Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TAS1R3	0	genome.wustl.edu	37	1	1267838	1267838	+	Silent	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	1267838	1267838	C	T	SNP	TAS1R3	ENST00000339381	human	ensembl	74_37	+1	known	silent	c.927	p.V309	0.009	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962				34	0	0	34	5	12.8205
ENSG00000203849	0	genome.wustl.edu	37	1	142713705	142713705	+	RNA	SNP	C	C	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	142713705	142713705	C	G	SNP	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849				19	0	0	53	11	17.1875
LCE2A	0	genome.wustl.edu	37	1	152671675	152671675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	152671675	152671675	C	T	SNP	LCE2A	ENST00000368779	human	ensembl	74_37	+1	known	missense	c.298	p.H100Y	0.001	NULL	NULL	-	no_errors	LCE2A	HGNC	ENSG00000187173				162	0	0	113	14	11.0236
FCRL3	0	genome.wustl.edu	37	1	157668421	157668421	+	Splice_Site	SNP	T	T	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	157668421	157668421	T	G	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	splice_site	c.53-2	e3-2	0.048	-	-	-	no_errors	FCRL3	HGNC	ENSG00000160856				57	0	0	60	5	7.69231
CASP9	0	genome.wustl.edu	37	1	15831220	15831220	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	15831220	15831220	C	T	SNP	CASP9	ENST00000333868	human	ensembl	74_37	-1	known	missense	c.754	p.G252S	1.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP9	HGNC	ENSG00000132906				92	0	0	92	11	10.6796
OR10X1	0	genome.wustl.edu	37	1	158549445	158549445	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	158549445	158549445	A	G	SNP	OR10X1	ENST00000368150	human	ensembl	74_37	-1	known	missense	c.245	p.L82P	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10X1	HGNC	ENSG00000186400				74	0	0	73	18	19.7802
OR6N2	0	genome.wustl.edu	37	1	158746982	158746982	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	158746982	158746982	A	T	SNP	OR6N2	ENST00000339258	human	ensembl	74_37	-1	known	nonsense	c.444	p.C148*	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N2	HGNC	ENSG00000188340				99	0	0	80	9	10.1124
ATP1A4	0	genome.wustl.edu	37	1	160136459	160136459	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	160136459	160136459	G	A	SNP	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	missense	c.1189	p.A397T	1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				150	0	0	95	24	20.1681
SPEN	0	genome.wustl.edu	37	1	16262482	16262482	+	Silent	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	16262482	16262482	C	T	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	silent	c.9747	p.P3249	0.005	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				41	0	0	19	33	63.4615
TNR	0	genome.wustl.edu	37	1	175334354	175334354	+	Silent	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	175334354	175334354	A	G	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	silent	c.2379	p.T793	0.993	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				52	0	0	56	5	8.19672
LAMC1	0	genome.wustl.edu	37	1	183099510	183099510	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	183099510	183099510	G	A	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	silent	c.3312	p.Q1104	1.000	NULL	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				95	0	0	81	15	15.625
BRINP3	0	genome.wustl.edu	37	1	190067640	190067640	+	Silent	SNP	T	T	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	190067640	190067640	T	C	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	silent	c.1809	p.L603	0.878	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				256	0	0	296	29	8.92308
RPS10P7	0	genome.wustl.edu	37	1	201489416	201489416	+	RNA	SNP	C	C	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	201489416	201489416	C	G	SNP	RPS10P7	ENST00000441932	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPS10P7	HGNC	ENSG00000223396				36	0	0	37	4	9.7561
RYR2	0	genome.wustl.edu	37	1	237993784	237993784	+	RNA	SNP	T	T	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	237993784	237993784	T	G	SNP	RYR2	ENST00000462585	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RYR2	HGNC	ENSG00000198626				50	0	0	59	9	13.2353
ZP4	0	genome.wustl.edu	37	1	238053765	238053765	+	Silent	SNP	A	A	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	238053765	238053765	A	T	SNP	ZP4	ENST00000366570	human	ensembl	74_37	-1	known	silent	c.171	p.A57	0.053	NULL	pfam_ZP_dom,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP4	HGNC	ENSG00000116996				71	0	0	53	5	8.62069
OR2L5	0	genome.wustl.edu	37	1	248185512	248185512	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	248185512	248185512	A	G	SNP	OR2L5	ENST00000355281	human	ensembl	74_37	+1	known	missense	c.263	p.N88S	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L5	HGNC	ENSG00000197454				159	0	0	193	24	11.0599
