Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
LRRC39	0	genome.wustl.edu	37	1	100614640	100614640	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	100614640	100614640	G	A	SNP	LRRC39	ENST00000342895	human	ensembl	74_37	-1	known	silent	c.966	p.N322	0.028	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC39	HGNC	ENSG00000122477				68	0	0	38	22	36.6667
COL11A1	0	genome.wustl.edu	37	1	103387077	103387077	+	Silent	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	103387077	103387077	A	C	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	silent	c.3741	p.A1247	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				104	0	0	60	9	13.0435
AMY2B	0	genome.wustl.edu	37	1	104120455	104120455	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	104120455	104120455	A	G	SNP	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	missense	c.1334	p.N445S	1.000	pfam_A-amylase_b_C,smart_A-amylase_b_C	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038				350	0	0	126	90	41.6667
PGD	0	genome.wustl.edu	37	1	10460577	10460577	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	10460577	10460577	T	A	SNP	PGD	ENST00000270776	human	ensembl	74_37	+1	known	missense	c.212	p.I71N	1.000	pfam_6PGDH_NADP-bd,tigrfam_6PGDH_decarbox	pfam_6PGDH_C,pfam_6PGDH_NADP-bd,superfamily_6-PGluconate_DH_C-like,tigrfam_6PGDH_decarbox	-	no_errors	PGD	HGNC	ENSG00000142657				64	0	0	34	22	39.2857
ENSG00000272078	0	genome.wustl.edu	37	1	10709518	10709518	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	10709518	10709518	T	C	SNP	ENSG00000272078	ENST00000606802	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP4-734G22.3	Clone_based_vega_gene	ENSG00000272078				23	0	0	16	6	27.2727
CASZ1	0	genome.wustl.edu	37	1	10713537	10713537	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	10713537	10713537	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	silent	c.2577	p.P859	0.013	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				64	0	0	51	21	29.1667
PRMT6	0	genome.wustl.edu	37	1	107599615	107599615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	107599615	107599615	C	T	SNP	PRMT6	ENST00000370078	human	ensembl	74_37	+1	known	missense	c.278	p.T93I	1.000	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_mo5U34_MeTrfas-like,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_mo5U34_MeTrfas-like,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT6	HGNC	ENSG00000198890				66	0	0	39	22	36.0656
NTNG1	0	genome.wustl.edu	37	1	107867286	107867286	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	107867286	107867286	A	G	SNP	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	missense	c.629	p.Y210C	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				61	0	0	25	8	24.2424
CELSR2	0	genome.wustl.edu	37	1	109793004	109793004	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	109793004	109793004	T	C	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	silent	c.303	p.I101	0.519	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				132	0	0	58	48	45.283
CELSR2	0	genome.wustl.edu	37	1	109816666	109816666	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	109816666	109816666	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.8767	p.H2923Y	1.000	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				160	0	0	94	18	16.0714
SORT1	0	genome.wustl.edu	37	1	109859557	109859557	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	109859557	109859557	T	C	SNP	SORT1	ENST00000256637	human	ensembl	74_37	-1	known	missense	c.2165	p.K722R	0.926	smart_VPS10	pfam_BNR_rpt,smart_VPS10	-	no_errors	SORT1	HGNC	ENSG00000134243				139	0	0	65	24	26.9663
AMPD2	0	genome.wustl.edu	37	1	110168804	110168804	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	110168804	110168804	C	T	SNP	AMPD2	ENST00000256578	human	ensembl	74_37	+1	known	missense	c.538	p.R180W	0.998	pirsf_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD2	HGNC	ENSG00000116337				36	0	0	32	15	31.9149
AMPD2	0	genome.wustl.edu	37	1	110171361	110171361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	110171361	110171361	C	T	SNP	AMPD2	ENST00000256578	human	ensembl	74_37	+1	known	missense	c.1666	p.R556C	0.436	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD2	HGNC	ENSG00000116337				19	0	0	14	5	26.3158
MIR429	0	genome.wustl.edu	37	1	1104438	1104438	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	1104438	1104438	T	C	SNP	MIR429	ENST00000362106	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR429	HGNC	ENSG00000198976				48	0	0	39	6	13.3333
KCNC4	0	genome.wustl.edu	37	1	110754584	110754584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	110754584	110754584	G	A	SNP	KCNC4	ENST00000369787	human	ensembl	74_37	+1	known	missense	c.463	p.E155K	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_K_chnl_volt-dep_Kv3_ID,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.4,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC4	HGNC	ENSG00000116396				55	0	0	26	23	46.9388
KCNA2	0	genome.wustl.edu	37	1	111146992	111146992	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	111146992	111146992	C	T	SNP	KCNA2	ENST00000316361	human	ensembl	74_37	-1	known	missense	c.413	p.R138H	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.2,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3,prints_2pore_dom_K_chnl,prints_K_chnl_volt-dep_Kv1.1	-	no_errors	KCNA2	HGNC	ENSG00000177301				66	0	0	20	23	53.4884
KCNA3	0	genome.wustl.edu	37	1	111216110	111216110	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	111216110	111216110	G	C	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	missense	c.1322	p.T441S	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				66	0	0	53	28	34.5679
KCNA3	0	genome.wustl.edu	37	1	111217007	111217007	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	111217007	111217007	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	missense	c.425	p.P142L	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				144	0	0	149	8	5.09554
CD53	0	genome.wustl.edu	37	1	111437656	111437656	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	111437656	111437656	G	A	SNP	CD53	ENST00000271324	human	ensembl	74_37	+1	known	silent	c.402	p.A134	0.296	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD53	HGNC	ENSG00000143119				90	0	0	46	28	37.8378
CEPT1	0	genome.wustl.edu	37	1	111690562	111690562	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	111690562	111690562	G	A	SNP	CEPT1	ENST00000357172	human	ensembl	74_37	+1	known	missense	c.226	p.V76I	1.000	pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CEPT1	HGNC	ENSG00000134255				145	1	0.684932	70	61	46.5649
MTOR-AS1	0	genome.wustl.edu	37	1	11204901	11204901	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	11204901	11204901	G	A	SNP	MTOR-AS1	ENST00000420480	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.210	-	-	-	no_errors	MTOR-AS1	HGNC	ENSG00000225602				36	0	0	17	15	46.875
KCND3	0	genome.wustl.edu	37	1	112525093	112525093	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	112525093	112525093	G	A	SNP	KCND3	ENST00000315987	human	ensembl	74_37	-1	known	missense	c.256	p.R86W	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385				112	0	0	70	34	32.6923
MTOR	0	genome.wustl.edu	37	1	11291365	11291365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	11291365	11291365	G	A	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.2641	p.R881C	1.000	pfam_DUF3385_TOR,superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				354	0	0	196	99	33.5593
WNT2B	0	genome.wustl.edu	37	1	113051996	113051996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	113051996	113051996	C	T	SNP	WNT2B	ENST00000369684	human	ensembl	74_37	+1	known	missense	c.112	p.R38C	0.991	NULL	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245				44	0	0	36	4	10
WNT2B	0	genome.wustl.edu	37	1	113059031	113059031	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	113059031	113059031	G	T	SNP	WNT2B	ENST00000369684	human	ensembl	74_37	+1	known	missense	c.673	p.G225C	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245				77	0	0	29	18	38.2979
AP4B1	0	genome.wustl.edu	37	1	114442813	114442813	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	114442813	114442813	C	T	SNP	AP4B1	ENST00000256658	human	ensembl	74_37	-1	known	missense	c.827	p.R276Q	0.916	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP4B1	HGNC	ENSG00000134262				97	0	0	59	4	6.34921
NGF	0	genome.wustl.edu	37	1	115829340	115829340	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	115829340	115829340	A	G	SNP	NGF	ENST00000369512	human	ensembl	74_37	-1	known	missense	c.77	p.V26A	0.939	pirsf_Nerve_growth_factor-like,prints_Nerve_growth_factor_bsu_mml	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Nerve_growth_factor_bsu_mml,prints_Nerve_growth_factor_bsu,pfscan_Nerve_growth_factor-rel	-	no_errors	NGF	HGNC	ENSG00000134259				91	0	0	36	31	46.2687
NHLH2	0	genome.wustl.edu	37	1	116380755	116380755	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	116380755	116380755	G	A	SNP	NHLH2	ENST00000320238	human	ensembl	74_37	-1	known	missense	c.239	p.S80L	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NHLH2	HGNC	ENSG00000177551				17	0	0	24	10	29.4118
SDF4	0	genome.wustl.edu	37	1	1164062	1164062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	1164062	1164062	G	A	SNP	SDF4	ENST00000360001	human	ensembl	74_37	-1	known	missense	c.112	p.P38S	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	SDF4	HGNC	ENSG00000078808				67	0	0	75	6	7.40741
WDR3	0	genome.wustl.edu	37	1	118481113	118481113	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	118481113	118481113	A	G	SNP	WDR3	ENST00000349139	human	ensembl	74_37	+1	known	missense	c.511	p.T171A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR3	HGNC	ENSG00000065183				61	0	0	39	12	23.5294
MTHFR	0	genome.wustl.edu	37	1	11860308	11860308	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	11860308	11860308	G	A	SNP	MTHFR	ENST00000376583	human	ensembl	74_37	-1	known	nonsense	c.670	p.R224*	1.000	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000				191	0	0	113	69	37.9121
MTHFR	0	genome.wustl.edu	37	1	11861228	11861228	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	11861228	11861228	C	T	SNP	MTHFR	ENST00000376583	human	ensembl	74_37	-1	known	silent	c.588	p.A196	0.000	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000				190	0	0	92	75	44.9102
SPAG17	0	genome.wustl.edu	37	1	118693898	118693898	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	118693898	118693898	T	C	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.182	p.Q61R	0.998	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				55	0	0	32	21	39.6226
WARS2	0	genome.wustl.edu	37	1	119575743	119575743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	119575743	119575743	G	A	SNP	WARS2	ENST00000235521	human	ensembl	74_37	-1	known	missense	c.874	p.R292C	0.380	pfam_aa-tRNA-synth_Ic,tigrfam_Trp-tRNA-ligase	pfam_aa-tRNA-synth_Ic,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS2	HGNC	ENSG00000116874				149	0	0	42	25	37.3134
HSD3B1	0	genome.wustl.edu	37	1	120057096	120057096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	120057096	120057096	G	A	SNP	HSD3B1	ENST00000235547	human	ensembl	74_37	+1	known	missense	c.956	p.R319H	1.000	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_PKS_KR,pfam_NmrA	-	no_errors	HSD3B1	HGNC	ENSG00000203857				181	0	0	64	42	39.6226
SCNN1D	0	genome.wustl.edu	37	1	1222558	1222558	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	1222558	1222558	T	C	SNP	SCNN1D	ENST00000379116	human	ensembl	74_37	+1	known	missense	c.1189	p.Y397H	1.000	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1D	HGNC	ENSG00000162572				40	0	0	36	10	21.7391
VPS13D	0	genome.wustl.edu	37	1	12322018	12322018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	12322018	12322018	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.1475	p.R492Q	1.000	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				125	0	0	52	25	32.4675
PRAMEF10	0	genome.wustl.edu	37	1	12954967	12954967	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	12954967	12954967	G	T	SNP	PRAMEF10	ENST00000235347	human	ensembl	74_37	-1	known	silent	c.316	p.R106	0.000	NULL	NULL	-	no_errors	PRAMEF10	HGNC	ENSG00000187545				8	0	0	0	3	100
VWA1	0	genome.wustl.edu	37	1	1374664	1374664	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	1374664	1374664	T	C	SNP	VWA1	ENST00000476993	human	ensembl	74_37	+1	known	missense	c.835	p.Y279H	0.635	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	VWA1	HGNC	ENSG00000179403				12	0	0	9	10	52.6316
PRDM2	0	genome.wustl.edu	37	1	14105804	14105804	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	14105804	14105804	T	C	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.1514	p.V505A	0.999	smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_Znf_C2H2	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				43	0	0	26	15	36.5854
PRDM2	0	genome.wustl.edu	37	1	14108082	14108082	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	14108082	14108082	T	C	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	silent	c.3792	p.D1264	1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				176	0	0	136	31	18.5629
PDE4DIP	0	genome.wustl.edu	37	1	145075880	145075880	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	145075880	145075880	C	T	SNP	PDE4DIP	ENST00000528552	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				54	0	0	83	14	14.433
HFE2	0	genome.wustl.edu	37	1	145415499	145415499	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	145415499	145415499	G	A	SNP	HFE2	ENST00000336751	human	ensembl	74_37	+1	known	silent	c.318	p.A106	0.302	pfam_RGM_N	pfam_RGM_N,pfam_RGM_C	-	no_errors	HFE2	HGNC	ENSG00000168509				65	0	0	117	14	10.687
PRKAB2	0	genome.wustl.edu	37	1	146638125	146638125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	146638125	146638125	C	T	SNP	PRKAB2	ENST00000254101	human	ensembl	74_37	-1	known	missense	c.490	p.D164N	1.000	NULL	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB2	HGNC	ENSG00000131791				64	0	0	25	35	58.3333
LOC100293748	0	genome.wustl.edu	37	1	149262152	149262152	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	149262152	149262152	T	C	SNP	LOC100293748	ENST00000325963	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-403I13.4	Clone_based_vega_gene	ENSG00000223779				205	0	0	122	47	27.8107
HIST2H2BF	0	genome.wustl.edu	37	1	149783533	149783533	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	149783533	149783533	T	C	SNP	HIST2H2BF	ENST00000427880	human	ensembl	74_37	-1	known	missense	c.346	p.T116A	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BF	HGNC	ENSG00000203814				38	0	0	15	27	64.2857
HIST2H2BE	0	genome.wustl.edu	37	1	149857996	149857996	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	149857996	149857996	G	T	SNP	HIST2H2BE	ENST00000369155	human	ensembl	74_37	-1	known	silent	c.195	p.S65	0.959	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BE	HGNC	ENSG00000184678				296	0	0	168	171	50.4425
MTMR11	0	genome.wustl.edu	37	1	149905314	149905314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	149905314	149905314	C	T	SNP	MTMR11	ENST00000439741	human	ensembl	74_37	-1	known	missense	c.970	p.A324T	1.000	NULL	pfam_Myotubularin_assoc,pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR11	HGNC	ENSG00000014914				143	0	0	131	56	29.9465
C1orf54	0	genome.wustl.edu	37	1	150252086	150252086	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	150252086	150252086	G	A	SNP	C1orf54	ENST00000369099	human	ensembl	74_37	+1	known	silent	c.333	p.L111	0.966	NULL	NULL	-	no_errors	C1orf54	HGNC	ENSG00000118292				477	0	0	260	335	56.3025
ENSA	0	genome.wustl.edu	37	1	150599823	150599823	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	150599823	150599823	G	A	SNP	ENSA	ENST00000362052	human	ensembl	74_37	-1	known	silent	c.303	p.G101	0.000	NULL	NULL	-	no_errors	ENSA	HGNC	ENSG00000143420				328	0	0	266	99	27.1233
FAM63A	0	genome.wustl.edu	37	1	150973067	150973067	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	150973067	150973067	G	A	SNP	FAM63A	ENST00000361738	human	ensembl	74_37	-1	known	silent	c.745	p.L249	1.000	pfam_DUF544	pfam_DUF544	-	no_errors	FAM63A	HGNC	ENSG00000143409				110	0	0	59	78	56.9343
POGZ	0	genome.wustl.edu	37	1	151377849	151377849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	151377849	151377849	C	T	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.3662	p.R1221H	0.967	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				146	0	0	117	7	5.64516
RORC	0	genome.wustl.edu	37	1	151779906	151779906	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	151779906	151779906	G	A	SNP	RORC	ENST00000480719	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.122	-	-	-	no_errors	RORC	HGNC	ENSG00000143365				43	0	0	29	20	40.8163
RORC	0	genome.wustl.edu	37	1	151785618	151785618	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	151785618	151785618	G	T	SNP	RORC	ENST00000480719	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RORC	HGNC	ENSG00000143365				115	0	0	59	78	56.9343
RPTN	0	genome.wustl.edu	37	1	152127424	152127424	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152127424	152127424	G	A	SNP	RPTN	ENST00000316073	human	ensembl	74_37	-1	known	silent	c.2151	p.H717	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	RPTN	HGNC	ENSG00000215853				289	0	0	248	38	13.2867
FLG	0	genome.wustl.edu	37	1	152276823	152276823	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152276823	152276823	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.10539	p.A3513	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				410	0	0	355	145	29
FLG	0	genome.wustl.edu	37	1	152278662	152278662	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152278662	152278662	A	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.8700	p.H2900	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				446	1	0.223714	626	46	6.84524
FLG	0	genome.wustl.edu	37	1	152278749	152278749	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152278749	152278749	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.8613	p.S2871	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				481	0	0	733	85	10.3912
FLG	0	genome.wustl.edu	37	1	152278757	152278757	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152278757	152278757	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.8605	p.R2869G	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				535	1	0.186567	804	96	10.6667
FLG	0	genome.wustl.edu	37	1	152278762	152278762	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152278762	152278762	A	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.8600	p.I2867S	0.001	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				581	0	0	858	108	11.1801
FLG	0	genome.wustl.edu	37	1	152279050	152279050	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152279050	152279050	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.8312	p.Q2771R	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				721	0	0	972	154	13.6767
FLG	0	genome.wustl.edu	37	1	152279219	152279219	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152279219	152279219	A	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.8143	p.S2715P	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				71	0	0	70	15	17.6471
FLG	0	genome.wustl.edu	37	1	152280471	152280471	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152280471	152280471	C	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.6891	p.E2297D	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				511	1	0.195312	428	87	16.8932
FLG	0	genome.wustl.edu	37	1	152280492	152280492	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152280492	152280492	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.6870	p.A2290	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				539	0	0	426	83	16.3065
FLG	0	genome.wustl.edu	37	1	152280504	152280504	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152280504	152280504	G	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.6858	p.H2286Q	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				521	0	0	391	64	14.0659
FLG	0	genome.wustl.edu	37	1	152280573	152280573	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152280573	152280573	C	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.6789	p.A2263	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				420	2	0.473934	304	41	11.8841
FLG	0	genome.wustl.edu	37	1	152280587	152280587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152280587	152280587	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.6775	p.R2259W	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				383	0	0	316	50	13.6612
FLG	0	genome.wustl.edu	37	1	152280597	152280597	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152280597	152280597	A	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.6765	p.D2255	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				400	2	0.497512	324	62	16.0622
FLG	0	genome.wustl.edu	37	1	152280614	152280614	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152280614	152280614	C	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.6748	p.E2250Q	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				398	2	0.5	327	76	18.8586
FLG	0	genome.wustl.edu	37	1	152280635	152280635	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152280635	152280635	C	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.6727	p.V2243F	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				377	0	0	342	93	21.3793
FLG	0	genome.wustl.edu	37	1	152285753	152285753	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152285753	152285753	T	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.1609	p.N537H	0.001	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				615	0	0	334	512	60.5201
FLG	0	genome.wustl.edu	37	1	152286029	152286029	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152286029	152286029	G	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.1333	p.L445V	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				362	0	0	313	143	31.3596
CRNN	0	genome.wustl.edu	37	1	152382676	152382676	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152382676	152382676	G	A	SNP	CRNN	ENST00000271835	human	ensembl	74_37	-1	known	silent	c.882	p.H294	0.001	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CRNN	HGNC	ENSG00000143536				415	1	0.240385	402	75	15.7233
INTS3	0	genome.wustl.edu	37	1	153723713	153723713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	153723713	153723713	C	T	SNP	INTS3	ENST00000318967	human	ensembl	74_37	+1	known	missense	c.727	p.R243W	1.000	NULL	pfam_Int_cplx_su3	-	no_errors	INTS3	HGNC	ENSG00000143624				63	0	0	35	14	28.5714
INTS3	0	genome.wustl.edu	37	1	153745039	153745039	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	153745039	153745039	A	G	SNP	INTS3	ENST00000456435	human	ensembl	74_37	+1	known	missense	c.2326	p.T776A	0.003	NULL	pfam_Int_cplx_su3	-	no_errors	INTS3	HGNC	ENSG00000143624				34	0	0	28	14	33.3333
DENND4B	0	genome.wustl.edu	37	1	153913024	153913024	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	153913024	153913024	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	missense	c.1385	p.A462V	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				30	0	0	29	10	25.641
AQP10	0	genome.wustl.edu	37	1	154296793	154296793	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	154296793	154296793	C	T	SNP	AQP10	ENST00000324978	human	ensembl	74_37	+1	known	missense	c.743	p.A248V	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_10,prints_Aquaporin_3,tigrfam_MIP	-	no_errors	AQP10	HGNC	ENSG00000143595				79	0	0	61	27	30.6818
SHC1	0	genome.wustl.edu	37	1	154942648	154942648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	154942648	154942648	C	T	SNP	SHC1	ENST00000368445	human	ensembl	74_37	-1	known	missense	c.355	p.G119R	1.000	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691				88	0	0	65	25	27.7778
FLAD1	0	genome.wustl.edu	37	1	154960618	154960618	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	154960618	154960618	G	A	SNP	FLAD1	ENST00000405236	human	ensembl	74_37	+1	known	missense	c.113	p.R38Q	1.000	pfam_Mopterin-bd_dom,superfamily_Mopterin-bd_dom,smart_Mopterin-bd_dom	pfam_Mopterin-bd_dom,superfamily_Mopterin-bd_dom,smart_Mopterin-bd_dom	-	no_errors	FLAD1	HGNC	ENSG00000160688				206	0	0	157	77	32.906
DCST2	0	genome.wustl.edu	37	1	155006032	155006032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155006032	155006032	C	T	SNP	DCST2	ENST00000368424	human	ensembl	74_37	-1	known	missense	c.146	p.G49D	0.978	NULL	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354				103	0	0	128	13	9.21986
TRIM46	0	genome.wustl.edu	37	1	155150709	155150709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155150709	155150709	G	A	SNP	TRIM46	ENST00000334634	human	ensembl	74_37	+1	known	missense	c.1141	p.A381T	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462				57	0	0	35	39	52.7027
GBA	0	genome.wustl.edu	37	1	155209421	155209421	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155209421	155209421	T	C	SNP	GBA	ENST00000327247	human	ensembl	74_37	-1	known	missense	c.440	p.Y147C	1.000	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_30	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_30	-	no_errors	GBA	HGNC	ENSG00000177628				50	0	0	40	16	28.5714
FAM189B	0	genome.wustl.edu	37	1	155221590	155221590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155221590	155221590	G	A	SNP	FAM189B	ENST00000361361	human	ensembl	74_37	-1	known	missense	c.728	p.P243L	0.996	NULL	pfam_CD20-like	-	no_errors	FAM189B	HGNC	ENSG00000160767				23	0	0	18	9	33.3333
CLK2	0	genome.wustl.edu	37	1	155233764	155233764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155233764	155233764	G	A	SNP	CLK2	ENST00000368361	human	ensembl	74_37	-1	known	missense	c.1294	p.R432C	0.877	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK2	HGNC	ENSG00000176444				200	0	0	143	52	26.6667
CLK2	0	genome.wustl.edu	37	1	155234456	155234456	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155234456	155234456	C	T	SNP	CLK2	ENST00000368361	human	ensembl	74_37	-1	known	missense	c.1043	p.R348Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK2	HGNC	ENSG00000176444				100	0	0	107	9	7.75862
RUSC1	0	genome.wustl.edu	37	1	155294946	155294946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155294946	155294946	G	A	SNP	RUSC1	ENST00000368352	human	ensembl	74_37	+1	known	missense	c.1510	p.A504T	1.000	NULL	pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC1	HGNC	ENSG00000160753				172	0	0	151	58	27.7512
ASH1L	0	genome.wustl.edu	37	1	155448745	155448745	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155448745	155448745	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	nonsense	c.3916	p.R1306*	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				123	0	0	52	63	54.7826
ASH1L	0	genome.wustl.edu	37	1	155491157	155491157	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155491157	155491157	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.154	p.R52W	0.002	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				417	0	0	363	25	6.4433
RXFP4	0	genome.wustl.edu	37	1	155911941	155911941	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155911941	155911941	G	A	SNP	RXFP4	ENST00000368318	human	ensembl	74_37	+1	known	silent	c.441	p.A147	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	RXFP4	HGNC	ENSG00000173080				94	0	0	37	53	58.8889
UBQLN4	0	genome.wustl.edu	37	1	156018332	156018332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156018332	156018332	G	A	SNP	UBQLN4	ENST00000368309	human	ensembl	74_37	-1	known	missense	c.860	p.T287M	0.999	NULL	pfam_Ubiquitin_dom,pfam_UBA/Ts_N,pfam_Rad60/SUMO_like,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN4	HGNC	ENSG00000160803				44	0	0	36	45	55.5556
RAB25	0	genome.wustl.edu	37	1	156035832	156035832	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156035832	156035832	C	T	SNP	RAB25	ENST00000361084	human	ensembl	74_37	+1	known	silent	c.174	p.T58	0.050	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB25	HGNC	ENSG00000132698				75	0	0	70	31	30.6931
SEMA4A	0	genome.wustl.edu	37	1	156124510	156124510	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156124510	156124510	T	C	SNP	SEMA4A	ENST00000355014	human	ensembl	74_37	+1	known	splice_site	c.139+2	e1+2	0.974	-	-	-	no_errors	SEMA4A	HGNC	ENSG00000196189				8	0	0	7	9	56.25
SEMA4A	0	genome.wustl.edu	37	1	156130338	156130338	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156130338	156130338	C	T	SNP	SEMA4A	ENST00000355014	human	ensembl	74_37	+1	known	missense	c.673	p.R225C	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4A	HGNC	ENSG00000196189				46	0	0	30	27	47.3684
PAQR6	0	genome.wustl.edu	37	1	156214515	156214515	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156214515	156214515	C	A	SNP	PAQR6	ENST00000335852	human	ensembl	74_37	-1	known	missense	c.479	p.G160V	0.028	NULL	pfam_HlyIII-related	-	no_errors	PAQR6	HGNC	ENSG00000160781				60	0	0	60	5	7.69231
PAQR6	0	genome.wustl.edu	37	1	156216522	156216522	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156216522	156216522	T	C	SNP	PAQR6	ENST00000292291	human	ensembl	74_37	-1	known	missense	c.1	p.M1V	1.000	NULL	pfam_HlyIII-related	-	no_errors	PAQR6	HGNC	ENSG00000160781				38	0	0	83	15	15.3061
C1orf61	0	genome.wustl.edu	37	1	156386536	156386536	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156386536	156386536	C	A	SNP	C1orf61	ENST00000462458	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	C1orf61	HGNC	ENSG00000125462				166	0	0	74	91	55.1515
PRCC	0	genome.wustl.edu	37	1	156737935	156737935	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156737935	156737935	T	C	SNP	PRCC	ENST00000271526	human	ensembl	74_37	+1	known	silent	c.372	p.P124	0.004	NULL	pfam_PRCC	-	no_errors	PRCC	HGNC	ENSG00000143294				9	0	0	7	3	30
PRCC	0	genome.wustl.edu	37	1	156737938	156737938	+	Silent	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156737938	156737938	A	C	SNP	PRCC	ENST00000271526	human	ensembl	74_37	+1	known	silent	c.375	p.P125	0.001	NULL	pfam_PRCC	-	no_errors	PRCC	HGNC	ENSG00000143294				8	0	0	7	3	30
INSRR	0	genome.wustl.edu	37	1	156811288	156811288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156811288	156811288	G	A	SNP	INSRR	ENST00000368195	human	ensembl	74_37	-1	known	missense	c.3560	p.T1187I	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSRR	HGNC	ENSG00000027644				91	0	0	100	24	19.3548
ETV3L	0	genome.wustl.edu	37	1	157068643	157068643	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	157068643	157068643	C	A	SNP	ETV3L	ENST00000454449	human	ensembl	74_37	-1	known	missense	c.341	p.R114M	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV3L	HGNC	ENSG00000253831				156	0	0	136	54	28.4211
FCRL2	0	genome.wustl.edu	37	1	157738437	157738437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	157738437	157738437	G	A	SNP	FCRL2	ENST00000361516	human	ensembl	74_37	-1	known	missense	c.650	p.T217I	0.001	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL2	HGNC	ENSG00000132704				191	0	0	146	53	26.6332
OR10K1	0	genome.wustl.edu	37	1	158435493	158435493	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	158435493	158435493	A	G	SNP	OR10K1	ENST00000289451	human	ensembl	74_37	+1	known	missense	c.142	p.T48A	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285				180	0	0	131	37	22.0238
OR10Z1	0	genome.wustl.edu	37	1	158576274	158576274	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	158576274	158576274	G	T	SNP	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	missense	c.46	p.G16C	0.988	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				119	0	0	81	30	27.027
DNAJC16	0	genome.wustl.edu	37	1	15863138	15863138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	15863138	15863138	C	T	SNP	DNAJC16	ENST00000375847	human	ensembl	74_37	+1	known	missense	c.403	p.R135W	1.000	NULL	pfam_DnaJ_domain,pfam_Thioredoxin_domain,superfamily_DnaJ_domain,superfamily_Thioredoxin-like_fold,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC16	HGNC	ENSG00000116138				84	0	0	22	17	43.5897
OR6K6	0	genome.wustl.edu	37	1	158724749	158724749	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	158724749	158724749	G	A	SNP	OR6K6	ENST00000368144	human	ensembl	74_37	+1	known	silent	c.144	p.A48	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433				156	1	0.636943	112	41	26.7974
MNDA	0	genome.wustl.edu	37	1	158813179	158813179	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	158813179	158813179	G	A	SNP	MNDA	ENST00000368141	human	ensembl	74_37	+1	known	missense	c.376	p.A126T	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563				39	0	0	8	13	61.9048
AGMAT	0	genome.wustl.edu	37	1	15909692	15909692	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	15909692	15909692	G	T	SNP	AGMAT	ENST00000375826	human	ensembl	74_37	-1	known	silent	c.471	p.T157	0.996	pfam_Ureohydrolase,tigrfam_Agmatinase-rel	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Agmatinase-rel	-	no_errors	AGMAT	HGNC	ENSG00000116771				36	0	0	18	9	33.3333
CRP	0	genome.wustl.edu	37	1	159683773	159683773	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	159683773	159683773	C	T	SNP	CRP	ENST00000255030	human	ensembl	74_37	-1	known	missense	c.217	p.A73T	0.343	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	CRP	HGNC	ENSG00000132693				81	0	0	86	16	15.6863
ATP1A4	0	genome.wustl.edu	37	1	160151795	160151795	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	160151795	160151795	C	T	SNP	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	silent	c.2943	p.D981	0.111	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				187	0	0	122	42	25.6098
PLEKHM2	0	genome.wustl.edu	37	1	16054066	16054066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16054066	16054066	C	T	SNP	PLEKHM2	ENST00000375799	human	ensembl	74_37	+1	known	missense	c.1499	p.A500V	1.000	NULL	pfam_Run,pfam_Pleckstrin_homology,smart_Run,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Run	-	no_errors	PLEKHM2	HGNC	ENSG00000116786				9	0	0	6	5	45.4545
USF1	0	genome.wustl.edu	37	1	161011147	161011147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	161011147	161011147	C	T	SNP	USF1	ENST00000368020	human	ensembl	74_37	-1	known	missense	c.527	p.R176H	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	USF1	HGNC	ENSG00000158773				44	0	0	43	21	32.8125
ARHGAP30	0	genome.wustl.edu	37	1	161017527	161017527	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	161017527	161017527	G	T	SNP	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	missense	c.3284	p.P1095H	0.345	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				108	0	0	75	24	24.2424
PVRL4	0	genome.wustl.edu	37	1	161043525	161043525	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	161043525	161043525	C	T	SNP	PVRL4	ENST00000368012	human	ensembl	74_37	-1	known	silent	c.1218	p.T406	0.720	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PVRL4	HGNC	ENSG00000143217				117	0	0	143	42	22.7027
DUSP12	0	genome.wustl.edu	37	1	161722969	161722969	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	161722969	161722969	G	A	SNP	DUSP12	ENST00000367943	human	ensembl	74_37	+1	known	missense	c.779	p.G260E	0.327	pirsf_DUSP12	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_DUSP12,pfscan_Znf_C2H2,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP12	HGNC	ENSG00000081721				131	0	0	100	22	18.0328
