Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
RPTN	0	genome.wustl.edu	37	1	152127241	152127241	+	Silent	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	152127241	152127241	G	A	SNP	RPTN	ENST00000316073	human	ensembl	74_37	-1	known	silent	c.2334	p.D778	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	RPTN	HGNC	ENSG00000215853				552	0	0	453	136	23.09
LCE1C	0	genome.wustl.edu	37	1	152777850	152777850	+	Silent	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	152777850	152777850	A	C	SNP	LCE1C	ENST00000368768	human	ensembl	74_37	-1	known	silent	c.105	p.P35	0.930	NULL	NULL	-	no_errors	LCE1C	HGNC	ENSG00000197084				118	0	0	97	57	37.013
OR10T2	0	genome.wustl.edu	37	1	158368403	158368403	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	158368403	158368403	A	C	SNP	OR10T2	ENST00000334438	human	ensembl	74_37	-1	known	missense	c.854	p.L285R	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10T2	HGNC	ENSG00000186306				48	0	0	34	7	17.0732
OR6Y1	0	genome.wustl.edu	37	1	158517216	158517216	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	158517216	158517216	A	C	SNP	OR6Y1	ENST00000302617	human	ensembl	74_37	-1	known	missense	c.680	p.L227R	0.669	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6Y1	HGNC	ENSG00000197532				112	0	0	64	30	31.9149
SPTA1	0	genome.wustl.edu	37	1	158590195	158590195	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	158590195	158590195	T	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.6182	p.K2061T	0.999	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				56	0	0	36	27	42.8571
CADM3	0	genome.wustl.edu	37	1	159163747	159163747	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	159163747	159163747	A	G	SNP	CADM3	ENST00000368124	human	ensembl	74_37	+1	known	missense	c.710	p.D237G	0.999	pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM3	HGNC	ENSG00000162706				72	0	0	49	30	37.9747
CEP350	0	genome.wustl.edu	37	1	179965870	179965870	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	179965870	179965870	T	G	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	missense	c.578	p.V193G	0.915	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837				23	0	0	13	10	43.4783
CEP350	0	genome.wustl.edu	37	1	179972336	179972336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	179972336	179972336	G	A	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	missense	c.1046	p.R349Q	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837				29	0	0	25	6	19.3548
HMCN1	0	genome.wustl.edu	37	1	186106025	186106025	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	186106025	186106025	A	C	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.13538	p.N4513T	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				164	0	0	90	44	32.8358
KCNT2	0	genome.wustl.edu	37	1	196459020	196459020	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	196459020	196459020	A	C	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	missense	c.223	p.L75V	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				78	0	0	55	20	26.6667
CFHR5	0	genome.wustl.edu	37	1	196967334	196967334	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	196967334	196967334	T	C	SNP	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	silent	c.1119	p.F373	0.006	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389				22	0	0	10	9	47.3684
CFHR5	0	genome.wustl.edu	37	1	196967340	196967340	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	196967340	196967340	T	G	SNP	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	missense	c.1125	p.H375Q	0.015	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389				28	0	0	12	10	45.4545
CRB1	0	genome.wustl.edu	37	1	197390679	197390679	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	197390679	197390679	T	G	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	missense	c.1721	p.F574C	0.985	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				141	0	0	81	44	35.2
USH2A	0	genome.wustl.edu	37	1	216258109	216258109	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	216258109	216258109	T	G	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.5098	p.I1700L	0.089	superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				113	0	0	74	36	32.7273
RAB3GAP2	0	genome.wustl.edu	37	1	220440002	220440002	+	RNA	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	220440002	220440002	T	C	SNP	RAB3GAP2	ENST00000462353	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				42	0	0	24	9	27.2727
PCNXL2	0	genome.wustl.edu	37	1	233134183	233134183	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	233134183	233134183	T	A	SNP	PCNXL2	ENST00000258229	human	ensembl	74_37	-1	known	missense	c.5605	p.M1869L	0.168	NULL	pfam_Pecanex,superfamily_Trypsin-like_Pept_dom	-	no_errors	PCNXL2	HGNC	ENSG00000135749				54	0	0	57	27	32.1429
LYST	0	genome.wustl.edu	37	1	235904748	235904748	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	235904748	235904748	G	A	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	nonsense	c.8332	p.R2778*	0.753	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				119	0	0	71	35	33.0189
MTR	0	genome.wustl.edu	37	1	237049613	237049613	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	237049613	237049613	A	C	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	missense	c.2797	p.S933R	0.996	superfamily_VitB12-dep_Met_synth_activ_dom,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				33	0	0	24	11	31.4286
FMN2	0	genome.wustl.edu	37	1	240374532	240374532	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	240374532	240374532	A	C	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.4062	p.K1354N	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				74	0	0	39	16	29.0909
CEP170	0	genome.wustl.edu	37	1	243319561	243319561	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	243319561	243319561	G	T	SNP	CEP170	ENST00000366542	human	ensembl	74_37	-1	known	nonsense	c.3873	p.Y1291*	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702				17	0	0	9	6	40
OR2L2	0	genome.wustl.edu	37	1	248202142	248202142	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	248202142	248202142	T	C	SNP	OR2L2	ENST00000366479	human	ensembl	74_37	+1	known	silent	c.573	p.T191	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L2	HGNC	ENSG00000203663				270	0	0	171	74	30.2041
OR2T5	0	genome.wustl.edu	37	1	248651944	248651944	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	248651944	248651944	A	C	SNP	OR2T5	ENST00000366473	human	ensembl	74_37	+1	known	missense	c.55	p.M19L	0.010	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T5	HGNC	ENSG00000203661				85	0	0	67	15	18.2927
RNF19B	0	genome.wustl.edu	37	1	33407927	33407927	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	33407927	33407927	C	T	SNP	RNF19B	ENST00000373456	human	ensembl	74_37	-1	known	silent	c.1539	p.T513	0.827	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19B	HGNC	ENSG00000116514				97	0	0	86	21	19.6262
GJB3	0	genome.wustl.edu	37	1	35250846	35250846	+	Silent	SNP	G	G	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	35250846	35250846	G	T	SNP	GJB3	ENST00000373362	human	ensembl	74_37	+1	known	silent	c.483	p.L161	1.000	pfam_Connexin_CCC,prints_Connexin31	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin31	-	no_errors	GJB3	HGNC	ENSG00000188910				132	0	0	162	9	5.26316
ENSG00000230615	0	genome.wustl.edu	37	1	44569083	44569083	+	RNA	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	44569083	44569083	G	A	SNP	ENSG00000230615	ENST00000434244	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	RP5-1198O20.4	Clone_based_vega_gene	ENSG00000230615				30	0	0	7	7	50
NEGR1	0	genome.wustl.edu	37	1	72076711	72076711	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	72076711	72076711	C	T	SNP	NEGR1	ENST00000357731	human	ensembl	74_37	-1	known	silent	c.786	p.K262	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NEGR1	HGNC	ENSG00000172260				105	0	0	68	17	20
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74954890	74954890	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	74954890	74954890	T	G	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	silent	c.2481	p.S827	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				62	0	0	37	14	27.451
C1orf173	0	genome.wustl.edu	37	1	75037845	75037845	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	75037845	75037845	A	C	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.3549	p.S1183R	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				270	0	0	160	54	25.2336
C1orf173	0	genome.wustl.edu	37	1	75097545	75097545	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	75097545	75097545	A	C	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.671	p.L224R	0.655	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				92	0	0	36	22	37.931
CAMTA1	0	genome.wustl.edu	37	1	7724054	7724054	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	7724054	7724054	T	G	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.1447	p.F483V	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				149	0	0	106	47	30.719
IFI44L	0	genome.wustl.edu	37	1	79101176	79101176	+	Splice_Site	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	79101176	79101176	T	C	SNP	IFI44L	ENST00000370751	human	ensembl	74_37	+1	known	splice_site	c.876+2	e4+2	1.000	-	-	-	no_errors	IFI44L	HGNC	ENSG00000137959				92	0	0	54	5	8.47458
IFI44L	0	genome.wustl.edu	37	1	79102722	79102722	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	79102722	79102722	T	A	SNP	IFI44L	ENST00000370751	human	ensembl	74_37	+1	known	missense	c.882	p.N294K	0.669	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	IFI44L	HGNC	ENSG00000137959				123	0	0	72	21	22.5806
LPHN2	0	genome.wustl.edu	37	1	82447530	82447530	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	82447530	82447530	T	A	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.3185	p.L1062H	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				259	0	0	135	63	31.8182
TTLL7	0	genome.wustl.edu	37	1	84412920	84412920	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	84412920	84412920	A	G	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	silent	c.393	p.T131	0.664	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				44	0	0	21	11	34.375
RBMXL1	0	genome.wustl.edu	37	1	89449506	89449506	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	1	89449506	89449506	C	G	SNP	RBMXL1	ENST00000321792	human	ensembl	74_37	-1	known	missense	c.4	p.V2L	1.000	NULL	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL1	HGNC	ENSG00000213516				177	0	0	110	22	16.6667
SEPHS1	0	genome.wustl.edu	37	10	13370452	13370452	+	Splice_Site	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	13370452	13370452	T	A	SNP	SEPHS1	ENST00000327347	human	ensembl	74_37	-1	known	splice_site	c.652-2	e6-2	1.000	-	-	-	no_errors	SEPHS1	HGNC	ENSG00000086475				83	0	0	111	7	5.9322
CYP2E1	0	genome.wustl.edu	37	10	135340998	135340998	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	135340998	135340998	C	T	SNP	CYP2E1	ENST00000252945	human	ensembl	74_37	+1	known	silent	c.99	p.P33	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2E-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2E1	HGNC	ENSG00000130649				91	0	0	98	10	9.25926
CUBN	0	genome.wustl.edu	37	10	16970291	16970291	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	16970291	16970291	A	C	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.6136	p.L2046V	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				75	0	0	59	13	18.0556
101928757	0	genome.wustl.edu	37	10	17922668	17922668	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	17922668	17922668	T	G	SNP	101928757	ENST00000331429	human	ensembl	74_37	+1	novel	missense	c.2851	p.F951V	0.000	superfamily_C-type_lectin_fold,smart_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1L1	Clone_based_vega_gene	ENSG00000183748				41	0	0	31	4	11.4286
ARL5B	0	genome.wustl.edu	37	10	18957582	18957582	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	18957582	18957582	G	C	SNP	ARL5B	ENST00000377275	human	ensembl	74_37	+1	known	missense	c.231	p.W77C	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL5B	HGNC	ENSG00000165997				60	0	0	51	12	19.0476
ENSG00000241125	0	genome.wustl.edu	37	10	38466930	38466930	+	RNA	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	38466930	38466930	A	C	SNP	ENSG00000241125	ENST00000419779	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-508N22.9	Clone_based_vega_gene	ENSG00000241125				17	0	0	8	4	33.3333
ENSG00000224761	0	genome.wustl.edu	37	10	38484550	38484550	+	RNA	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	38484550	38484550	T	C	SNP	ENSG00000224761	ENST00000423162	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-508N22.8	Clone_based_vega_gene	ENSG00000224761				38	0	0	35	8	18.6047
ENSG00000234864	0	genome.wustl.edu	37	10	43197389	43197389	+	RNA	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	43197389	43197389	A	C	SNP	ENSG00000234864	ENST00000439913	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.023	-	-	-	no_errors	AL022344.5	Clone_based_vega_gene	ENSG00000234864				35	0	0	23	6	20.6897
CSTF2T	0	genome.wustl.edu	37	10	53458078	53458078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	53458078	53458078	C	T	SNP	CSTF2T	ENST00000331173	human	ensembl	74_37	-1	known	missense	c.1232	p.G411D	0.575	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613				192	0	0	133	7	5
DKK1	0	genome.wustl.edu	37	10	54074399	54074399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	54074399	54074399	C	T	SNP	DKK1	ENST00000373970	human	ensembl	74_37	+1	known	missense	c.205	p.P69S	0.788	NULL	pfam_Dickkopf_N	-	no_errors	DKK1	HGNC	ENSG00000107984				92	0	0	117	7	5.64516
FAM13C	0	genome.wustl.edu	37	10	61011428	61011428	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	61011428	61011428	A	C	SNP	FAM13C	ENST00000373868	human	ensembl	74_37	-1	known	missense	c.1541	p.L514R	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541				79	0	0	67	18	21.1765
PRKCQ	0	genome.wustl.edu	37	10	6520990	6520990	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	6520990	6520990	C	T	SNP	PRKCQ	ENST00000263125	human	ensembl	74_37	-1	known	silent	c.1317	p.P439	0.133	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675				82	0	0	49	39	44.3182
CCSER2	0	genome.wustl.edu	37	10	86131567	86131567	+	Silent	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	86131567	86131567	T	A	SNP	CCSER2	ENST00000372088	human	ensembl	74_37	+1	known	silent	c.759	p.P253	1.000	NULL	NULL	-	no_errors	CCSER2	HGNC	ENSG00000107771				91	0	0	39	14	26.4151
LIPF	0	genome.wustl.edu	37	10	90435384	90435384	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	10	90435384	90435384	T	G	SNP	LIPF	ENST00000394375	human	ensembl	74_37	+1	known	silent	c.888	p.T296	0.974	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPF	HGNC	ENSG00000182333				42	0	0	17	4	19.0476
