	+1	known	missense	c.160	p.L54V	0.000	prints_FAM153	prints_FAM153	-	no_errors	FAM153C	HGNC	ENSG00000204677				142	0	0	16	5	23.8095
ZDHHC11B	0	genome.wustl.edu	37	5	766930	766930	+	Silent	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	5	766930	766930	C	T	SNP	ZDHHC11B	ENST00000382776	human	ensembl	74_37	-1	known	silent	c.105	p.S35	0.010	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11B	HGNC	ENSG00000206077				62	0	0	59	19	24.359
SYNE1	0	genome.wustl.edu	37	6	152631870	152631870	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	6	152631870	152631870	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	nonsense	c.16849	p.R5617*	0.724	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				51	0	0	16	4	20
PLG	0	genome.wustl.edu	37	6	161139469	161139469	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	6	161139469	161139469	C	G	SNP	PLG	ENST00000308192	human	ensembl	74_37	+1	known	missense	c.931	p.P311A	1.000	pirsf_Pept_S1A_plasmin,pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	PLG	HGNC	ENSG00000122194				118	0	0	104	30	22.3881
TUBB2A	0	genome.wustl.edu	37	6	3155237	3155237	+	RNA	SNP	T	T	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	6	3155237	3155237	T	A	SNP	TUBB2A	ENST00000489942	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TUBB2A	HGNC	ENSG00000137267				24	0	0	28	8	22.2222
HMGCLL1	0	genome.wustl.edu	37	6	55300436	55300436	+	RNA	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	6	55300436	55300436	C	T	SNP	HMGCLL1	ENST00000507223	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HMGCLL1	HGNC	ENSG00000146151				63	0	0	30	11	26.8293
DST	0	genome.wustl.edu	37	6	56347545	56347545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	6	56347545	56347545	C	T	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.21245	p.R7082H	1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				99	0	0	55	18	24.6575
FUT9	0	genome.wustl.edu	37	6	96651145	96651145	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	6	96651145	96651145	C	A	SNP	FUT9	ENST00000302103	human	ensembl	74_37	+1	known	missense	c.114	p.F38L	0.882	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT9	HGNC	ENSG00000172461				123	1	0.806452	53	38	41.7582
PSMC2	0	genome.wustl.edu	37	7	102988185	102988185	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	102988185	102988185	G	T	SNP	PSMC2	ENST00000292644	human	ensembl	74_37	+1	known	missense	c.27	p.Q9H	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC2	HGNC	ENSG00000161057				72	0	0	172	30	14.8515
GPER1	0	genome.wustl.edu	37	7	1132278	1132278	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	1132278	1132278	C	A	SNP	GPER1	ENST00000297469	human	ensembl	74_37	+1	known	missense	c.914	p.T305K	0.405	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPER1	HGNC	ENSG00000164850				129	0	0	136	27	16.5644
AKR1B10	0	genome.wustl.edu	37	7	134215525	134215525	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	134215525	134215525	A	G	SNP	AKR1B10	ENST00000359579	human	ensembl	74_37	+1	known	missense	c.197	p.K66R	0.998	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1B10	HGNC	ENSG00000198074				133	0	0	178	34	16.0377
PRSS1	0	genome.wustl.edu	37	7	142459815	142459815	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	142459815	142459815	G	A	SNP	PRSS1	ENST00000311737	human	ensembl	74_37	+1	known	missense	c.391	p.A131T	0.026	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS1	HGNC	ENSG00000204983				146	1	0.680272	235	26	9.96169
AGMO	0	genome.wustl.edu	37	7	15458194	15458194	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	15458194	15458194	T	C	SNP	AGMO	ENST00000342526	human	ensembl	74_37	-1	known	missense	c.598	p.I200V	1.000	pfam_Fatty_acid_hydroxylase	pfam_Fatty_acid_hydroxylase	-	no_errors	AGMO	HGNC	ENSG00000187546				33	0	0	57	11	16.1765
RBM33	0	genome.wustl.edu	37	7	155457902	155457902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	155457902	155457902	C	T	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	missense	c.77	p.A26V	1.000	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				77	0	0	53	13	19.697
SFRP4	0	genome.wustl.edu	37	7	37955825	37955825	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	37955825	37955825	G	A	SNP	SFRP4	ENST00000436072	human	ensembl	74_37	-1	known	silent	c.315	p.R105	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP4	HGNC	ENSG00000106483				64	0	0	51	53	50.9615