SPEN	0	genome.wustl.edu	37	1	16248846	16248846	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16248846	16248846	T	C	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	splice_site	c.1850+2	e10+2	0.993	-	-	-	no_errors	SPEN	HGNC	ENSG00000065526				53	0	0	19	16	45.7143
SPEN	0	genome.wustl.edu	37	1	16259759	16259759	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16259759	16259759	C	T	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	nonsense	c.7024	p.R2342*	0.979	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				131	1	0.757576	88	21	19.2661
SPEN	0	genome.wustl.edu	37	1	16262482	16262482	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16262482	16262482	C	T	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	silent	c.9747	p.P3249	0.005	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				28	0	0	25	9	26.4706
SPEN	0	genome.wustl.edu	37	1	16264140	16264140	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16264140	16264140	G	T	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.10509	p.K3503N	1.000	superfamily_SPOC_like_C_dom,pfscan_SPOC_met	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				163	0	0	85	41	32.5397
HSD17B7	0	genome.wustl.edu	37	1	162782140	162782140	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	162782140	162782140	T	C	SNP	HSD17B7	ENST00000254521	human	ensembl	74_37	+1	known	missense	c.956	p.L319P	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD17B7	HGNC	ENSG00000132196				37	0	0	5	14	73.6842
HSPB7	0	genome.wustl.edu	37	1	16343700	16343700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16343700	16343700	G	A	SNP	HSPB7	ENST00000487046	human	ensembl	74_37	-1	known	missense	c.217	p.R73C	0.998	superfamily_HSP20-like_chaperone	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	HSPB7	HGNC	ENSG00000173641				167	0	0	87	58	40
HSPB7	0	genome.wustl.edu	37	1	16344393	16344393	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16344393	16344393	G	T	SNP	HSPB7	ENST00000487046	human	ensembl	74_37	-1	known	silent	c.66	p.S22	0.343	NULL	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	HSPB7	HGNC	ENSG00000173641				54	0	0	28	13	31.7073
EPHA2	0	genome.wustl.edu	37	1	16459687	16459687	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16459687	16459687	C	T	SNP	EPHA2	ENST00000358432	human	ensembl	74_37	-1	known	missense	c.2041	p.V681I	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627				58	0	0	35	26	42.623
LRRC52	0	genome.wustl.edu	37	1	165513717	165513717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	165513717	165513717	G	A	SNP	LRRC52	ENST00000294818	human	ensembl	74_37	+1	known	missense	c.184	p.E62K	0.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC52	HGNC	ENSG00000162763				222	0	0	72	116	61.7021
RSG1	0	genome.wustl.edu	37	1	16558726	16558726	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16558726	16558726	C	T	SNP	RSG1	ENST00000375599	human	ensembl	74_37	-1	known	silent	c.594	p.E198	0.881	pfam_Small_GTPase,superfamily_P-loop_NTPase	pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,prints_Small_GTPase	-	no_errors	RSG1	HGNC	ENSG00000132881				32	0	0	20	14	41.1765
FAM78B	0	genome.wustl.edu	37	1	166039535	166039535	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	166039535	166039535	C	A	SNP	FAM78B	ENST00000338353	human	ensembl	74_37	-1	known	missense	c.729	p.Q243H	1.000	NULL	NULL	-	no_errors	FAM78B	HGNC	ENSG00000188859				147	0	0	165	9	5.17241
GPA33	0	genome.wustl.edu	37	1	167024302	167024302	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	167024302	167024302	A	G	SNP	GPA33	ENST00000367868	human	ensembl	74_37	-1	known	silent	c.738	p.V246	0.000	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	GPA33	HGNC	ENSG00000143167				95	0	0	41	57	58.1633
SZRD1	0	genome.wustl.edu	37	1	16719757	16719757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16719757	16719757	G	A	SNP	SZRD1	ENST00000375590	human	ensembl	74_37	+1	known	missense	c.76	p.V26M	1.000	NULL	NULL	-	no_errors	SZRD1	HGNC	ENSG00000055070				176	0	0	174	15	7.93651
RCSD1	0	genome.wustl.edu	37	1	167666580	167666580	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	167666580	167666580	G	T	SNP	RCSD1	ENST00000367854	human	ensembl	74_37	+1	known	missense	c.719	p.R240M	0.652	pfam_RCSD	pfam_RCSD	-	no_errors	RCSD1	HGNC	ENSG00000198771				36	0	0	58	9	13.4328
RCSD1	0	genome.wustl.edu	37	1	167666619	167666619	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	167666619	167666619	G	T	SNP	RCSD1	ENST00000367854	human	ensembl	74_37	+1	known	missense	c.758	p.R253M	0.001	pfam_RCSD	pfam_RCSD	-	no_errors	RCSD1	HGNC	ENSG00000198771				30	0	0	26	17	39.5349
DCAF6	0	genome.wustl.edu	37	1	167971724	167971724	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	167971724	167971724	G	A	SNP	DCAF6	ENST00000367840	human	ensembl	74_37	+1	known	missense	c.908	p.R303Q	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164				73	0	0	39	48	55.1724
CROCCP3	0	genome.wustl.edu	37	1	16809859	16809859	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16809859	16809859	G	A	SNP	CROCCP3	ENST00000263511	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CROCCP3	HGNC	ENSG00000080947				18	0	0	23	16	41.0256
CCDC181	0	genome.wustl.edu	37	1	169391108	169391108	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	169391108	169391108	T	C	SNP	CCDC181	ENST00000367806	human	ensembl	74_37	-1	known	silent	c.561	p.S187	0.993	NULL	NULL	-	no_errors	CCDC181	HGNC	ENSG00000117477				113	0	0	56	25	30.8642
F5	0	genome.wustl.edu	37	1	169510286	169510286	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	169510286	169510286	G	T	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	missense	c.4042	p.L1348I	0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				344	0	0	316	73	18.7661
C1orf112	0	genome.wustl.edu	37	1	169790873	169790873	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	169790873	169790873	T	G	SNP	C1orf112	ENST00000286031	human	ensembl	74_37	+1	known	missense	c.756	p.F252L	1.000	NULL	NULL	-	no_errors	C1orf112	HGNC	ENSG00000000460				63	0	0	30	7	18.9189
GORAB	0	genome.wustl.edu	37	1	170508692	170508692	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	170508692	170508692	A	G	SNP	GORAB	ENST00000367763	human	ensembl	74_37	+1	known	missense	c.478	p.K160E	0.999	NULL	pfam_Transcript_act	-	no_errors	GORAB	HGNC	ENSG00000120370				72	0	0	28	44	61.1111
FMO2	0	genome.wustl.edu	37	1	171173089	171173089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	171173089	171173089	G	A	SNP	FMO2	ENST00000209929	human	ensembl	74_37	+1	known	missense	c.713	p.R238Q	0.994	pfam_Flavin_mOase-like	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963				70	0	0	49	11	18.3333
METTL13	0	genome.wustl.edu	37	1	171752950	171752950	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	171752950	171752950	T	C	SNP	METTL13	ENST00000361735	human	ensembl	74_37	+1	known	missense	c.224	p.V75A	1.000	pfam_Methyltransf_11	pfam_Methyltransf_11,pfam_Spermidine/spermine_synthase	-	no_errors	METTL13	HGNC	ENSG00000010165				102	0	0	76	28	26.9231
GNB1	0	genome.wustl.edu	37	1	1721996	1721996	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	1721996	1721996	C	T	SNP	GNB1	ENST00000378609	human	ensembl	74_37	-1	known	silent	c.537	p.T179	0.124	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB1	HGNC	ENSG00000078369				46	0	0	25	16	39.0244
CROCC	0	genome.wustl.edu	37	1	17250898	17250898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	17250898	17250898	G	A	SNP	CROCC	ENST00000375541	human	ensembl	74_37	+1	known	missense	c.275	p.R92H	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453				40	0	0	23	11	32.3529
TNN	0	genome.wustl.edu	37	1	175046823	175046823	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	175046823	175046823	T	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	missense	c.269	p.I90N	1.000	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				68	0	0	66	22	25
TNN	0	genome.wustl.edu	37	1	175048797	175048797	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	175048797	175048797	C	T	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	silent	c.738	p.G246	0.999	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				23	0	0	21	19	47.5
TNN	0	genome.wustl.edu	37	1	175116131	175116131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	175116131	175116131	G	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	missense	c.3824	p.R1275H	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				64	0	0	42	15	26.3158
TNR	0	genome.wustl.edu	37	1	175334184	175334184	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	175334184	175334184	G	A	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.2549	p.T850I	0.318	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				130	0	0	79	32	28.8288
TNR	0	genome.wustl.edu	37	1	175360460	175360460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	175360460	175360460	C	T	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.1471	p.A491T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				91	0	0	36	54	60
PAPPA2	0	genome.wustl.edu	37	1	176738824	176738824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	176738824	176738824	C	T	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.4405	p.P1469S	0.230	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				127	0	0	146	19	11.5152
ASTN1	0	genome.wustl.edu	37	1	177001852	177001852	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	177001852	177001852	T	C	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	missense	c.605	p.H202R	1.000	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				91	0	0	122	7	5.42636
RASAL2	0	genome.wustl.edu	37	1	178425926	178425926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	178425926	178425926	C	T	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.2282	p.T761M	1.000	pfam_DUF3498,superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391				277	0	0	235	68	22.4422
ABL2	0	genome.wustl.edu	37	1	179077212	179077212	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	179077212	179077212	C	A	SNP	ABL2	ENST00000502732	human	ensembl	74_37	-1	known	missense	c.3190	p.G1064C	1.000	pfam_F-actin_binding,smart_F-actin_binding	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac-type,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322				84	0	0	81	26	24.2991
ABL2	0	genome.wustl.edu	37	1	179089336	179089336	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	179089336	179089336	A	G	SNP	ABL2	ENST00000502732	human	ensembl	74_37	-1	known	missense	c.1034	p.V345A	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac-type,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322				146	0	0	48	90	65.2174
ARHGEF10L	0	genome.wustl.edu	37	1	17949635	17949635	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	17949635	17949635	T	C	SNP	ARHGEF10L	ENST00000361221	human	ensembl	74_37	+1	known	missense	c.1165	p.S389P	0.012	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964				104	0	0	50	21	29.5775
ARHGEF10L	0	genome.wustl.edu	37	1	18014076	18014076	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	18014076	18014076	C	T	SNP	ARHGEF10L	ENST00000361221	human	ensembl	74_37	+1	known	silent	c.3018	p.F1006	0.982	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964				71	0	0	57	4	6.55738
ARHGEF10L	0	genome.wustl.edu	37	1	18014129	18014129	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	18014129	18014129	G	C	SNP	ARHGEF10L	ENST00000361221	human	ensembl	74_37	+1	known	missense	c.3071	p.S1024T	1.000	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964				78	0	0	34	34	50
CACNA1E	0	genome.wustl.edu	37	1	181702772	181702772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	181702772	181702772	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.3148	p.E1050K	0.994	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				34	0	0	22	9	29.0323
CACNA1E	0	genome.wustl.edu	37	1	181754546	181754546	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	181754546	181754546	G	T	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	nonsense	c.5671	p.E1891*	1.000	pfam_VDCC_a1su_IQ	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				17	0	0	24	18	42.8571
LAMC1	0	genome.wustl.edu	37	1	182993180	182993180	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	182993180	182993180	A	G	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	missense	c.329	p.N110S	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				36	0	0	30	7	18.9189
SMG7	0	genome.wustl.edu	37	1	183510196	183510196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	183510196	183510196	G	A	SNP	SMG7	ENST00000507469	human	ensembl	74_37	+1	known	missense	c.1373	p.R458H	1.000	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698				170	0	0	140	70	33.3333
SWT1	0	genome.wustl.edu	37	1	185151180	185151180	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	185151180	185151180	T	C	SNP	SWT1	ENST00000367500	human	ensembl	74_37	+1	known	missense	c.1129	p.S377P	0.813	NULL	smart_PIN_dom	-	no_errors	SWT1	HGNC	ENSG00000116668				81	0	0	83	5	5.68182
HMCN1	0	genome.wustl.edu	37	1	186056769	186056769	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	186056769	186056769	A	G	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.9355	p.K3119E	0.903	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				125	0	0	97	9	8.49057
HMCN1	0	genome.wustl.edu	37	1	186060030	186060030	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	186060030	186060030	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.9868	p.G3290C	0.033	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				78	0	0	45	11	19.6429
PRG4	0	genome.wustl.edu	37	1	186276815	186276815	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	186276815	186276815	A	G	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	missense	c.1964	p.E655G	0.001	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				76	0	0	46	88	65.6716
BRINP3	0	genome.wustl.edu	37	1	190129864	190129864	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	190129864	190129864	A	T	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.1118	p.V373E	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				127	0	0	33	51	60.7143
BRINP3	0	genome.wustl.edu	37	1	190129921	190129921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	190129921	190129921	C	T	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.1061	p.R354H	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				145	0	0	87	31	26.2712
PAX7	0	genome.wustl.edu	37	1	19027170	19027170	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	19027170	19027170	C	T	SNP	PAX7	ENST00000375375	human	ensembl	74_37	+1	known	silent	c.810	p.A270	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Paired_dom,pfam_Homeobox_dom,pfam_Pax7,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX7	HGNC	ENSG00000009709				94	0	0	44	40	47.619
TAS1R2	0	genome.wustl.edu	37	1	19181075	19181075	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	19181075	19181075	C	T	SNP	TAS1R2	ENST00000375371	human	ensembl	74_37	-1	novel	missense	c.889	p.V297M	0.944	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002				43	0	0	60	5	7.69231
AKR7A3	0	genome.wustl.edu	37	1	19611268	19611268	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	19611268	19611268	T	C	SNP	AKR7A3	ENST00000361640	human	ensembl	74_37	-1	known	missense	c.616	p.T206A	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	-	no_errors	AKR7A3	HGNC	ENSG00000162482				111	0	0	67	36	34.9515
GABRD	0	genome.wustl.edu	37	1	1961127	1961127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	1961127	1961127	G	A	SNP	GABRD	ENST00000378585	human	ensembl	74_37	+1	known	missense	c.985	p.A329T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAd_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRD	HGNC	ENSG00000187730				78	0	0	60	11	15.493
PQLC2	0	genome.wustl.edu	37	1	19652784	19652784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	19652784	19652784	C	T	SNP	PQLC2	ENST00000375153	human	ensembl	74_37	+1	known	missense	c.428	p.A143V	0.000	NULL	superfamily_MFS_dom_general_subst_transpt,smart_CTNS	-	no_errors	PQLC2	HGNC	ENSG00000040487				44	0	0	31	15	32.6087
ASPM	0	genome.wustl.edu	37	1	197069676	197069676	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	197069676	197069676	T	C	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.8705	p.Q2902R	0.924	superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				54	0	0	19	36	65.4545
DENND1B	0	genome.wustl.edu	37	1	197611862	197611862	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	197611862	197611862	A	G	SNP	DENND1B	ENST00000367396	human	ensembl	74_37	-1	known	silent	c.651	p.I217	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1B	HGNC	ENSG00000213047				37	0	0	11	20	64.5161
HTR6	0	genome.wustl.edu	37	1	20005157	20005157	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	20005157	20005157	G	A	SNP	HTR6	ENST00000289753	human	ensembl	74_37	+1	known	missense	c.812	p.G271D	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT6_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HTR6	HGNC	ENSG00000158748				52	0	0	31	21	40.3846
HTR6	0	genome.wustl.edu	37	1	20005700	20005700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	20005700	20005700	G	A	SNP	HTR6	ENST00000289753	human	ensembl	74_37	+1	known	missense	c.1162	p.G388S	0.825	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT6_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HTR6	HGNC	ENSG00000158748				12	0	0	11	5	31.25
KIF14	0	genome.wustl.edu	37	1	200572373	200572373	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	200572373	200572373	G	A	SNP	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	missense	c.1960	p.R654C	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				81	0	0	69	16	18.8235
CAMSAP2	0	genome.wustl.edu	37	1	200818775	200818775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	200818775	200818775	C	T	SNP	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	missense	c.2911	p.P971S	1.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				188	0	0	141	43	23.3696
CACNA1S	0	genome.wustl.edu	37	1	201047074	201047074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	201047074	201047074	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	missense	c.1552	p.A518T	0.659	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				78	0	0	66	4	5.71429
PKP1	0	genome.wustl.edu	37	1	201282596	201282596	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	201282596	201282596	G	A	SNP	PKP1	ENST00000263946	human	ensembl	74_37	+1	known	silent	c.609	p.P203	0.141	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277				22	0	0	23	22	48.8889
NAV1	0	genome.wustl.edu	37	1	201618347	201618347	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	201618347	201618347	C	T	SNP	NAV1	ENST00000367296	human	ensembl	74_37	+1	known	missense	c.551	p.P184L	1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369				26	0	0	40	8	16.6667
RNPEP	0	genome.wustl.edu	37	1	201970518	201970518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	201970518	201970518	G	A	SNP	RNPEP	ENST00000295640	human	ensembl	74_37	+1	known	missense	c.1219	p.D407N	0.931	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEP	HGNC	ENSG00000176393				59	0	0	50	13	20.6349
SYT2	0	genome.wustl.edu	37	1	202569569	202569569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	202569569	202569569	G	A	SNP	SYT2	ENST00000367267	human	ensembl	74_37	-1	known	missense	c.835	p.R279C	1.000	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT2	HGNC	ENSG00000143858				108	0	0	59	75	55.9701
SYT2	0	genome.wustl.edu	37	1	202572238	202572238	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	202572238	202572238	G	A	SNP	SYT2	ENST00000367267	human	ensembl	74_37	-1	known	silent	c.354	p.D118	0.050	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT2	HGNC	ENSG00000143858				105	0	0	75	22	22.6804
MYOG	0	genome.wustl.edu	37	1	203055031	203055031	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	203055031	203055031	T	C	SNP	MYOG	ENST00000241651	human	ensembl	74_37	-1	known	missense	c.59	p.E20G	0.996	pfam_Basic,smart_Basic	pfam_Basic,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYOG	HGNC	ENSG00000122180				66	0	0	83	8	8.79121
MYBPH	0	genome.wustl.edu	37	1	203143632	203143632	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	203143632	203143632	A	G	SNP	MYBPH	ENST00000255416	human	ensembl	74_37	-1	known	missense	c.434	p.V145A	0.989	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPH	HGNC	ENSG00000133055				48	0	0	41	23	35.9375
CHIT1	0	genome.wustl.edu	37	1	203192702	203192702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	203192702	203192702	C	T	SNP	CHIT1	ENST00000367229	human	ensembl	74_37	-1	known	missense	c.401	p.G134D	1.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIT1	HGNC	ENSG00000133063				129	0	0	70	100	58.8235
OPTC	0	genome.wustl.edu	37	1	203467949	203467949	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	203467949	203467949	G	A	SNP	OPTC	ENST00000367222	human	ensembl	74_37	+1	known	missense	c.511	p.E171K	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OPTC	HGNC	ENSG00000188770				61	0	0	75	37	33.0357
LRRN2	0	genome.wustl.edu	37	1	204588366	204588366	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	204588366	204588366	A	G	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.755	p.V252A	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				91	0	0	74	30	28.8462
LRRN2	0	genome.wustl.edu	37	1	204589060	204589060	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	204589060	204589060	G	A	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.61	p.P21S	0.980	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				33	0	0	29	15	34.0909
NFASC	0	genome.wustl.edu	37	1	204985509	204985509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	204985509	204985509	G	A	SNP	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	missense	c.3886	p.D1296N	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				214	0	0	105	135	56.25
UBXN10	0	genome.wustl.edu	37	1	20517261	20517261	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	20517261	20517261	C	A	SNP	UBXN10	ENST00000375099	human	ensembl	74_37	+1	known	silent	c.207	p.A69	0.024	NULL	pfam_UBX,smart_UBX,pfscan_UBX	-	no_errors	UBXN10	HGNC	ENSG00000162543				140	0	0	125	10	7.40741
UBXN10	0	genome.wustl.edu	37	1	20517393	20517393	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	20517393	20517393	G	C	SNP	UBXN10	ENST00000375099	human	ensembl	74_37	+1	known	missense	c.339	p.K113N	0.925	NULL	pfam_UBX,smart_UBX,pfscan_UBX	-	no_errors	UBXN10	HGNC	ENSG00000162543				115	0	0	87	15	14.7059
CDK18	0	genome.wustl.edu	37	1	205496979	205496979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	205496979	205496979	C	T	SNP	CDK18	ENST00000506784	human	ensembl	74_37	+1	known	missense	c.877	p.H293Y	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK18	HGNC	ENSG00000117266				171	0	0	141	33	18.9655
C1orf186	0	genome.wustl.edu	37	1	206241649	206241649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	206241649	206241649	G	A	SNP	C1orf186	ENST00000331555	human	ensembl	74_37	-1	novel	missense	c.140	p.A47V	0.000	NULL	NULL	-	no_errors	C1orf186	HGNC	ENSG00000196533				71	0	0	68	21	23.5955
EIF2D	0	genome.wustl.edu	37	1	206784635	206784635	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	206784635	206784635	A	G	SNP	EIF2D	ENST00000271764	human	ensembl	74_37	-1	known	missense	c.149	p.I50T	0.147	NULL	pfam_TIF_SUI1,superfamily_TIF_SUI1,superfamily_SWIB_MDM2_domain,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,pfscan_TIF_SUI1	-	no_errors	EIF2D	HGNC	ENSG00000143486				67	0	0	49	17	25.7576
DYRK3	0	genome.wustl.edu	37	1	206821130	206821130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	206821130	206821130	C	T	SNP	DYRK3	ENST00000367109	human	ensembl	74_37	+1	known	missense	c.587	p.A196V	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479				187	0	0	128	48	27.2727
CR1	0	genome.wustl.edu	37	1	207739262	207739262	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	207739262	207739262	T	C	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	missense	c.3946	p.C1316R	0.873	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				123	0	0	80	32	28.5714
CR1	0	genome.wustl.edu	37	1	207787753	207787753	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	207787753	207787753	C	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	nonsense	c.6580	p.R2194*	0.477	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				48	0	0	70	7	9.09091
PLXNA2	0	genome.wustl.edu	37	1	208202363	208202363	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	208202363	208202363	G	A	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	silent	c.5250	p.N1750	0.964	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				93	0	0	105	9	7.89474
FAM43B	0	genome.wustl.edu	37	1	20879814	20879814	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	20879814	20879814	G	A	SNP	FAM43B	ENST00000332947	human	ensembl	74_37	+1	known	silent	c.348	p.P116	0.999	smart_PTB/PI_dom	smart_PTB/PI_dom	-	no_errors	FAM43B	HGNC	ENSG00000183114				8	0	0	8	5	38.4615
FAM43B	0	genome.wustl.edu	37	1	20879828	20879828	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	20879828	20879828	T	C	SNP	FAM43B	ENST00000332947	human	ensembl	74_37	+1	known	missense	c.362	p.M121T	1.000	smart_PTB/PI_dom	smart_PTB/PI_dom	-	no_errors	FAM43B	HGNC	ENSG00000183114				8	0	0	6	3	33.3333
PINK1	0	genome.wustl.edu	37	1	20976990	20976990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	20976990	20976990	G	A	SNP	PINK1	ENST00000321556	human	ensembl	74_37	+1	known	missense	c.1552	p.A518T	0.923	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PINK1	HGNC	ENSG00000158828				49	0	0	24	24	50
IRF6	0	genome.wustl.edu	37	1	209965706	209965706	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	209965706	209965706	C	T	SNP	IRF6	ENST00000367021	human	ensembl	74_37	-1	known	nonsense	c.575	p.W192*	1.000	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF6	HGNC	ENSG00000117595				67	0	0	40	52	56.5217
EIF4G3	0	genome.wustl.edu	37	1	21167512	21167512	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	21167512	21167512	G	A	SNP	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	nonsense	c.3748	p.Q1250*	1.000	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151				72	0	0	64	4	5.88235
DTL	0	genome.wustl.edu	37	1	212274197	212274197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	212274197	212274197	C	T	SNP	DTL	ENST00000366991	human	ensembl	74_37	+1	known	missense	c.1865	p.P622L	0.999	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DTL	HGNC	ENSG00000143476				105	0	0	62	36	36.7347
ANGEL2	0	genome.wustl.edu	37	1	213180445	213180445	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	213180445	213180445	A	G	SNP	ANGEL2	ENST00000460337	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	ANGEL2	HGNC	ENSG00000174606				59	0	0	39	5	11.3636
USH2A	0	genome.wustl.edu	37	1	215847625	215847625	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	215847625	215847625	C	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.13628	p.R4543M	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				134	0	0	60	72	54.5455
SKI	0	genome.wustl.edu	37	1	2161173	2161173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	2161173	2161173	G	A	SNP	SKI	ENST00000378536	human	ensembl	74_37	+1	known	missense	c.968	p.R323Q	1.000	NULL	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKI	HGNC	ENSG00000157933				8	0	0	5	4	44.4444
SPATA17	0	genome.wustl.edu	37	1	218036193	218036193	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	218036193	218036193	A	G	SNP	SPATA17	ENST00000366933	human	ensembl	74_37	+1	known	silent	c.1083	p.V361	0.954	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPATA17	HGNC	ENSG00000162814				169	0	0	48	50	51.0204
ALPL	0	genome.wustl.edu	37	1	21887702	21887702	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	21887702	21887702	C	T	SNP	ALPL	ENST00000374832	human	ensembl	74_37	+1	known	silent	c.294	p.S98	1.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPL	HGNC	ENSG00000162551				19	0	0	6	5	45.4545
SLC30A10	0	genome.wustl.edu	37	1	220091799	220091799	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	220091799	220091799	G	A	SNP	SLC30A10	ENST00000366926	human	ensembl	74_37	-1	known	silent	c.756	p.S252	0.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660				145	0	0	180	67	27.1255
BPNT1	0	genome.wustl.edu	37	1	220233097	220233097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	220233097	220233097	C	T	SNP	BPNT1	ENST00000322067	human	ensembl	74_37	-1	known	missense	c.709	p.V237I	1.000	pfam_Inositol_monophosphatase	pfam_Inositol_monophosphatase	-	no_errors	BPNT1	HGNC	ENSG00000162813				179	0	0	58	70	54.6875
MARK1	0	genome.wustl.edu	37	1	220825486	220825486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	220825486	220825486	G	A	SNP	MARK1	ENST00000366917	human	ensembl	74_37	+1	known	missense	c.1730	p.R577Q	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	MARK1	HGNC	ENSG00000116141				75	0	0	55	18	24.6575
HLX	0	genome.wustl.edu	37	1	221057925	221057925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	221057925	221057925	C	T	SNP	HLX	ENST00000366903	human	ensembl	74_37	+1	known	missense	c.1346	p.A449V	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	HLX	HGNC	ENSG00000136630				19	0	0	12	10	45.4545
TAF1A	0	genome.wustl.edu	37	1	222732052	222732052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	222732052	222732052	G	A	SNP	TAF1A	ENST00000350027	human	ensembl	74_37	-1	known	missense	c.1303	p.R435W	0.930	pirsf_RNA_pol_I_TAF1A/TAFI48	pirsf_RNA_pol_I_TAF1A/TAFI48	-	no_errors	TAF1A	HGNC	ENSG00000143498				79	0	0	24	24	50
FBXO28	0	genome.wustl.edu	37	1	224302029	224302029	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	224302029	224302029	G	A	SNP	FBXO28	ENST00000366862	human	ensembl	74_37	+1	known	silent	c.198	p.A66	1.000	superfamily_F-box_dom,pfscan_F-box_dom	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO28	HGNC	ENSG00000143756				16	0	0	13	6	31.5789
WNT4	0	genome.wustl.edu	37	1	22447841	22447841	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	22447841	22447841	G	A	SNP	WNT4	ENST00000290167	human	ensembl	74_37	-1	known	nonsense	c.451	p.Q151*	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt4	-	no_errors	WNT4	HGNC	ENSG00000162552				128	0	0	62	31	33.3333
PSEN2	0	genome.wustl.edu	37	1	227076545	227076545	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	227076545	227076545	C	A	SNP	PSEN2	ENST00000391872	human	ensembl	74_37	+1	known	silent	c.681	p.T227	0.560	pfam_Peptidase_A22A,smart_Preselin/SPP	pfam_Peptidase_A22A,smart_Preselin/SPP,prints_Pept_A22A_PS2,prints_Peptidase_A22A	-	no_errors	PSEN2	HGNC	ENSG00000143801				91	0	0	79	29	26.8519
C1orf35	0	genome.wustl.edu	37	1	228290076	228290076	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	228290076	228290076	C	T	SNP	C1orf35	ENST00000272139	human	ensembl	74_37	-1	known	missense	c.382	p.V128M	0.982	NULL	pfam_Kinase_phosphorylation_domain	-	no_errors	C1orf35	HGNC	ENSG00000143793				24	0	0	25	4	13.7931
GUK1	0	genome.wustl.edu	37	1	228336464	228336464	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	228336464	228336464	C	A	SNP	GUK1	ENST00000366728	human	ensembl	74_37	+1	known	missense	c.637	p.P213T	0.002	NULL	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like,tigrfam_Guanylate_kinase	-	no_errors	GUK1	HGNC	ENSG00000143774				23	0	0	36	9	20
IBA57	0	genome.wustl.edu	37	1	228362618	228362618	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	228362618	228362618	G	A	SNP	IBA57	ENST00000366711	human	ensembl	74_37	+1	known	silent	c.567	p.P189	0.930	pfam_GCV_T_N	pfam_GCV_T_N,pfam_GCV_T_C,tigrfam_YgfZ/GcvT_CS	-	no_errors	IBA57	HGNC	ENSG00000181873				19	0	0	26	16	38.0952
OBSCN	0	genome.wustl.edu	37	1	228430986	228430986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	228430986	228430986	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3032	p.T1011M	0.984	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				41	0	0	62	22	26.1905
OBSCN	0	genome.wustl.edu	37	1	228468439	228468439	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	228468439	228468439	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.8139	p.A2713	0.005	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				64	0	0	39	60	60.6061
OBSCN	0	genome.wustl.edu	37	1	228475464	228475464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	228475464	228475464	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.9614	p.R3205H	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				62	0	0	33	53	61.6279
TRIM11	0	genome.wustl.edu	37	1	228582509	228582509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	228582509	228582509	G	A	SNP	TRIM11	ENST00000284551	human	ensembl	74_37	-1	known	missense	c.1304	p.S435L	0.966	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM11	HGNC	ENSG00000154370				53	0	0	65	15	18.75
TRIM11	0	genome.wustl.edu	37	1	228584976	228584976	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	228584976	228584976	C	T	SNP	TRIM11	ENST00000475775	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TRIM11	HGNC	ENSG00000154370				16	0	0	6	4	40
TRIM17	0	genome.wustl.edu	37	1	228596398	228596398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	228596398	228596398	C	T	SNP	TRIM17	ENST00000295033	human	ensembl	74_37	-1	known	missense	c.938	p.S313N	1.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM17	HGNC	ENSG00000162931				79	0	0	57	81	58.6957
TAF5L	0	genome.wustl.edu	37	1	229738579	229738579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	229738579	229738579	G	A	SNP	TAF5L	ENST00000258281	human	ensembl	74_37	-1	known	missense	c.335	p.P112L	1.000	pfam_TFIID-su_WD40-assoc_reg	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TAF5L	HGNC	ENSG00000135801				90	0	0	57	24	29.6296
PGBD5	0	genome.wustl.edu	37	1	230492809	230492809	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	230492809	230492809	C	T	SNP	PGBD5	ENST00000321327	human	ensembl	74_37	-1	known	missense	c.680	p.R227H	0.203	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614				86	0	0	68	23	25.2747
COG2	0	genome.wustl.edu	37	1	230827229	230827229	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	230827229	230827229	C	T	SNP	COG2	ENST00000366669	human	ensembl	74_37	+1	known	silent	c.2034	p.P678	0.000	pfam_COG_complex_COG2_C	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775				86	0	0	80	14	14.8936
LUZP1	0	genome.wustl.edu	37	1	23415446	23415446	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	23415446	23415446	C	A	SNP	LUZP1	ENST00000302291	human	ensembl	74_37	-1	known	missense	c.3173	p.G1058V	0.052	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641				102	0	0	98	8	7.54717
LUZP1	0	genome.wustl.edu	37	1	23417973	23417973	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	23417973	23417973	G	A	SNP	LUZP1	ENST00000302291	human	ensembl	74_37	-1	known	nonsense	c.2782	p.R928*	0.998	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641				159	0	0	63	34	35.0515