TRPC6	0	genome.wustl.edu	37	11	101454101	101454101	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	101454101	101454101	T	C	SNP	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	missense	c.134	p.Q45R	0.539	NULL	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672				16	0	0	19	4	17.3913
CARD18	0	genome.wustl.edu	37	11	105009613	105009613	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	105009613	105009613	T	C	SNP	CARD18	ENST00000530950	human	ensembl	74_37	-1	known	missense	c.200	p.K67R	0.000	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD18	HGNC	ENSG00000255501				195	0	0	97	38	28.1481
ELMOD1	0	genome.wustl.edu	37	11	107518220	107518220	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	107518220	107518220	T	G	SNP	ELMOD1	ENST00000265840	human	ensembl	74_37	+1	known	silent	c.447	p.T149	0.888	pfam_Engulfment_cell_motility_ELMO	pfam_Engulfment_cell_motility_ELMO	-	no_errors	ELMOD1	HGNC	ENSG00000110675				46	0	0	36	4	10
BCO2	0	genome.wustl.edu	37	11	112050053	112050053	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	112050053	112050053	G	C	SNP	BCO2	ENST00000357685	human	ensembl	74_37	+1	known	missense	c.141	p.Q47H	0.000	NULL	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580				103	0	0	129	7	5.14706
DRD2	0	genome.wustl.edu	37	11	113295322	113295322	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	113295322	113295322	A	G	SNP	DRD2	ENST00000355319	human	ensembl	74_37	-1	known	missense	c.52	p.W18R	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D2_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD2	HGNC	ENSG00000149295				106	0	0	77	25	24.5098
KMT2A	0	genome.wustl.edu	37	11	118392870	118392870	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	118392870	118392870	C	T	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.11893	p.R3965W	1.000	smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_Post-SET_dom	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				66	0	0	63	4	5.97015
TECTA	0	genome.wustl.edu	37	11	121008322	121008322	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	121008322	121008322	T	G	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.3134	p.L1045R	0.989	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				58	0	0	78	11	12.3596
OR6X1	0	genome.wustl.edu	37	11	123624329	123624329	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	123624329	123624329	T	G	SNP	OR6X1	ENST00000327930	human	ensembl	74_37	-1	known	silent	c.898	p.R300	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6X1	HGNC	ENSG00000221931				128	0	0	108	18	14.2857
OR10G4	0	genome.wustl.edu	37	11	123886648	123886648	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	123886648	123886648	T	G	SNP	OR10G4	ENST00000320891	human	ensembl	74_37	+1	known	missense	c.367	p.L123V	0.994	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737				189	0	0	218	25	10.2881
OR10G8	0	genome.wustl.edu	37	11	123900631	123900631	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	123900631	123900631	A	C	SNP	OR10G8	ENST00000431524	human	ensembl	74_37	+1	known	missense	c.302	p.Y101S	0.992	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G8	HGNC	ENSG00000234560				142	0	0	146	40	21.5054
VWA5A	0	genome.wustl.edu	37	11	124007748	124007748	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	124007748	124007748	A	G	SNP	VWA5A	ENST00000392748	human	ensembl	74_37	+1	known	missense	c.1652	p.K551R	1.000	NULL	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA5A	HGNC	ENSG00000110002				95	0	0	83	19	18.6275
KCNC1	0	genome.wustl.edu	37	11	17793502	17793502	+	Silent	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	17793502	17793502	G	A	SNP	KCNC1	ENST00000265969	human	ensembl	74_37	+1	known	silent	c.861	p.L287	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159				139	0	0	148	11	6.91824
NELL1	0	genome.wustl.edu	37	11	20907078	20907078	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	20907078	20907078	T	C	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	silent	c.595	p.L199	0.990	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973				44	0	0	26	10	27.7778
KCNQ1	0	genome.wustl.edu	37	11	2549242	2549242	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	2549242	2549242	C	T	SNP	KCNQ1	ENST00000155840	human	ensembl	74_37	+1	known	silent	c.471	p.F157	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCQN1,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ1	HGNC	ENSG00000053918				104	0	0	72	19	20.8791
ANO3	0	genome.wustl.edu	37	11	26663444	26663444	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	26663444	26663444	T	C	SNP	ANO3	ENST00000256737	human	ensembl	74_37	+1	known	silent	c.2143	p.L715	0.988	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343				90	0	0	55	31	36.0465
KCNA4	0	genome.wustl.edu	37	11	30033274	30033274	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	30033274	30033274	A	T	SNP	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	missense	c.952	p.L318I	1.000	prints_K_chnl	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				148	0	0	61	30	32.967
DCDC1	0	genome.wustl.edu	37	11	30973999	30973999	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	30973999	30973999	A	C	SNP	DCDC1	ENST00000597505	human	ensembl	74_37	-1	putative	missense	c.2708	p.L903R	0.233	NULL	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Doublecortin_dom,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959				36	0	0	19	6	24
IMMP1L	0	genome.wustl.edu	37	11	31454111	31454111	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	31454111	31454111	C	A	SNP	IMMP1L	ENST00000278200	human	ensembl	74_37	-1	known	missense	c.437	p.W146L	1.000	superfamily_Peptidase_S24_S26A/B/C	pfam_Peptidase_S24_S26,superfamily_Peptidase_S24_S26A/B/C,prints_Pept_S26A_signal_pept_1,tigrfam_Pept_S26A_signal_pept_1	-	no_errors	IMMP1L	HGNC	ENSG00000148950				50	0	0	44	8	15.3846
OR4S1	0	genome.wustl.edu	37	11	48327862	48327862	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	48327862	48327862	T	G	SNP	OR4S1	ENST00000319988	human	ensembl	74_37	+1	known	missense	c.88	p.F30V	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555				196	0	0	191	35	15.4867
OR51F2	0	genome.wustl.edu	37	11	4843208	4843208	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	4843208	4843208	T	C	SNP	OR51F2	ENST00000322110	human	ensembl	74_37	+1	known	missense	c.593	p.L198P	0.264	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51F2	HGNC	ENSG00000176925				163	0	0	103	26	20.155
LOC440040	0	genome.wustl.edu	37	11	49597963	49597963	+	RNA	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	49597963	49597963	A	C	SNP	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035				49	0	0	44	8	15.3846
OR4C13	0	genome.wustl.edu	37	11	49974429	49974429	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	49974429	49974429	T	G	SNP	OR4C13	ENST00000555099	human	ensembl	74_37	+1	known	missense	c.455	p.L152R	0.005	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C13	HGNC	ENSG00000258817				138	0	0	82	34	29.3103
OR4A5	0	genome.wustl.edu	37	11	51411522	51411522	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	51411522	51411522	T	C	SNP	OR4A5	ENST00000319760	human	ensembl	74_37	-1	known	missense	c.874	p.R292G	0.403	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840				27	0	0	24	5	17.2414
OR5D14	0	genome.wustl.edu	37	11	55563320	55563320	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	55563320	55563320	T	G	SNP	OR5D14	ENST00000335605	human	ensembl	74_37	+1	known	missense	c.289	p.F97V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113				60	0	0	58	6	9.375
TRIM51	0	genome.wustl.edu	37	11	55653074	55653074	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	55653074	55653074	A	C	SNP	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	missense	c.170	p.K57T	0.027	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				48	0	0	36	9	20
TRIM51	0	genome.wustl.edu	37	11	55659067	55659067	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	55659067	55659067	T	C	SNP	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	missense	c.1318	p.S440P	0.328	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				222	0	0	108	47	30.3226
OR8J3	0	genome.wustl.edu	37	11	55905014	55905014	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	55905014	55905014	A	G	SNP	OR8J3	ENST00000301529	human	ensembl	74_37	-1	known	missense	c.181	p.F61L	0.590	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J3	HGNC	ENSG00000167822				156	0	0	140	26	15.6627
OR5J2	0	genome.wustl.edu	37	11	55944631	55944631	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	55944631	55944631	G	T	SNP	OR5J2	ENST00000312298	human	ensembl	74_37	+1	known	missense	c.538	p.D180Y	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957				121	0	0	94	14	12.963
OR5T3	0	genome.wustl.edu	37	11	56020319	56020319	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	56020319	56020319	T	A	SNP	OR5T3	ENST00000303059	human	ensembl	74_37	+1	known	missense	c.644	p.L215H	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T3	HGNC	ENSG00000172489				284	0	0	187	36	16.1435
OR8K1	0	genome.wustl.edu	37	11	56113842	56113842	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	56113842	56113842	T	G	SNP	OR8K1	ENST00000279783	human	ensembl	74_37	+1	known	missense	c.328	p.F110V	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261				214	0	0	125	46	26.9006
OR5M11	0	genome.wustl.edu	37	11	56309940	56309940	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	56309940	56309940	T	A	SNP	OR5M11	ENST00000528616	human	ensembl	74_37	-1	known	missense	c.794	p.K265M	0.686	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M11	HGNC	ENSG00000255223				79	0	0	61	19	23.75
OR52N1	0	genome.wustl.edu	37	11	5809914	5809914	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	5809914	5809914	A	C	SNP	OR52N1	ENST00000317078	human	ensembl	74_37	-1	known	missense	c.133	p.F45V	0.442	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR52N1	HGNC	ENSG00000181001				61	0	0	39	18	31.5789
MPEG1	0	genome.wustl.edu	37	11	58979085	58979085	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	58979085	58979085	C	T	SNP	MPEG1	ENST00000361050	human	ensembl	74_37	-1	known	silent	c.1254	p.P418	0.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629				105	0	0	53	11	17.1875
GIF	0	genome.wustl.edu	37	11	59599167	59599167	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	59599167	59599167	T	C	SNP	GIF	ENST00000257248	human	ensembl	74_37	-1	known	silent	c.1176	p.V392	0.106	NULL	pfam_Cbl-bd_transpt_euk	-	no_errors	GIF	HGNC	ENSG00000134812				96	0	0	63	4	5.97015
GIF	0	genome.wustl.edu	37	11	59609977	59609977	+	Silent	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	59609977	59609977	G	A	SNP	GIF	ENST00000257248	human	ensembl	74_37	-1	known	silent	c.450	p.T150	0.372	pfam_Cbl-bd_transpt_euk	pfam_Cbl-bd_transpt_euk	-	no_errors	GIF	HGNC	ENSG00000134812				122	0	0	88	27	23.4783
OVOL1	0	genome.wustl.edu	37	11	65562559	65562559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	65562559	65562559	C	T	SNP	OVOL1	ENST00000335987	human	ensembl	74_37	+1	known	missense	c.551	p.T184M	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OVOL1	HGNC	ENSG00000172818				51	0	0	64	9	12.3288
OR10A4	0	genome.wustl.edu	37	11	6898758	6898758	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	6898758	6898758	A	T	SNP	OR10A4	ENST00000379829	human	ensembl	74_37	+1	known	missense	c.880	p.R294W	1.000	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A4	HGNC	ENSG00000170782				68	0	0	37	62	62.6263
NLRP14	0	genome.wustl.edu	37	11	7064294	7064294	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	7064294	7064294	A	C	SNP	NLRP14	ENST00000299481	human	ensembl	74_37	+1	known	missense	c.1037	p.K346T	0.011	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077				136	0	0	94	36	27.6923
PIDD	0	genome.wustl.edu	37	11	803460	803460	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	803460	803460	C	T	SNP	PIDD	ENST00000347755	human	ensembl	74_37	-1	known	silent	c.423	p.P141	0.001	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Peptidase_S68_pidd,pfam_Death_domain,pfam_Leu-rich_rpt,pfam_ZU5,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	PIDD	HGNC	ENSG00000177595				69	0	0	83	18	17.8218
DLG2	0	genome.wustl.edu	37	11	84996396	84996396	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	84996396	84996396	A	G	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	silent	c.54	p.F18	1.000	pfam_L27_1,pfscan_L27	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				53	0	0	38	11	22.449
GRM5	0	genome.wustl.edu	37	11	88258487	88258487	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	88258487	88258487	T	G	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.2716	p.T906P	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				337	0	0	243	63	20.5882
TYR	0	genome.wustl.edu	37	11	88911404	88911404	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	88911404	88911404	T	C	SNP	TYR	ENST00000263321	human	ensembl	74_37	+1	known	missense	c.283	p.F95L	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498				61	0	0	46	11	19.2982
KDM4D	0	genome.wustl.edu	37	11	94732108	94732108	+	Nonstop_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	11	94732108	94732108	A	C	SNP	KDM4D	ENST00000335080	human	ensembl	74_37	+1	known	nonstop	c.1572	p.*524Y	0.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,smart_TF_JmjN,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4D	HGNC	ENSG00000186280				34	0	0	32	9	21.9512
CLEC2B	0	genome.wustl.edu	37	12	10005931	10005931	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	10005931	10005931	T	G	SNP	CLEC2B	ENST00000228438	human	ensembl	74_37	-1	known	silent	c.418	p.R140	0.965	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC2B	HGNC	ENSG00000110852				46	0	0	42	8	16
ENSG00000180574	0	genome.wustl.edu	37	12	10659700	10659700	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	10659700	10659700	A	G	SNP	ENSG00000180574	ENST00000538173	human	ensembl	74_37	+1	known	missense	c.1199	p.K400R	1.000	pfam_TIF2_gsu_C,superfamily_Transl_elong_EF1A/Init_IF2_C	pfam_EF_GTP-bd_dom,pfam_TIF2_gsu_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_EF_GTP-bd_dom	-	no_errors	EIF2S3L	Uniprot_gn	ENSG00000180574				173	0	0	139	27	16.2651
RFX4	0	genome.wustl.edu	37	12	107141233	107141233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	107141233	107141233	C	T	SNP	RFX4	ENST00000357881	human	ensembl	74_37	+1	known	missense	c.1679	p.T560M	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783				80	0	0	80	6	6.97674
PRKAB1	0	genome.wustl.edu	37	12	120106129	120106129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	120106129	120106129	G	A	SNP	PRKAB1	ENST00000229328	human	ensembl	74_37	+1	known	missense	c.80	p.G27D	1.000	NULL	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB1	HGNC	ENSG00000111725				24	0	0	36	10	21.7391