GLI3	0	genome.wustl.edu	37	7	42004495	42004495	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	42004495	42004495	G	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.4176	p.S1392R	0.039	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				110	0	0	85	50	37.037
GLI3	0	genome.wustl.edu	37	7	42005385	42005385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	42005385	42005385	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.3286	p.V1096M	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				128	0	0	177	29	14.0777
ABCA13	0	genome.wustl.edu	37	7	48314339	48314339	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	48314339	48314339	C	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.5076	p.F1692L	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				137	0	0	107	21	16.4062
ABCA13	0	genome.wustl.edu	37	7	48511147	48511147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	48511147	48511147	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.12926	p.R4309H	0.001	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				8	0	0	3	5	62.5
ZNF479	0	genome.wustl.edu	37	7	57187647	57187647	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	57187647	57187647	G	T	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	missense	c.1475	p.P492H	0.888	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				67	0	0	45	20	30.7692
ZNF12	0	genome.wustl.edu	37	7	6731976	6731976	+	Silent	SNP	A	A	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	6731976	6731976	A	G	SNP	ZNF12	ENST00000405858	human	ensembl	74_37	-1	known	silent	c.597	p.Y199	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631				46	0	0	42	24	36.3636
PCLO	0	genome.wustl.edu	37	7	82578926	82578926	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	82578926	82578926	C	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.10978	p.D3660Y	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				277	0	0	295	58	16.4306
SAMD9	0	genome.wustl.edu	37	7	92732584	92732584	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	92732584	92732584	C	T	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	missense	c.2827	p.G943R	0.997	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413				57	0	0	59	6	9.23077
SAMD9	0	genome.wustl.edu	37	7	92732585	92732585	+	Silent	SNP	T	T	C			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	7	92732585	92732585	T	C	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	silent	c.2826	p.L942	0.917	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413				58	0	0	60	6	9.09091
ADCY8	0	genome.wustl.edu	37	8	131793086	131793086	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	8	131793086	131793086	G	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	silent	c.3306	p.G1102	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				190	0	0	137	146	51.5901
FAM135B	0	genome.wustl.edu	37	8	139180179	139180179	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	8	139180179	139180179	G	A	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.1217	p.P406L	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				149	0	0	200	28	12.2807
COL22A1	0	genome.wustl.edu	37	8	139609182	139609182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	8	139609182	139609182	C	T	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.4397	p.R1466Q	0.991	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				182	0	0	216	31	12.5506
KCNK9	0	genome.wustl.edu	37	8	140630778	140630778	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	8	140630778	140630778	C	A	SNP	KCNK9	ENST00000303015	human	ensembl	74_37	-1	known	missense	c.848	p.R283L	1.000	pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK9,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427				80	0	0	117	21	15.2174
PLEC	0	genome.wustl.edu	37	8	144993781	144993781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	8	144993781	144993781	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.10619	p.R3540Q	0.132	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				48	0	0	84	26	23.6364
SLC25A37	0	genome.wustl.edu	37	8	23423697	23423697	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	8	23423697	23423697	G	A	SNP	SLC25A37	ENST00000519973	human	ensembl	74_37	+1	known	missense	c.287	p.R96Q	0.990	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A37	HGNC	ENSG00000147454				41	0	0	62	10	13.8889