HTR1D	0	genome.wustl.edu	37	1	23520194	23520194	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	23520194	23520194	C	T	SNP	HTR1D	ENST00000314113	human	ensembl	74_37	-1	known	silent	c.519	p.P173	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT1D_rcpt,prints_5HT_rcpt	-	no_errors	HTR1D	HGNC	ENSG00000179546				80	0	0	61	10	14.0845
LYST	0	genome.wustl.edu	37	1	235969335	235969335	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	235969335	235969335	A	G	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.3101	p.M1034T	0.003	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				132	0	0	113	6	5.04202
LYST	0	genome.wustl.edu	37	1	235971775	235971775	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	235971775	235971775	C	T	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	silent	c.2343	p.L781	0.995	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				54	0	0	54	11	16.9231
GPR137B	0	genome.wustl.edu	37	1	236306321	236306321	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	236306321	236306321	C	A	SNP	GPR137B	ENST00000366592	human	ensembl	74_37	+1	known	missense	c.399	p.N133K	1.000	NULL	NULL	-	no_errors	GPR137B	HGNC	ENSG00000077585				119	0	0	112	24	17.6471
MTR	0	genome.wustl.edu	37	1	236987485	236987485	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	236987485	236987485	T	C	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	silent	c.831	p.C277	1.000	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_MetH,pfscan_S_MeTrfase,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				118	1	0.840336	59	28	32.1839
MT1HL1	0	genome.wustl.edu	37	1	237167524	237167524	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	237167524	237167524	C	A	SNP	MT1HL1	ENST00000464121	human	ensembl	74_37	-1	known	missense	c.149	p.R50L	0.803	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT1HL1	HGNC	ENSG00000244020				72	0	0	78	5	6.0241
RYR2	0	genome.wustl.edu	37	1	237837411	237837411	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	237837411	237837411	C	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.8600	p.P2867H	1.000	pfam_Ryanodine_rcpt	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				88	0	0	110	13	10.5691
RYR2	0	genome.wustl.edu	37	1	237969570	237969570	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	237969570	237969570	A	G	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.14303	p.H4768R	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				72	0	0	52	15	22.3881
MDS2	0	genome.wustl.edu	37	1	23966274	23966274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	23966274	23966274	G	A	SNP	MDS2	ENST00000374555	human	ensembl	74_37	+1	known	missense	c.251	p.C84Y	0.067	NULL	NULL	-	no_errors	MDS2	HGNC	ENSG00000197880				9	0	0	4	5	55.5556
FMN2	0	genome.wustl.edu	37	1	240255470	240255470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	240255470	240255470	G	A	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.61	p.G21S	0.970	NULL	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				8	0	0	8	4	33.3333
FMN2	0	genome.wustl.edu	37	1	240257004	240257004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	240257004	240257004	G	A	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.1595	p.G532D	0.888	NULL	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				12	0	0	16	5	23.8095
TCEB3	0	genome.wustl.edu	37	1	24078209	24078209	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	24078209	24078209	C	A	SNP	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	missense	c.1192	p.P398T	0.001	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007				159	0	0	108	64	37.2093
KMO	0	genome.wustl.edu	37	1	241729893	241729893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	241729893	241729893	G	A	SNP	KMO	ENST00000366559	human	ensembl	74_37	+1	known	missense	c.790	p.A264T	0.967	pfam_mOase_FAD-bd	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	-	no_errors	KMO	HGNC	ENSG00000117009				111	0	0	75	17	18.4783
KIF26B	0	genome.wustl.edu	37	1	245849096	245849096	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	245849096	245849096	C	T	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	silent	c.2811	p.D937	0.682	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				34	0	0	34	14	29.1667
GRHL3	0	genome.wustl.edu	37	1	24668708	24668708	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	24668708	24668708	G	A	SNP	GRHL3	ENST00000350501	human	ensembl	74_37	+1	known	missense	c.1151	p.G384D	0.990	pfam_CP2	pfam_CP2,superfamily_C2_dom	-	no_errors	GRHL3	HGNC	ENSG00000158055				111	1	0.892857	66	50	43.1034
SCCPDH	0	genome.wustl.edu	37	1	246927597	246927597	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	246927597	246927597	A	G	SNP	SCCPDH	ENST00000366510	human	ensembl	74_37	+1	known	missense	c.1040	p.Q347R	0.762	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn	-	no_errors	SCCPDH	HGNC	ENSG00000143653				116	0	0	42	48	53.3333
AHCTF1	0	genome.wustl.edu	37	1	247024358	247024358	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	247024358	247024358	C	T	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	silent	c.4002	p.P1334	0.045	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				68	0	0	50	4	7.40741
AHCTF1	0	genome.wustl.edu	37	1	247081608	247081608	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	247081608	247081608	G	A	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	missense	c.92	p.A31V	1.000	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				46	0	0	36	10	21.7391
OR2C3	0	genome.wustl.edu	37	1	247694926	247694926	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	247694926	247694926	C	T	SNP	OR2C3	ENST00000366487	human	ensembl	74_37	-1	known	silent	c.888	p.T296	0.252	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2C3	HGNC	ENSG00000196242				97	0	0	72	9	11.1111
GCSAML	0	genome.wustl.edu	37	1	247737543	247737543	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	247737543	247737543	T	C	SNP	GCSAML	ENST00000366488	human	ensembl	74_37	+1	known	silent	c.267	p.Y89	0.996	NULL	NULL	-	no_errors	GCSAML	HGNC	ENSG00000169224				102	0	0	75	11	12.7907
OR2L2	0	genome.wustl.edu	37	1	248202060	248202060	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	248202060	248202060	G	A	SNP	OR2L2	ENST00000366479	human	ensembl	74_37	+1	known	missense	c.491	p.C164Y	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L2	HGNC	ENSG00000203663				249	0	0	222	12	5.12821
OR2L2	0	genome.wustl.edu	37	1	248202128	248202128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	248202128	248202128	G	A	SNP	OR2L2	ENST00000366479	human	ensembl	74_37	+1	known	missense	c.559	p.A187T	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L2	HGNC	ENSG00000203663				248	0	0	192	65	25.2918
OR2T2	0	genome.wustl.edu	37	1	248616514	248616514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	248616514	248616514	G	A	SNP	OR2T2	ENST00000342927	human	ensembl	74_37	+1	known	missense	c.416	p.R139H	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240				93	0	0	73	22	23.1579
OR2T11	0	genome.wustl.edu	37	1	248790058	248790058	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	248790058	248790058	A	G	SNP	OR2T11	ENST00000330803	human	ensembl	74_37	-1	known	silent	c.372	p.C124	0.378	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T11	HGNC	ENSG00000183130				42	0	0	6	71	92.2078
OR2T27	0	genome.wustl.edu	37	1	248813816	248813816	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	248813816	248813816	C	T	SNP	OR2T27	ENST00000344889	human	ensembl	74_37	-1	known	missense	c.370	p.V124I	0.051	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T27	HGNC	ENSG00000187701				45	0	0	52	12	18.75
SH3BP5L	0	genome.wustl.edu	37	1	249106189	249106189	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	249106189	249106189	G	A	SNP	SH3BP5L	ENST00000366472	human	ensembl	74_37	-1	known	silent	c.1092	p.D364	0.627	NULL	pfam_SH3-bd_5	-	no_errors	SH3BP5L	HGNC	ENSG00000175137				10	0	0	11	12	52.1739
SRRM1	0	genome.wustl.edu	37	1	24996800	24996800	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	24996800	24996800	G	A	SNP	SRRM1	ENST00000447431	human	ensembl	74_37	+1	known	silent	c.2430	p.P810	0.953	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	SRRM1	HGNC	ENSG00000133226				114	0	0	76	47	38.2114
RUNX3	0	genome.wustl.edu	37	1	25245750	25245750	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	25245750	25245750	G	A	SNP	RUNX3	ENST00000338888	human	ensembl	74_37	-1	known	silent	c.567	p.D189	0.990	pfam_Runt_dom,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_Runt_dom,prints_AML1_Runt	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX3	HGNC	ENSG00000020633				73	0	0	40	27	40.2985
STMN1	0	genome.wustl.edu	37	1	26230037	26230037	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	26230037	26230037	T	C	SNP	STMN1	ENST00000465604	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	STMN1	HGNC	ENSG00000117632				67	0	0	18	18	50
TRIM63	0	genome.wustl.edu	37	1	26384893	26384893	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	26384893	26384893	G	T	SNP	TRIM63	ENST00000374272	human	ensembl	74_37	-1	known	silent	c.819	p.A273	1.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM63	HGNC	ENSG00000158022				153	0	0	72	46	38.9831
CNKSR1	0	genome.wustl.edu	37	1	26510765	26510765	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	26510765	26510765	C	T	SNP	CNKSR1	ENST00000374253	human	ensembl	74_37	+1	known	silent	c.1008	p.S336	1.000	NULL	pfam_CRIC_domain_Chordata,pfam_Pleckstrin_homology,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR1	HGNC	ENSG00000142675				183	0	0	111	30	21.2766
CATSPER4	0	genome.wustl.edu	37	1	26527938	26527938	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	26527938	26527938	T	C	SNP	CATSPER4	ENST00000456354	human	ensembl	74_37	+1	known	silent	c.1293	p.T431	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782				137	0	0	70	66	48.5294
ZNF683	0	genome.wustl.edu	37	1	26691291	26691291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	26691291	26691291	C	T	SNP	ZNF683	ENST00000403843	human	ensembl	74_37	-1	known	missense	c.746	p.R249Q	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF683	HGNC	ENSG00000176083				91	0	0	45	34	43.038
ARID1A	0	genome.wustl.edu	37	1	27087914	27087914	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	27087914	27087914	A	G	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.2201	p.D734G	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				76	0	0	58	6	9.375
ZDHHC18	0	genome.wustl.edu	37	1	27175193	27175193	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	27175193	27175193	C	T	SNP	ZDHHC18	ENST00000374142	human	ensembl	74_37	+1	known	silent	c.591	p.C197	1.000	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC18	HGNC	ENSG00000204160				82	0	0	46	20	30.303
SFN	0	genome.wustl.edu	37	1	27189799	27189799	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	27189799	27189799	G	T	SNP	SFN	ENST00000339276	human	ensembl	74_37	+1	known	missense	c.96	p.K32N	0.987	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	SFN	HGNC	ENSG00000175793				94	0	0	51	44	46.3158
AHDC1	0	genome.wustl.edu	37	1	27875216	27875216	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	27875216	27875216	G	A	SNP	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	silent	c.3411	p.S1137	0.964	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705				124	0	0	91	66	42.0382
AHDC1	0	genome.wustl.edu	37	1	27875591	27875591	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	27875591	27875591	G	A	SNP	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	silent	c.3036	p.P1012	1.000	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705				49	0	0	30	23	43.3962
AHDC1	0	genome.wustl.edu	37	1	27877978	27877978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	27877978	27877978	C	T	SNP	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	missense	c.649	p.G217R	0.996	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705				62	0	0	45	40	47.0588
FGR	0	genome.wustl.edu	37	1	27943397	27943397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	27943397	27943397	G	A	SNP	FGR	ENST00000374003	human	ensembl	74_37	-1	known	missense	c.653	p.S218L	0.724	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FGR	HGNC	ENSG00000000938				154	0	0	113	17	13.0769
FAM76A	0	genome.wustl.edu	37	1	28060599	28060599	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	28060599	28060599	C	T	SNP	FAM76A	ENST00000010299	human	ensembl	74_37	+1	known	missense	c.361	p.R121C	1.000	NULL	NULL	-	no_errors	FAM76A	HGNC	ENSG00000009780				91	0	0	28	22	44
EYA3	0	genome.wustl.edu	37	1	28362100	28362100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	28362100	28362100	C	T	SNP	EYA3	ENST00000373871	human	ensembl	74_37	-1	known	missense	c.316	p.A106T	0.994	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA3	HGNC	ENSG00000158161				186	0	0	88	49	35.7664
DNAJC8	0	genome.wustl.edu	37	1	28534975	28534975	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	28534975	28534975	A	G	SNP	DNAJC8	ENST00000470967	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.202	-	-	-	no_errors	DNAJC8	HGNC	ENSG00000126698				8	0	0	8	3	27.2727
PHACTR4	0	genome.wustl.edu	37	1	28819566	28819566	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	28819566	28819566	G	A	SNP	PHACTR4	ENST00000373836	human	ensembl	74_37	+1	known	missense	c.2086	p.E696K	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR4	HGNC	ENSG00000204138				127	0	0	43	28	39.4366
OPRD1	0	genome.wustl.edu	37	1	29185674	29185674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	29185674	29185674	C	T	SNP	OPRD1	ENST00000234961	human	ensembl	74_37	+1	known	missense	c.436	p.R146C	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Delta_opi_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt	-	no_errors	OPRD1	HGNC	ENSG00000116329				92	0	0	57	52	47.7064
EPB41	0	genome.wustl.edu	37	1	29319963	29319963	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	29319963	29319963	T	C	SNP	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	missense	c.590	p.L197S	0.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023				115	0	0	93	10	9.70874
PTPRU	0	genome.wustl.edu	37	1	29630483	29630483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	29630483	29630483	C	T	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.2623	p.R875C	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				94	0	0	88	13	12.8713
MATN1	0	genome.wustl.edu	37	1	31189677	31189677	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	31189677	31189677	G	A	SNP	MATN1	ENST00000373765	human	ensembl	74_37	-1	known	silent	c.750	p.H250	0.002	pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510				55	0	0	17	13	43.3333
MATN1	0	genome.wustl.edu	37	1	31194331	31194331	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	31194331	31194331	C	T	SNP	MATN1	ENST00000373765	human	ensembl	74_37	-1	known	missense	c.362	p.G121D	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510				209	2	0.947867	178	20	10.101
HCRTR1	0	genome.wustl.edu	37	1	32086455	32086455	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	32086455	32086455	G	A	SNP	HCRTR1	ENST00000373706	human	ensembl	74_37	+1	known	silent	c.390	p.V130	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_1,prints_NPY_rcpt	-	no_errors	HCRTR1	HGNC	ENSG00000121764				180	0	0	99	67	40.3614
BAI2	0	genome.wustl.edu	37	1	32202210	32202210	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	32202210	32202210	G	A	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	missense	c.3094	p.R1032C	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753				42	0	0	31	15	32.6087
BAI2	0	genome.wustl.edu	37	1	32221986	32221986	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	32221986	32221986	A	G	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	missense	c.452	p.L151P	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753				31	0	0	37	15	28.8462
KPNA6	0	genome.wustl.edu	37	1	32628093	32628093	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	32628093	32628093	C	T	SNP	KPNA6	ENST00000545542	human	ensembl	74_37	+1	known	silent	c.894	p.S298	0.884	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA6	HGNC	ENSG00000025800				105	0	0	44	37	45.679
ZBTB8OS	0	genome.wustl.edu	37	1	33116210	33116210	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	33116210	33116210	C	T	SNP	ZBTB8OS	ENST00000479075	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.583	-	-	-	no_errors	ZBTB8OS	HGNC	ENSG00000176261				109	0	0	47	15	24.1935
YARS	0	genome.wustl.edu	37	1	33241691	33241691	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	33241691	33241691	G	A	SNP	YARS	ENST00000373477	human	ensembl	74_37	-1	known	missense	c.1478	p.A493V	0.999	superfamily_NA-bd_OB-fold	pfam_aa-tRNA-synth_Ic,pfam_tRNA-bd_dom,superfamily_NA-bd_OB-fold,prints_Tyr-tRNA-ligase,pfscan_tRNA-bd_dom,tigrfam_Tyr-tRNA-ligase	-	no_errors	YARS	HGNC	ENSG00000134684				28	0	0	20	11	35.4839
PRDM16	0	genome.wustl.edu	37	1	3328550	3328550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	3328550	3328550	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	missense	c.1789	p.D597N	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				147	0	0	92	65	41.4013
PRDM16	0	genome.wustl.edu	37	1	3328729	3328729	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	3328729	3328729	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	silent	c.1968	p.P656	0.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				93	0	0	64	46	41.8182
PRDM16	0	genome.wustl.edu	37	1	3328745	3328745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	3328745	3328745	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	missense	c.1984	p.V662M	0.000	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				93	0	0	94	14	12.963
RNF19B	0	genome.wustl.edu	37	1	33411153	33411153	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	33411153	33411153	G	A	SNP	RNF19B	ENST00000373456	human	ensembl	74_37	-1	known	missense	c.1226	p.S409L	0.995	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19B	HGNC	ENSG00000116514				82	0	0	32	21	39.6226
ADC	0	genome.wustl.edu	37	1	33585810	33585810	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	33585810	33585810	C	T	SNP	ADC	ENST00000471119	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.857	-	-	-	no_errors	ADC	HGNC	ENSG00000142920				68	0	0	53	9	14.5161
PHC2	0	genome.wustl.edu	37	1	33799727	33799727	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	33799727	33799727	T	G	SNP	PHC2	ENST00000419414	human	ensembl	74_37	-1	known	missense	c.1725	p.E575D	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC2	HGNC	ENSG00000134686				109	0	0	88	10	10.2041
ARHGEF16	0	genome.wustl.edu	37	1	3391302	3391302	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	3391302	3391302	G	A	SNP	ARHGEF16	ENST00000378378	human	ensembl	74_37	+1	known	missense	c.1336	p.E446K	0.520	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF16	HGNC	ENSG00000130762				91	0	0	46	38	45.2381
ZMYM1	0	genome.wustl.edu	37	1	35580393	35580393	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	35580393	35580393	T	C	SNP	ZMYM1	ENST00000359858	human	ensembl	74_37	+1	novel	missense	c.2962	p.Y988H	1.000	superfamily_RNaseH-like_dom	pfam_Znf_MYM,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_TRASH_dom	-	no_errors	ZMYM1	HGNC	ENSG00000197056				39	0	0	14	10	41.6667
CLSPN	0	genome.wustl.edu	37	1	36217106	36217106	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	36217106	36217106	A	G	SNP	CLSPN	ENST00000318121	human	ensembl	74_37	-1	known	silent	c.1773	p.G591	1.000	NULL	NULL	-	no_errors	CLSPN	HGNC	ENSG00000092853				49	0	0	18	7	28
MANEAL	0	genome.wustl.edu	37	1	38265771	38265771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	38265771	38265771	C	T	SNP	MANEAL	ENST00000373045	human	ensembl	74_37	+1	known	missense	c.1270	p.R424C	1.000	NULL	NULL	-	no_errors	MANEAL	HGNC	ENSG00000185090				142	0	0	74	40	35.0877
BMP8B	0	genome.wustl.edu	37	1	40230563	40230563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	40230563	40230563	G	A	SNP	BMP8B	ENST00000397360	human	ensembl	74_37	-1	known	missense	c.791	p.P264L	0.000	NULL	pfam_TGF-b_N	-	no_errors	BMP8B	HGNC	ENSG00000116985				47	0	0	35	7	16.6667
ZNF684	0	genome.wustl.edu	37	1	41007369	41007369	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	41007369	41007369	C	T	SNP	ZNF684	ENST00000372699	human	ensembl	74_37	+1	known	silent	c.225	p.H75	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF684	HGNC	ENSG00000117010				33	0	0	22	6	21.4286
KCNQ4	0	genome.wustl.edu	37	1	41285124	41285124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	41285124	41285124	G	A	SNP	KCNQ4	ENST00000347132	human	ensembl	74_37	+1	known	missense	c.814	p.D272N	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ4	HGNC	ENSG00000117013				150	0	0	110	11	9.09091
HIVEP3	0	genome.wustl.edu	37	1	41978664	41978664	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	41978664	41978664	C	A	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	missense	c.6228	p.Q2076H	0.957	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				41	0	0	28	11	28.2051
ELOVL1	0	genome.wustl.edu	37	1	43830302	43830302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	43830302	43830302	C	T	SNP	ELOVL1	ENST00000372458	human	ensembl	74_37	-1	known	missense	c.392	p.R131Q	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL1	HGNC	ENSG00000066322				149	0	0	66	45	40.5405
B4GALT2	0	genome.wustl.edu	37	1	44447485	44447485	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	44447485	44447485	G	A	SNP	B4GALT2	ENST00000309519	human	ensembl	74_37	+1	known	silent	c.525	p.A175	0.721	pfam_Galactosyl_T_C	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT2	HGNC	ENSG00000117411				78	0	0	65	20	23.5294
KLF17	0	genome.wustl.edu	37	1	44595272	44595272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	44595272	44595272	G	A	SNP	KLF17	ENST00000372299	human	ensembl	74_37	+1	known	missense	c.329	p.R110Q	0.379	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF17	HGNC	ENSG00000171872				159	0	0	96	65	40.3727
RNF220	0	genome.wustl.edu	37	1	44878019	44878019	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	44878019	44878019	G	A	SNP	RNF220	ENST00000355387	human	ensembl	74_37	+1	known	missense	c.250	p.A84T	1.000	NULL	superfamily_Peptidase_M20_dimer,pfscan_Znf_RING	-	no_errors	RNF220	HGNC	ENSG00000187147				463	0	0	190	139	42.2492
BEST4	0	genome.wustl.edu	37	1	45250346	45250346	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	45250346	45250346	G	A	SNP	BEST4	ENST00000372207	human	ensembl	74_37	-1	known	missense	c.1103	p.A368V	0.997	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST4	HGNC	ENSG00000142959				59	0	0	50	9	15.2542
ZSWIM5	0	genome.wustl.edu	37	1	45553798	45553798	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	45553798	45553798	C	T	SNP	ZSWIM5	ENST00000359600	human	ensembl	74_37	-1	known	missense	c.707	p.G236D	1.000	pfscan_Znf_SWIM	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415				183	0	0	72	39	35.1351
CCDC17	0	genome.wustl.edu	37	1	46087329	46087329	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	46087329	46087329	G	A	SNP	CCDC17	ENST00000343901	human	ensembl	74_37	-1	known	missense	c.1069	p.P357S	1.000	NULL	NULL	-	no_errors	CCDC17	HGNC	ENSG00000159588				34	0	0	25	3	10.7143
RAD54L	0	genome.wustl.edu	37	1	46726490	46726490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	46726490	46726490	C	T	SNP	RAD54L	ENST00000371975	human	ensembl	74_37	+1	known	missense	c.569	p.T190M	1.000	pfam_SNF2_N,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L	HGNC	ENSG00000085999				53	0	0	33	34	50.7463
LRRC41	0	genome.wustl.edu	37	1	46746099	46746099	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	46746099	46746099	C	A	SNP	LRRC41	ENST00000343304	human	ensembl	74_37	-1	known	missense	c.1890	p.Q630H	0.999	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128				145	0	0	116	12	9.375
LRRC41	0	genome.wustl.edu	37	1	46746884	46746884	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	46746884	46746884	C	T	SNP	LRRC41	ENST00000343304	human	ensembl	74_37	-1	known	missense	c.1669	p.V557I	0.999	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128				88	0	0	34	29	46.0317
STIL	0	genome.wustl.edu	37	1	47717513	47717513	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	47717513	47717513	T	C	SNP	STIL	ENST00000371877	human	ensembl	74_37	-1	known	silent	c.3162	p.L1054	0.980	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473				122	0	0	55	37	40.2174
DMRTA2	0	genome.wustl.edu	37	1	50885025	50885025	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	50885025	50885025	C	A	SNP	DMRTA2	ENST00000404795	human	ensembl	74_37	-1	known	missense	c.941	p.R314L	1.000	pfam_DMA,superfamily_UBA-like	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTA2	HGNC	ENSG00000142700				66	0	0	71	4	5.33333
TTC39A	0	genome.wustl.edu	37	1	51755785	51755785	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	51755785	51755785	T	C	SNP	TTC39A	ENST00000447632	human	ensembl	74_37	-1	known	missense	c.1493	p.E498G	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39A	HGNC	ENSG00000085831				39	0	0	26	6	18.75
EPS15	0	genome.wustl.edu	37	1	51934212	51934212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	51934212	51934212	G	A	SNP	EPS15	ENST00000371733	human	ensembl	74_37	-1	known	missense	c.242	p.A81V	1.000	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	smart_EPS15_homology,smart_EF_hand_dom,smart_Ubiquitin-int_motif,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15	HGNC	ENSG00000085832				55	0	0	25	17	40.4762
EPS15	0	genome.wustl.edu	37	1	51938529	51938529	+	Splice_Site	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	51938529	51938529	A	G	SNP	EPS15	ENST00000371733	human	ensembl	74_37	-1	known	splice_site	c.165+2	e3+2	1.000	-	-	-	no_errors	EPS15	HGNC	ENSG00000085832				123	0	0	58	40	40.8163
FAM151A	0	genome.wustl.edu	37	1	55078225	55078225	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	55078225	55078225	G	T	SNP	FAM151A	ENST00000302250	human	ensembl	74_37	-1	known	missense	c.734	p.P245H	0.998	pfam_DUF2181	pfam_DUF2181	-	no_errors	FAM151A	HGNC	ENSG00000162391				82	0	0	63	8	11.2676
C1orf177	0	genome.wustl.edu	37	1	55282759	55282759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	55282759	55282759	G	A	SNP	C1orf177	ENST00000371273	human	ensembl	74_37	+1	known	missense	c.1148	p.R383H	1.000	NULL	NULL	-	no_errors	C1orf177	HGNC	ENSG00000162398				62	0	0	72	5	6.49351
PCSK9	0	genome.wustl.edu	37	1	55518043	55518043	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	55518043	55518043	G	A	SNP	PCSK9	ENST00000302118	human	ensembl	74_37	+1	known	missense	c.616	p.E206K	0.609	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_Inhibitor_I9,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK9	HGNC	ENSG00000169174				77	0	0	49	13	20.9677
PPAP2B	0	genome.wustl.edu	37	1	57002717	57002717	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	57002717	57002717	A	T	SNP	PPAP2B	ENST00000371250	human	ensembl	74_37	-1	known	missense	c.207	p.N69K	0.932	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAP2B	HGNC	ENSG00000162407				128	0	0	59	49	45.3704
MYSM1	0	genome.wustl.edu	37	1	59125788	59125788	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	59125788	59125788	T	C	SNP	MYSM1	ENST00000472487	human	ensembl	74_37	-1	known	missense	c.2368	p.N790D	1.000	NULL	pfam_SWIRM,pfam_JAB_MPN_dom,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,smart_JAB_MPN_dom,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	MYSM1	HGNC	ENSG00000162601				67	0	0	13	9	40.9091
INADL	0	genome.wustl.edu	37	1	62365309	62365309	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	62365309	62365309	C	A	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	missense	c.3186	p.H1062Q	1.000	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				171	0	0	67	49	42.2414
KANK4	0	genome.wustl.edu	37	1	62738950	62738950	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	62738950	62738950	A	C	SNP	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	missense	c.1826	p.L609R	0.998	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854				42	0	0	37	19	33.9286
ALG6	0	genome.wustl.edu	37	1	63902675	63902675	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	63902675	63902675	A	G	SNP	ALG6	ENST00000371108	human	ensembl	74_37	+1	known	missense	c.1508	p.Q503R	1.000	NULL	pfam_Glyco_trans_ALG6/ALG8	-	no_errors	ALG6	HGNC	ENSG00000088035				46	0	0	23	13	36.1111
CACHD1	0	genome.wustl.edu	37	1	65143987	65143987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	65143987	65143987	G	A	SNP	CACHD1	ENST00000371073	human	ensembl	74_37	+1	known	missense	c.3238	p.A1080T	0.998	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966				54	0	0	12	16	57.1429
DNAJC6	0	genome.wustl.edu	37	1	65877006	65877006	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	65877006	65877006	C	T	SNP	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	missense	c.2708	p.A903V	1.000	superfamily_DnaJ_domain	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				68	0	0	63	4	5.97015
ZBTB48	0	genome.wustl.edu	37	1	6649173	6649173	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	6649173	6649173	C	T	SNP	ZBTB48	ENST00000377674	human	ensembl	74_37	+1	known	silent	c.1968	p.P656	0.083	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB48	HGNC	ENSG00000204859				90	0	0	98	9	8.41121
THAP3	0	genome.wustl.edu	37	1	6692469	6692469	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	6692469	6692469	G	C	SNP	THAP3	ENST00000054650	human	ensembl	74_37	+1	known	missense	c.352	p.A118P	0.000	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP3	HGNC	ENSG00000041988				58	0	0	63	10	13.6986
C1orf173	0	genome.wustl.edu	37	1	75097559	75097559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	75097559	75097559	C	T	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.657	p.M219I	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				94	0	0	41	18	30.5085
IFI44L	0	genome.wustl.edu	37	1	79094073	79094073	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	79094073	79094073	T	C	SNP	IFI44L	ENST00000370751	human	ensembl	74_37	+1	known	missense	c.473	p.V158A	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	IFI44L	HGNC	ENSG00000137959				72	0	0	36	3	7.69231
TTLL7	0	genome.wustl.edu	37	1	84386822	84386822	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	84386822	84386822	G	A	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	nonsense	c.1312	p.R438*	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				65	0	0	29	8	21.6216
TTLL7	0	genome.wustl.edu	37	1	84415457	84415457	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	84415457	84415457	A	G	SNP	TTLL7	ENST00000467670	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TTLL7	HGNC	ENSG00000137941				43	0	0	8	7	46.6667
SSX2IP	0	genome.wustl.edu	37	1	85121543	85121543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	85121543	85121543	G	A	SNP	SSX2IP	ENST00000342203	human	ensembl	74_37	-1	known	missense	c.1361	p.T454I	1.000	NULL	pfam_Afadin/alpha-actinin-bd	-	no_errors	SSX2IP	HGNC	ENSG00000117155				63	0	0	16	17	51.5152
SAMD11	0	genome.wustl.edu	37	1	879333	879333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	879333	879333	G	A	SNP	SAMD11	ENST00000342066	human	ensembl	74_37	+1	known	missense	c.1846	p.V616M	0.980	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD11	HGNC	ENSG00000187634				90	0	0	37	36	49.3151
GBP5	0	genome.wustl.edu	37	1	89733145	89733145	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	89733145	89733145	T	C	SNP	GBP5	ENST00000343435	human	ensembl	74_37	-1	known	missense	c.383	p.Y128C	1.000	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP5	HGNC	ENSG00000154451				72	0	0	34	10	22.7273
EVI5	0	genome.wustl.edu	37	1	92979126	92979126	+	Splice_Site	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	92979126	92979126	A	G	SNP	EVI5	ENST00000540033	human	ensembl	74_37	-1	known	splice_site	c.2433+2	e18+2	0.983	-	-	-	no_errors	EVI5	HGNC	ENSG00000067208				19	0	0	15	8	34.7826
H6PD	0	genome.wustl.edu	37	1	9305037	9305037	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	9305037	9305037	G	A	SNP	H6PD	ENST00000377403	human	ensembl	74_37	+1	known	missense	c.44	p.G15D	1.000	NULL	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,prints_G6P_DH,tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	H6PD	HGNC	ENSG00000049239				59	0	0	26	14	35
ARHGAP29	0	genome.wustl.edu	37	1	94650428	94650428	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	94650428	94650428	C	A	SNP	ARHGAP29	ENST00000260526	human	ensembl	74_37	-1	known	missense	c.2109	p.Q703H	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962				50	0	0	16	12	42.8571
AGRN	0	genome.wustl.edu	37	1	984699	984699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	984699	984699	G	A	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	missense	c.4382	p.R1461Q	0.997	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				27	0	0	26	15	36.5854
GOT1	0	genome.wustl.edu	37	10	101163225	101163225	+	Splice_Site	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	101163225	101163225	C	T	SNP	GOT1	ENST00000370508	human	ensembl	74_37	-1	known	splice_site	c.959+1	e7+1	1.000	-	-	-	no_errors	GOT1	HGNC	ENSG00000120053				121	0	0	57	24	29.6296
C10orf2	0	genome.wustl.edu	37	10	102748871	102748871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	102748871	102748871	C	T	SNP	C10orf2	ENST00000311916	human	ensembl	74_37	+1	known	missense	c.904	p.R302W	0.999	NULL	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,superfamily_P-loop_NTPase,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815				224	0	0	204	17	7.69231
C10orf2	0	genome.wustl.edu	37	10	102748967	102748967	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	102748967	102748967	C	T	SNP	C10orf2	ENST00000311916	human	ensembl	74_37	+1	known	nonsense	c.1000	p.R334*	1.000	superfamily_P-loop_NTPase	pfam_Circ_KaiC/RadA,pfam_DNA_helicase_DnaB-like_C,superfamily_P-loop_NTPase,pfscan_DNA_helicase_DnaB-like_C	-	no_errors	C10orf2	HGNC	ENSG00000107815				108	0	0	54	43	44.3299
LZTS2	0	genome.wustl.edu	37	10	102766799	102766799	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	102766799	102766799	C	T	SNP	LZTS2	ENST00000370220	human	ensembl	74_37	+1	known	silent	c.1884	p.N628	1.000	NULL	NULL	-	no_errors	LZTS2	HGNC	ENSG00000107816				12	0	0	6	8	57.1429
TLX1	0	genome.wustl.edu	37	10	102893992	102893992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	102893992	102893992	G	A	SNP	TLX1	ENST00000370196	human	ensembl	74_37	+1	known	missense	c.629	p.R210H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	TLX1	HGNC	ENSG00000107807				19	0	0	12	8	40
FBXW4	0	genome.wustl.edu	37	10	103371152	103371152	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	103371152	103371152	A	T	SNP	FBXW4	ENST00000331272	human	ensembl	74_37	-1	known	missense	c.1135	p.S379T	0.899	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW4	HGNC	ENSG00000107829				44	0	0	21	17	44.7368
FBXW4	0	genome.wustl.edu	37	10	103432772	103432772	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	103432772	103432772	C	T	SNP	FBXW4	ENST00000331272	human	ensembl	74_37	-1	known	missense	c.575	p.S192N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW4	HGNC	ENSG00000107829				56	0	0	31	23	42.5926