TMEM132B	0	genome.wustl.edu	37	12	126138479	126138479	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	126138479	126138479	C	T	SNP	TMEM132B	ENST00000299308	human	ensembl	74_37	+1	known	silent	c.2460	p.R820	0.000	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364				75	0	0	48	11	18.6441
TMEM132B	0	genome.wustl.edu	37	12	126139242	126139242	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	126139242	126139242	C	G	SNP	TMEM132B	ENST00000299308	human	ensembl	74_37	+1	known	missense	c.3223	p.Q1075E	1.000	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364				90	0	0	66	4	5.71429
MMP17	0	genome.wustl.edu	37	12	132325352	132325352	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	132325352	132325352	C	T	SNP	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	silent	c.657	p.A219	0.006	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598				50	0	0	62	12	16.2162
KCNJ8	0	genome.wustl.edu	37	12	21919240	21919240	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	21919240	21919240	T	G	SNP	KCNJ8	ENST00000240662	human	ensembl	74_37	-1	known	missense	c.692	p.K231T	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir6.1	-	no_errors	KCNJ8	HGNC	ENSG00000121361				141	0	0	81	22	21.3592
ABCC9	0	genome.wustl.edu	37	12	22025656	22025656	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	22025656	22025656	T	G	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.2101	p.T701P	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				176	0	0	125	28	18.3007
OVCH1	0	genome.wustl.edu	37	12	29608191	29608191	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	29608191	29608191	T	C	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	missense	c.2428	p.K810E	0.882	superfamily_Trypsin-like_Pept_dom,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				89	0	0	61	21	25.6098
LRRK2	0	genome.wustl.edu	37	12	40668743	40668743	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	40668743	40668743	T	G	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.1889	p.I630S	0.959	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				51	0	0	29	6	17.1429
LRRK2	0	genome.wustl.edu	37	12	40740625	40740625	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	40740625	40740625	T	G	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	silent	c.6180	p.G2060	0.421	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				41	0	0	18	5	21.7391
ADAMTS20	0	genome.wustl.edu	37	12	43860519	43860519	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	43860519	43860519	T	G	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.1303	p.S435R	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				59	0	0	35	6	14.6341
OR6C3	0	genome.wustl.edu	37	12	55725759	55725759	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	55725759	55725759	A	C	SNP	OR6C3	ENST00000379667	human	ensembl	74_37	+1	known	missense	c.275	p.N92T	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C3	HGNC	ENSG00000205329				128	0	0	86	18	17.3077
LRIG3	0	genome.wustl.edu	37	12	59307779	59307779	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	59307779	59307779	T	C	SNP	LRIG3	ENST00000320743	human	ensembl	74_37	-1	known	missense	c.367	p.I123V	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG3	HGNC	ENSG00000139263				51	0	0	46	8	14.8148
TRHDE	0	genome.wustl.edu	37	12	72969051	72969051	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	72969051	72969051	T	C	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	silent	c.2013	p.T671	0.290	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				28	0	0	32	7	17.9487
KCNC2	0	genome.wustl.edu	37	12	75444468	75444468	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	75444468	75444468	A	G	SNP	KCNC2	ENST00000549446	human	ensembl	74_37	-1	known	silent	c.1317	p.G439	0.005	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006				64	0	0	37	12	24.4898
E2F7	0	genome.wustl.edu	37	12	77438527	77438527	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	77438527	77438527	T	G	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	missense	c.878	p.K293T	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				103	0	0	64	19	22.8916
SYT1	0	genome.wustl.edu	37	12	79747354	79747354	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	79747354	79747354	C	A	SNP	SYT1	ENST00000261205	human	ensembl	74_37	+1	known	missense	c.883	p.L295M	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT1	HGNC	ENSG00000067715				247	0	0	168	29	14.7208
LIN7A	0	genome.wustl.edu	37	12	81283099	81283099	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	81283099	81283099	T	G	SNP	LIN7A	ENST00000552864	human	ensembl	74_37	-1	known	missense	c.132	p.E44D	0.998	pfam_L27_C,smart_L27,pirsf_Lin-7_homologue,pfscan_L27	pfam_PDZ,pfam_L27_C,superfamily_PDZ,smart_L27,smart_PDZ,pirsf_Lin-7_homologue,pfscan_L27,pfscan_PDZ	-	no_errors	LIN7A	HGNC	ENSG00000111052				35	0	0	24	4	14.2857
PPFIA2	0	genome.wustl.edu	37	12	81741391	81741391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	81741391	81741391	G	A	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.2153	p.P718L	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220				183	0	0	78	55	41.3534
LRRIQ1	0	genome.wustl.edu	37	12	85626509	85626509	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	85626509	85626509	T	G	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	missense	c.4991	p.L1664R	0.988	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				49	0	0	25	4	13.7931
MGAT4C	0	genome.wustl.edu	37	12	86383276	86383276	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	86383276	86383276	T	C	SNP	MGAT4C	ENST00000393205	human	ensembl	74_37	-1	known	missense	c.136	p.M46V	1.000	superfamily_LSM_dom	pfam_Glyco_transf_54,superfamily_LSM_dom	-	no_errors	MGAT4C	HGNC	ENSG00000182050				26	0	0	15	3	16.6667
CLLU1	0	genome.wustl.edu	37	12	92818588	92818588	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	92818588	92818588	A	G	SNP	CLLU1	ENST00000378485	human	ensembl	74_37	+1	known	missense	c.132	p.I44M	0.030	NULL	NULL	-	no_errors	CLLU1	HGNC	ENSG00000257127				28	0	0	20	7	25.9259
PZP	0	genome.wustl.edu	37	12	9303324	9303324	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	12	9303324	9303324	T	G	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	missense	c.4300	p.S1434R	0.019	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				63	0	0	36	15	29.4118
NALCN	0	genome.wustl.edu	37	13	101833582	101833582	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	101833582	101833582	A	G	SNP	NALCN	ENST00000376196	human	ensembl	74_37	-1	known	missense	c.1871	p.L624P	0.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				129	0	0	100	22	18.0328
SHISA2	0	genome.wustl.edu	37	13	26620785	26620785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	26620785	26620785	C	T	SNP	SHISA2	ENST00000319420	human	ensembl	74_37	-1	known	missense	c.754	p.V252M	0.992	NULL	NULL	-	no_errors	SHISA2	HGNC	ENSG00000180730				76	0	0	81	28	25.6881
CCDC169-SOHLH2	0	genome.wustl.edu	37	13	36776025	36776025	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	36776025	36776025	T	C	SNP	CCDC169-SOHLH2	ENST00000511166	human	ensembl	74_37	-1	known	missense	c.485	p.K162R	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	CCDC169-SOHLH2	HGNC	ENSG00000250709				80	0	0	42	17	28.8136
SERTM1	0	genome.wustl.edu	37	13	37269503	37269503	+	Silent	SNP	C	C	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	37269503	37269503	C	G	SNP	SERTM1	ENST00000315190	human	ensembl	74_37	+1	known	silent	c.288	p.S96	1.000	NULL	NULL	-	no_errors	SERTM1	HGNC	ENSG00000180440				84	0	0	58	23	28.3951
TRPC4	0	genome.wustl.edu	37	13	38211727	38211727	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	38211727	38211727	T	G	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	missense	c.2262	p.E754D	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107				55	0	0	41	10	19.6078
TRPC4	0	genome.wustl.edu	37	13	38229328	38229328	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	38229328	38229328	T	C	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	missense	c.1781	p.E594G	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107				39	0	0	26	13	33.3333
FREM2	0	genome.wustl.edu	37	13	39262883	39262883	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	39262883	39262883	T	C	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	silent	c.1402	p.L468	0.992	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				90	0	0	71	17	19.3182
WBP4	0	genome.wustl.edu	37	13	41639425	41639425	+	Splice_Site	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	41639425	41639425	T	C	SNP	WBP4	ENST00000379487	human	ensembl	74_37	+1	known	splice_site	c.262+2	e4+2	1.000	-	-	-	no_errors	WBP4	HGNC	ENSG00000120688				19	0	0	10	6	37.5
KLHL1	0	genome.wustl.edu	37	13	70314643	70314643	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	70314643	70314643	T	G	SNP	KLHL1	ENST00000377844	human	ensembl	74_37	-1	known	missense	c.1685	p.D562A	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC	ENSG00000150361				61	0	0	65	12	15.5844
TBC1D4	0	genome.wustl.edu	37	13	75936660	75936660	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	75936660	75936660	G	T	SNP	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	missense	c.582	p.D194E	0.869	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				242	0	0	251	16	5.99251
DZIP1	0	genome.wustl.edu	37	13	96237108	96237108	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	96237108	96237108	A	G	SNP	DZIP1	ENST00000347108	human	ensembl	74_37	-1	known	silent	c.2406	p.S802	0.003	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DZIP1	HGNC	ENSG00000134874				70	0	0	55	14	20.2899
STK24	0	genome.wustl.edu	37	13	99114041	99114041	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	13	99114041	99114041	A	C	SNP	STK24	ENST00000376547	human	ensembl	74_37	-1	known	missense	c.1076	p.L359W	0.113	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK24	HGNC	ENSG00000102572				158	0	0	134	40	22.9885
OR4N2	0	genome.wustl.edu	37	14	20295735	20295735	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	14	20295735	20295735	T	G	SNP	OR4N2	ENST00000315947	human	ensembl	74_37	+1	known	missense	c.128	p.F43C	0.992	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294				387	0	0	149	36	19.4595
MYH6	0	genome.wustl.edu	37	14	23869976	23869976	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	14	23869976	23869976	T	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.1352	p.K451M	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				98	0	0	54	30	35.7143
LRFN5	0	genome.wustl.edu	37	14	42356513	42356513	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	14	42356513	42356513	A	G	SNP	LRFN5	ENST00000298119	human	ensembl	74_37	+1	known	missense	c.685	p.S229G	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN5	HGNC	ENSG00000165379				159	0	0	82	19	18.8119
SLC8A3	0	genome.wustl.edu	37	14	70634007	70634007	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	14	70634007	70634007	T	G	SNP	SLC8A3	ENST00000381269	human	ensembl	74_37	-1	known	missense	c.1133	p.K378T	1.000	tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678				151	1	0.657895	84	30	26.3158
SERPINA10	0	genome.wustl.edu	37	14	94754773	94754773	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	14	94754773	94754773	T	G	SNP	SERPINA10	ENST00000261994	human	ensembl	74_37	-1	known	missense	c.842	p.K281T	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA10	HGNC	ENSG00000140093				73	0	0	54	6	10
SERPINA9	0	genome.wustl.edu	37	14	94933607	94933607	+	Silent	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	14	94933607	94933607	A	C	SNP	SERPINA9	ENST00000337425	human	ensembl	74_37	-1	known	silent	c.795	p.A265	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA9	HGNC	ENSG00000170054				53	0	0	33	9	21.4286
ENSG00000259425	0	genome.wustl.edu	37	15	23098432	23098432	+	RNA	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	15	23098432	23098432	G	A	SNP	ENSG00000259425	ENST00000559740	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	RP11-566K19.5	Clone_based_vega_gene	ENSG00000259425				16	0	0	17	5	22.7273
RYR3	0	genome.wustl.edu	37	15	33928718	33928718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	15	33928718	33928718	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.3523	p.E1175K	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				140	0	0	74	32	30.1887
GOLGA8A	0	genome.wustl.edu	37	15	34678911	34678911	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	15	34678911	34678911	C	G	SNP	GOLGA8A	ENST00000432566	human	ensembl	74_37	-1	known	missense	c.290	p.R97P	0.997	NULL	NULL	-	no_errors	GOLGA8A	HGNC	ENSG00000175265				22	0	0	17	4	19.0476
SLC12A1	0	genome.wustl.edu	37	15	48533782	48533782	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	15	48533782	48533782	T	C	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	missense	c.1286	p.V429A	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				177	0	0	96	41	29.927
SECISBP2L	0	genome.wustl.edu	37	15	49284561	49284561	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	15	49284561	49284561	C	T	SNP	SECISBP2L	ENST00000559471	human	ensembl	74_37	-1	known	silent	c.3186	p.G1062	0.000	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593				97	0	0	86	29	25.2174
UNC13C	0	genome.wustl.edu	37	15	54307854	54307854	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	15	54307854	54307854	A	G	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	silent	c.2754	p.Q918	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				85	0	0	42	22	34.375
UNC13C	0	genome.wustl.edu	37	15	54435824	54435824	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	15	54435824	54435824	T	C	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.3014	p.I1005T	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				23	0	0	13	4	23.5294
THSD4	0	genome.wustl.edu	37	15	72037465	72037465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	15	72037465	72037465	C	T	SNP	THSD4	ENST00000261862	human	ensembl	74_37	+1	known	missense	c.1927	p.R643C	0.484	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD4	HGNC	ENSG00000187720				442	1	0.225734	293	135	31.5421
AGBL1	0	genome.wustl.edu	37	15	86807985	86807985	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	15	86807985	86807985	A	G	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	missense	c.1445	p.K482R	0.145	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748				123	0	0	67	29	30.2083
SOX8	0	genome.wustl.edu	37	16	1034896	1034896	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	16	1034896	1034896	A	C	SNP	SOX8	ENST00000293894	human	ensembl	74_37	+1	known	missense	c.851	p.E284A	1.000	NULL	pfam_HMG_box_dom,pfam_Sox_N,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX8	HGNC	ENSG00000005513				35	0	0	47	9	16.0714