CYP7B1	0	genome.wustl.edu	37	8	65527645	65527645	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	8	65527645	65527645	T	G	SNP	CYP7B1	ENST00000310193	human	ensembl	74_37	-1	known	missense	c.995	p.K332T	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817				98	0	0	73	10	12.0482
PREX2	0	genome.wustl.edu	37	8	69020559	69020559	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	8	69020559	69020559	G	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	silent	c.2931	p.S977	0.556	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				54	0	0	37	6	13.9535
ZFHX4	0	genome.wustl.edu	37	8	77618402	77618402	+	Silent	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	8	77618402	77618402	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	silent	c.2079	p.T693	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				61	0	0	84	13	13.4021
ZFHX4	0	genome.wustl.edu	37	8	77690512	77690512	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	8	77690512	77690512	C	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	nonsense	c.3162	p.Y1054*	1.000	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				168	1	0.591716	159	77	32.6271
ASTN2	0	genome.wustl.edu	37	9	119976675	119976675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	9	119976675	119976675	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.977	p.G326E	0.992	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				163	0	0	80	34	29.8246
UBAC1	0	genome.wustl.edu	37	9	138831533	138831533	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	9	138831533	138831533	G	A	SNP	UBAC1	ENST00000371756	human	ensembl	74_37	-1	known	nonsense	c.949	p.Q317*	1.000	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAC1	HGNC	ENSG00000130560				120	1	0.826446	45	26	36.6197
GLRA2	0	genome.wustl.edu	37	X	14708969	14708969	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	X	14708969	14708969	G	T	SNP	GLRA2	ENST00000218075	human	ensembl	74_37	+1	known	missense	c.1068	p.K356N	1.000	superfamily_Neurotrans-gated_channel_TM,prints_Glycine_rcpt_A2,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Glycine_rcpt_A2,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA2	HGNC	ENSG00000101958				48	0	0	26	28	51.8519
FLNA	0	genome.wustl.edu	37	X	153586887	153586887	+	Silent	SNP	G	G	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	X	153586887	153586887	G	T	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	silent	c.4524	p.T1508	0.101	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				56	0	0	33	26	44.0678
IGBP1-AS2	0	genome.wustl.edu	37	X	69368554	69368554	+	RNA	SNP	G	G	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	X	69368554	69368554	G	A	SNP	IGBP1-AS2	ENST00000403371	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IGBP1-AS2	HGNC	ENSG00000220925				17	0	0	3	5	62.5
KIAA2022	0	genome.wustl.edu	37	X	73963017	73963017	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	X	73963017	73963017	A	T	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.1375	p.C459S	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				66	0	0	30	19	38.7755
NOTCH2	0	genome.wustl.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	120612003	120612004	GG	-	DEL	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	frame_shift_del	c.18_17	p.P6fs	0.101:0.700	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				12	0	0	11	10	47.619
RPRD2	0	genome.wustl.edu	37	1	150445908	150445908	+	RNA	DEL	T	T	-			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	150445908	150445908	T	-	DEL	RPRD2	ENST00000492220	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.276	-	-	-	no_errors	RPRD2	HGNC	ENSG00000163125				15	0	0	14	2	12.5
CFHR5	0	genome.wustl.edu	37	1	196963208	196963210	+	Splice_Site	DEL	AGA	AGA	-			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	196963208	196963210	AGA	-	DEL	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	splice_site_del	c.503-2_503-1	e4-1	0.905:0.918:0.897	-	-	-	no_errors	CFHR5	HGNC	ENSG00000134389				73	0	0	63	27	30
MUL1	0	genome.wustl.edu	37	1	20827849	20827850	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	1	20827849	20827850	-	T	INS	MUL1	ENST00000264198	human	ensembl	74_37	-1	known	frame_shift_ins	c.393_392	p.H131fs	0.956:1.000	pfam_MULAN	pfam_MULAN,pfscan_Znf_RING	-	no_errors	MUL1	HGNC	ENSG00000090432				137	0	0	66	35	34.6535