GBF1	0	genome.wustl.edu	37	10	104136713	104136713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	104136713	104136713	G	A	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	missense	c.4307	p.R1436H	0.994	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				96	0	0	47	47	50
NFKB2	0	genome.wustl.edu	37	10	104159847	104159847	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	104159847	104159847	C	A	SNP	NFKB2	ENST00000369966	human	ensembl	74_37	+1	known	missense	c.1480	p.L494I	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150				63	0	0	55	40	42.1053
TMEM180	0	genome.wustl.edu	37	10	104231098	104231098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	104231098	104231098	G	A	SNP	TMEM180	ENST00000238936	human	ensembl	74_37	+1	known	missense	c.773	p.R258Q	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM180	HGNC	ENSG00000138111				63	0	0	45	23	33.8235
CYP17A1	0	genome.wustl.edu	37	10	104597068	104597068	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	104597068	104597068	C	A	SNP	CYP17A1	ENST00000369887	human	ensembl	74_37	-1	known	missense	c.51	p.W17C	0.878	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP17A1	HGNC	ENSG00000148795				77	0	0	58	23	28.3951
COL17A1	0	genome.wustl.edu	37	10	105797491	105797491	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	105797491	105797491	G	T	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	silent	c.3111	p.P1037	0.998	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				39	0	0	20	17	45.9459
COL17A1	0	genome.wustl.edu	37	10	105836080	105836080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	105836080	105836080	C	T	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	missense	c.310	p.V104I	0.062	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				108	0	0	107	9	7.75862
GPAM	0	genome.wustl.edu	37	10	113918098	113918098	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	113918098	113918098	C	T	SNP	GPAM	ENST00000348367	human	ensembl	74_37	-1	known	silent	c.1956	p.Q652	1.000	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	GPAM	HGNC	ENSG00000119927				134	0	0	86	6	6.52174
ACSL5	0	genome.wustl.edu	37	10	114176693	114176693	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	114176693	114176693	G	A	SNP	ACSL5	ENST00000356116	human	ensembl	74_37	+1	known	silent	c.1299	p.L433	0.945	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL5	HGNC	ENSG00000197142				104	0	0	47	27	36.4865
TCF7L2	0	genome.wustl.edu	37	10	114911586	114911586	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	114911586	114911586	C	A	SNP	TCF7L2	ENST00000355995	human	ensembl	74_37	+1	known	silent	c.1104	p.V368	0.809	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L2	HGNC	ENSG00000148737				79	0	0	33	29	46.7742
WDR37	0	genome.wustl.edu	37	10	1151106	1151106	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	1151106	1151106	C	A	SNP	WDR37	ENST00000263150	human	ensembl	74_37	+1	known	silent	c.1002	p.T334	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR37	HGNC	ENSG00000047056				58	0	0	31	5	13.8889
C10orf118	0	genome.wustl.edu	37	10	115887358	115887358	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	115887358	115887358	T	C	SNP	C10orf118	ENST00000369287	human	ensembl	74_37	-1	known	missense	c.2255	p.N752S	1.000	NULL	superfamily_Prefoldin	-	no_errors	C10orf118	HGNC	ENSG00000165813				79	0	0	28	24	46.1538
FAM160B1	0	genome.wustl.edu	37	10	116605175	116605175	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	116605175	116605175	C	T	SNP	FAM160B1	ENST00000369248	human	ensembl	74_37	+1	known	nonsense	c.1063	p.R355*	1.000	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160B1	HGNC	ENSG00000151553				87	0	0	25	22	46.8085
VAX1	0	genome.wustl.edu	37	10	118896162	118896162	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	118896162	118896162	C	A	SNP	VAX1	ENST00000369206	human	ensembl	74_37	-1	known	missense	c.250	p.G84W	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	VAX1	HGNC	ENSG00000148704				62	0	0	50	24	32.4324
UPF2	0	genome.wustl.edu	37	10	11998338	11998338	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	11998338	11998338	T	C	SNP	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	missense	c.2555	p.D852G	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461				92	0	0	40	23	36.5079
MCMBP	0	genome.wustl.edu	37	10	121591083	121591083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	121591083	121591083	G	A	SNP	MCMBP	ENST00000360003	human	ensembl	74_37	-1	known	missense	c.1832	p.T611M	0.746	pfam_MCM_complex-bd	pfam_MCM_complex-bd	-	no_errors	MCMBP	HGNC	ENSG00000197771				41	0	0	19	2	9.52381
FAM24B	0	genome.wustl.edu	37	10	124608899	124608899	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	124608899	124608899	C	T	SNP	FAM24B	ENST00000368896	human	ensembl	74_37	-1	known	nonsense	c.149	p.W50*	0.000	NULL	NULL	-	no_errors	FAM24B	HGNC	ENSG00000213185				80	0	0	42	38	47.5
HMX2	0	genome.wustl.edu	37	10	124907929	124907929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	124907929	124907929	C	T	SNP	HMX2	ENST00000339992	human	ensembl	74_37	+1	known	missense	c.35	p.P12L	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HMX2	HGNC	ENSG00000188816				86	0	0	92	10	9.80392
CHST15	0	genome.wustl.edu	37	10	125780849	125780849	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	125780849	125780849	G	A	SNP	CHST15	ENST00000346248	human	ensembl	74_37	-1	known	nonsense	c.1270	p.Q424*	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	CHST15	HGNC	ENSG00000182022				55	0	0	17	13	43.3333
OAT	0	genome.wustl.edu	37	10	126090338	126090338	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	126090338	126090338	C	G	SNP	OAT	ENST00000368845	human	ensembl	74_37	-1	known	missense	c.971	p.G324A	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_Orn_aminotrans	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_Orn_aminotrans	-	no_errors	OAT	HGNC	ENSG00000065154				44	0	0	20	17	45.9459
C10orf137	0	genome.wustl.edu	37	10	127424224	127424224	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	127424224	127424224	C	T	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	silent	c.1509	p.S503	0.968	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				35	0	0	16	17	51.5152
DHX32	0	genome.wustl.edu	37	10	127541200	127541200	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	127541200	127541200	C	T	SNP	DHX32	ENST00000284690	human	ensembl	74_37	-1	known	silent	c.1104	p.P368	0.002	superfamily_P-loop_NTPase	pfam_Helicase-assoc_dom,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DHX32	HGNC	ENSG00000089876				78	0	0	27	12	30.7692
FANK1	0	genome.wustl.edu	37	10	127677164	127677164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	127677164	127677164	C	T	SNP	FANK1	ENST00000368693	human	ensembl	74_37	+1	known	missense	c.236	p.T79M	0.990	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3,prints_Ankyrin_rpt	-	no_errors	FANK1	HGNC	ENSG00000203780				210	0	0	98	54	35.5263
DOCK1	0	genome.wustl.edu	37	10	128841408	128841408	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	128841408	128841408	T	C	SNP	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	silent	c.2118	p.F706	0.973	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				19	0	0	11	7	38.8889
CLRN3	0	genome.wustl.edu	37	10	129676597	129676597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	129676597	129676597	G	A	SNP	CLRN3	ENST00000368671	human	ensembl	74_37	-1	known	missense	c.497	p.P166L	0.131	NULL	NULL	-	no_errors	CLRN3	HGNC	ENSG00000180745				156	0	0	109	6	5.21739
MGMT	0	genome.wustl.edu	37	10	131334542	131334542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	131334542	131334542	G	A	SNP	MGMT	ENST00000306010	human	ensembl	74_37	+1	known	missense	c.119	p.R40H	0.000	pfam_MethylG_MeTrfase	pfam_MethylDNA_cys_MeTrfase_DNA-bd,pfam_MethylG_MeTrfase,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	-	no_errors	MGMT	HGNC	ENSG00000170430				96	0	0	53	20	27.3973
EBF3	0	genome.wustl.edu	37	10	131665498	131665498	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	131665498	131665498	G	C	SNP	EBF3	ENST00000355311	human	ensembl	74_37	-1	known	missense	c.946	p.P316A	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF3	HGNC	ENSG00000108001				50	0	0	27	7	20.5882
JAKMIP3	0	genome.wustl.edu	37	10	133930788	133930788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	133930788	133930788	C	T	SNP	JAKMIP3	ENST00000298622	human	ensembl	74_37	+1	known	missense	c.343	p.R115W	1.000	NULL	NULL	-	no_errors	JAKMIP3	HGNC	ENSG00000188385				89	0	0	54	33	37.931
NKX6-2	0	genome.wustl.edu	37	10	134598811	134598811	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	134598811	134598811	C	T	SNP	NKX6-2	ENST00000368592	human	ensembl	74_37	-1	known	silent	c.552	p.S184	0.854	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	NKX6-2	HGNC	ENSG00000148826				23	0	0	12	15	55.5556
NKX6-2	0	genome.wustl.edu	37	10	134598905	134598905	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	134598905	134598905	G	T	SNP	NKX6-2	ENST00000368592	human	ensembl	74_37	-1	known	missense	c.458	p.P153Q	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	NKX6-2	HGNC	ENSG00000148826				16	0	0	9	13	59.0909
TTC40	0	genome.wustl.edu	37	10	134628224	134628224	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	134628224	134628224	A	G	SNP	TTC40	ENST00000263170	human	ensembl	74_37	-1	known	silent	c.1698	p.P566	0.000	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811				30	0	0	10	14	58.3333
TTC40	0	genome.wustl.edu	37	10	134660807	134660807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	134660807	134660807	C	T	SNP	TTC40	ENST00000263170	human	ensembl	74_37	-1	known	missense	c.454	p.G152S	0.000	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811				187	0	0	112	62	35.6322
FRMD4A	0	genome.wustl.edu	37	10	13698668	13698668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	13698668	13698668	G	A	SNP	FRMD4A	ENST00000357447	human	ensembl	74_37	-1	known	missense	c.2921	p.T974I	1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474				27	0	0	16	3	15.7895
ADARB2	0	genome.wustl.edu	37	10	1405277	1405277	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	1405277	1405277	G	A	SNP	ADARB2	ENST00000381312	human	ensembl	74_37	-1	known	silent	c.1023	p.D341	1.000	pfscan_dsRNA-bd_dom	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736				16	0	0	14	4	22.2222
FAM188A	0	genome.wustl.edu	37	10	15824188	15824188	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	15824188	15824188	T	C	SNP	FAM188A	ENST00000277632	human	ensembl	74_37	-1	known	missense	c.1154	p.Y385C	1.000	NULL	NULL	-	no_errors	FAM188A	HGNC	ENSG00000148481				50	0	0	21	6	22.2222
CUBN	0	genome.wustl.edu	37	10	16932371	16932371	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	16932371	16932371	G	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.8754	p.S2918	1.000	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				65	0	0	27	15	35.7143
SKIDA1	0	genome.wustl.edu	37	10	21805320	21805320	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	21805320	21805320	G	A	SNP	SKIDA1	ENST00000449193	human	ensembl	74_37	-1	known	nonsense	c.1432	p.Q478*	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	SKIDA1	HGNC	ENSG00000180592				54	0	0	41	18	30.5085
DNAJC1	0	genome.wustl.edu	37	10	22048227	22048227	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	22048227	22048227	C	A	SNP	DNAJC1	ENST00000376980	human	ensembl	74_37	-1	known	missense	c.1468	p.A490S	0.000	pfscan_Myb-like_dom	pfam_DnaJ_domain,pfam_SANT/Myb,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC1	HGNC	ENSG00000136770				127	0	0	57	28	32.9412
ARMC3	0	genome.wustl.edu	37	10	23292307	23292307	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	23292307	23292307	T	C	SNP	ARMC3	ENST00000298032	human	ensembl	74_37	+1	known	silent	c.1695	p.S565	0.912	NULL	pfam_Armadillo,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC3	HGNC	ENSG00000165309				174	0	0	46	27	36.9863
PTF1A	0	genome.wustl.edu	37	10	23482702	23482702	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	23482702	23482702	A	T	SNP	PTF1A	ENST00000376504	human	ensembl	74_37	+1	known	missense	c.854	p.D285V	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	PTF1A	HGNC	ENSG00000168267				310	0	0	166	98	37.1212
KIAA1217	0	genome.wustl.edu	37	10	24825774	24825774	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	24825774	24825774	C	T	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	silent	c.3486	p.H1162	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				109	0	0	67	44	39.6396
ENKUR	0	genome.wustl.edu	37	10	25273739	25273739	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	25273739	25273739	C	T	SNP	ENKUR	ENST00000331161	human	ensembl	74_37	-1	known	silent	c.690	p.L230	1.000	NULL	NULL	-	no_errors	ENKUR	HGNC	ENSG00000151023				65	0	0	25	16	39.0244
GPR158	0	genome.wustl.edu	37	10	25464593	25464593	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	25464593	25464593	G	A	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.244	p.V82M	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				81	0	0	41	15	26.7857
PTCHD3	0	genome.wustl.edu	37	10	27687378	27687378	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	27687378	27687378	T	C	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	missense	c.2149	p.T717A	0.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				44	0	0	14	5	26.3158
C10orf68	0	genome.wustl.edu	37	10	33134170	33134170	+	Splice_Site	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	33134170	33134170	G	A	SNP	C10orf68	ENST00000375025	human	ensembl	74_37	+1	known	splice_site	c.1274-1	e14-1	0.001	-	-	-	no_errors	C10orf68	HGNC	ENSG00000150076				9	0	0	11	5	31.25
ITGB1	0	genome.wustl.edu	37	10	33200928	33200928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	33200928	33200928	C	T	SNP	ITGB1	ENST00000374956	human	ensembl	74_37	-1	known	missense	c.1594	p.V532I	1.000	pirsf_Integrin_bsu,pfam_EGF_extracell,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB1	HGNC	ENSG00000150093				161	0	0	68	27	28.4211
PARD3	0	genome.wustl.edu	37	10	34400290	34400290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	34400290	34400290	C	T	SNP	PARD3	ENST00000374789	human	ensembl	74_37	-1	known	missense	c.3878	p.R1293Q	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498				69	0	0	62	6	8.82353
FZD8	0	genome.wustl.edu	37	10	35928906	35928906	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	35928906	35928906	G	A	SNP	FZD8	ENST00000374694	human	ensembl	74_37	-1	known	silent	c.1452	p.F484	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD8	HGNC	ENSG00000177283				36	0	0	30	16	34.7826
CCNYL2	0	genome.wustl.edu	37	10	42965637	42965637	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	42965637	42965637	G	T	SNP	CCNYL2	ENST00000483242	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	CCNYL2	HGNC	ENSG00000182632				23	0	0	24	4	14.2857
BMS1	0	genome.wustl.edu	37	10	43325839	43325839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	43325839	43325839	C	T	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	missense	c.3587	p.P1196L	1.000	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				77	0	0	44	30	40.5405
CSGALNACT2	0	genome.wustl.edu	37	10	43678785	43678785	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	43678785	43678785	G	A	SNP	CSGALNACT2	ENST00000374466	human	ensembl	74_37	+1	known	missense	c.1424	p.R475Q	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT2	HGNC	ENSG00000169826				193	0	0	87	67	43.5065
RASGEF1A	0	genome.wustl.edu	37	10	43701396	43701396	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	43701396	43701396	G	T	SNP	RASGEF1A	ENST00000395809	human	ensembl	74_37	-1	known	missense	c.169	p.L57I	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1A	HGNC	ENSG00000198915				41	0	0	24	14	36.8421
SYT15	0	genome.wustl.edu	37	10	46969272	46969272	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	46969272	46969272	C	T	SNP	SYT15	ENST00000374321	human	ensembl	74_37	-1	known	silent	c.189	p.P63	0.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT15	HGNC	ENSG00000204176				57	0	0	32	12	27.2727
RBP3	0	genome.wustl.edu	37	10	48388581	48388581	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	48388581	48388581	C	A	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	missense	c.2297	p.R766L	0.026	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618				43	0	0	22	18	45
FRMPD2	0	genome.wustl.edu	37	10	49409381	49409381	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	49409381	49409381	G	A	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	missense	c.1844	p.T615I	0.032	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324				138	0	0	60	35	36.8421
MAPK8	0	genome.wustl.edu	37	10	49635188	49635188	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	49635188	49635188	T	C	SNP	MAPK8	ENST00000360332	human	ensembl	74_37	+1	known	splice_site	c.1060+2	e9+2	1.000	-	-	-	no_errors	MAPK8	HGNC	ENSG00000107643				30	0	0	12	13	52
C10orf71	0	genome.wustl.edu	37	10	50530631	50530631	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	50530631	50530631	A	G	SNP	C10orf71	ENST00000374144	human	ensembl	74_37	+1	known	missense	c.41	p.D14G	0.993	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354				23	0	0	21	9	30
ERCC6	0	genome.wustl.edu	37	10	50680508	50680508	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	50680508	50680508	C	A	SNP	ERCC6	ENST00000355832	human	ensembl	74_37	-1	known	missense	c.2838	p.E946D	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830				138	0	0	75	21	21.875
PGBD3	0	genome.wustl.edu	37	10	50723502	50723502	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	50723502	50723502	A	G	SNP	PGBD3	ENST00000603152	human	ensembl	74_37	-1	known	silent	c.3063	p.H1021	0.098	NULL	NULL	-	no_errors	PGBD3	HGNC	ENSG00000243251				160	0	0	64	34	34.6939
OGDHL	0	genome.wustl.edu	37	10	50947717	50947717	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	50947717	50947717	A	G	SNP	OGDHL	ENST00000374103	human	ensembl	74_37	-1	known	missense	c.2309	p.M770T	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444				47	0	0	32	17	34.6939
OGDHL	0	genome.wustl.edu	37	10	50951942	50951942	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	50951942	50951942	G	A	SNP	OGDHL	ENST00000496884	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OGDHL	HGNC	ENSG00000197444				14	0	0	11	7	38.8889
OGDHL	0	genome.wustl.edu	37	10	50955200	50955200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	50955200	50955200	C	T	SNP	OGDHL	ENST00000374103	human	ensembl	74_37	-1	known	missense	c.1042	p.V348I	0.415	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444				112	0	0	65	39	37.5
AGAP6	0	genome.wustl.edu	37	10	51769483	51769483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	51769483	51769483	C	T	SNP	AGAP6	ENST00000374056	human	ensembl	74_37	+1	known	missense	c.1529	p.S510L	0.891	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP6	HGNC	ENSG00000204149				270	0	0	120	71	37.1728
FAM21A	0	genome.wustl.edu	37	10	51851949	51851949	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	51851949	51851949	G	A	SNP	FAM21A	ENST00000282633	human	ensembl	74_37	+1	known	missense	c.959	p.R320Q	0.000	NULL	NULL	-	no_errors	FAM21A	HGNC	ENSG00000099290				25	0	0	18	6	25
FAM21A	0	genome.wustl.edu	37	10	51889387	51889387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	51889387	51889387	C	T	SNP	FAM21A	ENST00000282633	human	ensembl	74_37	+1	known	missense	c.3296	p.A1099V	0.015	NULL	NULL	-	no_errors	FAM21A	HGNC	ENSG00000099290				9	0	0	3	3	50
MBL2	0	genome.wustl.edu	37	10	54527917	54527917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	54527917	54527917	C	T	SNP	MBL2	ENST00000373968	human	ensembl	74_37	-1	known	missense	c.727	p.V243I	0.016	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	MBL2	HGNC	ENSG00000165471				293	0	0	126	80	38.835
PCDH15	0	genome.wustl.edu	37	10	56138546	56138546	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	56138546	56138546	C	A	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.314	p.R105I	1.000	smart_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				129	0	0	56	29	34.1176
ANK3	0	genome.wustl.edu	37	10	61835941	61835941	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	61835941	61835941	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	silent	c.4698	p.D1566	0.984	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				270	0	0	99	66	40
ANK3	0	genome.wustl.edu	37	10	61955986	61955986	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	61955986	61955986	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	silent	c.1804	p.L602	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				32	0	0	18	9	33.3333
ANK3	0	genome.wustl.edu	37	10	62039340	62039340	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	62039340	62039340	G	T	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.172	p.L58I	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				164	0	0	60	52	46.4286
ZNF365	0	genome.wustl.edu	37	10	64148220	64148220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	64148220	64148220	G	A	SNP	ZNF365	ENST00000410046	human	ensembl	74_37	+1	known	missense	c.809	p.R270Q	1.000	NULL	NULL	-	no_errors	ZNF365	HGNC	ENSG00000138311				49	0	0	33	22	40
DNA2	0	genome.wustl.edu	37	10	70178861	70178861	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	70178861	70178861	A	G	SNP	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	missense	c.3155	p.V1052A	1.000	superfamily_P-loop_NTPase	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				68	0	0	32	10	23.8095
DNA2	0	genome.wustl.edu	37	10	70196956	70196956	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	70196956	70196956	T	C	SNP	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	silent	c.1716	p.E572	0.000	NULL	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				105	0	0	34	27	44.2623
DDX50	0	genome.wustl.edu	37	10	70706267	70706267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	70706267	70706267	G	A	SNP	DDX50	ENST00000373585	human	ensembl	74_37	+1	known	missense	c.2095	p.G699S	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625				93	0	0	53	36	40.4494
TYSND1	0	genome.wustl.edu	37	10	71902574	71902574	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	71902574	71902574	C	A	SNP	TYSND1	ENST00000287078	human	ensembl	74_37	-1	known	missense	c.1333	p.G445C	0.998	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,pirsf_Pept_S1A_Tysnd1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,pirsf_Pept_S1A_Tysnd1	-	no_errors	TYSND1	HGNC	ENSG00000156521				52	0	0	40	16	28.5714
UNC5B	0	genome.wustl.edu	37	10	73050709	73050709	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	73050709	73050709	G	A	SNP	UNC5B	ENST00000335350	human	ensembl	74_37	+1	known	silent	c.1137	p.G379	0.998	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Death_domain,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5B	HGNC	ENSG00000107731				285	0	0	152	113	42.6415
UNC5B	0	genome.wustl.edu	37	10	73056423	73056423	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	73056423	73056423	A	G	SNP	UNC5B	ENST00000335350	human	ensembl	74_37	+1	known	missense	c.2414	p.E805G	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Death_domain,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5B	HGNC	ENSG00000107731				89	0	0	53	25	32.0513
CDH23	0	genome.wustl.edu	37	10	73574991	73574991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	73574991	73574991	C	T	SNP	CDH23	ENST00000398788	human	ensembl	74_37	+1	known	missense	c.3301	p.R1101C	0.274	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				29	0	0	39	14	26.4151
PSAP	0	genome.wustl.edu	37	10	73587902	73587902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	73587902	73587902	C	T	SNP	PSAP	ENST00000394934	human	ensembl	74_37	-1	known	missense	c.589	p.V197I	0.996	pirsf_Saposin_chordata,pfam_SapB_1,superfamily_Saposin-like,smart_SaposinB,prints_Saposin,pfscan_SaposinB	pirsf_Saposin_chordata,pfam_SapB_1,pfam_SapB_2,pfam_SapA,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_errors	PSAP	HGNC	ENSG00000197746				151	0	0	64	32	33.3333
NUDT13	0	genome.wustl.edu	37	10	74884892	74884892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	74884892	74884892	G	A	SNP	NUDT13	ENST00000357321	human	ensembl	74_37	+1	known	missense	c.482	p.R161H	0.995	pfam_NADH_PPase-like_N,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,pfam_NADH_PPase-like_N,pfam_Znr_NADH_PPase,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT13	HGNC	ENSG00000166321				102	0	0	59	26	30.5882
USP54	0	genome.wustl.edu	37	10	75295986	75295986	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	75295986	75295986	G	T	SNP	USP54	ENST00000461520	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.005	-	-	-	no_errors	USP54	HGNC	ENSG00000166348				22	0	0	9	5	35.7143
AGAP5	0	genome.wustl.edu	37	10	75434595	75434595	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	75434595	75434595	G	A	SNP	AGAP5	ENST00000374094	human	ensembl	74_37	-1	known	missense	c.1823	p.A608V	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP5	HGNC	ENSG00000172650				143	0	0	91	47	34.058
KAT6B	0	genome.wustl.edu	37	10	76790222	76790222	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	76790222	76790222	A	G	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	silent	c.5640	p.P1880	0.882	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				218	1	0.456621	116	68	36.9565
KCNMA1	0	genome.wustl.edu	37	10	78708947	78708947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	78708947	78708947	G	A	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.2674	p.R892W	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				161	0	0	159	15	8.62069
KCNMA1	0	genome.wustl.edu	37	10	78943226	78943226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	78943226	78943226	G	A	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.761	p.T254M	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				52	0	0	34	23	40.3509
DLG5	0	genome.wustl.edu	37	10	79567627	79567627	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	79567627	79567627	G	A	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	missense	c.4723	p.R1575C	0.998	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				85	0	0	42	24	36.3636
SFTPD	0	genome.wustl.edu	37	10	81697823	81697823	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	81697823	81697823	C	T	SNP	SFTPD	ENST00000372292	human	ensembl	74_37	-1	known	missense	c.913	p.V305I	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,pfam_Surfac_D-trimer,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	SFTPD	HGNC	ENSG00000133661				204	0	0	92	63	40.6452
NRG3	0	genome.wustl.edu	37	10	83635495	83635495	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	83635495	83635495	C	A	SNP	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	silent	c.399	p.S133	0.839	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737				44	0	0	49	6	10.9091
GRID1	0	genome.wustl.edu	37	10	87484202	87484202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	87484202	87484202	C	T	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	missense	c.1765	p.V589M	0.963	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771				60	0	0	38	22	36.6667
LARP4B	0	genome.wustl.edu	37	10	875436	875436	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	875436	875436	C	T	SNP	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	silent	c.1014	p.A338	0.012	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				73	0	0	25	19	43.1818
WAPAL	0	genome.wustl.edu	37	10	88227089	88227089	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	88227089	88227089	G	A	SNP	WAPAL	ENST00000298767	human	ensembl	74_37	-1	known	nonsense	c.2317	p.R773*	1.000	pfam_WAPL_prot,superfamily_ARM-type_fold	pfam_WAPL_prot,superfamily_ARM-type_fold	-	no_errors	WAPAL	HGNC	ENSG00000062650				76	0	0	27	13	32.5
MMRN2	0	genome.wustl.edu	37	10	88702972	88702972	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	88702972	88702972	G	A	SNP	MMRN2	ENST00000372027	human	ensembl	74_37	-1	known	silent	c.1569	p.D523	0.000	superfamily_tRNA-bd_arm	pfam_C1q,pfam_EMI_domain,superfamily_Tumour_necrosis_fac-like_dom,superfamily_tRNA-bd_arm,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	MMRN2	HGNC	ENSG00000173269				47	0	0	25	29	53.7037
PTEN	0	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	89717672	89717672	C	T	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	nonsense	c.697	p.R233*	0.984	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				97	0	0	48	26	35.1351
ANKRD22	0	genome.wustl.edu	37	10	90591731	90591731	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	90591731	90591731	A	C	SNP	ANKRD22	ENST00000371930	human	ensembl	74_37	-1	known	missense	c.74	p.V25G	0.023	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD22	HGNC	ENSG00000152766				384	0	0	222	78	26
CYP26A1	0	genome.wustl.edu	37	10	94836945	94836945	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	94836945	94836945	G	A	SNP	CYP26A1	ENST00000224356	human	ensembl	74_37	+1	known	missense	c.1378	p.A460T	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP26A1	HGNC	ENSG00000095596				69	0	0	21	11	34.375
RBP4	0	genome.wustl.edu	37	10	95353732	95353732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	95353732	95353732	C	T	SNP	RBP4	ENST00000371464	human	ensembl	74_37	-1	known	missense	c.416	p.R139H	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,pirsf_Lipocalin_ApoD,prints_Retinol-bd/Purpurin	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,pirsf_Lipocalin_ApoD,prints_Retinol-bd/Purpurin,prints_Lipocalin	-	no_errors	RBP4	HGNC	ENSG00000138207				135	0	0	80	48	37.5
C10orf12	0	genome.wustl.edu	37	10	98742990	98742990	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	98742990	98742990	G	T	SNP	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	nonsense	c.1843	p.G615*	0.015	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640				102	0	0	72	42	36.8421
SLIT1	0	genome.wustl.edu	37	10	98807476	98807476	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	98807476	98807476	A	G	SNP	SLIT1	ENST00000266058	human	ensembl	74_37	-1	known	silent	c.1605	p.P535	0.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EG-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122				131	0	0	76	19	20
RRP12	0	genome.wustl.edu	37	10	99144989	99144989	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	99144989	99144989	T	G	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	missense	c.1142	p.E381A	1.000	superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				123	0	0	102	10	8.92857
GOLGA7B	0	genome.wustl.edu	37	10	99619287	99619287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	99619287	99619287	G	A	SNP	GOLGA7B	ENST00000370602	human	ensembl	74_37	+1	known	missense	c.85	p.D29N	1.000	pfam_Golgin_A_7/ERF4	pfam_Golgin_A_7/ERF4	-	no_errors	GOLGA7B	HGNC	ENSG00000155265				71	0	0	56	6	9.67742
GOLGA7B	0	genome.wustl.edu	37	10	99623791	99623791	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	99623791	99623791	C	T	SNP	GOLGA7B	ENST00000370602	human	ensembl	74_37	+1	known	silent	c.243	p.C81	0.959	pfam_Golgin_A_7/ERF4	pfam_Golgin_A_7/ERF4	-	no_errors	GOLGA7B	HGNC	ENSG00000155265				69	0	0	46	26	36.1111
TRPC6	0	genome.wustl.edu	37	11	101359689	101359689	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	101359689	101359689	G	A	SNP	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	silent	c.1272	p.Y424	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672				99	0	0	61	26	29.8851
MUC6	0	genome.wustl.edu	37	11	1019287	1019287	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1019287	1019287	T	C	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.4018	p.S1340G	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				53	0	0	37	21	36.2069
MUC6	0	genome.wustl.edu	37	11	1020720	1020720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1020720	1020720	G	A	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.3604	p.P1202S	0.002	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				127	0	0	70	54	43.5484
BIRC3	0	genome.wustl.edu	37	11	102195668	102195668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	102195668	102195668	C	T	SNP	BIRC3	ENST00000263464	human	ensembl	74_37	+1	known	missense	c.428	p.S143L	0.001	NULL	pfam_BIR,pfam_CARD,superfamily_DEATH-like_dom,smart_BIR,smart_CARD,smart_Znf_RING,pfscan_CARD,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC3	HGNC	ENSG00000023445				247	0	0	96	82	46.0674
MUC6	0	genome.wustl.edu	37	11	1024088	1024088	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1024088	1024088	A	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.3241	p.Y1081N	0.999	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				42	0	0	27	19	41.3043
MMP8	0	genome.wustl.edu	37	11	102585357	102585357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	102585357	102585357	C	T	SNP	MMP8	ENST00000236826	human	ensembl	74_37	-1	known	missense	c.1120	p.V374I	0.387	superfamily_Hemopexin-like_dom,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP8	HGNC	ENSG00000118113				62	0	0	28	11	28.2051
MUC6	0	genome.wustl.edu	37	11	1031855	1031855	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1031855	1031855	A	G	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.314	p.V105A	0.005	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				33	0	0	20	10	33.3333
CASP5	0	genome.wustl.edu	37	11	104871014	104871014	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	104871014	104871014	A	G	SNP	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	missense	c.965	p.V322A	1.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757				150	0	0	86	10	10.4167
MUC2	0	genome.wustl.edu	37	11	1085791	1085791	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1085791	1085791	C	T	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	silent	c.2712	p.T904	0.151	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				156	0	0	88	32	26.6667
MUC2	0	genome.wustl.edu	37	11	1087532	1087532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1087532	1087532	G	A	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	missense	c.3283	p.V1095M	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				36	0	0	33	11	25
FDXACB1	0	genome.wustl.edu	37	11	111747642	111747642	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	111747642	111747642	C	T	SNP	FDXACB1	ENST00000260257	human	ensembl	74_37	-1	known	nonsense	c.423	p.W141*	1.000	pfam_DUF2431	pfam_DUF2431,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd	-	no_errors	FDXACB1	HGNC	ENSG00000255561				21	0	0	10	10	50
FDXACB1	0	genome.wustl.edu	37	11	111749409	111749409	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	111749409	111749409	C	T	SNP	FDXACB1	ENST00000260257	human	ensembl	74_37	-1	known	missense	c.200	p.C67Y	1.000	pfam_DUF2431	pfam_DUF2431,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd	-	no_errors	FDXACB1	HGNC	ENSG00000255561				20	0	0	12	5	29.4118
GALNT18	0	genome.wustl.edu	37	11	11314737	11314737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	11314737	11314737	C	T	SNP	GALNT18	ENST00000227756	human	ensembl	74_37	-1	known	missense	c.1516	p.V506M	0.999	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT18	HGNC	ENSG00000110328				57	0	0	28	17	37.7778