TMC5	0	genome.wustl.edu	37	16	19451929	19451929	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	16	19451929	19451929	A	G	SNP	TMC5	ENST00000396229	human	ensembl	74_37	+1	known	missense	c.569	p.H190R	0.004	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534				168	0	0	100	17	14.5299
TMC5	0	genome.wustl.edu	37	16	19451957	19451957	+	Silent	SNP	A	A	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	16	19451957	19451957	A	T	SNP	TMC5	ENST00000396229	human	ensembl	74_37	+1	known	silent	c.597	p.A199	0.000	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534				143	0	0	82	15	15.4639
DNAH3	0	genome.wustl.edu	37	16	20975134	20975134	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	16	20975134	20975134	A	G	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.10072	p.Y3358H	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				137	0	0	120	14	10.4478
ABCC12	0	genome.wustl.edu	37	16	48174824	48174824	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	16	48174824	48174824	A	C	SNP	ABCC12	ENST00000311303	human	ensembl	74_37	-1	known	missense	c.431	p.L144R	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC12	HGNC	ENSG00000140798				57	0	0	56	9	13.8462
CNTNAP4	0	genome.wustl.edu	37	16	76523743	76523743	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	16	76523743	76523743	T	G	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	silent	c.2040	p.T680	0.996	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				16	0	0	12	3	20
ADAMTS18	0	genome.wustl.edu	37	16	77397765	77397765	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	16	77397765	77397765	T	G	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.990	p.K330N	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				58	0	0	54	13	19.403
CDH13	0	genome.wustl.edu	37	16	83159046	83159046	+	Silent	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	16	83159046	83159046	G	A	SNP	CDH13	ENST00000566620	human	ensembl	74_37	+1	known	silent	c.423	p.V141	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945				26	0	0	27	3	10
SPIRE2	0	genome.wustl.edu	37	16	89922632	89922632	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	16	89922632	89922632	T	G	SNP	SPIRE2	ENST00000378247	human	ensembl	74_37	+1	known	missense	c.1090	p.W364G	0.705	NULL	superfamily_Znf_FYVE_PHD,smart_KIND	-	no_errors	SPIRE2	HGNC	ENSG00000204991				10	0	0	10	10	50
GRIN2A	0	genome.wustl.edu	37	16	9923493	9923493	+	Silent	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	16	9923493	9923493	A	C	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	silent	c.1794	p.S598	0.998	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				72	0	0	34	13	27.6596
MYH3	0	genome.wustl.edu	37	17	10542945	10542945	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	10542945	10542945	T	C	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.2857	p.K953E	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				324	0	0	211	91	30.1325
PMP22	0	genome.wustl.edu	37	17	15142792	15142792	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	15142792	15142792	A	C	SNP	PMP22	ENST00000494511	human	ensembl	74_37	-1	novel	missense	c.136	p.C46G	0.922	NULL	NULL	-	no_errors	PMP22	HGNC	ENSG00000109099				112	0	0	81	29	26.3636
SNORD3B-2	0	genome.wustl.edu	37	17	18967120	18967120	+	RNA	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	18967120	18967120	T	C	SNP	SNORD3B-2	ENST00000571722	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD3B-2	HGNC	ENSG00000262074				82	0	0	21	21	50
SNORD3B-2	0	genome.wustl.edu	37	17	18967152	18967152	+	RNA	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	18967152	18967152	C	T	SNP	SNORD3B-2	ENST00000571722	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD3B-2	HGNC	ENSG00000262074				186	0	0	90	11	10.8911
KCNJ12	0	genome.wustl.edu	37	17	21318958	21318958	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	21318958	21318958	T	G	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	missense	c.304	p.F102V	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185				92	0	0	81	7	7.95455
ENSG00000266999	0	genome.wustl.edu	37	17	34234052	34234052	+	RNA	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	34234052	34234052	T	C	SNP	ENSG00000266999	ENST00000587132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	AC015849.16	Clone_based_vega_gene	ENSG00000266999				56	0	0	26	13	33.3333
ENSG00000266999	0	genome.wustl.edu	37	17	34235609	34235609	+	RNA	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	34235609	34235609	T	G	SNP	ENSG00000266999	ENST00000587132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC015849.16	Clone_based_vega_gene	ENSG00000266999				97	0	0	64	4	5.88235
PTGES3L-AARSD1	0	genome.wustl.edu	37	17	41122335	41122335	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	41122335	41122335	T	A	SNP	PTGES3L-AARSD1	ENST00000409399	human	ensembl	74_37	-1	known	nonsense	c.532	p.R178*	0.077	pfam_Ala-tRNA-synth_IIc_N	pfam_tRNA_SAD,pfam_CS_dom,pfam_Ala-tRNA-synth_IIc_N,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_HSP20-like_chaperone,smart_tRNA_SAD,pfscan_CS_dom,pfscan_Ala-tRNA-synth_IIc_core	-	no_errors	PTGES3L-AARSD1	HGNC	ENSG00000108825				303	0	0	213	17	7.3913
SMTNL2	0	genome.wustl.edu	37	17	4497135	4497135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	4497135	4497135	C	T	SNP	SMTNL2	ENST00000389313	human	ensembl	74_37	+1	known	missense	c.749	p.T250M	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTNL2	HGNC	ENSG00000188176				78	0	0	57	17	22.973
IGF2BP1	0	genome.wustl.edu	37	17	47075088	47075088	+	RNA	SNP	C	C	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	47075088	47075088	C	A	SNP	IGF2BP1	ENST00000510023	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	IGF2BP1	HGNC	ENSG00000159217				70	0	0	63	20	24.0964
KIF2B	0	genome.wustl.edu	37	17	51902400	51902400	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	51902400	51902400	A	G	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.2006	p.K669R	0.313	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				58	0	0	29	5	14.7059
SMG8	0	genome.wustl.edu	37	17	57290673	57290673	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	57290673	57290673	C	T	SNP	SMG8	ENST00000300917	human	ensembl	74_37	+1	known	missense	c.2489	p.A830V	1.000	pfam_Smg8/Smg9	pfam_Smg8/Smg9	-	no_errors	SMG8	HGNC	ENSG00000167447				183	0	0	109	17	13.4921
CCDC42	0	genome.wustl.edu	37	17	8644934	8644934	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	8644934	8644934	A	G	SNP	CCDC42	ENST00000293845	human	ensembl	74_37	-1	known	missense	c.350	p.L117P	0.999	NULL	NULL	-	no_errors	CCDC42	HGNC	ENSG00000161973				93	0	0	69	33	32.3529
GLP2R	0	genome.wustl.edu	37	17	9739737	9739737	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	17	9739737	9739737	T	G	SNP	GLP2R	ENST00000262441	human	ensembl	74_37	+1	known	silent	c.327	p.S109	0.001	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GLP2R	HGNC	ENSG00000065325				194	0	0	112	44	28.2051
LAMA3	0	genome.wustl.edu	37	18	21526174	21526174	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	18	21526174	21526174	A	C	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.9277	p.S3093R	0.446	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				84	0	0	63	31	32.9787
SETBP1	0	genome.wustl.edu	37	18	42281639	42281639	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	18	42281639	42281639	A	G	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.328	p.T110A	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				113	0	0	64	30	31.9149
EPB41L3	0	genome.wustl.edu	37	18	5406839	5406839	+	Silent	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	18	5406839	5406839	G	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	silent	c.2286	p.S762	0.999	pirsf_Band_41_protein,pfam_SAB_dom	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				117	0	0	76	30	28.3019
L3MBTL4	0	genome.wustl.edu	37	18	5969416	5969416	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	18	5969416	5969416	T	C	SNP	L3MBTL4	ENST00000284898	human	ensembl	74_37	-1	known	silent	c.1617	p.Q539	0.022	superfamily_SAM/pointed	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655				97	0	0	100	33	24.812
SERPINB3	0	genome.wustl.edu	37	18	61322928	61322928	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	18	61322928	61322928	T	G	SNP	SERPINB3	ENST00000283752	human	ensembl	74_37	-1	known	missense	c.1136	p.N379T	0.037	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB3	HGNC	ENSG00000057149				194	0	0	124	44	26.1905
ARHGAP28	0	genome.wustl.edu	37	18	6870702	6870702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	18	6870702	6870702	G	A	SNP	ARHGAP28	ENST00000400091	human	ensembl	74_37	+1	known	missense	c.925	p.E309K	0.656	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756				72	0	0	51	27	34.6154
CBLN2	0	genome.wustl.edu	37	18	70205481	70205481	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	18	70205481	70205481	A	G	SNP	CBLN2	ENST00000269503	human	ensembl	74_37	-1	known	missense	c.605	p.L202P	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN2	HGNC	ENSG00000141668				121	0	0	82	31	27.4336
ZNF236	0	genome.wustl.edu	37	18	74616428	74616428	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	18	74616428	74616428	T	C	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.1981	p.Y661H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				36	0	0	30	3	9.09091
ZNF208	0	genome.wustl.edu	37	19	22156135	22156135	+	Silent	SNP	G	G	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	22156135	22156135	G	T	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	silent	c.1701	p.T567	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				27	0	0	11	5	31.25
ZNF99	0	genome.wustl.edu	37	19	22940372	22940372	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	22940372	22940372	T	G	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	missense	c.2066	p.K689T	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973				39	0	0	24	3	11.1111
ZNF728	0	genome.wustl.edu	37	19	23159521	23159521	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	23159521	23159521	A	G	SNP	ZNF728	ENST00000594710	human	ensembl	74_37	-1	novel	silent	c.618	p.H206	0.027	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF728	HGNC	ENSG00000269067				37	0	0	12	7	36.8421
UPK1A	0	genome.wustl.edu	37	19	36164136	36164136	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	36164136	36164136	C	A	SNP	UPK1A	ENST00000379013	human	ensembl	74_37	+1	known	nonsense	c.288	p.Y96*	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1A	HGNC	ENSG00000105668				111	0	0	143	48	25.1309
ZNF793	0	genome.wustl.edu	37	19	38023304	38023304	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	38023304	38023304	A	C	SNP	ZNF793	ENST00000445217	human	ensembl	74_37	+1	known	missense	c.62	p.E21A	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF793	HGNC	ENSG00000188227				48	0	0	52	6	10.3448
ZNF571	0	genome.wustl.edu	37	19	38057008	38057008	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	38057008	38057008	T	C	SNP	ZNF571	ENST00000328550	human	ensembl	74_37	-1	known	missense	c.322	p.M108V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF571	HGNC	ENSG00000180479				95	0	0	54	32	37.2093
BCAM	0	genome.wustl.edu	37	19	45322958	45322958	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	45322958	45322958	C	T	SNP	BCAM	ENST00000270233	human	ensembl	74_37	+1	known	missense	c.1738	p.R580C	1.000	NULL	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BCAM	HGNC	ENSG00000187244				28	0	0	48	5	9.43396
NR1H2	0	genome.wustl.edu	37	19	50881825	50881825	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	50881825	50881825	G	A	SNP	NR1H2	ENST00000593532	human	ensembl	74_37	+1	known	missense	c.392	p.S131N	1.000	NULL	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408				95	0	0	123	7	5.38462
ZNF665	0	genome.wustl.edu	37	19	53669150	53669150	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	53669150	53669150	C	A	SNP	ZNF665	ENST00000396424	human	ensembl	74_37	-1	known	missense	c.593	p.R198I	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497				109	0	0	57	29	33.7209
ZNF813	0	genome.wustl.edu	37	19	53993839	53993839	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	53993839	53993839	A	C	SNP	ZNF813	ENST00000396403	human	ensembl	74_37	+1	known	missense	c.353	p.K118T	0.033	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF813	HGNC	ENSG00000198346				262	0	0	185	19	9.31373
LILRA2	0	genome.wustl.edu	37	19	55098681	55098681	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	55098681	55098681	A	C	SNP	LILRA2	ENST00000251377	human	ensembl	74_37	+1	known	missense	c.1320	p.Q440H	0.001	pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA2	HGNC	ENSG00000239998				117	0	0	86	7	7.52688
NLRP13	0	genome.wustl.edu	37	19	56422095	56422095	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	56422095	56422095	T	A	SNP	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	missense	c.2116	p.S706C	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572				109	0	0	117	11	8.59375
ZNF264	0	genome.wustl.edu	37	19	57723986	57723986	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	57723986	57723986	A	G	SNP	ZNF264	ENST00000263095	human	ensembl	74_37	+1	known	silent	c.1521	p.G507	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF264	HGNC	ENSG00000083844				91	0	0	69	11	13.75
AURKC	0	genome.wustl.edu	37	19	57743421	57743421	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	57743421	57743421	A	G	SNP	AURKC	ENST00000302804	human	ensembl	74_37	+1	known	missense	c.125	p.D42G	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AURKC	HGNC	ENSG00000105146				66	0	0	45	12	21.0526
ZNF460	0	genome.wustl.edu	37	19	57802744	57802744	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	57802744	57802744	C	T	SNP	ZNF460	ENST00000360338	human	ensembl	74_37	+1	known	missense	c.835	p.P279S	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714				136	0	0	129	10	7.19424
ZNF211	0	genome.wustl.edu	37	19	58152347	58152347	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	58152347	58152347	A	C	SNP	ZNF211	ENST00000240731	human	ensembl	74_37	+1	known	missense	c.532	p.S178R	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF211	HGNC	ENSG00000121417				88	0	0	55	14	20.2899
ZNF606	0	genome.wustl.edu	37	19	58491404	58491404	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	58491404	58491404	A	G	SNP	ZNF606	ENST00000341164	human	ensembl	74_37	-1	known	missense	c.644	p.L215P	0.018	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704				136	0	0	120	26	17.8082
ZNF329	0	genome.wustl.edu	37	19	58640334	58640334	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	58640334	58640334	A	C	SNP	ZNF329	ENST00000358067	human	ensembl	74_37	-1	known	missense	c.537	p.N179K	0.003	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF329	HGNC	ENSG00000181894				80	0	0	51	8	13.5593
MUC16	0	genome.wustl.edu	37	19	9058642	9058642	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	9058642	9058642	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.28804	p.T9602A	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				44	0	0	29	8	21.6216