C1orf174	0	genome.wustl.edu	37	1	3807161	3807161	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	3807161	3807161	C	T	SNP	C1orf174	ENST00000361605	human	ensembl	74_37	-1	known	missense	c.590	p.R197Q	0.935	NULL	NULL	-	no_errors	C1orf174	HGNC	ENSG00000198912				103	1	0.961538	55	58	51.3274
ERI3	0	genome.wustl.edu	37	1	44687311	44687311	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	44687311	44687311	G	A	SNP	ERI3	ENST00000372257	human	ensembl	74_37	-1	known	silent	c.933	p.D311	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	ERI3	HGNC	ENSG00000117419				67	0	0	36	6	14.2857
ELAVL4	0	genome.wustl.edu	37	1	50659546	50659546	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	50659546	50659546	A	G	SNP	ELAVL4	ENST00000371821	human	ensembl	74_37	+1	known	missense	c.479	p.Y160C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL4	HGNC	ENSG00000162374				153	0	0	155	9	5.4878
LPHN2	0	genome.wustl.edu	37	1	82456476	82456476	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	82456476	82456476	G	C	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.4072	p.V1358L	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				123	0	0	103	11	9.64912
TGFBR3	0	genome.wustl.edu	37	1	92195368	92195368	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	1	92195368	92195368	G	A	SNP	TGFBR3	ENST00000212355	human	ensembl	74_37	-1	known	missense	c.731	p.P244L	1.000	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	TGFBR3	HGNC	ENSG00000069702				121	0	0	94	5	5.05051
PNLIPRP2	0	genome.wustl.edu	37	10	118385511	118385511	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	10	118385511	118385511	C	T	SNP	PNLIPRP2	ENST00000537242	human	ensembl	74_37	+1	known	missense	c.259	p.R87C	1.000	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,prints_Lipase_panc,prints_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipase_panc,prints_Lipase,pfscan_PLAT/LH2_dom	-	no_errors	PNLIPRP2	HGNC	ENSG00000165862				44	0	0	41	5	10.8696
MCMBP	0	genome.wustl.edu	37	10	121617037	121617037	+	RNA	SNP	T	T	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	10	121617037	121617037	T	G	SNP	MCMBP	ENST00000495407	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.359	-	-	-	no_errors	MCMBP	HGNC	ENSG00000197771				13	0	0	10	7	41.1765
C10orf90	0	genome.wustl.edu	37	10	128193306	128193306	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	10	128193306	128193306	C	A	SNP	C10orf90	ENST00000544758	human	ensembl	74_37	-1	known	missense	c.754	p.V252L	0.003	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493				156	0	0	74	4	5.12821
SKIDA1	0	genome.wustl.edu	37	10	21804403	21804403	+	Silent	SNP	T	T	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	10	21804403	21804403	T	C	SNP	SKIDA1	ENST00000449193	human	ensembl	74_37	-1	known	silent	c.2349	p.T783	0.995	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	SKIDA1	HGNC	ENSG00000180592				100	0	0	93	48	34.0426
PCDH15	0	genome.wustl.edu	37	10	55721560	55721560	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	10	55721560	55721560	T	A	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.2961	p.R987S	0.970	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				59	0	0	81	8	8.98876
ZNF365	0	genome.wustl.edu	37	10	64415333	64415333	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	10	64415333	64415333	G	A	SNP	ZNF365	ENST00000395251	human	ensembl	74_37	+1	known	silent	c.333	p.S111	0.025	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311				90	0	0	81	5	5.81395
STOX1	0	genome.wustl.edu	37	10	70645465	70645465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	10	70645465	70645465	C	T	SNP	STOX1	ENST00000298596	human	ensembl	74_37	+1	known	missense	c.1913	p.P638L	0.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730				130	0	0	106	15	12.3967
CDH23	0	genome.wustl.edu	37	10	73269927	73269927	+	Silent	SNP	T	T	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	10	73269927	73269927	T	C	SNP	CDH23	ENST00000461841	human	ensembl	74_37	+1	known	silent	c.369	p.F123	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				111	0	0	67	10	12.987
LRIT1	0	genome.wustl.edu	37	10	85991896	85991896	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	10	85991896	85991896	C	G	SNP	LRIT1	ENST00000372105	human	ensembl	74_37	-1	known	missense	c.1659	p.Q553H	0.002	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRIT1	HGNC	ENSG00000148602				64	0	0	34	7	17.0732
GRID1	0	genome.wustl.edu	37	10	87966203	87966203	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	10	87966203	87966203	G	A	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	silent	c.438	p.P146	0.004	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771				114	0	0	33	28	45.9016
MYOF	0	genome.wustl.edu	37	10	95119649	95119649	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	10	95119649	95119649	G	A	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	nonsense	c.3061	p.R1021*	0.998	smart_Peroxin/Ferlin	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				126	0	0	98	8	7.54717