ZW10	0	genome.wustl.edu	37	11	113614710	113614710	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	113614710	113614710	T	A	SNP	ZW10	ENST00000200135	human	ensembl	74_37	-1	known	missense	c.1325	p.D442V	0.017	pfam_RZZ-complex_Zw10	pfam_RZZ-complex_Zw10	-	no_errors	ZW10	HGNC	ENSG00000086827				99	0	0	30	13	30.2326
APOA4	0	genome.wustl.edu	37	11	116692257	116692257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	116692257	116692257	C	T	SNP	APOA4	ENST00000357780	human	ensembl	74_37	-1	known	missense	c.517	p.D173N	0.001	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244				167	0	0	101	42	29.3706
APOA1	0	genome.wustl.edu	37	11	116707727	116707727	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	116707727	116707727	T	C	SNP	APOA1	ENST00000236850	human	ensembl	74_37	-1	known	missense	c.190	p.K64E	0.939	NULL	pfam_ApoA1_A4_E	-	no_errors	APOA1	HGNC	ENSG00000118137				108	0	0	70	38	35.1852
SIK3	0	genome.wustl.edu	37	11	116968908	116968908	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	116968908	116968908	C	T	SNP	SIK3	ENST00000375300	human	ensembl	74_37	-1	known	missense	c.224	p.G75D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SIK3	HGNC	ENSG00000160584				10	0	0	23	5	17.8571
CEP164	0	genome.wustl.edu	37	11	117214899	117214899	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	117214899	117214899	C	T	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	missense	c.100	p.R34W	0.052	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				21	0	0	20	3	13.0435
DSCAML1	0	genome.wustl.edu	37	11	117309654	117309654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	117309654	117309654	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.4370	p.S1457L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				39	0	0	18	9	33.3333
TMPRSS4	0	genome.wustl.edu	37	11	117975456	117975456	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	117975456	117975456	G	T	SNP	TMPRSS4	ENST00000437212	human	ensembl	74_37	+1	known	missense	c.361	p.G121W	0.000	superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS4	HGNC	ENSG00000137648				85	0	0	51	11	17.7419
KMT2A	0	genome.wustl.edu	37	11	118376815	118376815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	118376815	118376815	C	T	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.10199	p.P3400L	0.996	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				176	0	0	94	53	36.0544
KMT2A	0	genome.wustl.edu	37	11	118392684	118392684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	118392684	118392684	C	T	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.11707	p.R3903C	1.000	pfam_SET_dom,smart_SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				85	0	0	37	23	38.3333
TMEM25	0	genome.wustl.edu	37	11	118403005	118403005	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	118403005	118403005	C	T	SNP	TMEM25	ENST00000533102	human	ensembl	74_37	+1	known	silent	c.211	p.L71	0.997	pfam_CD80_C2-set,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfscan_Ig-like_dom	-	no_errors	TMEM25	HGNC	ENSG00000149582				72	0	0	34	26	43.3333
NLRX1	0	genome.wustl.edu	37	11	119044487	119044487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	119044487	119044487	C	T	SNP	NLRX1	ENST00000292199	human	ensembl	74_37	+1	known	missense	c.529	p.R177C	0.997	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703				55	0	0	33	26	44.0678
OAF	0	genome.wustl.edu	37	11	120082132	120082132	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	120082132	120082132	C	T	SNP	OAF	ENST00000328965	human	ensembl	74_37	+1	known	nonsense	c.145	p.Q49*	1.000	NULL	NULL	-	no_errors	OAF	HGNC	ENSG00000184232				11	0	0	9	10	52.6316
ARHGEF12	0	genome.wustl.edu	37	11	120350888	120350888	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	120350888	120350888	G	A	SNP	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	missense	c.3929	p.R1310Q	1.000	NULL	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914				161	0	0	74	46	38.3333
GRIK4	0	genome.wustl.edu	37	11	120856905	120856905	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	120856905	120856905	C	T	SNP	GRIK4	ENST00000527524	human	ensembl	74_37	+1	known	missense	c.2807	p.S936L	0.993	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK4	HGNC	ENSG00000149403				14	0	0	7	3	30
MUC5AC	0	genome.wustl.edu	37	11	1216434	1216434	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1216434	1216434	T	C	SNP	MUC5AC	ENST00000358378	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	MUC5AC	HGNC	ENSG00000215182				54	0	0	27	16	37.2093
GRAMD1B	0	genome.wustl.edu	37	11	123448200	123448200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	123448200	123448200	C	T	SNP	GRAMD1B	ENST00000322282	human	ensembl	74_37	+1	known	missense	c.149	p.S50L	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171				13	0	0	7	3	30
GRAMD1B	0	genome.wustl.edu	37	11	123484310	123484310	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	123484310	123484310	G	A	SNP	GRAMD1B	ENST00000322282	human	ensembl	74_37	+1	known	missense	c.1742	p.S581N	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171				69	0	0	25	15	37.5
ZNF202	0	genome.wustl.edu	37	11	123597198	123597198	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	123597198	123597198	T	C	SNP	ZNF202	ENST00000336139	human	ensembl	74_37	-1	known	missense	c.1454	p.D485G	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF202	HGNC	ENSG00000166261				153	0	0	56	29	34.1176
OR10G4	0	genome.wustl.edu	37	11	123886751	123886751	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	123886751	123886751	T	C	SNP	OR10G4	ENST00000320891	human	ensembl	74_37	+1	known	missense	c.470	p.V157A	0.016	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737				210	0	0	112	76	40.4255
OR8B4	0	genome.wustl.edu	37	11	124294519	124294519	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	124294519	124294519	A	G	SNP	OR8B4	ENST00000356130	human	ensembl	74_37	-1	known	silent	c.249	p.N83	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR8B4	HGNC	ENSG00000198657				92	0	0	38	27	41.5385
ROBO3	0	genome.wustl.edu	37	11	124738881	124738881	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	124738881	124738881	G	A	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	missense	c.344	p.R115H	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134				15	0	0	5	7	58.3333
HEPN1	0	genome.wustl.edu	37	11	124789773	124789773	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	124789773	124789773	T	C	SNP	HEPN1	ENST00000408930	human	ensembl	74_37	+1	known	missense	c.127	p.S43P	0.004	NULL	NULL	-	no_errors	HEPN1	HGNC	ENSG00000221932				93	0	0	30	10	25
MUC5B	0	genome.wustl.edu	37	11	1253994	1253994	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1253994	1253994	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.2068	p.V690I	0.722	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				17	0	0	9	11	55
MUC5B	0	genome.wustl.edu	37	11	1257653	1257653	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1257653	1257653	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.2927	p.A976V	0.017	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				60	0	0	35	17	32.6923
SRPR	0	genome.wustl.edu	37	11	126137069	126137069	+	Splice_Site	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	126137069	126137069	C	T	SNP	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	splice_site	c.526+1	e4+1	1.000	-	-	-	no_errors	SRPR	HGNC	ENSG00000182934				296	0	0	151	34	18.3784
MUC5B	0	genome.wustl.edu	37	11	1265147	1265147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1265147	1265147	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.7046	p.A2349V	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				52	0	0	44	7	13.7255
MUC5B	0	genome.wustl.edu	37	11	1265962	1265962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1265962	1265962	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.7861	p.A2621T	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				174	0	0	109	85	43.8144
ETS1	0	genome.wustl.edu	37	11	128332264	128332264	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	128332264	128332264	C	T	SNP	ETS1	ENST00000392668	human	ensembl	74_37	-1	known	missense	c.1450	p.D484N	0.999	pirsf_Transform_prot_C-ets	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_Transform_prot_C-ets,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETS1	HGNC	ENSG00000134954				45	0	0	20	5	20
ARHGAP32	0	genome.wustl.edu	37	11	128839759	128839759	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	128839759	128839759	G	A	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	silent	c.5307	p.V1769	0.021	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				127	0	0	83	9	9.78261
ADAMTS15	0	genome.wustl.edu	37	11	130332061	130332061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	130332061	130332061	G	A	SNP	ADAMTS15	ENST00000299164	human	ensembl	74_37	+1	known	missense	c.1170	p.M390I	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS,prints_Pept_M12B_ADAM-TS8	-	no_errors	ADAMTS15	HGNC	ENSG00000166106				115	0	0	66	32	32.6531
TOLLIP	0	genome.wustl.edu	37	11	1311503	1311503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1311503	1311503	G	A	SNP	TOLLIP	ENST00000317204	human	ensembl	74_37	-1	known	missense	c.320	p.T107M	0.993	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_CUE,pfam_C2_dom,superfamily_C2_dom,superfamily_UBA-like,smart_C2_dom,smart_CUE,pfscan_CUE	-	no_errors	TOLLIP	HGNC	ENSG00000078902				45	0	0	24	17	41.4634
NTM	0	genome.wustl.edu	37	11	132204993	132204993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	132204993	132204993	G	A	SNP	NTM	ENST00000539799	human	ensembl	74_37	+1	known	missense	c.1021	p.V341I	0.009	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NTM	HGNC	ENSG00000182667				112	0	0	114	7	5.78512
GLB1L3	0	genome.wustl.edu	37	11	134147250	134147250	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	134147250	134147250	C	T	SNP	GLB1L3	ENST00000431683	human	ensembl	74_37	+1	known	silent	c.54	p.G18	0.011	NULL	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105				108	0	0	51	9	15
B3GAT1	0	genome.wustl.edu	37	11	134253759	134253759	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	134253759	134253759	C	T	SNP	B3GAT1	ENST00000537389	human	ensembl	74_37	-1	known	missense	c.475	p.V159M	1.000	pfam_Glyco_trans_43	pfam_Glyco_trans_43	-	no_errors	B3GAT1	HGNC	ENSG00000109956				18	0	0	17	4	19.0476
B3GAT1	0	genome.wustl.edu	37	11	134253872	134253872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	134253872	134253872	G	A	SNP	B3GAT1	ENST00000537389	human	ensembl	74_37	-1	known	missense	c.362	p.T121M	1.000	pfam_Glyco_trans_43	pfam_Glyco_trans_43	-	no_errors	B3GAT1	HGNC	ENSG00000109956				23	0	0	25	6	19.3548
PDE3B	0	genome.wustl.edu	37	11	14666165	14666165	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	14666165	14666165	G	T	SNP	PDE3B	ENST00000282096	human	ensembl	74_37	+1	known	missense	c.544	p.G182W	0.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270				14	0	0	15	4	21.0526
INSC	0	genome.wustl.edu	37	11	15260573	15260573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	15260573	15260573	G	A	SNP	INSC	ENST00000379554	human	ensembl	74_37	+1	known	missense	c.1487	p.R496H	0.998	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	INSC	HGNC	ENSG00000188487				49	0	0	24	25	51.0204
PIK3C2A	0	genome.wustl.edu	37	11	17158165	17158165	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	17158165	17158165	T	G	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	missense	c.1712	p.H571P	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				62	0	0	51	4	7.27273
KCNC1	0	genome.wustl.edu	37	11	17758117	17758117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	17758117	17758117	C	T	SNP	KCNC1	ENST00000265969	human	ensembl	74_37	+1	known	missense	c.568	p.R190W	1.000	prints_K_chnl,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159				13	0	0	4	9	69.2308
SAAL1	0	genome.wustl.edu	37	11	18103046	18103046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	18103046	18103046	G	A	SNP	SAAL1	ENST00000524803	human	ensembl	74_37	-1	known	missense	c.1244	p.T415M	0.011	NULL	superfamily_ARM-type_fold	-	no_errors	SAAL1	HGNC	ENSG00000166788				95	0	0	27	22	44.898
TNNT3	0	genome.wustl.edu	37	11	1955032	1955032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1955032	1955032	G	A	SNP	TNNT3	ENST00000397301	human	ensembl	74_37	+1	known	missense	c.286	p.E96K	1.000	pfam_Troponin	pfam_Troponin	-	no_errors	TNNT3	HGNC	ENSG00000130595				85	0	0	49	35	41.6667
ODF3	0	genome.wustl.edu	37	11	199980	199980	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	199980	199980	T	C	SNP	ODF3	ENST00000325113	human	ensembl	74_37	+1	known	missense	c.712	p.F238L	0.997	pfam_SHIPPO-rpt	pfam_SHIPPO-rpt	-	no_errors	ODF3	HGNC	ENSG00000177947				54	0	0	28	34	54.8387
LUZP2	0	genome.wustl.edu	37	11	24750763	24750763	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	24750763	24750763	G	A	SNP	LUZP2	ENST00000336930	human	ensembl	74_37	+1	known	silent	c.111	p.E37	0.998	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398				91	0	0	37	20	35.0877
PSMD13	0	genome.wustl.edu	37	11	251578	251578	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	251578	251578	A	G	SNP	PSMD13	ENST00000431206	human	ensembl	74_37	+1	known	silent	c.876	p.Q292	1.000	pfam_PCI_dom,smart_PCI_dom	pfam_PCI_dom,smart_PCI_dom	-	no_errors	PSMD13	HGNC	ENSG00000185627				35	0	0	25	15	37.5
MUC15	0	genome.wustl.edu	37	11	26587274	26587274	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	26587274	26587274	A	T	SNP	MUC15	ENST00000436318	human	ensembl	74_37	-1	known	missense	c.213	p.N71K	0.000	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550				86	0	0	39	25	39.0625
LIN7C	0	genome.wustl.edu	37	11	27523455	27523455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	27523455	27523455	G	A	SNP	LIN7C	ENST00000278193	human	ensembl	74_37	-1	known	missense	c.50	p.A17V	1.000	pfam_L27_C,smart_L27,pirsf_Lin-7_homologue,pfscan_L27	pfam_PDZ,pfam_L27_C,superfamily_PDZ,smart_L27,smart_PDZ,pirsf_Lin-7_homologue,pfscan_L27,pfscan_PDZ	-	no_errors	LIN7C	HGNC	ENSG00000148943				62	0	0	16	15	48.3871
BDNF	0	genome.wustl.edu	37	11	27679877	27679877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	27679877	27679877	G	A	SNP	BDNF	ENST00000438929	human	ensembl	74_37	-1	known	missense	c.481	p.P161S	0.999	NULL	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Brain-der_neurotrophic_factor,prints_Nerve_growth_factor-rel	-	no_errors	BDNF	HGNC	ENSG00000176697				155	0	0	104	12	10.3448
NLRP6	0	genome.wustl.edu	37	11	279866	279866	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	279866	279866	G	A	SNP	NLRP6	ENST00000312165	human	ensembl	74_37	+1	known	missense	c.343	p.V115M	0.378	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP6	HGNC	ENSG00000174885				19	0	0	16	6	27.2727
CARS	0	genome.wustl.edu	37	11	3040468	3040468	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	3040468	3040468	C	A	SNP	CARS	ENST00000380525	human	ensembl	74_37	-1	known	silent	c.1296	p.S432	0.003	pfam_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS	HGNC	ENSG00000110619				157	0	0	80	49	37.9845
EIF3M	0	genome.wustl.edu	37	11	32623875	32623875	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	32623875	32623875	A	G	SNP	EIF3M	ENST00000531120	human	ensembl	74_37	+1	known	missense	c.1055	p.D352G	1.000	smart_PCI_dom	pfam_PCI_dom,superfamily_ARM-type_fold,smart_PCI_dom	-	no_errors	EIF3M	HGNC	ENSG00000149100				76	0	0	29	26	47.2727
QSER1	0	genome.wustl.edu	37	11	32956107	32956107	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	32956107	32956107	A	G	SNP	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	silent	c.2916	p.Q972	0.814	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				93	0	0	56	7	11.1111
CSTF3	0	genome.wustl.edu	37	11	33108546	33108546	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	33108546	33108546	G	A	SNP	CSTF3	ENST00000323959	human	ensembl	74_37	-1	known	nonsense	c.1783	p.R595*	1.000	pfam_Suf	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102				303	0	0	126	73	36.6834
KIAA1549L	0	genome.wustl.edu	37	11	33640107	33640107	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	33640107	33640107	A	G	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	missense	c.4435	p.S1479G	1.000	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427				23	0	0	16	6	27.2727
CAT	0	genome.wustl.edu	37	11	34493032	34493032	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	34493032	34493032	C	T	SNP	CAT	ENST00000534710	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CAT	HGNC	ENSG00000121691				35	0	0	22	12	35.2941
CHRNA10	0	genome.wustl.edu	37	11	3691097	3691097	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	3691097	3691097	T	C	SNP	CHRNA10	ENST00000250699	human	ensembl	74_37	-1	known	missense	c.136	p.R46G	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA10	HGNC	ENSG00000129749				137	0	0	97	7	6.73077
NUP98	0	genome.wustl.edu	37	11	3744675	3744675	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	3744675	3744675	G	T	SNP	NUP98	ENST00000324932	human	ensembl	74_37	-1	known	missense	c.1858	p.L620I	0.996	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713				37	0	0	17	11	39.2857
PGAP2	0	genome.wustl.edu	37	11	3838582	3838582	+	Splice_Site	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	3838582	3838582	G	T	SNP	PGAP2	ENST00000278243	human	ensembl	74_37	+1	known	splice_site	c.166-1	e2-1	0.932	-	-	-	no_errors	PGAP2	HGNC	ENSG00000148985				118	0	0	57	36	38.7097
PGAP2	0	genome.wustl.edu	37	11	3846609	3846609	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	3846609	3846609	C	T	SNP	PGAP2	ENST00000278243	human	ensembl	74_37	+1	known	missense	c.869	p.A290V	1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	PGAP2	HGNC	ENSG00000148985				52	0	0	22	12	35.2941
TTC17	0	genome.wustl.edu	37	11	43428962	43428962	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	43428962	43428962	A	G	SNP	TTC17	ENST00000039989	human	ensembl	74_37	+1	known	silent	c.1899	p.G633	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841				47	0	0	14	11	44
HSD17B12	0	genome.wustl.edu	37	11	43876274	43876274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	43876274	43876274	C	T	SNP	HSD17B12	ENST00000278353	human	ensembl	74_37	+1	known	missense	c.694	p.P232S	1.000	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B12	HGNC	ENSG00000149084				154	0	0	87	42	32.5581
OR52K2	0	genome.wustl.edu	37	11	4471034	4471034	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	4471034	4471034	G	A	SNP	OR52K2	ENST00000325719	human	ensembl	74_37	+1	known	silent	c.465	p.V155	0.985	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52K2	HGNC	ENSG00000181963				110	0	0	87	7	7.44681
SLC35C1	0	genome.wustl.edu	37	11	45832837	45832837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	45832837	45832837	C	T	SNP	SLC35C1	ENST00000314134	human	ensembl	74_37	+1	known	missense	c.1046	p.P349L	1.000	NULL	pfam_Tpt_PEP_trans_dom,pfam_UAA,pfam_DMT	-	no_errors	SLC35C1	HGNC	ENSG00000181830				29	0	0	14	9	39.1304
CRY2	0	genome.wustl.edu	37	11	45891725	45891725	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	45891725	45891725	G	A	SNP	CRY2	ENST00000443527	human	ensembl	74_37	+1	known	missense	c.1379	p.R460H	1.000	pfam_Photolyase_FAD-bd/Cryptochr_C,superfamily_Photolyase_FAD-bd/Cryptochr_C	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY2	HGNC	ENSG00000121671				96	0	0	48	35	42.1687
AMBRA1	0	genome.wustl.edu	37	11	46567255	46567255	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	46567255	46567255	C	T	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	silent	c.450	p.Q150	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497				79	0	0	54	26	32.5
ARFGAP2	0	genome.wustl.edu	37	11	47196629	47196629	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	47196629	47196629	A	G	SNP	ARFGAP2	ENST00000524782	human	ensembl	74_37	-1	known	silent	c.417	p.S139	0.078	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182				396	0	0	202	97	32.4415
MADD	0	genome.wustl.edu	37	11	47317472	47317472	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	47317472	47317472	C	A	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	missense	c.3625	p.L1209I	0.993	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				140	1	0.70922	101	26	20.4724
PTPMT1	0	genome.wustl.edu	37	11	47593160	47593160	+	Silent	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	47593160	47593160	T	G	SNP	PTPMT1	ENST00000326674	human	ensembl	74_37	+1	novel	silent	c.585	p.T195	0.001	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTPMT1	HGNC	ENSG00000110536				171	0	0	86	35	28.9256
MTCH2	0	genome.wustl.edu	37	11	47664026	47664026	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	47664026	47664026	C	A	SNP	MTCH2	ENST00000533571	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MTCH2	HGNC	ENSG00000109919				12	0	0	11	6	35.2941
FNBP4	0	genome.wustl.edu	37	11	47776158	47776158	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	47776158	47776158	G	A	SNP	FNBP4	ENST00000263773	human	ensembl	74_37	-1	known	silent	c.372	p.S124	0.063	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	FNBP4	HGNC	ENSG00000109920				105	0	0	74	26	26
PTPRJ	0	genome.wustl.edu	37	11	48188902	48188902	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	48188902	48188902	T	C	SNP	PTPRJ	ENST00000418331	human	ensembl	74_37	+1	known	silent	c.4002	p.G1334	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177				73	0	0	46	26	36.1111
OR4C12	0	genome.wustl.edu	37	11	50003277	50003277	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	50003277	50003277	A	G	SNP	OR4C12	ENST00000335238	human	ensembl	74_37	-1	known	missense	c.761	p.F254S	0.775	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4C12	HGNC	ENSG00000221954				58	0	0	45	5	10
OR51M1	0	genome.wustl.edu	37	11	5411436	5411436	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	5411436	5411436	C	A	SNP	OR51M1	ENST00000328611	human	ensembl	74_37	+1	known	missense	c.808	p.L270M	0.093	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51M1	HGNC	ENSG00000184698				72	0	0	40	10	20
TRIM48	0	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	55035844	55035844	T	C	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	missense	c.574	p.Y192H	0.183	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244				87	0	0	56	14	20
UBQLNL	0	genome.wustl.edu	37	11	5537100	5537100	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	5537100	5537100	A	G	SNP	UBQLNL	ENST00000380184	human	ensembl	74_37	-1	putative	missense	c.572	p.M191T	0.959	NULL	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLNL	HGNC	ENSG00000175518				185	0	0	65	27	29.3478
OR5D14	0	genome.wustl.edu	37	11	55563737	55563737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	55563737	55563737	C	T	SNP	OR5D14	ENST00000335605	human	ensembl	74_37	+1	known	missense	c.706	p.R236C	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113				124	0	0	71	43	37.7193
OR5AS1	0	genome.wustl.edu	37	11	55798109	55798109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	55798109	55798109	G	A	SNP	OR5AS1	ENST00000313555	human	ensembl	74_37	+1	known	missense	c.215	p.S72N	0.016	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785				70	0	0	17	12	41.3793
OR8J3	0	genome.wustl.edu	37	11	55905191	55905191	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	55905191	55905191	C	A	SNP	OR8J3	ENST00000301529	human	ensembl	74_37	-1	known	missense	c.4	p.A2S	0.141	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J3	HGNC	ENSG00000167822				100	0	0	72	35	32.7103
OR8H1	0	genome.wustl.edu	37	11	56057608	56057608	+	Silent	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	56057608	56057608	T	G	SNP	OR8H1	ENST00000313022	human	ensembl	74_37	-1	known	silent	c.931	p.R311	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H1	HGNC	ENSG00000181693				141	0	0	66	13	16.4557
OR8H1	0	genome.wustl.edu	37	11	56057978	56057978	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	56057978	56057978	G	T	SNP	OR8H1	ENST00000313022	human	ensembl	74_37	-1	known	silent	c.561	p.S187	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H1	HGNC	ENSG00000181693				116	0	0	40	31	43.662
OR8J1	0	genome.wustl.edu	37	11	56128498	56128498	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	56128498	56128498	A	G	SNP	OR8J1	ENST00000303039	human	ensembl	74_37	+1	known	missense	c.776	p.Y259C	0.416	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J1	HGNC	ENSG00000172487				143	0	0	92	5	5.15464
OR5M8	0	genome.wustl.edu	37	11	56258674	56258674	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	56258674	56258674	A	G	SNP	OR5M8	ENST00000327216	human	ensembl	74_37	-1	known	missense	c.173	p.M58T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M8	HGNC	ENSG00000181371				132	0	0	78	53	40.458
PRG3	0	genome.wustl.edu	37	11	57147109	57147109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	57147109	57147109	G	A	SNP	PRG3	ENST00000287143	human	ensembl	74_37	-1	known	missense	c.233	p.A78V	0.001	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_Eosinophil_major_basic	-	no_errors	PRG3	HGNC	ENSG00000156575				134	0	0	63	32	33.6842
RTN4RL2	0	genome.wustl.edu	37	11	57235267	57235267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	57235267	57235267	C	T	SNP	RTN4RL2	ENST00000335099	human	ensembl	74_37	+1	known	missense	c.217	p.R73C	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	RTN4RL2	HGNC	ENSG00000186907				164	0	0	190	17	8.21256
FAM111B	0	genome.wustl.edu	37	11	58892109	58892109	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	58892109	58892109	A	G	SNP	FAM111B	ENST00000343597	human	ensembl	74_37	+1	known	missense	c.539	p.N180S	0.000	NULL	superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111B	HGNC	ENSG00000189057				95	0	0	26	26	50
FAM111A	0	genome.wustl.edu	37	11	58919526	58919526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	58919526	58919526	C	T	SNP	FAM111A	ENST00000361723	human	ensembl	74_37	+1	known	missense	c.385	p.R129C	0.000	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111A	HGNC	ENSG00000166801				97	0	0	46	24	34.2857
OSBP	0	genome.wustl.edu	37	11	59361175	59361175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	59361175	59361175	G	A	SNP	OSBP	ENST00000263847	human	ensembl	74_37	-1	known	missense	c.1580	p.A527V	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP	HGNC	ENSG00000110048				105	0	0	70	4	5.40541
MS4A14	0	genome.wustl.edu	37	11	60183217	60183217	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	60183217	60183217	C	A	SNP	MS4A14	ENST00000300187	human	ensembl	74_37	+1	known	missense	c.776	p.P259H	0.001	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928				102	0	0	62	5	7.46269
PRPF19	0	genome.wustl.edu	37	11	60670961	60670961	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	60670961	60670961	C	T	SNP	PRPF19	ENST00000227524	human	ensembl	74_37	-1	known	silent	c.216	p.P72	0.476	pfam_Pre-mRNA_splic_Prp19	pfam_WD40_repeat,pfam_Pre-mRNA_splic_Prp19,pfam_Ubox_domain,superfamily_WD40_repeat_dom,smart_Ubox_domain,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF19	HGNC	ENSG00000110107				36	0	0	17	10	37.037
PHRF1	0	genome.wustl.edu	37	11	607923	607923	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	607923	607923	A	G	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.2467	p.K823E	0.983	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				153	0	0	76	28	26.9231
VWCE	0	genome.wustl.edu	37	11	61048617	61048617	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	61048617	61048617	C	A	SNP	VWCE	ENST00000335613	human	ensembl	74_37	-1	known	missense	c.878	p.R293L	0.994	NULL	pfam_VWF_C,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWF_C,smart_VWC_out,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	VWCE	HGNC	ENSG00000167992				63	0	0	50	30	37.5
DDB1	0	genome.wustl.edu	37	11	61070548	61070548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	61070548	61070548	G	A	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	missense	c.2912	p.A971V	1.000	pfam_Cleavage/polyA-sp_fac_asu_C	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986				151	0	0	77	43	35.8333
TMEM138	0	genome.wustl.edu	37	11	61133581	61133581	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	61133581	61133581	G	A	SNP	TMEM138	ENST00000278826	human	ensembl	74_37	+1	known	missense	c.193	p.V65I	1.000	NULL	NULL	-	no_errors	TMEM138	HGNC	ENSG00000149483				169	0	0	67	38	36.1905
FTH1	0	genome.wustl.edu	37	11	61727260	61727260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	61727260	61727260	C	T	SNP	FTH1	ENST00000529191	human	ensembl	74_37	-1	putative	missense	c.254	p.S85N	0.526	NULL	superfamily_Ferritin-like_SF	-	no_errors	FTH1	HGNC	ENSG00000167996				14	0	0	1	4	80
INCENP	0	genome.wustl.edu	37	11	61908981	61908981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	61908981	61908981	G	A	SNP	INCENP	ENST00000394818	human	ensembl	74_37	+1	known	missense	c.1603	p.V535I	0.995	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503				228	0	0	236	18	7.08661
AHNAK	0	genome.wustl.edu	37	11	62298496	62298496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	62298496	62298496	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.3393	p.M1131I	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				244	0	0	115	40	25.8065
TUT1	0	genome.wustl.edu	37	11	62348927	62348927	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	62348927	62348927	C	T	SNP	TUT1	ENST00000308436	human	ensembl	74_37	-1	known	missense	c.634	p.E212K	0.996	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016				63	0	0	28	23	45.098
INTS5	0	genome.wustl.edu	37	11	62415761	62415761	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	62415761	62415761	C	T	SNP	INTS5	ENST00000330574	human	ensembl	74_37	-1	known	silent	c.1791	p.A597	0.925	NULL	NULL	-	no_errors	INTS5	HGNC	ENSG00000185085				64	0	0	46	24	34.2857
UBXN1	0	genome.wustl.edu	37	11	62445429	62445429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	62445429	62445429	C	T	SNP	UBXN1	ENST00000294119	human	ensembl	74_37	-1	known	missense	c.452	p.R151Q	1.000	NULL	pfam_UBX,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_UBX,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_UBX	-	no_errors	UBXN1	HGNC	ENSG00000162191				79	0	0	34	18	34.6154
FAM160A2	0	genome.wustl.edu	37	11	6245178	6245178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	6245178	6245178	G	A	SNP	FAM160A2	ENST00000265978	human	ensembl	74_37	-1	known	missense	c.439	p.R147W	1.000	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A2	HGNC	ENSG00000051009				131	0	0	47	38	44.7059
LRRN4CL	0	genome.wustl.edu	37	11	62455850	62455850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	62455850	62455850	G	A	SNP	LRRN4CL	ENST00000317449	human	ensembl	74_37	-1	known	missense	c.131	p.P44L	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4CL	HGNC	ENSG00000177363				38	0	0	21	13	38.2353
SLC3A2	0	genome.wustl.edu	37	11	62656124	62656124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	62656124	62656124	C	T	SNP	SLC3A2	ENST00000377892	human	ensembl	74_37	+1	known	missense	c.1945	p.P649S	0.581	NULL	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003				77	0	0	63	28	30.7692
PRKCDBP	0	genome.wustl.edu	37	11	6340490	6340490	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	6340490	6340490	G	T	SNP	PRKCDBP	ENST00000303927	human	ensembl	74_37	-1	known	missense	c.689	p.P230H	0.009	NULL	NULL	-	no_errors	PRKCDBP	HGNC	ENSG00000170955				176	0	0	63	71	52.9851
MARK2	0	genome.wustl.edu	37	11	63670157	63670157	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	63670157	63670157	A	G	SNP	MARK2	ENST00000402010	human	ensembl	74_37	+1	known	missense	c.1319	p.D440G	0.990	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518				59	0	0	29	18	38.2979
OTUB1	0	genome.wustl.edu	37	11	63764119	63764119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	63764119	63764119	C	T	SNP	OTUB1	ENST00000422031	human	ensembl	74_37	+1	known	missense	c.448	p.R150W	1.000	pfam_Peptidase_C65_otubain,pfam_OTU,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	pfam_Peptidase_C65_otubain,pfam_OTU,pirsf_Ubiquitin_thioesterase_Otubain,pfscan_OTU	-	no_errors	OTUB1	HGNC	ENSG00000167770				54	0	0	33	22	40
PPP1R14B	0	genome.wustl.edu	37	11	64014017	64014017	+	Silent	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64014017	64014017	C	G	SNP	PPP1R14B	ENST00000309318	human	ensembl	74_37	-1	known	silent	c.129	p.G43	0.000	superfamily_PP1_inhibitor	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	-	no_errors	PPP1R14B	HGNC	ENSG00000173457				24	0	0	20	8	28.5714
GPR137	0	genome.wustl.edu	37	11	64056562	64056562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64056562	64056562	C	T	SNP	GPR137	ENST00000438980	human	ensembl	74_37	+1	known	missense	c.1085	p.P362L	0.937	NULL	NULL	-	no_errors	GPR137	HGNC	ENSG00000173264				46	0	0	23	19	45.2381
PRDX5	0	genome.wustl.edu	37	11	64088505	64088505	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64088505	64088505	G	A	SNP	PRDX5	ENST00000265462	human	ensembl	74_37	+1	known	silent	c.504	p.S168	0.000	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX5	HGNC	ENSG00000126432				188	0	0	82	55	40.146
CCDC88B	0	genome.wustl.edu	37	11	64120317	64120317	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64120317	64120317	G	A	SNP	CCDC88B	ENST00000356786	human	ensembl	74_37	+1	known	missense	c.3458	p.G1153D	0.999	NULL	pfam_Hook-related_fam	-	no_errors	CCDC88B	HGNC	ENSG00000168071				26	0	0	23	7	23.3333
CCDC88B	0	genome.wustl.edu	37	11	64121481	64121481	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64121481	64121481	G	A	SNP	CCDC88B	ENST00000356786	human	ensembl	74_37	+1	known	missense	c.3938	p.G1313D	1.000	NULL	pfam_Hook-related_fam	-	no_errors	CCDC88B	HGNC	ENSG00000168071				44	0	0	26	16	38.0952
RPS6KA4	0	genome.wustl.edu	37	11	64135729	64135729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64135729	64135729	G	A	SNP	RPS6KA4	ENST00000334205	human	ensembl	74_37	+1	known	missense	c.1197	p.M399I	1.000	superfamily_Kinase-like_dom,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA4	HGNC	ENSG00000162302				37	0	0	44	4	8.33333
NRXN2	0	genome.wustl.edu	37	11	64374787	64374787	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64374787	64374787	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	nonsense	c.5020	p.R1674*	1.000	smart_Neurexin-like	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				52	0	0	34	21	38.1818
PYGM	0	genome.wustl.edu	37	11	64521114	64521114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64521114	64521114	C	T	SNP	PYGM	ENST00000164139	human	ensembl	74_37	-1	known	missense	c.1280	p.R427Q	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976				15	0	0	24	4	14.2857
CDC42BPG	0	genome.wustl.edu	37	11	64597244	64597244	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64597244	64597244	C	T	SNP	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	silent	c.3666	p.L1222	0.950	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219				14	0	0	12	11	47.8261