MUC16	0	genome.wustl.edu	37	19	9075479	9075479	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	9075479	9075479	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.11967	p.Q3989H	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				44	0	0	15	14	48.2759
MUC16	0	genome.wustl.edu	37	19	9075509	9075509	+	Silent	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	9075509	9075509	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.11937	p.S3979	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				40	0	0	25	3	10.7143
MUC16	0	genome.wustl.edu	37	19	9083248	9083248	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	19	9083248	9083248	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.8567	p.E2856G	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				29	0	0	11	5	31.25
SULT1C3	0	genome.wustl.edu	37	2	108872118	108872118	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	108872118	108872118	T	G	SNP	SULT1C3	ENST00000329106	human	ensembl	74_37	+1	known	missense	c.490	p.L164V	0.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1C3	HGNC	ENSG00000196228				88	0	0	61	16	20.7792
MYO7B	0	genome.wustl.edu	37	2	128366344	128366344	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	128366344	128366344	G	A	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	missense	c.2705	p.R902H	0.860	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994				31	0	0	28	11	28.2051
ZRANB3	0	genome.wustl.edu	37	2	136023244	136023244	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	136023244	136023244	C	G	SNP	ZRANB3	ENST00000264159	human	ensembl	74_37	-1	known	missense	c.1399	p.G467R	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988				20	0	0	26	5	16.129
LRP1B	0	genome.wustl.edu	37	2	141200150	141200150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	141200150	141200150	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.10337	p.T3446M	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				80	0	0	55	33	37.5
GTDC1	0	genome.wustl.edu	37	2	144764977	144764977	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	144764977	144764977	T	G	SNP	GTDC1	ENST00000344850	human	ensembl	74_37	-1	known	missense	c.647	p.K216T	0.010	NULL	pfam_GlycosylTrfase_1_N,pfam_Glyco_trans_1	-	no_errors	GTDC1	HGNC	ENSG00000121964				79	0	0	64	6	8.57143
KCNJ3	0	genome.wustl.edu	37	2	155555450	155555450	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	155555450	155555450	G	C	SNP	KCNJ3	ENST00000295101	human	ensembl	74_37	+1	known	missense	c.163	p.V55L	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ3	HGNC	ENSG00000162989				70	0	0	51	17	25
SLC4A10	0	genome.wustl.edu	37	2	162815046	162815046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	162815046	162815046	C	T	SNP	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	missense	c.2843	p.S948L	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290				28	0	0	22	5	18.5185
SCN9A	0	genome.wustl.edu	37	2	167141153	167141153	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	167141153	167141153	T	C	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.1787	p.Q596R	0.906	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				88	0	0	87	14	13.8614
TTN	0	genome.wustl.edu	37	2	179485466	179485466	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	179485466	179485466	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.38167	p.S12723R	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				150	0	0	112	24	17.6471
TTN	0	genome.wustl.edu	37	2	179603061	179603061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	179603061	179603061	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.10387	p.E3463K	0.871	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				35	0	0	21	19	47.5
TTN	0	genome.wustl.edu	37	2	179615852	179615852	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	179615852	179615852	T	A	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	missense	c.11275	p.S3759C	0.247	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				72	0	0	48	17	26.1538
ITGA4	0	genome.wustl.edu	37	2	182374426	182374426	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	182374426	182374426	T	C	SNP	ITGA4	ENST00000397033	human	ensembl	74_37	+1	known	silent	c.1737	p.A579	0.361	pfam_Integrin_alpha-2,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232				79	0	0	40	33	45.2055
ZSWIM2	0	genome.wustl.edu	37	2	187692958	187692958	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	187692958	187692958	T	G	SNP	ZSWIM2	ENST00000295131	human	ensembl	74_37	-1	known	missense	c.1655	p.N552T	0.000	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012				55	0	0	34	9	20.9302
ENSG00000231689	0	genome.wustl.edu	37	2	189093058	189093058	+	RNA	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	189093058	189093058	A	C	SNP	ENSG00000231689	ENST00000415357	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	AC068718.1	Clone_based_vega_gene	ENSG00000231689				29	0	0	25	7	21.875
ERBB4	0	genome.wustl.edu	37	2	212248779	212248779	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	212248779	212248779	A	G	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.3488	p.L1163P	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				73	0	0	70	13	15.6627
ABCA12	0	genome.wustl.edu	37	2	215855595	215855595	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	215855595	215855595	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.3455	p.S1152L	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				89	0	0	52	36	40.9091
SPHKAP	0	genome.wustl.edu	37	2	228884001	228884001	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	228884001	228884001	T	G	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.1569	p.Q523H	1.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				95	0	0	81	24	22.8571
SP140	0	genome.wustl.edu	37	2	231157373	231157373	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	231157373	231157373	A	C	SNP	SP140	ENST00000392045	human	ensembl	74_37	+1	known	missense	c.1838	p.K613T	0.013	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263				103	0	0	84	30	26.3158
FSHR	0	genome.wustl.edu	37	2	49191060	49191060	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	49191060	49191060	T	G	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.900	p.E300D	0.239	pfam_GnHR_TM,prints_FSH_rcpt	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				177	0	0	124	27	17.8808
NRXN1	0	genome.wustl.edu	37	2	50779932	50779932	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	50779932	50779932	A	C	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.1528	p.L510V	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				120	0	0	75	16	17.5824
AFTPH	0	genome.wustl.edu	37	2	64779733	64779733	+	Silent	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	64779733	64779733	T	A	SNP	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	silent	c.1125	p.T375	0.993	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				82	0	0	60	24	28.5714
MEIS1	0	genome.wustl.edu	37	2	66796234	66796234	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	2	66796234	66796234	C	T	SNP	MEIS1	ENST00000272369	human	ensembl	74_37	+1	known	silent	c.1167	p.Y389	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS1	HGNC	ENSG00000143995				180	0	0	126	47	27.1676
SPTLC3	0	genome.wustl.edu	37	20	13107335	13107335	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	20	13107335	13107335	T	G	SNP	SPTLC3	ENST00000399002	human	ensembl	74_37	+1	known	missense	c.1250	p.L417R	0.001	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SPTLC3	HGNC	ENSG00000172296				168	0	0	143	30	17.341
SEC23B	0	genome.wustl.edu	37	20	18505155	18505155	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	20	18505155	18505155	G	C	SNP	SEC23B	ENST00000262544	human	ensembl	74_37	+1	known	missense	c.445	p.E149Q	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23B	HGNC	ENSG00000101310				107	0	0	94	21	18.2609
XRN2	0	genome.wustl.edu	37	20	21312985	21312985	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	20	21312985	21312985	C	T	SNP	XRN2	ENST00000377191	human	ensembl	74_37	+1	known	silent	c.765	p.F255	1.000	pfam_Put_53exo,superfamily_Znf_CCHC,pirsf_5_3_exoribonuclease_2	pfam_Put_53exo,superfamily_Znf_CCHC,pirsf_5_3_exoribonuclease_2	-	no_errors	XRN2	HGNC	ENSG00000088930				71	0	0	53	10	15.873
PTPRT	0	genome.wustl.edu	37	20	40864897	40864897	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	20	40864897	40864897	T	G	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	silent	c.2371	p.R791	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				98	0	0	95	15	13.6364
DOK5	0	genome.wustl.edu	37	20	53171511	53171511	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	20	53171511	53171511	A	G	SNP	DOK5	ENST00000262593	human	ensembl	74_37	+1	known	missense	c.106	p.S36G	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK5	HGNC	ENSG00000101134				46	0	0	49	7	12.5
IGHV1OR21-1	0	genome.wustl.edu	37	21	10862951	10862951	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	21	10862951	10862951	T	C	SNP	IGHV1OR21-1	ENST00000559480	human	ensembl	74_37	+1	known	missense	c.247	p.F83L	0.004	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGHV1OR21-1	HGNC	ENSG00000169861				404	0	0	225	25	10
BAGE2	0	genome.wustl.edu	37	21	11049470	11049470	+	RNA	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	21	11049470	11049470	G	A	SNP	BAGE2	ENST00000470054	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172				221	0	0	117	7	5.64516
SAMSN1	0	genome.wustl.edu	37	21	15858379	15858379	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	21	15858379	15858379	A	C	SNP	SAMSN1	ENST00000400566	human	ensembl	74_37	-1	known	missense	c.976	p.L326V	0.990	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307				48	0	0	37	6	13.9535
TMPRSS15	0	genome.wustl.edu	37	21	19704431	19704431	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	21	19704431	19704431	A	C	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	missense	c.1624	p.F542V	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				106	0	0	42	9	17.6471
RCAN1	0	genome.wustl.edu	37	21	35893737	35893737	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	21	35893737	35893737	T	C	SNP	RCAN1	ENST00000492600	human	ensembl	74_37	-1	putative	missense	c.481	p.R161G	0.000	NULL	pfam_Calcipressin	-	no_errors	RCAN1	HGNC	ENSG00000159200				38	0	0	26	3	10.3448
PRDM15	0	genome.wustl.edu	37	21	43221454	43221454	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	21	43221454	43221454	C	T	SNP	PRDM15	ENST00000269844	human	ensembl	74_37	-1	known	silent	c.4470	p.A1490	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956				101	1	0.980392	95	23	19.4915
LIF	0	genome.wustl.edu	37	22	30640813	30640813	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	22	30640813	30640813	G	T	SNP	LIF	ENST00000249075	human	ensembl	74_37	-1	known	missense	c.129	p.N43K	1.000	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin,prints_Leukemia_IF	pfam_Leukemia_IF/oncostatin,superfamily_4_helix_cytokine-like_core,smart_Leukemia_IF/oncostatin,prints_Leukemia_IF	-	no_errors	LIF	HGNC	ENSG00000128342				68	0	0	70	6	7.89474
CACNG2	0	genome.wustl.edu	37	22	36960743	36960743	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	22	36960743	36960743	C	T	SNP	CACNG2	ENST00000300105	human	ensembl	74_37	-1	known	silent	c.627	p.R209	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g2su,prints_Claudin	-	no_errors	CACNG2	HGNC	ENSG00000166862				261	0	0	305	36	10.5572
ZBED2	0	genome.wustl.edu	37	3	111312683	111312683	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	111312683	111312683	C	T	SNP	ZBED2	ENST00000317012	human	ensembl	74_37	-1	known	silent	c.366	p.Q122	0.010	NULL	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED2	HGNC	ENSG00000177494				90	0	0	110	8	6.77966
SLCO2A1	0	genome.wustl.edu	37	3	133748643	133748643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	133748643	133748643	C	T	SNP	SLCO2A1	ENST00000310926	human	ensembl	74_37	-1	known	missense	c.4	p.G2R	0.999	pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO2A1	HGNC	ENSG00000174640				9	0	0	6	3	33.3333
C3orf20	0	genome.wustl.edu	37	3	14803068	14803068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	14803068	14803068	G	A	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	missense	c.2441	p.R814Q	0.005	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				103	0	0	60	20	25
SH3BP5	0	genome.wustl.edu	37	3	15300337	15300337	+	Splice_Site	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	15300337	15300337	C	T	SNP	SH3BP5	ENST00000383791	human	ensembl	74_37	-1	known	splice_site	c.889+1	e7+1	1.000	-	-	-	no_errors	SH3BP5	HGNC	ENSG00000131370				64	0	0	30	31	50.8197
SLITRK3	0	genome.wustl.edu	37	3	164905856	164905856	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	164905856	164905856	T	C	SNP	SLITRK3	ENST00000241274	human	ensembl	74_37	-1	known	silent	c.2763	p.Q921	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871				153	1	0.649351	70	42	37.5
OSTN	0	genome.wustl.edu	37	3	190936627	190936627	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	190936627	190936627	T	G	SNP	OSTN	ENST00000339051	human	ensembl	74_37	+1	known	missense	c.194	p.L65R	1.000	pfam_Osteocrin	pfam_Osteocrin	-	no_errors	OSTN	HGNC	ENSG00000188729				72	0	0	38	13	25.4902
CCDC50	0	genome.wustl.edu	37	3	191074885	191074885	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	191074885	191074885	G	C	SNP	CCDC50	ENST00000392456	human	ensembl	74_37	+1	known	missense	c.58	p.D20H	1.000	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492				44	0	0	22	7	24.1379
ACVR2B	0	genome.wustl.edu	37	3	38524780	38524780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	38524780	38524780	C	T	SNP	ACVR2B	ENST00000352511	human	ensembl	74_37	+1	known	missense	c.1496	p.S499F	1.000	prints_TGFB_receptor	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2B	HGNC	ENSG00000114739				96	0	0	73	20	21.5054
CNTN3	0	genome.wustl.edu	37	3	74350898	74350898	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	74350898	74350898	T	C	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	silent	c.1845	p.Q615	0.314	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				76	0	0	40	9	18.3673
EPHA6	0	genome.wustl.edu	37	3	96706694	96706694	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	96706694	96706694	T	A	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	missense	c.971	p.V324D	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224				189	0	0	91	37	28.9062
OR5H15	0	genome.wustl.edu	37	3	97887637	97887637	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	97887637	97887637	T	G	SNP	OR5H15	ENST00000356526	human	ensembl	74_37	+1	known	missense	c.94	p.L32V	0.956	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H15	HGNC	ENSG00000233412				304	0	0	145	55	27.5