IL18	0	genome.wustl.edu	37	11	112014479	112014479	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	11	112014479	112014479	C	T	SNP	IL18	ENST00000280357	human	ensembl	74_37	-1	known	missense	c.422	p.S141N	0.000	pfam_IL-1,superfamily_Cytokine_IL1-like,pirsf_IL-18	pfam_IL-1,superfamily_Cytokine_IL1-like,pirsf_IL-18,prints_IL-18	-	no_errors	IL18	HGNC	ENSG00000150782				24	0	0	42	7	14.2857
OR8D2	0	genome.wustl.edu	37	11	124189480	124189480	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	11	124189480	124189480	A	C	SNP	OR8D2	ENST00000357438	human	ensembl	74_37	-1	known	missense	c.614	p.V205G	0.011	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D2	HGNC	ENSG00000197263				71	0	0	111	9	7.5
ODF3	0	genome.wustl.edu	37	11	197612	197612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	11	197612	197612	G	A	SNP	ODF3	ENST00000325113	human	ensembl	74_37	+1	known	missense	c.161	p.R54H	0.744	NULL	pfam_SHIPPO-rpt	-	no_errors	ODF3	HGNC	ENSG00000177947				95	0	0	52	6	10.3448
SLC17A6	0	genome.wustl.edu	37	11	22391671	22391671	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	11	22391671	22391671	T	G	SNP	SLC17A6	ENST00000263160	human	ensembl	74_37	+1	known	missense	c.978	p.F326L	0.992	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664				36	0	0	42	12	22.2222
OR9G4	0	genome.wustl.edu	37	11	56511209	56511209	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	11	56511209	56511209	A	C	SNP	OR9G4	ENST00000302957	human	ensembl	74_37	-1	known	missense	c.79	p.F27V	0.978	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9G4	HGNC	ENSG00000172457				83	0	0	94	5	5.05051
DLG2	0	genome.wustl.edu	37	11	83641522	83641522	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	11	83641522	83641522	G	A	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	missense	c.1345	p.P449S	1.000	pfam_PDZ_assoc,pirsf_M-assoc_guanylate_kinase	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				93	0	0	72	6	7.69231
DNAH10	0	genome.wustl.edu	37	12	124359954	124359954	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	12	124359954	124359954	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	silent	c.7761	p.S2587	0.001	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				42	0	0	55	11	16.6667
COL4A1	0	genome.wustl.edu	37	13	110829307	110829307	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	13	110829307	110829307	G	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.2794	p.P932S	0.964	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				101	0	0	81	8	8.98876
PCDH17	0	genome.wustl.edu	37	13	58207332	58207332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	13	58207332	58207332	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.652	p.G218S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				82	0	0	65	7	9.72222
PCDH20	0	genome.wustl.edu	37	13	61987973	61987973	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	13	61987973	61987973	C	T	SNP	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	missense	c.259	p.E87K	0.147	pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991				43	0	0	8	7	46.6667
MIR323B	0	genome.wustl.edu	37	14	101522556	101522556	+	RNA	SNP	T	T	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	14	101522556	101522556	T	C	SNP	MIR323B	ENST00000385269	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.109	-	-	-	no_errors	MIR323B	HGNC	ENSG00000208004				59	0	0	35	2	5.40541
MYH7	0	genome.wustl.edu	37	14	23899793	23899793	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	14	23899793	23899793	G	A	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	silent	c.975	p.D325	0.867	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				38	0	0	15	8	34.7826
AKAP6	0	genome.wustl.edu	37	14	33046439	33046439	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	14	33046439	33046439	G	A	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	silent	c.2460	p.E820	1.000	smart_Spectrin/alpha-actinin	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				116	0	0	108	13	10.7438
ENSG00000259596	0	genome.wustl.edu	37	15	22751806	22751806	+	RNA	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	15	22751806	22751806	A	G	SNP	ENSG00000259596	ENST00000560026	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.161	-	-	-	no_errors	RP11-566K19.3	Clone_based_vega_gene	ENSG00000259596				73	0	0	41	18	30.5085
SEMA6D	0	genome.wustl.edu	37	15	48055278	48055278	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	15	48055278	48055278	G	A	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	missense	c.724	p.V242I	0.999	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				27	0	0	24	6	20
FBN1	0	genome.wustl.edu	37	15	48782113	48782113	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	15	48782113	48782113	T	C	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.3017	p.E1006G	0.997	pfam_TB_dom,superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				134	0	0	89	18	16.8224