VPS51	0	genome.wustl.edu	37	11	64878874	64878874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64878874	64878874	C	T	SNP	VPS51	ENST00000279281	human	ensembl	74_37	+1	known	missense	c.2164	p.R722C	1.000	NULL	pfam_COG8,pfam_Vacuolar_sorting-assoc_54,pfam_COG_su2_N,pfam_RZZ-complex_Zw10,superfamily_Cullin_repeat-like_dom	-	no_errors	VPS51	HGNC	ENSG00000149823				65	0	0	31	31	50
SYVN1	0	genome.wustl.edu	37	11	64900466	64900466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64900466	64900466	C	T	SNP	SYVN1	ENST00000377190	human	ensembl	74_37	-1	known	missense	c.305	p.R102H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SYVN1	HGNC	ENSG00000162298				51	0	0	40	31	43.662
CAPN1	0	genome.wustl.edu	37	11	64977871	64977871	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64977871	64977871	G	A	SNP	CAPN1	ENST00000279247	human	ensembl	74_37	+1	known	silent	c.2007	p.A669	0.950	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216				31	0	0	18	12	40
SLC22A20	0	genome.wustl.edu	37	11	64981838	64981838	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64981838	64981838	G	A	SNP	SLC22A20	ENST00000525264	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.968	-	-	-	no_errors	SLC22A20	HGNC	ENSG00000197847				44	0	0	27	10	27.027
FRMD8	0	genome.wustl.edu	37	11	65178811	65178811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	65178811	65178811	G	A	SNP	FRMD8	ENST00000317568	human	ensembl	74_37	+1	known	missense	c.1375	p.D459N	0.369	NULL	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD8	HGNC	ENSG00000126391				14	0	0	11	12	52.1739
LTBP3	0	genome.wustl.edu	37	11	65315489	65315489	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	65315489	65315489	T	C	SNP	LTBP3	ENST00000301873	human	ensembl	74_37	-1	known	missense	c.1748	p.N583S	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP3	HGNC	ENSG00000168056				83	0	0	54	37	40.6593
PCNXL3	0	genome.wustl.edu	37	11	65387251	65387251	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	65387251	65387251	G	A	SNP	PCNXL3	ENST00000355703	human	ensembl	74_37	+1	known	missense	c.1856	p.R619Q	0.996	NULL	pfam_Pecanex	-	no_errors	PCNXL3	HGNC	ENSG00000197136				8	0	0	7	4	36.3636
SIPA1	0	genome.wustl.edu	37	11	65414977	65414977	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	65414977	65414977	G	C	SNP	SIPA1	ENST00000394224	human	ensembl	74_37	+1	known	missense	c.2154	p.E718D	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1	HGNC	ENSG00000213445				12	0	0	11	4	26.6667
RELA	0	genome.wustl.edu	37	11	65429435	65429435	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	65429435	65429435	A	G	SNP	RELA	ENST00000406246	human	ensembl	74_37	-1	known	silent	c.159	p.D53	0.891	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NF_Rel_Dor	-	no_errors	RELA	HGNC	ENSG00000173039				42	0	0	26	19	42.2222
MUS81	0	genome.wustl.edu	37	11	65631120	65631120	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	65631120	65631120	A	G	SNP	MUS81	ENST00000308110	human	ensembl	74_37	+1	known	missense	c.889	p.T297A	0.000	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,smart_ERCC4_domain	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_DNA_pol_b-like_N,smart_ERCC4_domain	-	no_errors	MUS81	HGNC	ENSG00000172732				49	0	0	23	21	47.7273
FIBP	0	genome.wustl.edu	37	11	65651477	65651477	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	65651477	65651477	G	A	SNP	FIBP	ENST00000338369	human	ensembl	74_37	-1	known	missense	c.1063	p.R355C	1.000	pfam_FIBP	pfam_FIBP	-	no_errors	FIBP	HGNC	ENSG00000172500				36	0	0	24	6	20
GAL3ST3	0	genome.wustl.edu	37	11	65810429	65810429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	65810429	65810429	G	A	SNP	GAL3ST3	ENST00000312006	human	ensembl	74_37	-1	known	missense	c.845	p.A282V	0.881	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST3	HGNC	ENSG00000175229				8	0	0	4	6	60
RIN1	0	genome.wustl.edu	37	11	66102301	66102301	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	66102301	66102301	C	T	SNP	RIN1	ENST00000311320	human	ensembl	74_37	-1	known	silent	c.969	p.E323	1.000	NULL	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN1	HGNC	ENSG00000174791				8	0	0	5	3	37.5
DPP3	0	genome.wustl.edu	37	11	66260252	66260252	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	66260252	66260252	C	T	SNP	DPP3	ENST00000360510	human	ensembl	74_37	+1	known	nonsense	c.1054	p.Q352*	1.000	pirsf_Dipeptidyl-peptase3	pirsf_Dipeptidyl-peptase3	-	no_errors	DPP3	HGNC	ENSG00000254986				139	0	0	94	67	41.6149
ILK	0	genome.wustl.edu	37	11	6632036	6632036	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	6632036	6632036	C	T	SNP	ILK	ENST00000526318	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ILK	HGNC	ENSG00000166333				17	0	0	9	7	43.75
SPTBN2	0	genome.wustl.edu	37	11	66460053	66460053	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	66460053	66460053	A	G	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.5144	p.V1715A	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				71	0	0	53	27	33.75
DCHS1	0	genome.wustl.edu	37	11	6648096	6648096	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	6648096	6648096	C	T	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	silent	c.6174	p.L2058	0.180	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				40	0	0	30	24	44.4444
PC	0	genome.wustl.edu	37	11	66617168	66617168	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	66617168	66617168	T	C	SNP	PC	ENST00000393958	human	ensembl	74_37	-1	known	missense	c.3061	p.K1021E	1.000	pfam_Carboxylase_cons_dom,pirsf_Pyruv_COase,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599				74	0	0	49	22	30.9859
KDM2A	0	genome.wustl.edu	37	11	67018208	67018208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	67018208	67018208	C	T	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	missense	c.2707	p.R903C	1.000	pfam_F-box_dom	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				156	0	0	131	13	9.02778
KDM2A	0	genome.wustl.edu	37	11	67022389	67022389	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	67022389	67022389	A	G	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	missense	c.3352	p.I1118V	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				36	0	0	21	15	41.6667
SSH3	0	genome.wustl.edu	37	11	67077245	67077245	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	67077245	67077245	G	T	SNP	SSH3	ENST00000308127	human	ensembl	74_37	+1	known	missense	c.1215	p.Q405H	0.992	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830				80	0	0	81	8	8.98876
TBC1D10C	0	genome.wustl.edu	37	11	67172910	67172910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	67172910	67172910	G	A	SNP	TBC1D10C	ENST00000312390	human	ensembl	74_37	+1	known	missense	c.293	p.R98H	0.998	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463				35	0	0	27	6	18.1818
TMEM134	0	genome.wustl.edu	37	11	67232302	67232302	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	67232302	67232302	C	T	SNP	TMEM134	ENST00000393877	human	ensembl	74_37	-1	known	silent	c.432	p.V144	1.000	pfam_DUF872_TM	pfam_DUF872_TM	-	no_errors	TMEM134	HGNC	ENSG00000172663				29	0	0	12	8	40
NDUFV1	0	genome.wustl.edu	37	11	67376963	67376963	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	67376963	67376963	G	T	SNP	NDUFV1	ENST00000322776	human	ensembl	74_37	+1	known	missense	c.367	p.G123C	0.996	pfam_NADH_UbQ_OxRdtase_51kDa_su,tigrfam_NADH-UbQ_OxRdtase_suF	pfam_NADH_UbQ_OxRdtase_51kDa_su,pfam_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,pfam_Soluble_ligand-bd,smart_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,tigrfam_NADH-UbQ_OxRdtase_suF	-	no_errors	NDUFV1	HGNC	ENSG00000167792				147	0	0	105	6	5.40541
LRP5	0	genome.wustl.edu	37	11	68115579	68115579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	68115579	68115579	G	A	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	missense	c.356	p.G119D	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337				187	1	0.531915	106	76	41.7582
LRP5	0	genome.wustl.edu	37	11	68177424	68177424	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	68177424	68177424	G	A	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	missense	c.2134	p.V712M	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337				83	0	0	46	42	47.7273
LRP5	0	genome.wustl.edu	37	11	68192762	68192762	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	68192762	68192762	T	C	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	splice_site	c.3427+2	e15+2	1.000	-	-	-	no_errors	LRP5	HGNC	ENSG00000162337				28	0	0	16	9	36
OR2D2	0	genome.wustl.edu	37	11	6913347	6913347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	6913347	6913347	G	A	SNP	OR2D2	ENST00000299459	human	ensembl	74_37	-1	known	missense	c.385	p.P129S	0.998	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2D2	HGNC	ENSG00000166368				98	0	0	58	37	38.9474
NUMA1	0	genome.wustl.edu	37	11	71720111	71720111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	71720111	71720111	G	A	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	missense	c.4960	p.R1654W	0.605	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				60	0	0	34	29	46.0317
CLPB	0	genome.wustl.edu	37	11	72145511	72145511	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	72145511	72145511	C	A	SNP	CLPB	ENST00000294053	human	ensembl	74_37	-1	known	missense	c.8	p.G3V	0.914	NULL	pfam_ATPase_AAA-2,pfam_Ankyrin_rpt,pfam_Clp_ATPase_C,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,pfam_Zeta_toxin_domain,pfam_Sigma_54_int,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_AAA+_ATPase,prints_ClpA/B,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CLPB	HGNC	ENSG00000162129				63	0	0	48	8	14.2857
ARAP1	0	genome.wustl.edu	37	11	72404824	72404824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	72404824	72404824	C	T	SNP	ARAP1	ENST00000393609	human	ensembl	74_37	-1	known	missense	c.3721	p.V1241M	1.000	pfam_Ras-assoc,pfscan_Ras-assoc	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635				15	0	0	13	5	27.7778
ARAP1	0	genome.wustl.edu	37	11	72422546	72422546	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	72422546	72422546	T	C	SNP	ARAP1	ENST00000393609	human	ensembl	74_37	-1	known	splice_site	c.1023-2	e6-2	1.000	-	-	-	no_errors	ARAP1	HGNC	ENSG00000186635				75	0	0	46	14	23.3333
FCHSD2	0	genome.wustl.edu	37	11	72598525	72598525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	72598525	72598525	C	T	SNP	FCHSD2	ENST00000409418	human	ensembl	74_37	-1	known	missense	c.1136	p.R379H	1.000	NULL	pfam_SH3_domain,pfam_FCH_dom,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	FCHSD2	HGNC	ENSG00000137478				77	0	0	39	26	40
ARHGEF17	0	genome.wustl.edu	37	11	73021469	73021469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	73021469	73021469	C	T	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	missense	c.1786	p.R596C	1.000	superfamily_Vinculin/catenin	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				90	0	0	93	7	7
RELT	0	genome.wustl.edu	37	11	73103367	73103367	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	73103367	73103367	C	T	SNP	RELT	ENST00000064780	human	ensembl	74_37	+1	known	missense	c.479	p.A160V	0.415	prints_TNFR_19-like	pfam_TNF_rcpt_RELT,prints_TNFR_19-like	-	no_errors	RELT	HGNC	ENSG00000054967				56	0	0	32	18	36
PAAF1	0	genome.wustl.edu	37	11	73625524	73625524	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	73625524	73625524	G	A	SNP	PAAF1	ENST00000310571	human	ensembl	74_37	+1	known	missense	c.794	p.C265Y	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAAF1	HGNC	ENSG00000175575				73	0	0	36	30	45.4545
XRRA1	0	genome.wustl.edu	37	11	74554379	74554379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	74554379	74554379	G	A	SNP	XRRA1	ENST00000340360	human	ensembl	74_37	-1	known	missense	c.2245	p.R749C	0.024	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435				26	0	0	14	12	46.1538
LRRC32	0	genome.wustl.edu	37	11	76371220	76371220	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	76371220	76371220	G	T	SNP	LRRC32	ENST00000260061	human	ensembl	74_37	-1	known	missense	c.1417	p.L473I	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507				43	0	0	32	7	17.9487
B3GNT6	0	genome.wustl.edu	37	11	76751188	76751188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	76751188	76751188	C	T	SNP	B3GNT6	ENST00000533140	human	ensembl	74_37	+1	known	missense	c.593	p.T198M	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT6	HGNC	ENSG00000198488				79	0	0	76	40	34.4828
MYO7A	0	genome.wustl.edu	37	11	76910689	76910689	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	76910689	76910689	T	C	SNP	MYO7A	ENST00000409709	human	ensembl	74_37	+1	known	missense	c.4678	p.C1560R	1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474				40	0	0	20	7	25.9259
GAB2	0	genome.wustl.edu	37	11	77930333	77930333	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	77930333	77930333	C	A	SNP	GAB2	ENST00000361507	human	ensembl	74_37	-1	known	missense	c.2016	p.K672N	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327				92	0	0	60	23	27.7108
GAB2	0	genome.wustl.edu	37	11	77937549	77937549	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	77937549	77937549	T	C	SNP	GAB2	ENST00000361507	human	ensembl	74_37	-1	known	missense	c.1169	p.N390S	0.998	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327				142	0	0	63	47	42.7273
TENM4	0	genome.wustl.edu	37	11	78467902	78467902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	78467902	78467902	C	T	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.2704	p.V902M	0.997	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				52	0	0	19	13	40.625
SLC25A22	0	genome.wustl.edu	37	11	792206	792206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	792206	792206	G	A	SNP	SLC25A22	ENST00000320230	human	ensembl	74_37	-1	known	missense	c.754	p.R252W	0.576	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A22	HGNC	ENSG00000177542				61	0	0	27	28	50.9091
OR10A6	0	genome.wustl.edu	37	11	7949288	7949288	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	7949288	7949288	G	A	SNP	OR10A6	ENST00000309838	human	ensembl	74_37	-1	known	nonsense	c.922	p.R308*	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A6	HGNC	ENSG00000175393				133	0	0	42	32	43.2432
PNPLA2	0	genome.wustl.edu	37	11	824014	824014	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	824014	824014	C	T	SNP	PNPLA2	ENST00000336615	human	ensembl	74_37	+1	known	silent	c.936	p.C312	0.693	superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA2	HGNC	ENSG00000177666				24	0	0	9	8	47.0588
C11orf82	0	genome.wustl.edu	37	11	82644065	82644065	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	82644065	82644065	C	T	SNP	C11orf82	ENST00000430323	human	ensembl	74_37	+1	known	missense	c.1685	p.S562L	0.000	NULL	pfam_Rep_factor-A_C,superfamily_NA-bd_OB-fold	-	no_errors	C11orf82	HGNC	ENSG00000165490				55	0	0	16	16	50
SYTL2	0	genome.wustl.edu	37	11	85445464	85445464	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	85445464	85445464	G	T	SNP	SYTL2	ENST00000316356	human	ensembl	74_37	-1	known	missense	c.908	p.P303H	0.026	NULL	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	-	no_errors	SYTL2	HGNC	ENSG00000137501				207	0	0	127	14	9.92908
CCDC81	0	genome.wustl.edu	37	11	86133683	86133683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	86133683	86133683	C	T	SNP	CCDC81	ENST00000445632	human	ensembl	74_37	+1	known	missense	c.1885	p.R629C	0.715	NULL	superfamily_IHF-like_DNA-bd_dom	-	no_errors	CCDC81	HGNC	ENSG00000149201				63	0	0	41	23	35.9375
TMEM135	0	genome.wustl.edu	37	11	86782632	86782632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	86782632	86782632	G	A	SNP	TMEM135	ENST00000305494	human	ensembl	74_37	+1	known	missense	c.337	p.A113T	1.000	NULL	NULL	-	no_errors	TMEM135	HGNC	ENSG00000166575				68	0	0	33	19	36.5385
TMEM135	0	genome.wustl.edu	37	11	87025590	87025590	+	Splice_Site	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	87025590	87025590	G	A	SNP	TMEM135	ENST00000305494	human	ensembl	74_37	+1	known	splice_site	c.1077+1	e12+1	1.000	-	-	-	no_errors	TMEM135	HGNC	ENSG00000166575				28	0	0	15	9	37.5
ST5	0	genome.wustl.edu	37	11	8751578	8751578	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	8751578	8751578	G	T	SNP	ST5	ENST00000313726	human	ensembl	74_37	-1	known	missense	c.1259	p.P420H	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444				345	0	0	308	30	8.87574
SCUBE2	0	genome.wustl.edu	37	11	9111333	9111333	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	9111333	9111333	G	A	SNP	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	silent	c.177	p.D59	0.997	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356				155	0	0	101	53	34.4156
FAT3	0	genome.wustl.edu	37	11	92531598	92531598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	92531598	92531598	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.5419	p.R1807W	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				36	0	0	20	3	13.0435
FAT3	0	genome.wustl.edu	37	11	92569867	92569867	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	92569867	92569867	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.10222	p.R3408W	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				42	0	0	38	4	9.52381
FAT3	0	genome.wustl.edu	37	11	92590423	92590423	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	92590423	92590423	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	silent	c.11409	p.P3803	0.958	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				112	0	0	48	24	33.3333
PIWIL4	0	genome.wustl.edu	37	11	94326792	94326792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	94326792	94326792	C	T	SNP	PIWIL4	ENST00000299001	human	ensembl	74_37	+1	known	missense	c.1135	p.L379F	1.000	pfam_PAZ_dom,superfamily_PAZ_dom,smart_PAZ_dom,pfscan_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL4	HGNC	ENSG00000134627				80	0	0	59	8	11.9403
AP2A2	0	genome.wustl.edu	37	11	970290	970290	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	970290	970290	C	T	SNP	AP2A2	ENST00000332231	human	ensembl	74_37	+1	known	silent	c.258	p.N86	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020				87	0	0	44	27	38.0282
CNTN5	0	genome.wustl.edu	37	11	99932040	99932040	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	99932040	99932040	A	G	SNP	CNTN5	ENST00000279463	human	ensembl	74_37	+1	known	silent	c.1077	p.V359	0.954	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN5	HGNC	ENSG00000149972				109	0	0	42	35	45.4545
ANO4	0	genome.wustl.edu	37	12	101433764	101433764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	101433764	101433764	C	T	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	missense	c.929	p.T310I	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572				141	0	0	141	8	5.36913
CHST11	0	genome.wustl.edu	37	12	105151236	105151236	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	105151236	105151236	G	T	SNP	CHST11	ENST00000303694	human	ensembl	74_37	+1	known	missense	c.714	p.E238D	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST11	HGNC	ENSG00000171310				91	0	0	52	16	23.5294
TCP11L2	0	genome.wustl.edu	37	12	106708177	106708177	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	106708177	106708177	G	C	SNP	TCP11L2	ENST00000299045	human	ensembl	74_37	+1	known	missense	c.199	p.A67P	1.000	NULL	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046				85	0	0	32	17	34.6939
PWP1	0	genome.wustl.edu	37	12	108091273	108091273	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	108091273	108091273	C	A	SNP	PWP1	ENST00000412830	human	ensembl	74_37	+1	known	missense	c.643	p.P215T	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP1	HGNC	ENSG00000136045				98	0	0	32	12	27.2727
CORO1C	0	genome.wustl.edu	37	12	109041035	109041035	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	109041035	109041035	C	T	SNP	CORO1C	ENST00000549384	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.296	-	-	-	no_errors	CORO1C	HGNC	ENSG00000110880				24	0	0	17	14	45.1613
ALKBH2	0	genome.wustl.edu	37	12	109527862	109527862	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	109527862	109527862	T	C	SNP	ALKBH2	ENST00000343075	human	ensembl	74_37	-1	known	missense	c.431	p.H144R	0.595	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH2	HGNC	ENSG00000189046				98	0	0	57	17	22.973
UBE3B	0	genome.wustl.edu	37	12	109940840	109940840	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	109940840	109940840	G	A	SNP	UBE3B	ENST00000342494	human	ensembl	74_37	+1	known	missense	c.1295	p.R432H	1.000	NULL	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148				121	0	0	59	31	34.4444
FAM222A	0	genome.wustl.edu	37	12	110206268	110206268	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	110206268	110206268	C	T	SNP	FAM222A	ENST00000358906	human	ensembl	74_37	+1	known	silent	c.534	p.A178	0.988	NULL	NULL	-	no_errors	FAM222A	HGNC	ENSG00000139438				46	0	0	18	21	53.8462
ANKRD13A	0	genome.wustl.edu	37	12	110461861	110461861	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	110461861	110461861	G	A	SNP	ANKRD13A	ENST00000261739	human	ensembl	74_37	+1	known	missense	c.745	p.G249R	1.000	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ubiquitin-int_motif,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif	-	no_errors	ANKRD13A	HGNC	ENSG00000076513				241	0	0	182	14	7.14286
TAS2R20	0	genome.wustl.edu	37	12	11149590	11149590	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	11149590	11149590	C	T	SNP	TAS2R20	ENST00000538986	human	ensembl	74_37	-1	known	nonsense	c.885	p.W295*	0.001	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R20	HGNC	ENSG00000255837				124	0	0	96	6	5.88235
CUX2	0	genome.wustl.edu	37	12	111701597	111701597	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	111701597	111701597	G	A	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	silent	c.255	p.A85	0.742	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				180	0	0	135	11	7.53425
CUX2	0	genome.wustl.edu	37	12	111731284	111731284	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	111731284	111731284	G	A	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	silent	c.471	p.T157	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				14	0	0	13	6	31.5789
CUX2	0	genome.wustl.edu	37	12	111758570	111758570	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	111758570	111758570	C	T	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	silent	c.2757	p.F919	0.975	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				23	0	0	15	15	50
FAM109A	0	genome.wustl.edu	37	12	111801244	111801244	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	111801244	111801244	G	A	SNP	FAM109A	ENST00000361483	human	ensembl	74_37	-1	known	silent	c.27	p.P9	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FAM109A	HGNC	ENSG00000198324				25	0	0	16	5	23.8095
ACAD10	0	genome.wustl.edu	37	12	112182702	112182702	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	112182702	112182702	A	G	SNP	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	missense	c.2063	p.E688G	1.000	superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271				101	0	0	42	18	30
NAA25	0	genome.wustl.edu	37	12	112499109	112499109	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	112499109	112499109	C	T	SNP	NAA25	ENST00000261745	human	ensembl	74_37	-1	known	silent	c.1233	p.L411	1.000	pfam_N-acetylTrfase_B_cplx_non-cat	pfam_N-acetylTrfase_B_cplx_non-cat,pfscan_TPR-contain_dom	-	no_errors	NAA25	HGNC	ENSG00000111300				54	0	0	26	19	42.2222
PTPN11	0	genome.wustl.edu	37	12	112926270	112926270	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	112926270	112926270	C	T	SNP	PTPN11	ENST00000351677	human	ensembl	74_37	+1	known	missense	c.1403	p.T468M	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN11	HGNC	ENSG00000179295				86	0	0	33	34	50.7463
DTX1	0	genome.wustl.edu	37	12	113534522	113534522	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	113534522	113534522	G	A	SNP	DTX1	ENST00000257600	human	ensembl	74_37	+1	known	silent	c.1641	p.V547	0.997	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144				21	0	0	19	12	38.7097
RASAL1	0	genome.wustl.edu	37	12	113541993	113541993	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	113541993	113541993	C	T	SNP	RASAL1	ENST00000546530	human	ensembl	74_37	-1	known	silent	c.1944	p.A648	0.902	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGAP,pfam_C2_dom,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP	-	no_errors	RASAL1	HGNC	ENSG00000111344				27	0	0	17	10	37.037
ERC1	0	genome.wustl.edu	37	12	1137146	1137146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	1137146	1137146	G	A	SNP	ERC1	ENST00000360905	human	ensembl	74_37	+1	known	missense	c.77	p.R26H	1.000	NULL	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805				161	1	0.617284	63	35	35.7143
ERC1	0	genome.wustl.edu	37	12	1137661	1137661	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	1137661	1137661	C	T	SNP	ERC1	ENST00000360905	human	ensembl	74_37	+1	known	nonsense	c.592	p.R198*	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,pfam_Rab-bd_FIP-RBD,superfamily_Prefoldin	-	no_errors	ERC1	HGNC	ENSG00000082805				89	0	0	27	26	49.0566
PRB3	0	genome.wustl.edu	37	12	11421601	11421601	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	11421601	11421601	A	G	SNP	PRB3	ENST00000381842	human	ensembl	74_37	-1	known	silent	c.66	p.D22	0.004	NULL	NULL	-	no_errors	PRB3	HGNC	ENSG00000197870				190	0	0	136	37	21.3873
NOS1	0	genome.wustl.edu	37	12	117665430	117665430	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	117665430	117665430	T	C	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.3422	p.E1141G	1.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				100	0	0	67	4	5.6338
CIT	0	genome.wustl.edu	37	12	120159173	120159173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	120159173	120159173	G	A	SNP	CIT	ENST00000261833	human	ensembl	74_37	-1	known	missense	c.3547	p.R1183W	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CIT	HGNC	ENSG00000122966				99	0	0	35	21	37.5
RPLP0	0	genome.wustl.edu	37	12	120635184	120635184	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	120635184	120635184	A	G	SNP	RPLP0	ENST00000228306	human	ensembl	74_37	-1	known	missense	c.733	p.Y245H	1.000	pfam_Ribosomal_L10/L12	pfam_Ribosomal_L10/acidic_P0,pfam_Ribosomal_L10/L12	-	no_errors	RPLP0	HGNC	ENSG00000089157				67	0	0	30	19	38.7755
KDM2B	0	genome.wustl.edu	37	12	121958832	121958832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	121958832	121958832	C	T	SNP	KDM2B	ENST00000377071	human	ensembl	74_37	-1	known	missense	c.1003	p.V335M	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2B	HGNC	ENSG00000089094				72	0	0	55	23	29.4872
TMEM120B	0	genome.wustl.edu	37	12	122199614	122199614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	122199614	122199614	G	A	SNP	TMEM120B	ENST00000342607	human	ensembl	74_37	+1	known	missense	c.521	p.R174Q	1.000	pfam_TMPIT	pfam_TMPIT	-	no_errors	TMEM120B	HGNC	ENSG00000188735				102	0	0	40	21	34.4262
RHOF	0	genome.wustl.edu	37	12	122217517	122217517	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	122217517	122217517	C	T	SNP	RHOF	ENST00000267205	human	ensembl	74_37	-1	known	missense	c.523	p.A175T	0.996	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOF	HGNC	ENSG00000139725				154	0	0	103	48	31.7881
LRRC43	0	genome.wustl.edu	37	12	122667782	122667782	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	122667782	122667782	G	A	SNP	LRRC43	ENST00000339777	human	ensembl	74_37	+1	known	missense	c.91	p.V31M	0.173	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113				14	0	0	13	5	27.7778
B3GNT4	0	genome.wustl.edu	37	12	122691190	122691190	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	122691190	122691190	T	C	SNP	B3GNT4	ENST00000324189	human	ensembl	74_37	+1	known	missense	c.392	p.V131A	0.567	NULL	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT4	HGNC	ENSG00000176383				200	0	0	124	70	36.0825
MPHOSPH9	0	genome.wustl.edu	37	12	123694679	123694679	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	123694679	123694679	T	A	SNP	MPHOSPH9	ENST00000392425	human	ensembl	74_37	-1	known	missense	c.662	p.D221V	0.993	NULL	superfamily_Prefoldin	-	no_errors	MPHOSPH9	HGNC	ENSG00000051825				116	0	0	33	28	45.9016
EIF2B1	0	genome.wustl.edu	37	12	124111624	124111624	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	124111624	124111624	A	G	SNP	EIF2B1	ENST00000424014	human	ensembl	74_37	-1	known	missense	c.449	p.V150A	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B1	HGNC	ENSG00000111361				124	0	0	59	35	37.234
DNAH10	0	genome.wustl.edu	37	12	124305130	124305130	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	124305130	124305130	T	C	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.3650	p.V1217A	0.004	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				64	0	0	40	4	9.09091
CCDC92	0	genome.wustl.edu	37	12	124422299	124422299	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	124422299	124422299	T	C	SNP	CCDC92	ENST00000238156	human	ensembl	74_37	-1	known	missense	c.302	p.E101G	1.000	NULL	NULL	-	no_errors	CCDC92	HGNC	ENSG00000119242				249	0	0	139	12	7.94702
NCOR2	0	genome.wustl.edu	37	12	124821387	124821387	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	124821387	124821387	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	silent	c.6048	p.P2016	0.221	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				84	0	0	37	37	50
MANSC1	0	genome.wustl.edu	37	12	12483571	12483571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	12483571	12483571	G	A	SNP	MANSC1	ENST00000535902	human	ensembl	74_37	-1	known	missense	c.686	p.T229M	0.000	NULL	pfam_MANSC_N,smart_MANSC_N,pfscan_MANSC	-	no_errors	MANSC1	HGNC	ENSG00000111261				88	0	0	54	34	38.6364
DHX37	0	genome.wustl.edu	37	12	125432497	125432497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	125432497	125432497	G	A	SNP	DHX37	ENST00000544745	human	ensembl	74_37	-1	putative	missense	c.2882	p.A961V	0.000	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990				27	0	0	17	14	45.1613
AACS	0	genome.wustl.edu	37	12	125613957	125613957	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	125613957	125613957	C	T	SNP	AACS	ENST00000545511	human	ensembl	74_37	+1	putative	missense	c.239	p.T80M	0.491	NULL	NULL	-	no_errors	AACS	HGNC	ENSG00000081760				274	0	0	139	79	36.2385
DUSP16	0	genome.wustl.edu	37	12	12630669	12630669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	12630669	12630669	C	T	SNP	DUSP16	ENST00000228862	human	ensembl	74_37	-1	known	missense	c.1096	p.V366M	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266				77	0	0	31	21	40.3846
APOLD1	0	genome.wustl.edu	37	12	12940507	12940507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	12940507	12940507	G	A	SNP	APOLD1	ENST00000326765	human	ensembl	74_37	+1	known	missense	c.761	p.R254Q	0.352	NULL	pfam_ApoL	-	no_errors	APOLD1	HGNC	ENSG00000178878				90	0	0	42	37	46.8354
FZD10	0	genome.wustl.edu	37	12	130647923	130647923	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	130647923	130647923	C	A	SNP	FZD10	ENST00000229030	human	ensembl	74_37	+1	known	missense	c.436	p.L146M	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD10	HGNC	ENSG00000111432				192	0	0	152	51	25.1232
FZD10	0	genome.wustl.edu	37	12	130648780	130648780	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	130648780	130648780	C	T	SNP	FZD10	ENST00000539839	human	ensembl	74_37	+1	known	nonsense	c.1195	p.R399*	0.921	NULL	NULL	-	no_errors	FZD10	HGNC	ENSG00000111432				78	0	0	74	6	7.5
RIMBP2	0	genome.wustl.edu	37	12	130935800	130935800	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	130935800	130935800	C	T	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	silent	c.393	p.L131	0.999	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709				88	0	0	44	31	41.3333
GPR133	0	genome.wustl.edu	37	12	131466489	131466489	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	131466489	131466489	C	T	SNP	GPR133	ENST00000261654	human	ensembl	74_37	+1	known	missense	c.371	p.A124V	0.952	superfamily_ConA-like_lec_gl_sf	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452				136	0	0	83	5	5.68182
SFSWAP	0	genome.wustl.edu	37	12	132210036	132210036	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	132210036	132210036	G	T	SNP	SFSWAP	ENST00000261674	human	ensembl	74_37	+1	known	missense	c.693	p.K231N	0.993	pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	pfam_SWAP_N_domain,pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	-	no_errors	SFSWAP	HGNC	ENSG00000061936				84	0	0	53	26	32.9114
EP400	0	genome.wustl.edu	37	12	132504598	132504598	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	132504598	132504598	T	C	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.4390	p.F1464L	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				79	0	0	81	5	5.81395
EP400	0	genome.wustl.edu	37	12	132529956	132529956	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	132529956	132529956	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.6985	p.R2329C	0.997	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				50	0	0	29	10	25.641
EP400	0	genome.wustl.edu	37	12	132547135	132547135	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	132547135	132547135	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8331	p.Q2777	0.764	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				75	0	0	76	6	7.31707
POLE	0	genome.wustl.edu	37	12	133219828	133219828	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	133219828	133219828	G	A	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	silent	c.4533	p.S1511	0.905	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				67	0	0	32	14	30.4348
GOLGA3	0	genome.wustl.edu	37	12	133353594	133353594	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	133353594	133353594	G	A	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	nonsense	c.3805	p.Q1269*	1.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				56	0	0	59	5	7.8125
GRIN2B	0	genome.wustl.edu	37	12	13717534	13717534	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	13717534	13717534	G	A	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.2638	p.R880C	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				180	0	0	97	67	40.8537
C12orf60	0	genome.wustl.edu	37	12	14976431	14976431	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	14976431	14976431	T	C	SNP	C12orf60	ENST00000330828	human	ensembl	74_37	+1	known	silent	c.562	p.L188	0.263	NULL	NULL	-	no_errors	C12orf60	HGNC	ENSG00000182993				72	0	0	28	18	39.1304
PTPRO	0	genome.wustl.edu	37	12	15704534	15704534	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	15704534	15704534	T	C	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	silent	c.2487	p.L829	0.060	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490				125	0	0	42	43	50.5882
MGST1	0	genome.wustl.edu	37	12	16516861	16516861	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	16516861	16516861	C	A	SNP	MGST1	ENST00000010404	human	ensembl	74_37	+1	known	silent	c.354	p.T118	0.000	pfam_Membr-assoc_MAPEG	pfam_Membr-assoc_MAPEG	-	no_errors	MGST1	HGNC	ENSG00000008394				170	0	0	75	34	31.1927
DCP1B	0	genome.wustl.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	2062350	2062350	C	G	SNP	DCP1B	ENST00000280665	human	ensembl	74_37	-1	known	missense	c.756	p.Q252H	0.000	NULL	pfam_DCP1	-	no_errors	DCP1B	HGNC	ENSG00000151065				63	0	0	51	7	12.069