USP38	0	genome.wustl.edu	37	4	144134809	144134809	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	144134809	144134809	T	G	SNP	USP38	ENST00000307017	human	ensembl	74_37	+1	known	silent	c.1680	p.T560	0.100	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP38	HGNC	ENSG00000170185				40	0	0	20	11	35.4839
GYPE	0	genome.wustl.edu	37	4	144826643	144826643	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	144826643	144826643	G	C	SNP	GYPE	ENST00000358615	human	ensembl	74_37	-1	known	missense	c.18	p.I6M	0.000	NULL	NULL	-	no_errors	GYPE	HGNC	ENSG00000197465				60	0	0	23	8	25.8065
FBXW7	0	genome.wustl.edu	37	4	153251934	153251934	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	153251934	153251934	G	A	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	nonsense	c.1072	p.Q358*	1.000	superfamily_F-box_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				116	0	0	29	38	56.7164
RBM46	0	genome.wustl.edu	37	4	155719399	155719399	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	155719399	155719399	T	C	SNP	RBM46	ENST00000281722	human	ensembl	74_37	+1	known	silent	c.588	p.A196	0.999	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM46	HGNC	ENSG00000151962				54	0	0	28	11	28.2051
TLL1	0	genome.wustl.edu	37	4	166999084	166999084	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	166999084	166999084	A	C	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.2344	p.S782R	0.978	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				63	0	0	28	8	22.2222
HSP90AA4P	0	genome.wustl.edu	37	4	190396320	190396320	+	RNA	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	190396320	190396320	C	T	SNP	HSP90AA4P	ENST00000378770	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSP90AA4P	HGNC	ENSG00000205100				105	0	0	32	29	47.541
EVC2	0	genome.wustl.edu	37	4	5696169	5696169	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	5696169	5696169	T	C	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	missense	c.343	p.T115A	0.389	NULL	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				70	0	0	45	13	22.4138
UBA6-AS1	0	genome.wustl.edu	37	4	68928500	68928500	+	RNA	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	68928500	68928500	G	A	SNP	UBA6-AS1	ENST00000500538	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	UBA6-AS1	HGNC	ENSG00000248049				119	0	0	63	24	27.5862
ODAM	0	genome.wustl.edu	37	4	71068595	71068595	+	Silent	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	71068595	71068595	T	A	SNP	ODAM	ENST00000396094	human	ensembl	74_37	+1	known	silent	c.771	p.A257	0.000	NULL	NULL	-	no_errors	ODAM	HGNC	ENSG00000109205				54	0	0	39	12	23.5294
IBSP	0	genome.wustl.edu	37	4	88732666	88732666	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	88732666	88732666	A	G	SNP	IBSP	ENST00000226284	human	ensembl	74_37	+1	known	silent	c.558	p.A186	0.000	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559				48	0	0	30	12	28.5714
PPM1K	0	genome.wustl.edu	37	4	89198370	89198370	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	89198370	89198370	A	C	SNP	PPM1K	ENST00000608933	human	ensembl	74_37	-1	known	missense	c.466	p.L156V	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1K	HGNC	ENSG00000163644				59	0	0	44	6	12
CTNND2	0	genome.wustl.edu	37	5	11098707	11098707	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	11098707	11098707	A	C	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.2617	p.L873V	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				89	0	0	72	13	15.2941
CTNND2	0	genome.wustl.edu	37	5	11364952	11364952	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	11364952	11364952	A	G	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	silent	c.1228	p.L410	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				51	0	0	50	19	27.5362
FAM170A	0	genome.wustl.edu	37	5	118969843	118969843	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	118969843	118969843	C	A	SNP	FAM170A	ENST00000515256	human	ensembl	74_37	+1	known	missense	c.400	p.Q134K	0.043	NULL	NULL	-	no_errors	FAM170A	HGNC	ENSG00000164334				96	0	0	56	4	6.66667
SNCAIP	0	genome.wustl.edu	37	5	121786608	121786608	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	121786608	121786608	A	C	SNP	SNCAIP	ENST00000379533	human	ensembl	74_37	+1	known	missense	c.2207	p.K736T	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692				97	0	0	40	21	34.4262
DNAH5	0	genome.wustl.edu	37	5	13717530	13717530	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	13717530	13717530	T	C	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.12599	p.K4200R	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				53	0	0	45	16	26.2295
DNAH5	0	genome.wustl.edu	37	5	13751329	13751329	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	13751329	13751329	A	C	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.11069	p.F3690C	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				66	0	0	50	7	12.2807
DNAH5	0	genome.wustl.edu	37	5	13824402	13824402	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	13824402	13824402	A	C	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.6485	p.L2162R	0.967	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				82	0	0	53	9	14.5161
DNAH5	0	genome.wustl.edu	37	5	13864531	13864531	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	13864531	13864531	A	C	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.4571	p.L1524R	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				81	0	0	45	11	19.6429
HARS	0	genome.wustl.edu	37	5	140054668	140054668	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	140054668	140054668	A	G	SNP	HARS	ENST00000504156	human	ensembl	74_37	-1	known	silent	c.1245	p.S415	0.970	pfam_Anticodon-bd,superfamily_Anticodon-bd,pirsf_HisRS/HisZ,tigrfam_His-tRNA-ligase	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_His-tRNA-ligase	-	no_errors	HARS	HGNC	ENSG00000170445				97	0	0	89	6	6.31579
PCDHA7	0	genome.wustl.edu	37	5	140216285	140216285	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	140216285	140216285	A	C	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.2317	p.S773R	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				67	0	0	63	5	7.35294
PCDHB3	0	genome.wustl.edu	37	5	140481107	140481107	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	140481107	140481107	T	G	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.874	p.F292V	0.687	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				69	0	0	46	20	30.303
PCDHB7	0	genome.wustl.edu	37	5	140554081	140554081	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	140554081	140554081	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	silent	c.1665	p.N555	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				135	0	0	133	96	41.9214
SLC25A2	0	genome.wustl.edu	37	5	140683221	140683221	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	140683221	140683221	A	C	SNP	SLC25A2	ENST00000239451	human	ensembl	74_37	-1	known	missense	c.212	p.L71R	0.912	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A2	HGNC	ENSG00000120329				116	0	0	92	24	20.6897
PCDHGA7	0	genome.wustl.edu	37	5	140764249	140764249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	140764249	140764249	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	missense	c.1783	p.D595N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537				192	0	0	185	12	6.09137
PCDHGA12	0	genome.wustl.edu	37	5	140812471	140812471	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	140812471	140812471	G	C	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.2145	p.R715S	0.572	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				205	0	0	248	14	5.34351
CNOT8	0	genome.wustl.edu	37	5	154251334	154251334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	154251334	154251334	G	A	SNP	CNOT8	ENST00000285896	human	ensembl	74_37	+1	known	missense	c.518	p.R173H	1.000	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	CNOT8	HGNC	ENSG00000155508				59	0	0	32	13	28.8889
CYFIP2	0	genome.wustl.edu	37	5	156786056	156786056	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	156786056	156786056	A	C	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	missense	c.2792	p.N931T	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163				210	0	0	151	32	17.4863
C1QTNF2	0	genome.wustl.edu	37	5	159776372	159776372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	159776372	159776372	G	A	SNP	C1QTNF2	ENST00000393975	human	ensembl	74_37	-1	known	missense	c.796	p.R266W	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF2	HGNC	ENSG00000145861				140	0	0	99	34	25.5639
FAM153A	0	genome.wustl.edu	37	5	177171957	177171957	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	177171957	177171957	G	A	SNP	FAM153A	ENST00000360669	human	ensembl	74_37	-1	known	missense	c.40	p.R14W	0.012	prints_FAM153	prints_FAM153	-	no_errors	FAM153A	HGNC	ENSG00000170074				76	0	0	52	21	28.7671
ADAMTS12	0	genome.wustl.edu	37	5	33616122	33616122	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	33616122	33616122	T	G	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.2199	p.E733D	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				78	0	0	53	9	14.5161
RXFP3	0	genome.wustl.edu	37	5	33937101	33937101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	33937101	33937101	G	A	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	missense	c.256	p.V86M	0.660	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				65	0	0	80	39	32.7731
PLCXD3	0	genome.wustl.edu	37	5	41382380	41382380	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	41382380	41382380	T	G	SNP	PLCXD3	ENST00000328457	human	ensembl	74_37	-1	known	missense	c.360	p.K120N	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD3	HGNC	ENSG00000182836				125	0	0	78	31	28.4404
PLCXD3	0	genome.wustl.edu	37	5	41382435	41382435	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	41382435	41382435	T	C	SNP	PLCXD3	ENST00000328457	human	ensembl	74_37	-1	known	missense	c.305	p.K102R	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD3	HGNC	ENSG00000182836				79	0	0	66	13	16.4557
HCN1	0	genome.wustl.edu	37	5	45645680	45645680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	45645680	45645680	C	T	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.456	p.M152I	1.000	pfam_Ion_trans_N	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				50	0	0	43	10	18.8679
EMB	0	genome.wustl.edu	37	5	49701604	49701604	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	49701604	49701604	A	C	SNP	EMB	ENST00000303221	human	ensembl	74_37	-1	known	missense	c.555	p.C185W	0.027	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	EMB	HGNC	ENSG00000170571				49	0	0	38	5	11.6279
ANKRD55	0	genome.wustl.edu	37	5	55412549	55412549	+	Silent	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	55412549	55412549	C	T	SNP	ANKRD55	ENST00000341048	human	ensembl	74_37	-1	known	silent	c.858	p.E286	0.983	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD55	HGNC	ENSG00000164512				59	0	0	34	13	27.6596
TPPP	0	genome.wustl.edu	37	5	665397	665397	+	Silent	SNP	C	C	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	665397	665397	C	A	SNP	TPPP	ENST00000360578	human	ensembl	74_37	-1	known	silent	c.480	p.S160	0.979	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP	HGNC	ENSG00000171368				41	0	0	36	14	28
GPR98	0	genome.wustl.edu	37	5	89949308	89949308	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	89949308	89949308	G	C	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.3917	p.G1306A	0.991	superfamily_ConA-like_lec_gl_sf	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				37	0	0	21	7	25
GPR98	0	genome.wustl.edu	37	5	90079735	90079735	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	90079735	90079735	T	C	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.13514	p.I4505T	0.963	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				29	0	0	7	4	36.3636
SLC35F1	0	genome.wustl.edu	37	6	118635388	118635388	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	118635388	118635388	A	G	SNP	SLC35F1	ENST00000360388	human	ensembl	74_37	+1	known	silent	c.1200	p.E400	1.000	NULL	pfam_SLC35_F1/F2/F6,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376				73	0	0	73	10	12.0482
KIAA1244	0	genome.wustl.edu	37	6	138584055	138584055	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	138584055	138584055	T	G	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	missense	c.1435	p.F479V	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379				24	0	0	24	9	27.2727
SYNE1	0	genome.wustl.edu	37	6	152557432	152557432	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	152557432	152557432	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.20206	p.K6736Q	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				27	0	0	27	7	20.5882
SYNE1	0	genome.wustl.edu	37	6	152722378	152722378	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	152722378	152722378	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.6924	p.Q2308H	0.126	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				62	0	0	47	9	16.0714
MYCT1	0	genome.wustl.edu	37	6	153019200	153019200	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	153019200	153019200	A	G	SNP	MYCT1	ENST00000367245	human	ensembl	74_37	+1	known	missense	c.163	p.S55G	0.998	NULL	NULL	-	no_errors	MYCT1	HGNC	ENSG00000120279				35	0	0	16	8	33.3333
IGF2R	0	genome.wustl.edu	37	6	160445719	160445719	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	160445719	160445719	A	T	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.629	p.N210I	0.212	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				108	0	0	86	27	23.8938
PARK2	0	genome.wustl.edu	37	6	162683735	162683735	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	162683735	162683735	T	C	SNP	PARK2	ENST00000366898	human	ensembl	74_37	-1	known	silent	c.234	p.Q78	0.000	pirsf_Parkin	pfam_Ubiquitin_dom,pfam_Znf_C6HC,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,smart_Znf_C6HC,pirsf_Parkin,pfscan_Ubiquitin_supergroup,prints_Parkin,prints_Ubiquitin	-	no_errors	PARK2	HGNC	ENSG00000185345				85	0	0	93	8	7.92079
C6orf118	0	genome.wustl.edu	37	6	165723051	165723051	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	165723051	165723051	A	C	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	missense	c.25	p.L9V	0.026	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				54	0	0	47	3	6
PRR18	0	genome.wustl.edu	37	6	166721313	166721313	+	Silent	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	166721313	166721313	G	C	SNP	PRR18	ENST00000322583	human	ensembl	74_37	-1	known	silent	c.318	p.T106	0.020	NULL	NULL	-	no_errors	PRR18	HGNC	ENSG00000176381				8	0	0	10	8	44.4444
FAM8A1	0	genome.wustl.edu	37	6	17600920	17600920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	17600920	17600920	G	A	SNP	FAM8A1	ENST00000259963	human	ensembl	74_37	+1	known	missense	c.280	p.E94K	0.752	NULL	pfam_RDD	-	no_errors	FAM8A1	HGNC	ENSG00000137414				39	0	0	44	5	10.2041