PLEKHO2	0	genome.wustl.edu	37	15	65153690	65153690	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	15	65153690	65153690	G	A	SNP	PLEKHO2	ENST00000323544	human	ensembl	74_37	+1	known	silent	c.399	p.K133	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHO2	HGNC	ENSG00000241839				19	0	0	8	3	27.2727
LOC729739	0	genome.wustl.edu	37	15	74654248	74654248	+	RNA	SNP	T	T	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	15	74654248	74654248	T	G	SNP	LOC729739	ENST00000562009	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.863	-	-	-	no_errors	CTD-2311M21.2	Clone_based_vega_gene	ENSG00000260266				94	0	0	96	21	17.9487
PHKG2	0	genome.wustl.edu	37	16	30768205	30768205	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	16	30768205	30768205	G	A	SNP	PHKG2	ENST00000563588	human	ensembl	74_37	+1	known	silent	c.1008	p.L336	0.798	superfamily_Kinase-like_dom,prints_Phosph_kin_gamma	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Phosph_kin_gamma,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PHKG2	HGNC	ENSG00000156873				207	0	0	102	38	27.1429
LPCAT2	0	genome.wustl.edu	37	16	55608610	55608610	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	16	55608610	55608610	A	T	SNP	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	missense	c.1283	p.N428I	1.000	pfscan_EF_hand_dom	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253				100	0	0	64	13	16.8831
TMEM231	0	genome.wustl.edu	37	16	75574030	75574030	+	Silent	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	16	75574030	75574030	C	T	SNP	TMEM231	ENST00000568377	human	ensembl	74_37	-1	known	silent	c.900	p.V300	1.000	pfam_TMEM231	pfam_TMEM231	-	no_errors	TMEM231	HGNC	ENSG00000205084				29	0	0	33	3	8.33333
OR1D4	0	genome.wustl.edu	37	17	3144532	3144532	+	RNA	SNP	C	C	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	17	3144532	3144532	C	A	SNP	OR1D4	ENST00000531680	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.130	-	-	-	no_errors	OR1D4	HGNC	ENSG00000255095				38	0	0	29	5	14.7059
DHX58	0	genome.wustl.edu	37	17	40257163	40257163	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	17	40257163	40257163	T	C	SNP	DHX58	ENST00000251642	human	ensembl	74_37	-1	known	missense	c.1274	p.Q425R	0.272	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX58	HGNC	ENSG00000108771				42	0	0	35	3	7.89474
CDC27	0	genome.wustl.edu	37	17	45234367	45234367	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	17	45234367	45234367	A	T	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	missense	c.754	p.S252T	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897				57	0	0	59	4	6.34921
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				132	1	0.75188	34	28	45.1613
CNTROB	0	genome.wustl.edu	37	17	7843053	7843053	+	Silent	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	17	7843053	7843053	C	T	SNP	CNTROB	ENST00000380262	human	ensembl	74_37	+1	known	silent	c.1150	p.L384	0.252	NULL	NULL	-	no_errors	CNTROB	HGNC	ENSG00000170037				84	0	0	46	5	9.80392
CCDC178	0	genome.wustl.edu	37	18	30926368	30926368	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	18	30926368	30926368	C	G	SNP	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	missense	c.465	p.K155N	0.411	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				47	0	0	47	17	26.5625
ZNF625	0	genome.wustl.edu	37	19	12256938	12256938	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	19	12256938	12256938	C	A	SNP	ZNF625	ENST00000439556	human	ensembl	74_37	-1	known	missense	c.293	p.R98L	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	HGNC	ENSG00000257591				74	0	0	70	7	9.09091
ZNF208	0	genome.wustl.edu	37	19	22156673	22156673	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	19	22156673	22156673	T	G	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.1163	p.K388T	0.006	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				36	0	0	50	5	9.09091
ZNF729	0	genome.wustl.edu	37	19	22497988	22497988	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	19	22497988	22497988	A	G	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.1769	p.H590R	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				13	0	0	23	8	25.8065
PSG11	0	genome.wustl.edu	37	19	43523024	43523024	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	19	43523024	43523024	A	G	SNP	PSG11	ENST00000320078	human	ensembl	74_37	-1	known	missense	c.607	p.F203L	0.022	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG11	HGNC	ENSG00000243130				464	0	0	446	45	9.16497
HAS1	0	genome.wustl.edu	37	19	52222534	52222534	+	Silent	SNP	C	C	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	19	52222534	52222534	C	A	SNP	HAS1	ENST00000601714	human	ensembl	74_37	-1	known	silent	c.648	p.A216	0.998	pfam_Glyco_trans_2	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509				84	0	0	40	6	13.0435