ETNK1	0	genome.wustl.edu	37	12	22826494	22826494	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	22826494	22826494	G	A	SNP	ETNK1	ENST00000266517	human	ensembl	74_37	+1	known	missense	c.1112	p.R371H	0.999	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	ETNK1	HGNC	ENSG00000139163				80	0	0	35	19	35.1852
CACNA1C	0	genome.wustl.edu	37	12	2622118	2622118	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	2622118	2622118	A	G	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.1358	p.D453G	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				20	0	0	11	7	38.8889
ITPR2	0	genome.wustl.edu	37	12	26639255	26639255	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	26639255	26639255	C	A	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	missense	c.5593	p.G1865W	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				101	0	0	28	18	39.1304
STK38L	0	genome.wustl.edu	37	12	27467586	27467586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	27467586	27467586	G	A	SNP	STK38L	ENST00000389032	human	ensembl	74_37	+1	known	missense	c.667	p.A223T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	STK38L	HGNC	ENSG00000211455				65	0	0	18	15	45.4545
FAR2	0	genome.wustl.edu	37	12	29474809	29474809	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	29474809	29474809	G	A	SNP	FAR2	ENST00000182377	human	ensembl	74_37	+1	known	silent	c.1209	p.T403	0.007	pfam_FAR	pfam_Male_sterile_NAD-bd,pfam_FAR,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_Polysac_CapD-like	-	no_errors	FAR2	HGNC	ENSG00000064763				130	0	0	37	28	43.0769
ERGIC2	0	genome.wustl.edu	37	12	29524560	29524560	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	29524560	29524560	G	A	SNP	ERGIC2	ENST00000360150	human	ensembl	74_37	-1	known	nonsense	c.7	p.R3*	1.000	NULL	pfam_Erv_C	-	no_errors	ERGIC2	HGNC	ENSG00000087502				39	0	0	24	4	14.2857
OVCH1	0	genome.wustl.edu	37	12	29617462	29617462	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	29617462	29617462	G	A	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	silent	c.2103	p.T701	0.989	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				54	0	0	32	4	11.1111
FOXM1	0	genome.wustl.edu	37	12	2973658	2973658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	2973658	2973658	C	T	SNP	FOXM1	ENST00000342628	human	ensembl	74_37	-1	known	missense	c.1094	p.R365Q	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206				101	0	0	49	35	41.6667
KIAA1551	0	genome.wustl.edu	37	12	32137913	32137913	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	32137913	32137913	C	T	SNP	KIAA1551	ENST00000312561	human	ensembl	74_37	+1	known	missense	c.4024	p.P1342S	0.000	NULL	NULL	-	no_errors	KIAA1551	HGNC	ENSG00000174718				114	0	0	53	34	39.0805
BICD1	0	genome.wustl.edu	37	12	32490722	32490722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	32490722	32490722	C	T	SNP	BICD1	ENST00000281474	human	ensembl	74_37	+1	known	missense	c.2542	p.R848W	1.000	NULL	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC_like_C_dom	-	no_errors	BICD1	HGNC	ENSG00000151746				153	0	0	81	58	41.7266
DNM1L	0	genome.wustl.edu	37	12	32866233	32866233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	32866233	32866233	G	A	SNP	DNM1L	ENST00000553257	human	ensembl	74_37	+1	known	missense	c.586	p.A196T	1.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_GED,prints_Dynamin_SF	-	no_errors	DNM1L	HGNC	ENSG00000087470				116	0	0	72	4	5.26316
LRRK2	0	genome.wustl.edu	37	12	40653408	40653408	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	40653408	40653408	T	C	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	splice_site	c.1543+2	e13+2	1.000	-	-	-	no_errors	LRRK2	HGNC	ENSG00000188906				100	0	0	37	26	41.2698
LRRK2	0	genome.wustl.edu	37	12	40699624	40699624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	40699624	40699624	C	T	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.3815	p.S1272F	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				77	0	0	32	6	15.7895
CNTN1	0	genome.wustl.edu	37	12	41312552	41312552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	41312552	41312552	C	T	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.206	p.A69V	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				101	0	0	45	28	38.3562
PRICKLE1	0	genome.wustl.edu	37	12	42853839	42853839	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	42853839	42853839	G	A	SNP	PRICKLE1	ENST00000345127	human	ensembl	74_37	-1	known	silent	c.2268	p.G756	0.006	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE1	HGNC	ENSG00000139174				161	0	0	92	54	36.9863
NELL2	0	genome.wustl.edu	37	12	44915860	44915860	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	44915860	44915860	A	G	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	missense	c.2248	p.C750R	1.000	smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613				89	0	0	38	16	29.6296
FGF6	0	genome.wustl.edu	37	12	4554487	4554487	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	4554487	4554487	G	A	SNP	FGF6	ENST00000228837	human	ensembl	74_37	-1	known	missense	c.250	p.R84W	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF6	HGNC	ENSG00000111241				103	1	0.961538	74	23	23.7113
SCAF11	0	genome.wustl.edu	37	12	46321969	46321969	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	46321969	46321969	C	T	SNP	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	silent	c.1515	p.L505	0.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218				97	0	0	43	21	32.8125
AKAP3	0	genome.wustl.edu	37	12	4735743	4735743	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	4735743	4735743	G	A	SNP	AKAP3	ENST00000228850	human	ensembl	74_37	-1	known	silent	c.2325	p.A775	0.801	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254				127	0	0	53	34	39.0805
AKAP3	0	genome.wustl.edu	37	12	4737134	4737134	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	4737134	4737134	T	C	SNP	AKAP3	ENST00000228850	human	ensembl	74_37	-1	known	missense	c.934	p.T312A	1.000	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254				57	0	0	19	16	45.7143
ENSG00000258352	0	genome.wustl.edu	37	12	47529609	47529609	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	47529609	47529609	T	C	SNP	ENSG00000258352	ENST00000548463	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.055	-	-	-	no_errors	RP11-23J18.1	Clone_based_vega_gene	ENSG00000258352				30	0	0	20	18	47.3684
CCNT1	0	genome.wustl.edu	37	12	49089559	49089559	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	49089559	49089559	G	A	SNP	CCNT1	ENST00000261900	human	ensembl	74_37	-1	known	missense	c.760	p.R254C	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315				53	0	0	21	12	36.3636
KMT2D	0	genome.wustl.edu	37	12	49416123	49416123	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	49416123	49416123	T	C	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.16352	p.Y5451C	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				23	0	0	15	6	28.5714
KMT2D	0	genome.wustl.edu	37	12	49420024	49420024	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	49420024	49420024	A	G	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.15725	p.V5242A	0.014	pfam_FYrich_C,smart_FYrich_C	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				99	0	0	52	22	29.7297
PRPH	0	genome.wustl.edu	37	12	49690795	49690795	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	49690795	49690795	G	A	SNP	PRPH	ENST00000257860	human	ensembl	74_37	+1	known	missense	c.826	p.A276T	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,prints_Keratin_I	-	no_errors	PRPH	HGNC	ENSG00000135406				48	0	0	36	10	21.7391
KCNH3	0	genome.wustl.edu	37	12	49933274	49933274	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	49933274	49933274	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	silent	c.75	p.T25	1.000	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519				23	0	0	20	24	54.5455
MCRS1	0	genome.wustl.edu	37	12	49953005	49953005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	49953005	49953005	C	T	SNP	MCRS1	ENST00000357123	human	ensembl	74_37	-1	known	missense	c.1205	p.R402Q	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MCRS1	HGNC	ENSG00000187778				44	0	0	42	4	8.69565
FAM186B	0	genome.wustl.edu	37	12	49994809	49994809	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	49994809	49994809	A	G	SNP	FAM186B	ENST00000257894	human	ensembl	74_37	-1	known	missense	c.614	p.M205T	0.001	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436				97	0	0	50	19	27.5362
KCNA1	0	genome.wustl.edu	37	12	5020649	5020649	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	5020649	5020649	C	T	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	silent	c.105	p.C35	1.000	prints_K_chnl_volt-dep_Kv1.3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				59	0	0	43	33	43.4211
KCNA1	0	genome.wustl.edu	37	12	5021254	5021254	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	5021254	5021254	T	C	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	missense	c.710	p.V237A	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				97	0	0	43	40	48.1928
KCNA1	0	genome.wustl.edu	37	12	5021268	5021268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	5021268	5021268	G	A	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	missense	c.724	p.A242T	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				108	0	0	47	37	44.0476
DIP2B	0	genome.wustl.edu	37	12	51122352	51122352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	51122352	51122352	G	A	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	missense	c.3532	p.A1178T	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084				76	0	0	42	22	34.375
SCN8A	0	genome.wustl.edu	37	12	52100214	52100214	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	52100214	52100214	G	A	SNP	SCN8A	ENST00000354534	human	ensembl	74_37	+1	known	silent	c.1350	p.A450	0.242	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876				14	0	0	7	6	46.1538
SCN8A	0	genome.wustl.edu	37	12	52115620	52115620	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	52115620	52115620	G	A	SNP	SCN8A	ENST00000354534	human	ensembl	74_37	+1	known	silent	c.1926	p.T642	0.777	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876				64	0	0	41	31	43.0556
KRT121P	0	genome.wustl.edu	37	12	52652187	52652187	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	52652187	52652187	C	A	SNP	KRT121P	ENST00000529785	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KRT121P	HGNC	ENSG00000135477				46	0	0	29	21	42
KRT84	0	genome.wustl.edu	37	12	52776272	52776272	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	52776272	52776272	G	A	SNP	KRT84	ENST00000257951	human	ensembl	74_37	-1	known	silent	c.861	p.N287	0.171	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT84	HGNC	ENSG00000161849				69	0	0	26	18	40.9091
KRT75	0	genome.wustl.edu	37	12	52818457	52818457	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	52818457	52818457	G	A	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	silent	c.1500	p.S500	0.044	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				178	1	0.558659	122	46	27.381
SPRYD3	0	genome.wustl.edu	37	12	53462055	53462055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	53462055	53462055	C	T	SNP	SPRYD3	ENST00000301463	human	ensembl	74_37	-1	known	missense	c.727	p.V243M	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	SPRYD3	HGNC	ENSG00000167778				202	1	0.492611	106	63	37.2781
AAAS	0	genome.wustl.edu	37	12	53702980	53702980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	53702980	53702980	C	T	SNP	AAAS	ENST00000209873	human	ensembl	74_37	-1	known	missense	c.896	p.G299D	1.000	smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AAAS	HGNC	ENSG00000094914				211	0	0	184	18	8.91089
PCBP2	0	genome.wustl.edu	37	12	53849156	53849156	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	53849156	53849156	T	C	SNP	PCBP2	ENST00000603815	human	ensembl	74_37	+1	known	splice_site	c.93+2	e2+2	1.000	-	-	-	no_errors	PCBP2	HGNC	ENSG00000197111				78	0	0	31	17	35.4167
NCKAP1L	0	genome.wustl.edu	37	12	54913106	54913106	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	54913106	54913106	T	C	SNP	NCKAP1L	ENST00000293373	human	ensembl	74_37	+1	known	missense	c.1615	p.S539P	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338				99	0	0	46	25	35.2113
OR6C74	0	genome.wustl.edu	37	12	55641456	55641456	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	55641456	55641456	C	T	SNP	OR6C74	ENST00000343870	human	ensembl	74_37	+1	known	missense	c.385	p.H129Y	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C74	HGNC	ENSG00000197706				166	0	0	62	41	39.8058
OR6C74	0	genome.wustl.edu	37	12	55641521	55641521	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	55641521	55641521	C	T	SNP	OR6C74	ENST00000343870	human	ensembl	74_37	+1	known	silent	c.450	p.G150	0.081	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C74	HGNC	ENSG00000197706				110	0	0	36	17	32.0755
OR2AP1	0	genome.wustl.edu	37	12	55968582	55968582	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	55968582	55968582	G	A	SNP	OR2AP1	ENST00000321688	human	ensembl	74_37	+1	known	silent	c.384	p.L128	0.996	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2AP1	HGNC	ENSG00000179615				25	0	0	12	4	25
ITGA7	0	genome.wustl.edu	37	12	56101281	56101281	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	56101281	56101281	C	T	SNP	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	silent	c.186	p.L62	0.986	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424				51	0	0	45	8	15.0943
SMARCC2	0	genome.wustl.edu	37	12	56565655	56565655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	56565655	56565655	C	T	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	missense	c.1900	p.E634K	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_Chromodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				59	0	0	36	25	40.9836
TIMELESS	0	genome.wustl.edu	37	12	56817451	56817451	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	56817451	56817451	T	C	SNP	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	silent	c.2007	p.E669	0.019	NULL	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602				61	0	0	35	9	20.4545
LRP1	0	genome.wustl.edu	37	12	57537507	57537507	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	57537507	57537507	T	C	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.374	p.V125A	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				73	0	0	84	6	6.66667
LRP1	0	genome.wustl.edu	37	12	57539115	57539115	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	57539115	57539115	G	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.683	p.R228Q	0.993	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384				55	0	0	29	17	36.9565
VWF	0	genome.wustl.edu	37	12	6220099	6220099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	6220099	6220099	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.256	p.V86M	0.993	pirsf_VWF,pfam_VWF_type-D,smart_VWF_type-D	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				149	0	0	92	25	21.3675
LDHAL6CP	0	genome.wustl.edu	37	12	63398225	63398225	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	63398225	63398225	C	T	SNP	LDHAL6CP	ENST00000550738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	LDHAL6CP	HGNC	ENSG00000250517				34	0	0	8	7	46.6667
TMEM5-AS1	0	genome.wustl.edu	37	12	64215902	64215902	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	64215902	64215902	T	C	SNP	TMEM5-AS1	ENST00000546214	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TMEM5-AS1	HGNC	ENSG00000255850				43	0	0	26	8	23.5294
TNFRSF1A	0	genome.wustl.edu	37	12	6438527	6438527	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	6438527	6438527	G	A	SNP	TNFRSF1A	ENST00000162749	human	ensembl	74_37	-1	known	missense	c.1319	p.A440V	0.026	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_1A	-	no_errors	TNFRSF1A	HGNC	ENSG00000067182				11	0	0	6	4	40
MSRB3	0	genome.wustl.edu	37	12	65857048	65857048	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	65857048	65857048	C	T	SNP	MSRB3	ENST00000355192	human	ensembl	74_37	+1	known	silent	c.525	p.A175	0.000	NULL	pfam_Met_Sox_Rdtase_MsrB,superfamily_Mss4-like,tigrfam_Met_Sox_Rdtase_MsrB	-	no_errors	MSRB3	HGNC	ENSG00000174099				69	0	0	39	21	35
IFFO1	0	genome.wustl.edu	37	12	6658950	6658950	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	6658950	6658950	T	C	SNP	IFFO1	ENST00000356896	human	ensembl	74_37	-1	known	missense	c.1043	p.N348S	1.000	NULL	NULL	-	no_errors	IFFO1	HGNC	ENSG00000010295				34	0	0	35	19	35.1852
NOP2	0	genome.wustl.edu	37	12	6675296	6675296	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	6675296	6675296	T	C	SNP	NOP2	ENST00000322166	human	ensembl	74_37	-1	known	missense	c.445	p.N149D	0.000	NULL	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rRNA_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641				33	0	0	12	7	36.8421
CHD4	0	genome.wustl.edu	37	12	6704507	6704507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	6704507	6704507	G	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.2114	p.T705I	0.882	superfamily_P-loop_NTPase	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				121	0	0	52	24	31.5789
NINJ2	0	genome.wustl.edu	37	12	675144	675144	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	675144	675144	C	A	SNP	NINJ2	ENST00000305108	human	ensembl	74_37	-1	known	silent	c.372	p.V124	0.991	pfam_Ninjurin	pfam_Ninjurin	-	no_errors	NINJ2	HGNC	ENSG00000171840				78	0	0	42	22	34.375
MDM1	0	genome.wustl.edu	37	12	68696460	68696460	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	68696460	68696460	A	G	SNP	MDM1	ENST00000303145	human	ensembl	74_37	-1	known	missense	c.1912	p.Y638H	0.503	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554				90	0	0	52	29	35.8025
PTMS	0	genome.wustl.edu	37	12	6879359	6879359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	6879359	6879359	C	T	SNP	PTMS	ENST00000389462	human	ensembl	74_37	+1	known	missense	c.310	p.R104C	1.000	NULL	pfam_Pro/parathymosin	-	no_errors	PTMS	HGNC	ENSG00000159335				36	0	0	29	14	32.5581
CPSF6	0	genome.wustl.edu	37	12	69653833	69653833	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	69653833	69653833	G	C	SNP	CPSF6	ENST00000266679	human	ensembl	74_37	+1	known	missense	c.1436	p.G479A	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF6	HGNC	ENSG00000111605				70	0	0	32	13	28.8889
DSTNP2	0	genome.wustl.edu	37	12	6994100	6994100	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	6994100	6994100	G	A	SNP	DSTNP2	ENST00000602547	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.587	-	-	-	no_errors	DSTNP2	HGNC	ENSG00000248593				40	0	0	17	9	34.6154
BEST3	0	genome.wustl.edu	37	12	70066743	70066743	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	70066743	70066743	T	C	SNP	BEST3	ENST00000330891	human	ensembl	74_37	-1	known	silent	c.870	p.V290	0.206	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325				49	0	0	32	19	37.2549
LGR5	0	genome.wustl.edu	37	12	71977878	71977878	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	71977878	71977878	C	T	SNP	LGR5	ENST00000266674	human	ensembl	74_37	+1	known	silent	c.2088	p.A696	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LGR5	HGNC	ENSG00000139292				236	0	0	138	70	33.6538
ZFC3H1	0	genome.wustl.edu	37	12	72013159	72013159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	72013159	72013159	G	A	SNP	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	missense	c.5080	p.R1694W	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				41	0	0	22	15	40.5405
CD163	0	genome.wustl.edu	37	12	7649477	7649477	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	7649477	7649477	T	C	SNP	CD163	ENST00000359156	human	ensembl	74_37	-1	known	missense	c.1031	p.Q344R	0.004	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	CD163	HGNC	ENSG00000177575				87	0	0	49	7	12.5
GDF3	0	genome.wustl.edu	37	12	7843257	7843257	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	7843257	7843257	G	A	SNP	GDF3	ENST00000329913	human	ensembl	74_37	-1	known	silent	c.312	p.C104	0.773	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF3	HGNC	ENSG00000184344				85	0	0	73	17	18.8889
NANOG	0	genome.wustl.edu	37	12	7947660	7947660	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	7947660	7947660	A	G	SNP	NANOG	ENST00000229307	human	ensembl	74_37	+1	known	missense	c.887	p.Y296C	0.004	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	NANOG	HGNC	ENSG00000111704				107	0	0	54	14	20.5882
CLEC4A	0	genome.wustl.edu	37	12	8290783	8290783	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	8290783	8290783	T	C	SNP	CLEC4A	ENST00000229332	human	ensembl	74_37	+1	known	missense	c.614	p.V205A	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4A	HGNC	ENSG00000111729				108	0	0	37	27	42.1875
FAM90A1	0	genome.wustl.edu	37	12	8374786	8374786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	8374786	8374786	G	A	SNP	FAM90A1	ENST00000307435	human	ensembl	74_37	-1	known	missense	c.1027	p.R343C	0.000	NULL	NULL	-	no_errors	FAM90A1	HGNC	ENSG00000171847				66	0	0	60	13	17.8082
C12orf29	0	genome.wustl.edu	37	12	88442177	88442177	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	88442177	88442177	A	G	SNP	C12orf29	ENST00000356891	human	ensembl	74_37	+1	known	missense	c.956	p.K319R	1.000	NULL	NULL	-	no_errors	C12orf29	HGNC	ENSG00000133641				34	0	0	7	4	36.3636
CEP290	0	genome.wustl.edu	37	12	88505561	88505561	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	88505561	88505561	G	A	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	silent	c.2133	p.T711	0.997	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				30	0	0	22	9	29.0323
DCN	0	genome.wustl.edu	37	12	91539866	91539866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	91539866	91539866	C	T	SNP	DCN	ENST00000052754	human	ensembl	74_37	-1	known	missense	c.1049	p.R350H	1.000	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	DCN	HGNC	ENSG00000011465				120	0	0	88	9	9.27835
A2M	0	genome.wustl.edu	37	12	9229987	9229987	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	9229987	9229987	G	A	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	silent	c.3306	p.S1102	0.994	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				30	0	0	10	12	54.5455
BTG1	0	genome.wustl.edu	37	12	92539222	92539222	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	92539222	92539222	C	T	SNP	BTG1	ENST00000256015	human	ensembl	74_37	-1	known	silent	c.90	p.G30	1.000	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	BTG1	HGNC	ENSG00000133639				51	0	0	36	30	45.4545
A2M	0	genome.wustl.edu	37	12	9264788	9264788	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	9264788	9264788	G	T	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	silent	c.450	p.S150	0.788	pfam_A2M_N,superfamily_Cupredoxin	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				59	0	0	25	12	32.4324
TMCC3	0	genome.wustl.edu	37	12	94976202	94976202	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	94976202	94976202	A	G	SNP	TMCC3	ENST00000261226	human	ensembl	74_37	-1	known	missense	c.191	p.V64A	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704				155	0	0	48	44	47.8261
USP44	0	genome.wustl.edu	37	12	95918558	95918558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	95918558	95918558	C	T	SNP	USP44	ENST00000258499	human	ensembl	74_37	-1	known	missense	c.1631	p.R544H	0.997	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP44	HGNC	ENSG00000136014				71	0	0	42	6	12.5
PGAM1P5	0	genome.wustl.edu	37	12	96066236	96066236	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	96066236	96066236	G	A	SNP	PGAM1P5	ENST00000552554	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PGAM1P5	HGNC	ENSG00000257150				109	0	0	53	33	38.3721
AMDHD1	0	genome.wustl.edu	37	12	96361564	96361564	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	96361564	96361564	C	T	SNP	AMDHD1	ENST00000266736	human	ensembl	74_37	+1	known	silent	c.1224	p.G408	0.977	superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite,tigrfam_HutI	-	no_errors	AMDHD1	HGNC	ENSG00000139344				32	0	0	9	7	43.75
LTA4H	0	genome.wustl.edu	37	12	96429215	96429215	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	96429215	96429215	A	C	SNP	LTA4H	ENST00000228740	human	ensembl	74_37	-1	known	missense	c.83	p.V28G	1.000	pfam_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N,tigrfam_Leukotriene_A4_hydrolase	-	no_errors	LTA4H	HGNC	ENSG00000111144				16	0	0	12	8	40
CD69	0	genome.wustl.edu	37	12	9907755	9907755	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	9907755	9907755	T	C	SNP	CD69	ENST00000228434	human	ensembl	74_37	-1	known	missense	c.290	p.Y97C	0.958	pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD69	HGNC	ENSG00000110848				90	0	0	46	35	43.2099
APAF1	0	genome.wustl.edu	37	12	99126412	99126412	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	99126412	99126412	C	T	SNP	APAF1	ENST00000552929	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	APAF1	HGNC	ENSG00000120868				8	0	0	2	4	66.6667
ANKS1B	0	genome.wustl.edu	37	12	99638168	99638168	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	99638168	99638168	C	A	SNP	ANKS1B	ENST00000329257	human	ensembl	74_37	-1	known	missense	c.2371	p.D791Y	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046				30	0	0	7	6	46.1538
ZIC2	0	genome.wustl.edu	37	13	100637714	100637714	+	Silent	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	100637714	100637714	A	T	SNP	ZIC2	ENST00000376335	human	ensembl	74_37	+1	known	silent	c.1377	p.A459	0.338	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC2	HGNC	ENSG00000043355				11	0	0	13	7	35
NALCN	0	genome.wustl.edu	37	13	101757264	101757264	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	101757264	101757264	T	C	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.2617	p.T873A	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				53	0	0	30	16	34.7826
TPP2	0	genome.wustl.edu	37	13	103290596	103290596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	103290596	103290596	G	A	SNP	TPP2	ENST00000376065	human	ensembl	74_37	+1	known	missense	c.1844	p.G615D	1.000	NULL	pfam_Peptidase_S8/S53_dom,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900				103	0	0	41	22	34.9206
ERCC5	0	genome.wustl.edu	37	13	103518251	103518251	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	103518251	103518251	A	G	SNP	ERCC5	ENST00000355739	human	ensembl	74_37	+1	known	missense	c.2189	p.D730G	1.000	prints_XPG/Rad2_eukaryotes,tigrfam_XPG/Rad2_eukaryotes	pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2_eukaryotes,prints_XPG/Rad2,tigrfam_XPG/Rad2_eukaryotes	-	no_errors	ERCC5	HGNC	ENSG00000134899				101	0	0	71	5	6.57895
MYO16	0	genome.wustl.edu	37	13	109779686	109779686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	109779686	109779686	C	T	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.3773	p.A1258V	0.340	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				35	0	0	18	13	41.9355
MYO16	0	genome.wustl.edu	37	13	109779790	109779790	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	109779790	109779790	C	T	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.3877	p.R1293W	0.997	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				55	0	0	19	14	42.4242
MYO16	0	genome.wustl.edu	37	13	109793423	109793423	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	109793423	109793423	C	T	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	silent	c.4797	p.P1599	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				12	0	0	4	3	42.8571
IRS2	0	genome.wustl.edu	37	13	110434515	110434515	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	110434515	110434515	C	T	SNP	IRS2	ENST00000375856	human	ensembl	74_37	-1	known	missense	c.3886	p.A1296T	0.015	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS2	HGNC	ENSG00000185950				19	0	0	28	11	28.2051
IRS2	0	genome.wustl.edu	37	13	110436740	110436740	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	110436740	110436740	C	T	SNP	IRS2	ENST00000375856	human	ensembl	74_37	-1	known	missense	c.1661	p.R554H	0.501	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS2	HGNC	ENSG00000185950				44	0	0	25	16	39.0244
ING1	0	genome.wustl.edu	37	13	111371744	111371744	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	111371744	111371744	G	A	SNP	ING1	ENST00000375774	human	ensembl	74_37	+1	known	missense	c.734	p.R245H	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487				80	0	0	55	47	46.0784
TUBGCP3	0	genome.wustl.edu	37	13	113140461	113140461	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	113140461	113140461	A	G	SNP	TUBGCP3	ENST00000261965	human	ensembl	74_37	-1	known	missense	c.2570	p.I857T	0.893	NULL	pfam_TUBGCP	-	no_errors	TUBGCP3	HGNC	ENSG00000126216				42	0	0	12	11	47.8261
TMCO3	0	genome.wustl.edu	37	13	114188430	114188430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	114188430	114188430	C	T	SNP	TMCO3	ENST00000434316	human	ensembl	74_37	+1	known	missense	c.1414	p.L472F	0.986	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403				153	1	0.649351	55	4	6.77966
TMCO3	0	genome.wustl.edu	37	13	114188435	114188435	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	114188435	114188435	A	T	SNP	TMCO3	ENST00000434316	human	ensembl	74_37	+1	known	missense	c.1419	p.L473F	0.149	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403				152	0	0	56	4	6.66667
TMEM255B	0	genome.wustl.edu	37	13	114469097	114469097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	114469097	114469097	C	T	SNP	TMEM255B	ENST00000375353	human	ensembl	74_37	+1	known	missense	c.56	p.S19L	0.137	NULL	NULL	-	no_errors	TMEM255B	HGNC	ENSG00000184497				120	1	0.826446	87	31	26.2712
CDC16	0	genome.wustl.edu	37	13	115016110	115016110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	115016110	115016110	C	T	SNP	CDC16	ENST00000356221	human	ensembl	74_37	+1	known	missense	c.1058	p.A353V	0.998	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC16	HGNC	ENSG00000130177				101	0	0	36	29	44.6154
PSPC1	0	genome.wustl.edu	37	13	20315777	20315777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	20315777	20315777	C	T	SNP	PSPC1	ENST00000338910	human	ensembl	74_37	-1	known	missense	c.980	p.R327H	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390				82	0	0	16	15	48.3871
GJA3	0	genome.wustl.edu	37	13	20716876	20716876	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	20716876	20716876	C	T	SNP	GJA3	ENST00000241125	human	ensembl	74_37	-1	known	nonsense	c.552	p.W184*	1.000	pfam_Connexin_CCC,prints_Connexin,prints_Connexin46	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin46	-	no_errors	GJA3	HGNC	ENSG00000121743				80	0	0	53	31	36.9048
XPO4	0	genome.wustl.edu	37	13	21382668	21382668	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	21382668	21382668	G	A	SNP	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	nonsense	c.1546	p.Q516*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953				48	0	0	15	15	50
XPO4	0	genome.wustl.edu	37	13	21429891	21429891	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	21429891	21429891	C	T	SNP	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	missense	c.331	p.V111I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953				126	0	0	37	24	39.3443
LATS2	0	genome.wustl.edu	37	13	21562928	21562928	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	21562928	21562928	G	T	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.991	p.L331M	0.001	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				45	0	0	25	14	35.8974
LATS2	0	genome.wustl.edu	37	13	21563168	21563168	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	21563168	21563168	C	T	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.751	p.A251T	0.006	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				19	0	0	8	4	33.3333
SACS	0	genome.wustl.edu	37	13	23905041	23905041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	23905041	23905041	C	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.12974	p.R4325Q	1.000	superfamily_DnaJ_domain,pfscan_DnaJ_domain	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				186	0	0	141	14	9.03226
CENPJ	0	genome.wustl.edu	37	13	25484017	25484017	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	25484017	25484017	G	A	SNP	CENPJ	ENST00000381884	human	ensembl	74_37	-1	known	missense	c.776	p.A259V	0.090	NULL	pfam_Tcp10_C_dom	-	no_errors	CENPJ	HGNC	ENSG00000151849				87	0	0	42	24	36.3636
PAN3	0	genome.wustl.edu	37	13	28846132	28846132	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	28846132	28846132	G	A	SNP	PAN3	ENST00000380958	human	ensembl	74_37	+1	known	missense	c.1973	p.C658Y	1.000	superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_dom	-	no_errors	PAN3	HGNC	ENSG00000152520				71	0	0	32	22	40.7407
MTUS2	0	genome.wustl.edu	37	13	30066788	30066788	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	30066788	30066788	A	G	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.3541	p.M1181V	1.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				45	0	0	15	9	37.5
SLC7A1	0	genome.wustl.edu	37	13	30110247	30110247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	30110247	30110247	G	A	SNP	SLC7A1	ENST00000380752	human	ensembl	74_37	-1	known	missense	c.79	p.R27W	1.000	pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A1	HGNC	ENSG00000139514				100	0	0	61	4	6.15385
B3GALTL	0	genome.wustl.edu	37	13	31897899	31897899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	31897899	31897899	G	A	SNP	B3GALTL	ENST00000343307	human	ensembl	74_37	+1	known	missense	c.1196	p.S399N	1.000	pfam_Fringe-like	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676				195	0	0	93	69	42.5926
RXFP2	0	genome.wustl.edu	37	13	32366044	32366044	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	32366044	32366044	A	C	SNP	RXFP2	ENST00000298386	human	ensembl	74_37	+1	known	missense	c.1247	p.N416T	0.999	prints_Gphrmn_rcpt_fam	pfam_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt,prints_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	-	no_errors	RXFP2	HGNC	ENSG00000133105				80	0	0	34	17	33.3333
FRY	0	genome.wustl.edu	37	13	32759208	32759208	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	32759208	32759208	A	G	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.3242	p.D1081G	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				152	0	0	62	41	39.8058
FRY	0	genome.wustl.edu	37	13	32839600	32839600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	32839600	32839600	G	A	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.7793	p.R2598H	0.001	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				90	0	0	33	20	37.7358
FREM2	0	genome.wustl.edu	37	13	39265389	39265389	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	39265389	39265389	C	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.3908	p.T1303M	1.000	superfamily_Cadherin-like	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				191	0	0	114	6	5
WBP4	0	genome.wustl.edu	37	13	41656921	41656921	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	41656921	41656921	A	G	SNP	WBP4	ENST00000379487	human	ensembl	74_37	+1	known	silent	c.1002	p.K334	1.000	NULL	pfam_WW_dom,pfam_Znf_U1-C,superfamily_WW_dom,smart_Znf_U1,smart_WW_dom,pfscan_WW_dom,pfscan_Znf_C2H2_matrin	-	no_errors	WBP4	HGNC	ENSG00000120688				73	0	0	34	21	38.1818