NUP153	0	genome.wustl.edu	37	6	17629488	17629488	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	17629488	17629488	A	C	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	missense	c.3035	p.F1012C	1.000	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				57	0	0	35	14	28.5714
TNXB	0	genome.wustl.edu	37	6	32011292	32011292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	32011292	32011292	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.11566	p.E3856K	0.674	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				14	0	0	20	7	25.9259
HLA-DPB1	0	genome.wustl.edu	37	6	33048641	33048641	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	33048641	33048641	A	C	SNP	HLA-DPB1	ENST00000418931	human	ensembl	74_37	+1	known	missense	c.293	p.K98T	0.000	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DPB1	HGNC	ENSG00000223865				86	0	0	90	23	20.354
RXRB	0	genome.wustl.edu	37	6	33166234	33166234	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	33166234	33166234	G	C	SNP	RXRB	ENST00000374680	human	ensembl	74_37	-1	known	nonsense	c.491	p.S164*	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	RXRB	HGNC	ENSG00000204231				159	0	0	138	34	19.7674
PKHD1	0	genome.wustl.edu	37	6	51656136	51656136	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	51656136	51656136	A	G	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.8338	p.F2780L	0.523	pfam_G8_domain	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				77	0	0	89	14	13.5922
GSTA4	0	genome.wustl.edu	37	6	52843163	52843163	+	RNA	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	52843163	52843163	T	G	SNP	GSTA4	ENST00000477599	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GSTA4	HGNC	ENSG00000170899				31	0	0	36	18	33.3333
TINAG	0	genome.wustl.edu	37	6	54212312	54212312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	54212312	54212312	G	A	SNP	TINAG	ENST00000259782	human	ensembl	74_37	+1	known	missense	c.896	p.R299H	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251				45	0	0	36	15	29.4118
GFRAL	0	genome.wustl.edu	37	6	55266591	55266591	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	55266591	55266591	T	G	SNP	GFRAL	ENST00000340465	human	ensembl	74_37	+1	known	silent	c.1125	p.T375	0.952	NULL	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GFRAL	HGNC	ENSG00000187871				75	0	0	27	6	18.1818
COL21A1	0	genome.wustl.edu	37	6	55990378	55990378	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	55990378	55990378	A	G	SNP	COL21A1	ENST00000244728	human	ensembl	74_37	-1	known	missense	c.1637	p.F546S	1.000	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL21A1	HGNC	ENSG00000124749				19	0	0	16	5	23.8095
EYS	0	genome.wustl.edu	37	6	66094372	66094372	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	66094372	66094372	T	A	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	missense	c.1206	p.E402D	1.000	smart_EG-like_dom	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107				32	0	0	22	3	12
COL19A1	0	genome.wustl.edu	37	6	70639447	70639447	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	70639447	70639447	T	A	SNP	COL19A1	ENST00000322773	human	ensembl	74_37	+1	known	missense	c.521	p.L174H	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293				81	0	0	92	18	16.3636
TBX18	0	genome.wustl.edu	37	6	85466473	85466473	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	6	85466473	85466473	T	G	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	missense	c.714	p.Q238H	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				61	0	0	60	10	14.2857
KMT2E	0	genome.wustl.edu	37	7	104753074	104753074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	104753074	104753074	C	T	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.4871	p.A1624V	0.012	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				146	0	0	103	35	25.3623
DOCK4	0	genome.wustl.edu	37	7	111387326	111387326	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	111387326	111387326	T	G	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	missense	c.4590	p.Q1530H	1.000	pfam_DOCK_C	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				37	0	0	19	8	29.6296
PPP1R3A	0	genome.wustl.edu	37	7	113518066	113518066	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	113518066	113518066	T	G	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.3081	p.E1027D	0.097	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				194	0	0	106	42	28.3784
PTPRZ1	0	genome.wustl.edu	37	7	121651971	121651971	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	121651971	121651971	T	C	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	silent	c.2871	p.T957	0.693	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				140	0	0	64	33	34.0206
SMO	0	genome.wustl.edu	37	7	128846344	128846344	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	128846344	128846344	T	C	SNP	SMO	ENST00000249373	human	ensembl	74_37	+1	known	missense	c.1180	p.Y394H	1.000	pfam_Frizzled,pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602				238	0	0	204	60	22.7273
FERD3L	0	genome.wustl.edu	37	7	19184942	19184942	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	19184942	19184942	T	C	SNP	FERD3L	ENST00000275461	human	ensembl	74_37	-1	known	missense	c.44	p.D15G	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	FERD3L	HGNC	ENSG00000146618				61	0	0	53	20	27.3973
DNAH11	0	genome.wustl.edu	37	7	21629008	21629008	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	21629008	21629008	A	C	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.2156	p.N719T	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				71	0	0	36	13	26.5306
BBS9	0	genome.wustl.edu	37	7	33427710	33427710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	33427710	33427710	C	T	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	missense	c.2069	p.A690V	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507				156	0	0	111	37	25
AMPH	0	genome.wustl.edu	37	7	38462019	38462019	+	Splice_Site	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	38462019	38462019	A	G	SNP	AMPH	ENST00000356264	human	ensembl	74_37	-1	known	splice_site	c.1272+2	e16+2	1.000	-	-	-	no_errors	AMPH	HGNC	ENSG00000078053				149	0	0	92	32	25.8065
GLI3	0	genome.wustl.edu	37	7	42005876	42005876	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	42005876	42005876	T	G	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.2795	p.K932T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				39	0	0	56	17	23.2877
ZMIZ2	0	genome.wustl.edu	37	7	44801438	44801438	+	Silent	SNP	C	C	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	44801438	44801438	C	G	SNP	ZMIZ2	ENST00000309315	human	ensembl	74_37	+1	known	silent	c.1530	p.L510	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515				65	0	0	62	9	12.6761
ABCA13	0	genome.wustl.edu	37	7	48312083	48312083	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	48312083	48312083	A	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.2820	p.E940D	0.003	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				34	0	0	43	15	25.8621
ABCA13	0	genome.wustl.edu	37	7	48313132	48313132	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	48313132	48313132	A	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.3869	p.E1290A	0.003	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				15	0	0	7	4	36.3636
COL28A1	0	genome.wustl.edu	37	7	7412809	7412809	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	7412809	7412809	G	A	SNP	COL28A1	ENST00000399429	human	ensembl	74_37	-1	known	missense	c.2728	p.R910C	0.927	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018				55	0	0	27	28	50.9091
MAGI2	0	genome.wustl.edu	37	7	77885431	77885431	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	77885431	77885431	G	C	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	missense	c.1876	p.Q626E	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				34	0	0	20	8	28.5714
GLCCI1	0	genome.wustl.edu	37	7	8126036	8126036	+	Silent	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	8126036	8126036	G	A	SNP	GLCCI1	ENST00000223145	human	ensembl	74_37	+1	known	silent	c.1512	p.T504	0.004	NULL	NULL	-	no_errors	GLCCI1	HGNC	ENSG00000106415				348	0	0	182	182	50
HGF	0	genome.wustl.edu	37	7	81346652	81346652	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	81346652	81346652	T	G	SNP	HGF	ENST00000222390	human	ensembl	74_37	-1	known	missense	c.1301	p.K434T	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991				94	0	0	46	23	33.3333
SEMA3E	0	genome.wustl.edu	37	7	82996981	82996981	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	82996981	82996981	T	C	SNP	SEMA3E	ENST00000307792	human	ensembl	74_37	-1	known	missense	c.2249	p.K750R	1.000	NULL	pfam_Semap_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3E	HGNC	ENSG00000170381				179	0	0	147	48	24.6154
COL1A2	0	genome.wustl.edu	37	7	94052389	94052389	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	94052389	94052389	T	G	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.2524	p.F842V	0.997	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				137	0	0	98	36	26.8657
TRRAP	0	genome.wustl.edu	37	7	98547092	98547092	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	98547092	98547092	A	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.4820	p.N1607I	1.000	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				74	0	0	73	27	27
CNPY4	0	genome.wustl.edu	37	7	99722428	99722428	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	7	99722428	99722428	G	T	SNP	CNPY4	ENST00000262932	human	ensembl	74_37	+1	known	nonsense	c.664	p.E222*	0.277	NULL	pfam_DUF3456	-	no_errors	CNPY4	HGNC	ENSG00000166997				115	0	0	68	36	34.6154
RRM2B	0	genome.wustl.edu	37	8	103226371	103226371	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	103226371	103226371	A	T	SNP	RRM2B	ENST00000251810	human	ensembl	74_37	-1	known	missense	c.700	p.F234I	1.000	pfam_RNR_small,superfamily_Ferritin-like_SF	pfam_RNR_small,superfamily_Ferritin-like_SF	-	no_errors	RRM2B	HGNC	ENSG00000048392				63	0	0	48	7	12.7273
RIMS2	0	genome.wustl.edu	37	8	105261784	105261784	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	105261784	105261784	T	C	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.3659	p.L1220P	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				51	0	0	34	5	12.8205
CSMD3	0	genome.wustl.edu	37	8	113529326	113529326	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	113529326	113529326	T	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.4693	p.R1565	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				88	0	0	68	10	12.8205
LONRF1	0	genome.wustl.edu	37	8	12586497	12586497	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	12586497	12586497	T	C	SNP	LONRF1	ENST00000398246	human	ensembl	74_37	-1	known	silent	c.1923	p.T641	0.995	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF1	HGNC	ENSG00000154359				94	0	0	59	4	6.34921
ZNF251	0	genome.wustl.edu	37	8	145948654	145948654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	145948654	145948654	C	T	SNP	ZNF251	ENST00000292562	human	ensembl	74_37	-1	known	missense	c.391	p.A131T	0.007	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169				51	0	0	55	14	20.2899
SDAD1P1	0	genome.wustl.edu	37	8	26237619	26237619	+	RNA	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	26237619	26237619	T	G	SNP	SDAD1P1	ENST00000519902	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDAD1P1	HGNC	ENSG00000228451				59	0	0	34	9	20.9302
NRG1	0	genome.wustl.edu	37	8	32621594	32621594	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	32621594	32621594	C	T	SNP	NRG1	ENST00000338921	human	ensembl	74_37	+1	known	missense	c.1621	p.P541S	1.000	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Ig-like_dom,prints_Neuregulin	-	no_errors	NRG1	HGNC	ENSG00000157168				51	0	0	36	21	36.8421
ADAM18	0	genome.wustl.edu	37	8	39587554	39587554	+	RNA	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	39587554	39587554	T	G	SNP	ADAM18	ENST00000523755	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAM18	HGNC	ENSG00000168619				32	0	0	16	4	20
PREX2	0	genome.wustl.edu	37	8	69028107	69028107	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	69028107	69028107	T	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.3266	p.V1089A	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				97	0	0	101	18	15.1261
NCOA2	0	genome.wustl.edu	37	8	71036127	71036127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	71036127	71036127	G	A	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.4285	p.P1429S	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				39	0	0	49	6	10.9091
KCNB2	0	genome.wustl.edu	37	8	73480109	73480109	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	73480109	73480109	A	G	SNP	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	missense	c.140	p.E47G	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				139	0	0	166	24	12.6316
ZFHX4	0	genome.wustl.edu	37	8	77764494	77764494	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	77764494	77764494	G	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.5337	p.K1779N	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				19	0	0	15	11	42.3077
DECR1	0	genome.wustl.edu	37	8	91033213	91033213	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	8	91033213	91033213	C	G	SNP	DECR1	ENST00000220764	human	ensembl	74_37	+1	known	missense	c.494	p.T165S	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	DECR1	HGNC	ENSG00000104325				51	0	0	49	8	14.0351
CCDC180	0	genome.wustl.edu	37	9	100124034	100124034	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	100124034	100124034	A	C	SNP	CCDC180	ENST00000375202	human	ensembl	74_37	+1	known	missense	c.3642	p.E1214D	0.001	NULL	NULL	-	no_errors	CCDC180	HGNC	ENSG00000197816				64	0	0	49	12	19.6721
OR13F1	0	genome.wustl.edu	37	9	107267289	107267289	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	107267289	107267289	T	G	SNP	OR13F1	ENST00000334726	human	ensembl	74_37	+1	known	missense	c.746	p.V249G	0.228	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13F1	HGNC	ENSG00000186881				132	0	0	60	30	33.3333
OR1L6	0	genome.wustl.edu	37	9	125512140	125512140	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	125512140	125512140	A	C	SNP	OR1L6	ENST00000373684	human	ensembl	74_37	+1	known	missense	c.122	p.N41T	0.304	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L6	HGNC	ENSG00000171459				203	0	0	135	51	27.4194
SWI5	0	genome.wustl.edu	37	9	131038425	131038425	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	131038425	131038425	A	C	SNP	SWI5	ENST00000320188	human	ensembl	74_37	+1	known	missense	c.1	p.M1L	0.000	NULL	pfam_DNA-repair_Swi5	-	no_errors	SWI5	HGNC	ENSG00000175854				143	0	0	106	25	19.084