EP400	0	genome.wustl.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAG			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	12	132547093	132547094	-	CAG	INS	EP400	ENST00000333577	human	ensembl	74_37	+1	known	in_frame_ins	c.8289_8290	p.2767in_frame_insQ	0.900:0.920	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				81	0	0	82	12	12.766
ATMIN	0	genome.wustl.edu	37	16	81075923	81075926	+	Frame_Shift_Del	DEL	GTAG	GTAG	-			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	GTAG	GTAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	16	81075923	81075926	GTAG	-	DEL	ATMIN	ENST00000299575	human	ensembl	74_37	+1	known	frame_shift_del	c.500_503	p.C167fs	1.000:0.444:0.444:0.415	smart_Znf_C2H2-like	smart_Znf_C2H2-like	-	no_errors	ATMIN	HGNC	ENSG00000166454				209	0	0	128	30	18.9873
TRIM37	0	genome.wustl.edu	37	17	57109355	57109364	+	Frame_Shift_Del	DEL	AATGGATCAA	AATGGATCAA	-			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	AATGGATCAA	AATGGATCAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	17	57109355	57109364	AATGGATCAA	-	DEL	TRIM37	ENST00000262294	human	ensembl	74_37	-1	known	frame_shift_del	c.1850_1841	p.I614fs	1.000:0.996:0.988:1.000:1.000:1.000:1.000:1.000:0.998:1.000	NULL	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC	ENSG00000108395				192	0	0	141	24	14.5455
LRP1B	0	genome.wustl.edu	37	2	141079617	141079617	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	141079617	141079617	G	-	DEL	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	frame_shift_del	c.12555	p.L4186fs	0.965	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				88	0	0	33	2	5.71429
MTERFD2	0	genome.wustl.edu	37	2	242035525	242035530	+	In_Frame_Del	DEL	TCATCC	TCATCC	-			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	TCATCC	TCATCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	242035525	242035530	TCATCC	-	DEL	MTERFD2	ENST00000241527	human	ensembl	74_37	-1	known	in_frame_del	c.1034_1029	p.ED343in_frame_del	0.003:0.009:0.009:0.025:0.022:0.018	NULL	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD2	HGNC	ENSG00000122085				72	0	0	68	18	20.9302
EHBP1	0	genome.wustl.edu	37	2	63092028	63092029	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	2	63092028	63092029	-	A	INS	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	frame_shift_ins	c.1025_1026	p.N344fs	1.000:1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504				93	0	0	96	18	15.7895
DEFB118	0	genome.wustl.edu	37	20	29960672	29960672	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	20	29960672	29960672	A	-	DEL	DEFB118	ENST00000253381	human	ensembl	74_37	+1	known	frame_shift_del	c.71	p.K26fs	0.000	NULL	NULL	-	no_errors	DEFB118	HGNC	ENSG00000131068				52	0	0	100	10	9.09091
TMEM39A	0	genome.wustl.edu	37	3	119165885	119165886	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	3	119165885	119165886	-	T	INS	TMEM39A	ENST00000319172	human	ensembl	74_37	-1	known	frame_shift_ins	c.555_554	p.N185fs	1.000:1.000	pfam_Uncharacterised_TMEM39	pfam_Uncharacterised_TMEM39	-	no_errors	TMEM39A	HGNC	ENSG00000176142				86	0	0	25	31	55.3571
HSP90AA4P	0	genome.wustl.edu	37	4	190395839	190395839	+	RNA	DEL	A	A	-			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	4	190395839	190395839	A	-	DEL	HSP90AA4P	ENST00000378770	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSP90AA4P	HGNC	ENSG00000205100				22	0	0	10	6	37.5
ZFPM2	0	genome.wustl.edu	37	8	106815342	106815342	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	8	106815342	106815342	A	-	DEL	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	frame_shift_del	c.3032	p.N1012fs	0.862	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				72	0	0	51	15	22.7273
ADAMTSL1	0	genome.wustl.edu	37	9	18474284	18474284	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8483-01A-31D-2394-08	TCGA-BR-8483-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1d30fed9-42a2-4523-9ac6-651c6ff7415f	03d0314b-41e2-44e2-b2be-c9aa8c2eee2b	9	18474284	18474284	C	-	DEL	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	frame_shift_del	c.54	p.L19fs	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				155	0	0	57	19	25