ZNF845	0	genome.wustl.edu	37	19	53855529	53855529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	19	53855529	53855529	G	A	SNP	ZNF845	ENST00000458035	human	ensembl	74_37	+1	known	missense	c.1601	p.R534Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF845	HGNC	ENSG00000213799				68	0	0	77	9	10.4651
MUC16	0	genome.wustl.edu	37	19	9010988	9010988	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	19	9010988	9010988	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.38930	p.S12977F	0.003	smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				142	0	0	128	10	7.24638
DPP10	0	genome.wustl.edu	37	2	116538507	116538507	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	2	116538507	116538507	A	C	SNP	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	missense	c.1431	p.E477D	0.972	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497				37	0	0	79	5	5.95238
ACVR2A	0	genome.wustl.edu	37	2	148602741	148602741	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	2	148602741	148602741	T	A	SNP	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	nonsense	c.20	p.L7*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				124	0	0	44	23	34.3284
MAP2	0	genome.wustl.edu	37	2	210560980	210560980	+	Silent	SNP	T	T	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	2	210560980	210560980	T	C	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.4086	p.S1362	0.345	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				135	0	0	107	7	6.14035
WNT10A	0	genome.wustl.edu	37	2	219746932	219746932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	2	219746932	219746932	C	T	SNP	WNT10A	ENST00000258411	human	ensembl	74_37	+1	known	missense	c.163	p.L55F	1.000	NULL	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10A	HGNC	ENSG00000135925				88	0	0	41	16	28.0702
POLR1A	0	genome.wustl.edu	37	2	86315780	86315780	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	2	86315780	86315780	G	A	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	silent	c.639	p.S213	0.008	pfam_RNA_pol_Rpb1_1	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				107	0	0	63	5	7.35294
PTCD3	0	genome.wustl.edu	37	2	86364655	86364655	+	Silent	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	2	86364655	86364655	C	T	SNP	PTCD3	ENST00000254630	human	ensembl	74_37	+1	known	silent	c.2043	p.S681	0.762	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300				58	0	0	59	5	7.8125
SIRPB2	0	genome.wustl.edu	37	20	1457910	1457910	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	20	1457910	1457910	C	A	SNP	SIRPB2	ENST00000537284	human	ensembl	74_37	-1	known	missense	c.518	p.G173V	0.001	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SIRPB2	HGNC	ENSG00000196209				82	0	0	79	5	5.95238
ADRA1D	0	genome.wustl.edu	37	20	4228874	4228874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	20	4228874	4228874	C	T	SNP	ADRA1D	ENST00000379453	human	ensembl	74_37	-1	known	missense	c.731	p.R244H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_ADRA1D_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	ADRA1D	HGNC	ENSG00000171873				17	0	0	15	4	21.0526
SULF2	0	genome.wustl.edu	37	20	46290516	46290516	+	Splice_Site	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	20	46290516	46290516	C	T	SNP	SULF2	ENST00000359930	human	ensembl	74_37	-1	known	splice_site	c.2494+1	e17+1	1.000	-	-	-	no_errors	SULF2	HGNC	ENSG00000196562				157	0	0	177	15	7.8125
SULF2	0	genome.wustl.edu	37	20	46331299	46331299	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	20	46331299	46331299	G	A	SNP	SULF2	ENST00000359930	human	ensembl	74_37	-1	known	silent	c.531	p.N177	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562				63	0	0	54	6	10
RBBP8NL	0	genome.wustl.edu	37	20	60989194	60989194	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	20	60989194	60989194	C	A	SNP	RBBP8NL	ENST00000252998	human	ensembl	74_37	-1	known	missense	c.1213	p.A405S	0.001	NULL	pfam_CtIP_N	-	no_errors	RBBP8NL	HGNC	ENSG00000130701				27	0	0	21	2	8.69565
HAO1	0	genome.wustl.edu	37	20	7915153	7915153	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	20	7915153	7915153	G	A	SNP	HAO1	ENST00000378789	human	ensembl	74_37	-1	known	silent	c.267	p.D89	0.946	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO1	HGNC	ENSG00000101323				185	1	0.537634	141	9	6
KCNE1	0	genome.wustl.edu	37	21	35821821	35821821	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	21	35821821	35821821	T	C	SNP	KCNE1	ENST00000337385	human	ensembl	74_37	-1	known	missense	c.112	p.S38G	0.000	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE1	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE1,prints_K_chnl_volt-dep_bsu_KCNE	-	no_errors	KCNE1	HGNC	ENSG00000180509				105	1	0.943396	49	4	7.54717
ADARB1	0	genome.wustl.edu	37	21	46602544	46602544	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	21	46602544	46602544	A	G	SNP	ADARB1	ENST00000360697	human	ensembl	74_37	+1	known	missense	c.1123	p.T375A	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,superfamily_Cytokine_IL1-like,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381				48	0	0	42	8	16