TRUB2	0	genome.wustl.edu	37	9	131077859	131077859	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	131077859	131077859	G	T	SNP	TRUB2	ENST00000372890	human	ensembl	74_37	-1	known	missense	c.365	p.A122D	0.986	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom	-	no_errors	TRUB2	HGNC	ENSG00000167112				40	0	0	13	6	31.5789
ZER1	0	genome.wustl.edu	37	9	131515471	131515471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	131515471	131515471	G	A	SNP	ZER1	ENST00000291900	human	ensembl	74_37	-1	known	missense	c.718	p.R240W	0.999	NULL	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ZER1	HGNC	ENSG00000160445				10	0	0	10	2	16.6667
COL5A1	0	genome.wustl.edu	37	9	137711978	137711978	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	137711978	137711978	T	G	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.4463	p.I1488S	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				93	0	0	37	62	62.6263
DENND4C	0	genome.wustl.edu	37	9	19372168	19372168	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	19372168	19372168	T	G	SNP	DENND4C	ENST00000602925	human	ensembl	74_37	+1	known	missense	c.5727	p.I1909M	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145				114	0	0	53	27	33.75
SLC24A2	0	genome.wustl.edu	37	9	19786835	19786835	+	Silent	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	19786835	19786835	A	C	SNP	SLC24A2	ENST00000341998	human	ensembl	74_37	-1	known	silent	c.30	p.T10	0.000	NULL	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A2	HGNC	ENSG00000155886				116	0	0	79	35	30.7018
TAF1L	0	genome.wustl.edu	37	9	32630782	32630782	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	32630782	32630782	A	C	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.4796	p.V1599G	1.000	pirsf_TAF1_animal,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				109	0	0	43	22	33.8462
TAF1L	0	genome.wustl.edu	37	9	32632465	32632465	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	32632465	32632465	T	C	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.3113	p.K1038R	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				315	0	0	190	49	20.5021
SIT1	0	genome.wustl.edu	37	9	35650844	35650844	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	35650844	35650844	G	C	SNP	SIT1	ENST00000259608	human	ensembl	74_37	-1	known	missense	c.7	p.Q3E	0.000	NULL	NULL	-	no_errors	SIT1	HGNC	ENSG00000137078				17	0	0	16	6	27.2727
ENSG00000224267	0	genome.wustl.edu	37	9	68324718	68324718	+	RNA	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	68324718	68324718	A	G	SNP	ENSG00000224267	ENST00000431077	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-149F8.5	Clone_based_vega_gene	ENSG00000224267				17	0	0	10	4	28.5714
APBA1	0	genome.wustl.edu	37	9	72131002	72131002	+	Silent	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	72131002	72131002	T	C	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	silent	c.1125	p.K375	1.000	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				144	0	0	89	41	31.5385
NXF5	0	genome.wustl.edu	37	X	101091790	101091790	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	101091790	101091790	A	C	SNP	NXF5	ENST00000263032	human	ensembl	74_37	-1	known	missense	c.1096	p.L366V	0.015	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952				137	0	0	65	16	19.7531
ARHGEF6	0	genome.wustl.edu	37	X	135750188	135750188	+	Nonstop_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	135750188	135750188	T	G	SNP	ARHGEF6	ENST00000250617	human	ensembl	74_37	-1	known	nonstop	c.2331	p.*777Y	0.963	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675				134	0	0	63	20	24.0964
MCF2	0	genome.wustl.edu	37	X	138714595	138714595	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	138714595	138714595	A	C	SNP	MCF2	ENST00000370578	human	ensembl	74_37	-1	known	missense	c.505	p.L169V	1.000	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977				69	0	0	27	9	25
MAGEC3	0	genome.wustl.edu	37	X	140953386	140953386	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	140953386	140953386	T	G	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	missense	c.253	p.F85V	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509				107	0	0	45	25	35.7143
MAGEC1	0	genome.wustl.edu	37	X	140994814	140994814	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	140994814	140994814	T	C	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	missense	c.1624	p.S542P	0.002	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				462	0	0	213	60	21.978
PASD1	0	genome.wustl.edu	37	X	150773196	150773196	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	150773196	150773196	T	G	SNP	PASD1	ENST00000370357	human	ensembl	74_37	+1	known	missense	c.107	p.V36G	0.000	superfamily_PAS,smart_PAS	superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049				35	0	0	8	5	38.4615
ATP2B3	0	genome.wustl.edu	37	X	152830478	152830478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	152830478	152830478	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.3259	p.E1087K	0.668	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				33	0	0	7	5	41.6667
FLNA	0	genome.wustl.edu	37	X	153592919	153592919	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	153592919	153592919	G	A	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.1997	p.A666V	0.988	superfamily_Ig_E-set,smart_Filamin	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				102	0	0	39	40	50.6329
GAB3	0	genome.wustl.edu	37	X	153940729	153940729	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	153940729	153940729	T	G	SNP	GAB3	ENST00000424127	human	ensembl	74_37	-1	known	missense	c.844	p.S282R	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219				172	0	0	104	33	24.0876
REPS2	0	genome.wustl.edu	37	X	17153480	17153480	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	17153480	17153480	A	C	SNP	REPS2	ENST00000357277	human	ensembl	74_37	+1	known	missense	c.1759	p.S587R	0.027	NULL	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS2	HGNC	ENSG00000169891				239	0	0	119	62	34.2541
MAGEB3	0	genome.wustl.edu	37	X	30254229	30254229	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	30254229	30254229	A	G	SNP	MAGEB3	ENST00000361644	human	ensembl	74_37	+1	known	missense	c.188	p.K63R	0.001	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB3	HGNC	ENSG00000198798				40	0	0	22	4	15.3846
DMD	0	genome.wustl.edu	37	X	32360278	32360278	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	32360278	32360278	T	C	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.5861	p.K1954R	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				56	0	0	34	8	19.0476
DMD	0	genome.wustl.edu	37	X	32430014	32430014	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	32430014	32430014	T	G	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.4088	p.K1363T	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				34	0	0	15	14	48.2759
MAGEB16	0	genome.wustl.edu	37	X	35821201	35821201	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	35821201	35821201	A	G	SNP	MAGEB16	ENST00000399992	human	ensembl	74_37	+1	known	silent	c.984	p.K328	0.158	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB16	HGNC	ENSG00000189023				49	0	0	28	5	15.1515
CACNA1F	0	genome.wustl.edu	37	X	49071806	49071806	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	49071806	49071806	T	G	SNP	CACNA1F	ENST00000376265	human	ensembl	74_37	-1	known	missense	c.3467	p.N1156T	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001				46	0	0	14	18	56.25
CCNB3	0	genome.wustl.edu	37	X	50051704	50051704	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	50051704	50051704	A	C	SNP	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	missense	c.535	p.K179Q	0.001	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				120	0	0	31	36	53.7313
GPR173	0	genome.wustl.edu	37	X	53106155	53106155	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	53106155	53106155	A	G	SNP	GPR173	ENST00000332582	human	ensembl	74_37	+1	known	missense	c.352	p.S118G	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR173	HGNC	ENSG00000184194				110	0	0	84	13	13.4021
PFKFB1	0	genome.wustl.edu	37	X	54987257	54987257	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	54987257	54987257	T	A	SNP	PFKFB1	ENST00000375006	human	ensembl	74_37	-1	known	missense	c.317	p.K106M	1.000	pfam_6Phosfructo_kin,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB1	HGNC	ENSG00000158571				72	0	0	40	11	21.5686
APEX2	0	genome.wustl.edu	37	X	55026917	55026917	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	55026917	55026917	A	G	SNP	APEX2	ENST00000374987	human	ensembl	74_37	+1	known	missense	c.62	p.N21S	0.004	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_AP_endonuc_1	pfam_Endo/exonuclease/phosphatase,pfam_Znf_GRF,superfamily_Endo/exonuclease/phosphatase,tigrfam_AP_endonuc_1	-	no_errors	APEX2	HGNC	ENSG00000169188				19	0	0	11	2	15.3846
KIAA2022	0	genome.wustl.edu	37	X	73963789	73963789	+	Silent	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	73963789	73963789	T	G	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	silent	c.603	p.S201	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				148	0	0	57	13	18.5714
CYSLTR1	0	genome.wustl.edu	37	X	77528938	77528938	+	Silent	SNP	A	A	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	77528938	77528938	A	G	SNP	CYSLTR1	ENST00000373304	human	ensembl	74_37	-1	known	silent	c.306	p.A102	0.996	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	CYSLTR1	HGNC	ENSG00000173198				52	0	0	22	15	40.5405
P2RY10	0	genome.wustl.edu	37	X	78216154	78216154	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	78216154	78216154	T	A	SNP	P2RY10	ENST00000171757	human	ensembl	74_37	+1	known	missense	c.137	p.I46N	0.996	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	P2RY10	HGNC	ENSG00000078589				127	0	0	94	7	6.93069
FAM46D	0	genome.wustl.edu	37	X	79698243	79698243	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	79698243	79698243	A	C	SNP	FAM46D	ENST00000308293	human	ensembl	74_37	+1	known	missense	c.205	p.S69R	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46D	HGNC	ENSG00000174016				99	0	0	56	14	20
CYLC1	0	genome.wustl.edu	37	X	83127964	83127964	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	83127964	83127964	A	C	SNP	CYLC1	ENST00000329312	human	ensembl	74_37	+1	known	missense	c.248	p.K83T	0.052	NULL	NULL	-	no_errors	CYLC1	HGNC	ENSG00000183035				34	0	0	18	6	25
PCDH11X	0	genome.wustl.edu	37	X	91133643	91133643	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	91133643	91133643	G	T	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.2404	p.D802Y	0.645	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				131	0	0	71	24	25.2632
NAP1L3	0	genome.wustl.edu	37	X	92927391	92927391	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	92927391	92927391	T	C	SNP	NAP1L3	ENST00000373079	human	ensembl	74_37	-1	known	missense	c.913	p.R305G	0.758	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L3	HGNC	ENSG00000186310				97	0	0	50	3	5.66038
TBL1X	0	genome.wustl.edu	37	X	9665416	9665416	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	9665416	9665416	T	G	SNP	TBL1X	ENST00000217964	human	ensembl	74_37	+1	known	missense	c.1061	p.I354R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849				149	0	0	60	68	53.125
RBM25	0	genome.wustl.edu	37	14	73572607	73572608	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	14	73572607	73572608	AG	-	DEL	RBM25	ENST00000261973	human	ensembl	74_37	+1	known	frame_shift_del	c.1195_1196	p.E402fs	0.998:1.000	NULL	pfam_PWI_dom,pfam_RRM_dom,superfamily_PWI_dom,smart_RRM_dom,smart_PWI_dom,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707				24	0	0	31	5	13.8889
B4GALT6	0	genome.wustl.edu	37	18	29218671	29218671	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	18	29218671	29218671	A	-	DEL	B4GALT6	ENST00000306851	human	ensembl	74_37	-1	known	frame_shift_del	c.524	p.F175fs	1.000	pfam_Galactosyl_T_C	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT6	HGNC	ENSG00000118276				69	0	0	74	15	16.8539
KLHL14	0	genome.wustl.edu	37	18	30275464	30275466	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	18	30275464	30275466	AAG	-	DEL	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	in_frame_del	c.1121_1119	p.F373in_frame_del	1.000:0.998:1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				65	0	0	36	4	10
KCNB1	0	genome.wustl.edu	37	20	47990175	47990175	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	20	47990175	47990175	T	-	DEL	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	frame_shift_del	c.1922	p.N641fs	1.000	pfam_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445				105	0	0	162	19	10.4972
IFT57	0	genome.wustl.edu	37	3	107910459	107910460	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	107910459	107910460	AT	-	DEL	IFT57	ENST00000264538	human	ensembl	74_37	-1	known	frame_shift_del	c.686_685	p.I229fs	1.000:1.000	pfam_Intra-flagellar_transport_57	pfam_Intra-flagellar_transport_57,superfamily_t-SNARE	-	no_errors	IFT57	HGNC	ENSG00000114446				48	0	0	24	19	44.186
COL6A5	0	genome.wustl.edu	37	3	130095304	130095306	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	130095304	130095306	AAG	-	DEL	COL6A5	ENST00000265379	human	ensembl	74_37	+1	known	in_frame_del	c.292_294	p.K99in_frame_del	1.000:1.000:0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752				34	0	0	18	2	10
TF	0	genome.wustl.edu	37	3	133476713	133476714	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	3	133476713	133476714	-	C	INS	TF	ENST00000402696	human	ensembl	74_37	+1	known	frame_shift_ins	c.971_972	p.R327fs	0.061:0.032	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	TF	HGNC	ENSG00000091513				93	0	0	51	13	20.3125
GRK4	0	genome.wustl.edu	37	4	3040278	3040279	+	RNA	INS	-	-	G			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	4	3040278	3040279	-	G	INS	GRK4	ENST00000504308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GRK4	HGNC	ENSG00000125388				41	0	0	28	5	15.1515
BRIX1	0	genome.wustl.edu	37	5	34925328	34925329	+	Splice_Site	INS	-	-	A			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	5	34925328	34925329	-	A	INS	BRIX1	ENST00000336767	human	ensembl	74_37	+1	known	splice_site_ins	c.793-3_793-2	e10-2	0.213:0.997	-	-	-	no_errors	BRIX1	HGNC	ENSG00000113460				12	0	0	16	2	11.1111
ZNF484	0	genome.wustl.edu	37	9	95609123	95609123	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	9	95609123	95609123	G	-	DEL	ZNF484	ENST00000395506	human	ensembl	74_37	-1	known	frame_shift_del	c.1952	p.S651fs	0.048	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081				115	0	0	41	25	37.8788
PCDH11X	0	genome.wustl.edu	37	X	91133642	91133643	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8485-01A-11D-2394-08	TCGA-BR-8485-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	402ccb96-9853-435a-8b18-f7331e3ef5d9	aeb401f8-7686-47d9-a690-d7fda664079a	X	91133642	91133643	-	C	INS	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	frame_shift_ins	c.2403_2404	p.D801fs	0.583:0.645	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				163	0	0	88	23	20.7207