CACNA1I	0	genome.wustl.edu	37	22	40037148	40037148	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	22	40037148	40037148	C	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.1017	p.N339K	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				129	0	0	45	24	34.7826
TTLL12	0	genome.wustl.edu	37	22	43567876	43567876	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	22	43567876	43567876	G	A	SNP	TTLL12	ENST00000216129	human	ensembl	74_37	-1	known	silent	c.1524	p.Y508	0.237	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL12	HGNC	ENSG00000100304				55	0	0	32	3	8.57143
GPR149	0	genome.wustl.edu	37	3	154146457	154146457	+	Silent	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	3	154146457	154146457	C	T	SNP	GPR149	ENST00000389740	human	ensembl	74_37	-1	known	silent	c.948	p.A316	0.038	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR149	HGNC	ENSG00000174948				225	0	0	220	21	8.71369
FXR1	0	genome.wustl.edu	37	3	180666236	180666236	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	3	180666236	180666236	T	A	SNP	FXR1	ENST00000357559	human	ensembl	74_37	+1	known	missense	c.372	p.N124K	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,superfamily_NA-bd_OB-fold,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR1	HGNC	ENSG00000114416				40	0	0	66	5	7.04225
ZNF860	0	genome.wustl.edu	37	3	32031024	32031024	+	Silent	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	3	32031024	32031024	C	T	SNP	ZNF860	ENST00000360311	human	ensembl	74_37	+1	known	silent	c.453	p.I151	0.722	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF860	HGNC	ENSG00000197385				88	0	0	95	6	5.94059
SCLT1	0	genome.wustl.edu	37	4	129867285	129867285	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	4	129867285	129867285	T	C	SNP	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	missense	c.1316	p.N439S	0.994	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				22	0	0	33	5	13.1579
USP38	0	genome.wustl.edu	37	4	144106972	144106972	+	Silent	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	4	144106972	144106972	C	T	SNP	USP38	ENST00000307017	human	ensembl	74_37	+1	known	silent	c.369	p.L123	0.948	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP38	HGNC	ENSG00000170185				96	0	0	64	11	14.6667
BST1	0	genome.wustl.edu	37	4	15733454	15733454	+	Silent	SNP	A	A	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	4	15733454	15733454	A	C	SNP	BST1	ENST00000265016	human	ensembl	74_37	+1	known	silent	c.943	p.R315	0.002	NULL	pfam_ADP-ribosyl_cyclase	-	no_errors	BST1	HGNC	ENSG00000109743				25	0	0	24	3	11.1111
FRG1	0	genome.wustl.edu	37	4	190878577	190878577	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	4	190878577	190878577	A	G	SNP	FRG1	ENST00000226798	human	ensembl	74_37	+1	known	missense	c.457	p.N153D	1.000	pfam_FRG1,superfamily_Actin_cross-linking	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FRG1	HGNC	ENSG00000109536				36	0	0	49	5	9.25926
CWH43	0	genome.wustl.edu	37	4	49032878	49032878	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	4	49032878	49032878	C	G	SNP	CWH43	ENST00000226432	human	ensembl	74_37	+1	known	missense	c.1409	p.S470C	1.000	superfamily_Endo/exonuclease/phosphatase	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182				78	0	0	92	28	23.3333
CYFIP2	0	genome.wustl.edu	37	5	156753275	156753275	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	5	156753275	156753275	G	A	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	silent	c.2154	p.E718	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163				99	0	0	84	13	13.4021
HK3	0	genome.wustl.edu	37	5	176308118	176308118	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	5	176308118	176308118	C	A	SNP	HK3	ENST00000292432	human	ensembl	74_37	-1	known	missense	c.2728	p.V910F	1.000	pfam_Hexokinase_C,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883				77	0	0	23	6	20.6897
HTR1A	0	genome.wustl.edu	37	5	63256317	63256317	+	Silent	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	5	63256317	63256317	C	T	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	silent	c.1230	p.A410	0.003	prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				317	0	0	274	16	5.51724
ASCC3	0	genome.wustl.edu	37	6	101296227	101296227	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	6	101296227	101296227	G	T	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.598	p.L200M	0.998	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				51	0	0	76	5	6.17284
LAMA4	0	genome.wustl.edu	37	6	112528344	112528344	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	6	112528344	112528344	G	A	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	silent	c.300	p.H100	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				72	0	0	67	6	8.21918
ROS1	0	genome.wustl.edu	37	6	117662377	117662377	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	6	117662377	117662377	G	A	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	missense	c.5000	p.P1667L	0.991	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				49	0	0	89	6	6.31579
HIST1H3H	0	genome.wustl.edu	37	6	27778143	27778143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	6	27778143	27778143	G	A	SNP	HIST1H3H	ENST00000369163	human	ensembl	74_37	+1	known	missense	c.292	p.E98K	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3H	HGNC	ENSG00000203813				100	1	0.990099	54	11	16.9231
BAI3	0	genome.wustl.edu	37	6	69943236	69943236	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	6	69943236	69943236	T	G	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.2535	p.D845E	1.000	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				172	0	0	139	50	26.455
FHL5	0	genome.wustl.edu	37	6	97058574	97058574	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	6	97058574	97058574	G	A	SNP	FHL5	ENST00000326771	human	ensembl	74_37	+1	known	missense	c.631	p.V211M	0.004	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL5	HGNC	ENSG00000112214				159	1	0.625	155	22	12.4294
CFTR	0	genome.wustl.edu	37	7	117232021	117232021	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	7	117232021	117232021	G	A	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	silent	c.1800	p.R600	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626				48	0	0	87	8	8.42105
KCND2	0	genome.wustl.edu	37	7	120373007	120373007	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	7	120373007	120373007	T	C	SNP	KCND2	ENST00000331113	human	ensembl	74_37	+1	known	missense	c.1166	p.I389T	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408				77	0	0	70	12	14.6341
CHRM2	0	genome.wustl.edu	37	7	136699939	136699939	+	Silent	SNP	C	C	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	7	136699939	136699939	C	G	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	silent	c.327	p.A109	0.972	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072				142	0	0	134	22	14.1026
DGKI	0	genome.wustl.edu	37	7	137075949	137075949	+	RNA	SNP	T	T	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	7	137075949	137075949	T	G	SNP	DGKI	ENST00000477835	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DGKI	HGNC	ENSG00000157680				99	0	0	84	20	19.2308
KCNH2	0	genome.wustl.edu	37	7	150654535	150654535	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	7	150654535	150654535	G	A	SNP	KCNH2	ENST00000262186	human	ensembl	74_37	-1	known	silent	c.972	p.L324	0.945	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118				63	0	0	26	6	18.75
SHH	0	genome.wustl.edu	37	7	155599103	155599103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	7	155599103	155599103	G	A	SNP	SHH	ENST00000297261	human	ensembl	74_37	-1	known	missense	c.449	p.T150M	1.000	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,prints_Hedgehog	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,prints_Hedgehog,pfscan_Intein_splice_site	-	no_errors	SHH	HGNC	ENSG00000164690				136	0	0	60	16	21.0526
POM121	0	genome.wustl.edu	37	7	72413896	72413896	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	7	72413896	72413896	A	G	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	missense	c.3364	p.T1122A	0.152	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313				42	0	0	24	4	14.2857
PCLO	0	genome.wustl.edu	37	7	82544523	82544523	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	7	82544523	82544523	A	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.12779	p.L4260R	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				18	0	0	20	3	13.0435
STAG3	0	genome.wustl.edu	37	7	99808776	99808776	+	Silent	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	7	99808776	99808776	A	G	SNP	STAG3	ENST00000317296	human	ensembl	74_37	+1	known	silent	c.3381	p.E1127	0.836	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG3	HGNC	ENSG00000066923				112	0	0	62	9	12.6761
FBXO43	0	genome.wustl.edu	37	8	101149837	101149837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	8	101149837	101149837	G	A	SNP	FBXO43	ENST00000428847	human	ensembl	74_37	-1	known	missense	c.1630	p.R544W	0.766	NULL	pfam_Znf_C6HC,superfamily_F-box_dom,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509				27	0	0	30	11	26.8293
FAM86B2	0	genome.wustl.edu	37	8	12283473	12283473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	8	12283473	12283473	C	T	SNP	FAM86B2	ENST00000393715	human	ensembl	74_37	-1	known	missense	c.376	p.G126R	0.000	NULL	NULL	-	no_errors	FAM86B2	HGNC	ENSG00000145002				10	0	0	6	7	53.8462
RHOBTB2	0	genome.wustl.edu	37	8	22868070	22868070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	8	22868070	22868070	G	A	SNP	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	missense	c.1640	p.S547N	0.998	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				176	0	0	128	8	5.88235
XKR4	0	genome.wustl.edu	37	8	56270253	56270253	+	Silent	SNP	A	A	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	8	56270253	56270253	A	T	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	silent	c.822	p.I274	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				70	0	0	62	10	13.8889
NIPAL2	0	genome.wustl.edu	37	8	99205172	99205172	+	RNA	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	8	99205172	99205172	C	T	SNP	NIPAL2	ENST00000520545	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.023	-	-	-	no_errors	NIPAL2	HGNC	ENSG00000104361				35	0	0	40	15	27.2727
LAMC3	0	genome.wustl.edu	37	9	133932371	133932371	+	Silent	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	9	133932371	133932371	G	A	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.1995	p.P665	0.000	pfam_Laminin_B_type_IV,smart_EGF_laminin,pfscan_Laminin_B_type_IV	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				200	0	0	93	18	16.2162
IFNA10	0	genome.wustl.edu	37	9	21206570	21206570	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	9	21206570	21206570	G	A	SNP	IFNA10	ENST00000357374	human	ensembl	74_37	-1	known	missense	c.527	p.S176L	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA10	HGNC	ENSG00000186803				283	0	0	229	130	36.2117
SMARCA2	0	genome.wustl.edu	37	9	2123850	2123850	+	Silent	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	9	2123850	2123850	A	G	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	silent	c.3894	p.E1298	0.571	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				24	0	0	9	4	30.7692
KIF24	0	genome.wustl.edu	37	9	34257621	34257621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	9	34257621	34257621	G	A	SNP	KIF24	ENST00000379166	human	ensembl	74_37	-1	known	missense	c.1984	p.P662S	0.000	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_P-loop_NTPase,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638				98	0	0	74	12	13.9535
FRMPD1	0	genome.wustl.edu	37	9	37745803	37745803	+	Silent	SNP	A	A	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	9	37745803	37745803	A	G	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	silent	c.3774	p.E1258	0.000	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				123	0	0	93	5	5.10204
SHC3	0	genome.wustl.edu	37	9	91657058	91657058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	9	91657058	91657058	C	T	SNP	SHC3	ENST00000375835	human	ensembl	74_37	-1	known	missense	c.1243	p.V415M	0.000	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC3	HGNC	ENSG00000148082				152	0	0	59	39	39.7959
DDX3X	0	genome.wustl.edu	37	X	41204467	41204467	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	X	41204467	41204467	G	T	SNP	DDX3X	ENST00000399959	human	ensembl	74_37	+1	known	missense	c.1060	p.D354Y	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301				76	0	0	34	45	56.962
HUWE1	0	genome.wustl.edu	37	X	53672407	53672407	+	Silent	SNP	T	T	C			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	X	53672407	53672407	T	C	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	silent	c.360	p.T120	0.996	pfam_E3_Ub_ligase_DUF908,superfamily_ARM-type_fold	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				22	0	0	13	19	59.375
EDA2R	0	genome.wustl.edu	37	X	65835851	65835851	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	X	65835851	65835851	T	G	SNP	EDA2R	ENST00000253392	human	ensembl	74_37	-1	known	missense	c.12	p.Q4H	1.000	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_27	-	no_errors	EDA2R	HGNC	ENSG00000131080				14	0	0	16	3	15.7895
KIAA2022	0	genome.wustl.edu	37	X	73961095	73961095	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	X	73961095	73961095	T	A	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.3297	p.Q1099H	0.993	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				56	0	0	72	10	12.1951
FAM186B	0	genome.wustl.edu	37	12	49999123	49999123	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	12	49999123	49999123	C	-	DEL	FAM186B	ENST00000533372	human	ensembl	74_37	-1	known	frame_shift_del	c.138	p.M47fs	0.300	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436				12	0	0	7	4	36.3636
FAXDC2	0	genome.wustl.edu	37	5	154202055	154202056	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	5	154202055	154202056	AG	-	DEL	FAXDC2	ENST00000326080	human	ensembl	74_37	-1	known	frame_shift_del	c.655_654	p.Y219fs	1.000:0.999	pfam_Fatty_acid_hydroxylase	pfam_Fatty_acid_hydroxylase	-	no_errors	FAXDC2	HGNC	ENSG00000170271				221	0	0	160	10	5.88235
FAM115C	0	genome.wustl.edu	37	7	143417404	143417405	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8484-01A-11D-2394-08	TCGA-BR-8484-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6f00fcf3-f10e-4c22-b4ea-d9cc765d2647	fb53f86c-6077-4496-a222-35622ccdedf8	7	143417404	143417405	CT	-	DEL	FAM115C	ENST00000441159	human	ensembl	74_37	+1	known	frame_shift_del	c.1252_1253	p.Q420fs	0.084:0.101	NULL	NULL	-	no_errors	FAM115C	HGNC	ENSG00000170379				109	0	0	93	5	5.10204