TNFSF11	0	genome.wustl.edu	37	13	43180821	43180821	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	43180821	43180821	T	C	SNP	TNFSF11	ENST00000239849	human	ensembl	74_37	+1	known	missense	c.721	p.Y241H	1.000	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	-	no_errors	TNFSF11	HGNC	ENSG00000120659				109	0	0	46	40	46.5116
CCDC122	0	genome.wustl.edu	37	13	44434096	44434096	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	44434096	44434096	A	G	SNP	CCDC122	ENST00000281508	human	ensembl	74_37	-1	known	silent	c.267	p.H89	0.471	NULL	NULL	-	no_errors	CCDC122	HGNC	ENSG00000151773				62	0	0	25	10	28.5714
SPERT	0	genome.wustl.edu	37	13	46287328	46287328	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	46287328	46287328	C	T	SNP	SPERT	ENST00000310521	human	ensembl	74_37	+1	known	silent	c.168	p.A56	0.848	NULL	NULL	-	no_errors	SPERT	HGNC	ENSG00000174015				45	0	0	22	15	40.5405
ZC3H13	0	genome.wustl.edu	37	13	46542050	46542050	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	46542050	46542050	G	A	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	nonsense	c.3910	p.R1304*	0.991	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				167	0	0	66	22	25
MED4	0	genome.wustl.edu	37	13	48651317	48651317	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	48651317	48651317	A	G	SNP	MED4	ENST00000258648	human	ensembl	74_37	-1	known	silent	c.771	p.I257	1.000	NULL	pfam_Mediator_Med4	-	no_errors	MED4	HGNC	ENSG00000136146				71	0	0	33	21	38.8889
LPAR6	0	genome.wustl.edu	37	13	48986379	48986379	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	48986379	48986379	T	C	SNP	LPAR6	ENST00000345941	human	ensembl	74_37	-1	known	missense	c.181	p.M61V	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	LPAR6	HGNC	ENSG00000139679				81	0	0	44	3	6.38298
THSD1	0	genome.wustl.edu	37	13	52972005	52972005	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	52972005	52972005	G	T	SNP	THSD1	ENST00000258613	human	ensembl	74_37	-1	known	missense	c.383	p.P128H	0.999	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD1	HGNC	ENSG00000136114				143	0	0	51	30	37.037
HNRNPA1L2	0	genome.wustl.edu	37	13	53217089	53217089	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	53217089	53217089	C	T	SNP	HNRNPA1L2	ENST00000342657	human	ensembl	74_37	+1	known	silent	c.462	p.D154	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_HnRNPA1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA1L2	HGNC	ENSG00000139675				117	0	0	57	29	33.7209
PCDH17	0	genome.wustl.edu	37	13	58240906	58240906	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	58240906	58240906	G	C	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.2736	p.M912I	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				66	0	0	31	20	39.2157
TDRD3	0	genome.wustl.edu	37	13	61109406	61109406	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	61109406	61109406	T	C	SNP	TDRD3	ENST00000471710	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TDRD3	HGNC	ENSG00000083544				48	0	0	13	16	55.1724
BORA	0	genome.wustl.edu	37	13	73320157	73320157	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	73320157	73320157	A	G	SNP	BORA	ENST00000390667	human	ensembl	74_37	+1	known	missense	c.814	p.I272V	0.001	NULL	prints_Aurora_borealis_protien	-	no_errors	BORA	HGNC	ENSG00000136122				113	0	0	56	19	25.3333
BORA	0	genome.wustl.edu	37	13	73320842	73320842	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	73320842	73320842	G	T	SNP	BORA	ENST00000390667	human	ensembl	74_37	+1	known	missense	c.1075	p.G359C	0.074	NULL	prints_Aurora_borealis_protien	-	no_errors	BORA	HGNC	ENSG00000136122				148	0	0	63	43	40.566
MYCBP2	0	genome.wustl.edu	37	13	77664391	77664391	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	77664391	77664391	T	C	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.10375	p.T3459A	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				83	0	0	27	12	30.7692
SCEL	0	genome.wustl.edu	37	13	78130014	78130014	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	78130014	78130014	T	C	SNP	SCEL	ENST00000349847	human	ensembl	74_37	+1	known	missense	c.4	p.S2P	1.000	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155				61	0	0	22	10	31.25
SLITRK1	0	genome.wustl.edu	37	13	84454996	84454996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	84454996	84454996	C	T	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.647	p.C216Y	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				77	0	0	45	21	31.8182
GPC5	0	genome.wustl.edu	37	13	92408615	92408615	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	92408615	92408615	T	C	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	silent	c.1221	p.A407	0.918	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				116	0	0	55	15	21.4286
DCT	0	genome.wustl.edu	37	13	95121135	95121135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	95121135	95121135	G	A	SNP	DCT	ENST00000446125	human	ensembl	74_37	-1	known	missense	c.460	p.P154S	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166				268	0	0	175	90	33.9623
ABCC4	0	genome.wustl.edu	37	13	95813534	95813534	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	95813534	95813534	G	A	SNP	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	silent	c.2364	p.Y788	0.734	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				78	0	0	16	16	50
ABCC4	0	genome.wustl.edu	37	13	95860172	95860172	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	95860172	95860172	T	C	SNP	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	missense	c.793	p.T265A	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				101	0	0	38	35	47.9452
MBNL2	0	genome.wustl.edu	37	13	98009806	98009806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	98009806	98009806	C	T	SNP	MBNL2	ENST00000376673	human	ensembl	74_37	+1	known	missense	c.875	p.A292V	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	MBNL2	HGNC	ENSG00000139793				126	0	0	90	41	31.2977
RNF113B	0	genome.wustl.edu	37	13	98828627	98828627	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	98828627	98828627	C	T	SNP	RNF113B	ENST00000267291	human	ensembl	74_37	-1	known	silent	c.864	p.P288	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113B	HGNC	ENSG00000139797				151	0	0	85	56	39.7163
RNF113B	0	genome.wustl.edu	37	13	98829348	98829348	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	98829348	98829348	C	T	SNP	RNF113B	ENST00000267291	human	ensembl	74_37	-1	known	missense	c.143	p.S48N	0.004	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113B	HGNC	ENSG00000139797				23	0	0	28	8	22.2222
EML1	0	genome.wustl.edu	37	14	100377764	100377764	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	100377764	100377764	A	G	SNP	EML1	ENST00000334192	human	ensembl	74_37	+1	known	missense	c.1402	p.N468D	1.000	superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629				109	0	0	43	45	51.1364
RTL1	0	genome.wustl.edu	37	14	101347477	101347477	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	101347477	101347477	T	C	SNP	RTL1	ENST00000534062	human	ensembl	74_37	-1	known	missense	c.3649	p.N1217D	0.000	NULL	pfam_Retrotrans_gag_dom,superfamily_Peptidase_aspartic_dom	-	no_errors	RTL1	HGNC	ENSG00000254656				14	0	0	5	4	44.4444
DYNC1H1	0	genome.wustl.edu	37	14	102505979	102505979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	102505979	102505979	C	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.11600	p.A3867V	0.974	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				208	0	0	170	14	7.6087
TECPR2	0	genome.wustl.edu	37	14	102918789	102918789	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	102918789	102918789	C	T	SNP	TECPR2	ENST00000359520	human	ensembl	74_37	+1	known	silent	c.3465	p.S1155	0.002	superfamily_RCC1/BLIP-II	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_RCC1/BLIP-II,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663				44	0	0	34	6	15
RCOR1	0	genome.wustl.edu	37	14	103174911	103174911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	103174911	103174911	G	A	SNP	RCOR1	ENST00000262241	human	ensembl	74_37	+1	known	missense	c.770	p.R257Q	0.995	NULL	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom,prints_Antifreeze_1	-	no_errors	RCOR1	HGNC	ENSG00000089902				151	0	0	92	75	44.9102
TRAF3	0	genome.wustl.edu	37	14	103372097	103372097	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	103372097	103372097	T	C	SNP	TRAF3	ENST00000392745	human	ensembl	74_37	+1	known	silent	c.1683	p.D561	1.000	pfam_MATH,superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF3	HGNC	ENSG00000131323				49	0	0	29	17	36.9565
CDC42BPB	0	genome.wustl.edu	37	14	103449935	103449935	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	103449935	103449935	C	T	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	silent	c.849	p.A283	0.056	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752				84	0	0	84	6	6.66667
EIF5	0	genome.wustl.edu	37	14	103803104	103803104	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	103803104	103803104	C	T	SNP	EIF5	ENST00000216554	human	ensembl	74_37	+1	known	missense	c.245	p.A82V	1.000	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,smart_Transl_init_fac_IF2/IF5	pfam_Transl_init_fac_IF2/IF5,pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5,smart_W2_domain	-	no_errors	EIF5	HGNC	ENSG00000100664				93	0	0	33	36	52.1739
CEP170B	0	genome.wustl.edu	37	14	105353975	105353975	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	105353975	105353975	C	T	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	silent	c.3402	p.D1134	0.019	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814				9	0	0	7	5	41.6667
AHNAK2	0	genome.wustl.edu	37	14	105404879	105404879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	105404879	105404879	G	A	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.16909	p.P5637S	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				29	0	0	14	8	36.3636
BTBD6	0	genome.wustl.edu	37	14	105716119	105716119	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	105716119	105716119	G	A	SNP	BTBD6	ENST00000392554	human	ensembl	74_37	+1	known	missense	c.568	p.V190I	1.000	smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD6	HGNC	ENSG00000184887				50	0	0	29	23	44.2308
TEP1	0	genome.wustl.edu	37	14	20841863	20841863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	20841863	20841863	C	T	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.6578	p.C2193Y	0.979	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				75	0	0	43	38	46.9136
RNASE2	0	genome.wustl.edu	37	14	21424363	21424363	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	21424363	21424363	C	T	SNP	RNASE2	ENST00000304625	human	ensembl	74_37	+1	known	nonsense	c.433	p.R145*	0.000	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE2	HGNC	ENSG00000169385				165	0	0	75	51	40.4762
ARHGEF40	0	genome.wustl.edu	37	14	21542374	21542374	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	21542374	21542374	T	G	SNP	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	missense	c.485	p.L162R	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				85	0	0	54	16	22.8571
ARHGEF40	0	genome.wustl.edu	37	14	21549845	21549845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	21549845	21549845	C	T	SNP	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	missense	c.2818	p.R940C	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				17	0	0	11	3	21.4286
ARHGEF40	0	genome.wustl.edu	37	14	21549929	21549929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	21549929	21549929	C	T	SNP	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	missense	c.2902	p.R968W	0.782	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				13	0	0	7	13	65
CHD8	0	genome.wustl.edu	37	14	21896109	21896109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	21896109	21896109	G	A	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	missense	c.1520	p.A507V	0.990	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				71	0	0	48	29	37.6623
TOX4	0	genome.wustl.edu	37	14	21960775	21960775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	21960775	21960775	C	T	SNP	TOX4	ENST00000262709	human	ensembl	74_37	+1	known	missense	c.1000	p.P334S	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX4	HGNC	ENSG00000092203				199	0	0	68	54	44.2623
PSMB11	0	genome.wustl.edu	37	14	23511636	23511636	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	23511636	23511636	C	T	SNP	PSMB11	ENST00000408907	human	ensembl	74_37	+1	known	missense	c.202	p.R68C	0.977	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB11	HGNC	ENSG00000222028				101	0	0	52	35	40.2299
MYH6	0	genome.wustl.edu	37	14	23853810	23853810	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	23853810	23853810	G	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	silent	c.5406	p.A1802	0.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				142	0	0	133	8	5.67376
LRRC16B	0	genome.wustl.edu	37	14	24529193	24529193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	24529193	24529193	G	A	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	missense	c.1883	p.R628H	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				150	0	0	135	18	11.7647
TSSK4	0	genome.wustl.edu	37	14	24676542	24676542	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	24676542	24676542	C	T	SNP	TSSK4	ENST00000339917	human	ensembl	74_37	+1	known	nonsense	c.661	p.R221*	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TSSK4	HGNC	ENSG00000139908				155	0	0	66	55	45.4545
TINF2	0	genome.wustl.edu	37	14	24709992	24709992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	24709992	24709992	G	A	SNP	TINF2	ENST00000267415	human	ensembl	74_37	-1	known	missense	c.694	p.P232S	0.924	NULL	NULL	-	no_errors	TINF2	HGNC	ENSG00000092330				113	0	0	98	6	5.76923
TGM1	0	genome.wustl.edu	37	14	24724429	24724429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	24724429	24724429	G	A	SNP	TGM1	ENST00000206765	human	ensembl	74_37	-1	known	missense	c.1676	p.T559I	0.992	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295				125	0	0	49	36	42.3529
NYNRIN	0	genome.wustl.edu	37	14	24878156	24878156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	24878156	24878156	G	A	SNP	NYNRIN	ENST00000382554	human	ensembl	74_37	+1	known	missense	c.1156	p.A386T	0.961	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978				31	0	0	21	8	27.5862
GZMH	0	genome.wustl.edu	37	14	25075937	25075937	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	25075937	25075937	G	C	SNP	GZMH	ENST00000216338	human	ensembl	74_37	-1	known	missense	c.613	p.P205A	0.932	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	GZMH	HGNC	ENSG00000100450				107	0	0	43	31	41.8919
GZMB	0	genome.wustl.edu	37	14	25102239	25102239	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	25102239	25102239	G	C	SNP	GZMB	ENST00000382542	human	ensembl	74_37	-1	known	missense	c.187	p.P63A	0.987	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	GZMB	HGNC	ENSG00000100453				163	0	0	123	13	9.55882
NOVA1	0	genome.wustl.edu	37	14	26917784	26917784	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	26917784	26917784	G	A	SNP	NOVA1	ENST00000539517	human	ensembl	74_37	-1	known	missense	c.905	p.A302V	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA1	HGNC	ENSG00000139910				57	0	0	40	7	14.8936
STRN3	0	genome.wustl.edu	37	14	31416424	31416424	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	31416424	31416424	C	T	SNP	STRN3	ENST00000357479	human	ensembl	74_37	-1	known	silent	c.588	p.R196	0.999	pfam_Striatin_N	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN3	HGNC	ENSG00000196792				86	0	0	40	28	41.1765
HECTD1	0	genome.wustl.edu	37	14	31575967	31575967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	31575967	31575967	G	A	SNP	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	missense	c.7111	p.R2371C	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				76	0	0	24	23	48.9362
HEATR5A	0	genome.wustl.edu	37	14	31795515	31795515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	31795515	31795515	G	A	SNP	HEATR5A	ENST00000389961	human	ensembl	74_37	-1	known	missense	c.3383	p.A1128V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493				106	0	0	47	25	34.7222
AKAP6	0	genome.wustl.edu	37	14	33015768	33015768	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	33015768	33015768	C	A	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	missense	c.1909	p.L637I	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				101	0	0	34	23	40.3509
AKAP6	0	genome.wustl.edu	37	14	33165210	33165210	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	33165210	33165210	A	T	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	missense	c.2894	p.D965V	1.000	smart_Spectrin/alpha-actinin	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				70	0	0	21	11	34.375
SSTR1	0	genome.wustl.edu	37	14	38679608	38679608	+	Silent	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	38679608	38679608	A	T	SNP	SSTR1	ENST00000267377	human	ensembl	74_37	+1	known	silent	c.1014	p.L338	0.977	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_1,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR1	HGNC	ENSG00000139874				140	0	0	77	39	33.6207
PNN	0	genome.wustl.edu	37	14	39650122	39650122	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	39650122	39650122	G	T	SNP	PNN	ENST00000216832	human	ensembl	74_37	+1	known	missense	c.1209	p.Q403H	1.000	NULL	pfam_Pinin_SDK_N,pfam_Pinin_SDK_MemA	-	no_errors	PNN	HGNC	ENSG00000100941				92	0	0	29	30	50.8475
PNN	0	genome.wustl.edu	37	14	39650888	39650888	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	39650888	39650888	G	T	SNP	PNN	ENST00000216832	human	ensembl	74_37	+1	known	nonsense	c.1975	p.G659*	1.000	NULL	pfam_Pinin_SDK_N,pfam_Pinin_SDK_MemA	-	no_errors	PNN	HGNC	ENSG00000100941				88	0	0	62	34	35.4167
MDGA2	0	genome.wustl.edu	37	14	47311144	47311144	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	47311144	47311144	G	T	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	missense	c.3068	p.P1023H	1.000	NULL	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				47	0	0	24	9	27.2727
NIN	0	genome.wustl.edu	37	14	51202298	51202298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	51202298	51202298	G	A	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.5813	p.T1938I	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				43	0	0	24	6	20
TRIM9	0	genome.wustl.edu	37	14	51560960	51560960	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	51560960	51560960	T	C	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.698	p.E233G	1.000	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				69	0	0	32	27	45.7627
TRIM9	0	genome.wustl.edu	37	14	51561225	51561225	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	51561225	51561225	A	G	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.433	p.F145L	1.000	NULL	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				24	0	0	19	11	36.6667
SLC35F4	0	genome.wustl.edu	37	14	58033243	58033243	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	58033243	58033243	T	C	SNP	SLC35F4	ENST00000339762	human	ensembl	74_37	-1	known	missense	c.1274	p.Y425C	1.000	NULL	pfam_DMT,pfam_SLC35_F1/F2/F6	-	no_errors	SLC35F4	HGNC	ENSG00000151812				15	0	0	14	5	26.3158
SLC38A6	0	genome.wustl.edu	37	14	61451485	61451485	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	61451485	61451485	T	C	SNP	SLC38A6	ENST00000354886	human	ensembl	74_37	+1	known	missense	c.274	p.S92P	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A6	HGNC	ENSG00000139974				104	1	0.952381	61	22	26.506
SYNE2	0	genome.wustl.edu	37	14	64596551	64596551	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	64596551	64596551	A	G	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.14071	p.K4691E	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				81	0	0	82	7	7.86517
SYNE2	0	genome.wustl.edu	37	14	64675598	64675598	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	64675598	64675598	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	silent	c.18324	p.Q6108	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				57	0	0	37	22	37.2881
HSPA2	0	genome.wustl.edu	37	14	65008542	65008542	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	65008542	65008542	C	T	SNP	HSPA2	ENST00000247207	human	ensembl	74_37	+1	known	silent	c.975	p.R325	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803				67	0	0	42	23	35.3846
PLEKHG3	0	genome.wustl.edu	37	14	65209941	65209941	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	65209941	65209941	C	T	SNP	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	silent	c.3180	p.R1060	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822				106	0	0	45	41	47.6744
SPTB	0	genome.wustl.edu	37	14	65260266	65260266	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	65260266	65260266	C	T	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	silent	c.2115	p.A705	0.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182				52	0	0	39	12	23.5294
TMEM229B	0	genome.wustl.edu	37	14	67940463	67940463	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	67940463	67940463	C	T	SNP	TMEM229B	ENST00000357461	human	ensembl	74_37	-1	known	missense	c.178	p.V60M	1.000	pfam_DUF1113_TMEM229	pfam_DUF1113_TMEM229	-	no_errors	TMEM229B	HGNC	ENSG00000198133				35	0	0	14	9	39.1304
PLEKHH1	0	genome.wustl.edu	37	14	68046484	68046484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	68046484	68046484	G	A	SNP	PLEKHH1	ENST00000329153	human	ensembl	74_37	+1	known	missense	c.3074	p.R1025Q	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690				24	0	0	16	7	30.4348
ZFYVE26	0	genome.wustl.edu	37	14	68251918	68251918	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	68251918	68251918	C	T	SNP	ZFYVE26	ENST00000347230	human	ensembl	74_37	-1	known	silent	c.3381	p.V1127	0.387	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121				81	0	0	63	8	11.2676
SRSF5	0	genome.wustl.edu	37	14	70237973	70237973	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	70237973	70237973	G	A	SNP	SRSF5	ENST00000394366	human	ensembl	74_37	+1	novel	missense	c.614	p.R205H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF5	HGNC	ENSG00000100650				157	0	0	117	15	11.3636
SMOC1	0	genome.wustl.edu	37	14	70459178	70459178	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	70459178	70459178	T	C	SNP	SMOC1	ENST00000361956	human	ensembl	74_37	+1	known	missense	c.571	p.F191L	0.955	NULL	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SMOC1	HGNC	ENSG00000198732				52	0	0	27	20	42.5532
SMOC1	0	genome.wustl.edu	37	14	70477655	70477655	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	70477655	70477655	C	A	SNP	SMOC1	ENST00000361956	human	ensembl	74_37	+1	known	silent	c.849	p.T283	0.955	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SMOC1	HGNC	ENSG00000198732				81	0	0	20	21	51.2195
PCNX	0	genome.wustl.edu	37	14	71570119	71570119	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	71570119	71570119	A	G	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.5828	p.K1943R	1.000	pfam_Pecanex	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				81	0	0	30	22	42.3077
SIPA1L1	0	genome.wustl.edu	37	14	72190597	72190597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	72190597	72190597	C	T	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.4505	p.T1502M	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				96	0	0	71	23	24.4681
ZFYVE1	0	genome.wustl.edu	37	14	73437631	73437631	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	73437631	73437631	G	A	SNP	ZFYVE1	ENST00000553891	human	ensembl	74_37	-1	known	nonsense	c.2293	p.R765*	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,superfamily_P-loop_NTPase,superfamily_Growth_fac_rcpt_N_dom,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE1	HGNC	ENSG00000165861				102	0	0	69	32	31.6832
PAPLN	0	genome.wustl.edu	37	14	73718770	73718770	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	73718770	73718770	C	T	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	silent	c.888	p.H296	1.000	pfam_ADAM_spacer1	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				55	0	0	22	7	24.1379
PNMA1	0	genome.wustl.edu	37	14	74179976	74179976	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	74179976	74179976	G	T	SNP	PNMA1	ENST00000316836	human	ensembl	74_37	-1	known	missense	c.367	p.L123I	1.000	NULL	superfamily_Globin-like	-	no_errors	PNMA1	HGNC	ENSG00000176903				161	0	0	116	12	9.375
COQ6	0	genome.wustl.edu	37	14	74417141	74417141	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	74417141	74417141	T	C	SNP	COQ6	ENST00000334571	human	ensembl	74_37	+1	known	missense	c.106	p.Y36H	1.000	tigrfam_UbQ_biosynth_mOase	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like,tigrfam_UbQ_biosynth_mOase,tigrfam_Ubi_Hdrxlases	-	no_errors	COQ6	HGNC	ENSG00000119723				20	0	0	10	3	23.0769
VRTN	0	genome.wustl.edu	37	14	74823989	74823989	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	74823989	74823989	G	A	SNP	VRTN	ENST00000256362	human	ensembl	74_37	+1	known	missense	c.503	p.S168N	0.875	NULL	pfam_Transposase_8	-	no_errors	VRTN	HGNC	ENSG00000133980				113	0	0	82	8	8.88889
FLVCR2	0	genome.wustl.edu	37	14	76108206	76108206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	76108206	76108206	C	T	SNP	FLVCR2	ENST00000238667	human	ensembl	74_37	+1	known	missense	c.1474	p.R492W	0.997	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Trimer_LpxA-like,pfscan_MFS_dom	-	no_errors	FLVCR2	HGNC	ENSG00000119686				106	0	0	48	31	39.2405
TGFB3	0	genome.wustl.edu	37	14	76427394	76427394	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	76427394	76427394	G	A	SNP	TGFB3	ENST00000238682	human	ensembl	74_37	-1	known	missense	c.952	p.R318C	1.000	pirsf_TGF-beta,pfam_TGF-b_C,smart_TGF-b_C	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Transform_grow_fac_b3,prints_TGF-beta	-	no_errors	TGFB3	HGNC	ENSG00000119699				100	0	0	72	7	8.86076
TGFB3	0	genome.wustl.edu	37	14	76437525	76437525	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	76437525	76437525	G	A	SNP	TGFB3	ENST00000238682	human	ensembl	74_37	-1	known	missense	c.590	p.A197V	0.018	pirsf_TGF-beta,pfam_TGF-b_N,prints_TGF-beta	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Transform_grow_fac_b3,prints_TGF-beta	-	no_errors	TGFB3	HGNC	ENSG00000119699				109	0	0	66	30	31.25
ISM2	0	genome.wustl.edu	37	14	77942189	77942189	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	77942189	77942189	C	T	SNP	ISM2	ENST00000342219	human	ensembl	74_37	-1	known	missense	c.1465	p.A489T	0.986	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM2	HGNC	ENSG00000100593				55	0	0	29	36	55.3846
TSHR	0	genome.wustl.edu	37	14	81421933	81421933	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	81421933	81421933	C	T	SNP	TSHR	ENST00000557096	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	TSHR	HGNC	ENSG00000165409				44	0	0	23	27	54
PTPN21	0	genome.wustl.edu	37	14	88946100	88946100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	88946100	88946100	G	A	SNP	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	missense	c.1675	p.R559W	0.997	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778				28	0	0	30	22	42.3077
KCNK13	0	genome.wustl.edu	37	14	90650906	90650906	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	90650906	90650906	C	T	SNP	KCNK13	ENST00000282146	human	ensembl	74_37	+1	known	silent	c.786	p.F262	0.257	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK13	HGNC	ENSG00000152315				129	0	0	56	27	32.5301
NRDE2	0	genome.wustl.edu	37	14	90755331	90755331	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	90755331	90755331	C	T	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	silent	c.2388	p.T796	0.001	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				178	0	0	89	68	43.3121
NRDE2	0	genome.wustl.edu	37	14	90759111	90759111	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	90759111	90759111	T	G	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	missense	c.1772	p.H591P	1.000	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				198	1	0.502513	129	71	35.5
CCDC88C	0	genome.wustl.edu	37	14	91806344	91806344	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	91806344	91806344	A	G	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.508	p.F170L	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				14	0	0	10	7	41.1765
BTBD7	0	genome.wustl.edu	37	14	93717918	93717918	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	93717918	93717918	C	T	SNP	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	silent	c.1833	p.T611	0.114	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114				212	0	0	142	15	9.55414
PPP4R4	0	genome.wustl.edu	37	14	94722808	94722808	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	94722808	94722808	G	T	SNP	PPP4R4	ENST00000304338	human	ensembl	74_37	+1	known	missense	c.1877	p.C626F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R4	HGNC	ENSG00000119698				44	0	0	14	4	22.2222
SERPINA11	0	genome.wustl.edu	37	14	94909415	94909415	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	94909415	94909415	C	A	SNP	SERPINA11	ENST00000334708	human	ensembl	74_37	-1	known	missense	c.1065	p.K355N	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA11	HGNC	ENSG00000186910				170	0	0	74	46	38.3333
SERPINA4	0	genome.wustl.edu	37	14	95030431	95030431	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	95030431	95030431	C	T	SNP	SERPINA4	ENST00000298841	human	ensembl	74_37	+1	known	silent	c.612	p.D204	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA4	HGNC	ENSG00000100665				175	1	0.568182	109	18	14.1732
SERPINA13P	0	genome.wustl.edu	37	14	95108162	95108162	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	95108162	95108162	G	T	SNP	SERPINA13P	ENST00000469935	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.968	-	-	-	no_errors	SERPINA13P	HGNC	ENSG00000187483				179	0	0	108	43	28.4768
DICER1	0	genome.wustl.edu	37	14	95599742	95599742	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	95599742	95599742	G	T	SNP	DICER1	ENST00000343455	human	ensembl	74_37	-1	known	silent	c.54	p.T18	1.000	NULL	pfam_RNase_III_dom,pfam_PAZ_dom,pfam_Dicer_dimerisation_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_RNase_III_dom,superfamily_P-loop_NTPase,superfamily_PAZ_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_PAZ_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_PAZ_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DICER1	HGNC	ENSG00000100697				32	0	0	12	7	36.8421
ATG2B	0	genome.wustl.edu	37	14	96781919	96781919	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	96781919	96781919	G	A	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	silent	c.3363	p.G1121	0.157	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739				44	0	0	16	8	33.3333
LINS	0	genome.wustl.edu	37	15	101112175	101112175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	101112175	101112175	G	A	SNP	LINS	ENST00000314742	human	ensembl	74_37	-1	known	missense	c.1318	p.R440W	0.000	NULL	NULL	-	no_errors	LINS	HGNC	ENSG00000140471				82	0	0	35	25	41.6667
SNRPA1	0	genome.wustl.edu	37	15	101832204	101832204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	101832204	101832204	G	A	SNP	SNRPA1	ENST00000254193	human	ensembl	74_37	-1	known	missense	c.272	p.T91I	0.971	NULL	smart_U2A'_phosphoprotein32A_C	-	no_errors	SNRPA1	HGNC	ENSG00000131876				235	0	0	91	59	39.3333
HERC2P2	0	genome.wustl.edu	37	15	23331019	23331019	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	23331019	23331019	G	A	SNP	HERC2P2	ENST00000560464	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P2	HGNC	ENSG00000140181				32	0	0	14	7	33.3333
SNRPN	0	genome.wustl.edu	37	15	25222952	25222952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	25222952	25222952	G	A	SNP	SNRPN	ENST00000444203	human	ensembl	74_37	+1	known	missense	c.460	p.V154I	0.992	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPN	HGNC	ENSG00000128739				52	0	0	22	12	35.2941
SNRPN	0	genome.wustl.edu	37	15	25223418	25223418	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	25223418	25223418	T	C	SNP	SNRPN	ENST00000444203	human	ensembl	74_37	+1	known	missense	c.650	p.I217T	0.997	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPN	HGNC	ENSG00000128739				173	0	0	72	60	45.4545
SNORD115-41	0	genome.wustl.edu	37	15	25490697	25490697	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	25490697	25490697	G	A	SNP	SNORD115-41	ENST00000363608	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	SNORD115-41	HGNC	ENSG00000200478				398	0	0	205	123	37.5
ATP10A	0	genome.wustl.edu	37	15	25924992	25924992	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	25924992	25924992	C	A	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.3996	p.K1332N	0.034	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				117	0	0	89	14	13.5922
HERC2	0	genome.wustl.edu	37	15	28361854	28361854	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	28361854	28361854	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.13566	p.P4522	0.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				114	0	0	61	40	39.604
HERC2	0	genome.wustl.edu	37	15	28412940	28412940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	28412940	28412940	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.10447	p.A3483T	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				77	0	0	33	27	45
HERC2	0	genome.wustl.edu	37	15	28422219	28422219	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	28422219	28422219	A	G	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.9309	p.D3103	0.978	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				67	0	0	38	23	37.7049
HERC2	0	genome.wustl.edu	37	15	28427565	28427565	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	28427565	28427565	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.8919	p.G2973	0.983	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				73	0	0	33	17	34
HERC2	0	genome.wustl.edu	37	15	28467261	28467261	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	28467261	28467261	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.5565	p.Q1855	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				92	0	0	54	4	6.89655
HERC2	0	genome.wustl.edu	37	15	28474910	28474910	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	28474910	28474910	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.4893	p.P1631	0.028	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				164	0	0	74	28	27.451
TJP1	0	genome.wustl.edu	37	15	30019134	30019134	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	30019134	30019134	C	A	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	missense	c.2162	p.W721L	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067				160	0	0	44	41	48.2353
TJP1	0	genome.wustl.edu	37	15	30065520	30065520	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	30065520	30065520	C	T	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	missense	c.125	p.R42Q	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067				120	0	0	37	21	36.2069
KLF13	0	genome.wustl.edu	37	15	31664455	31664455	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	31664455	31664455	C	T	SNP	KLF13	ENST00000307145	human	ensembl	74_37	+1	known	missense	c.820	p.R274C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF13	HGNC	ENSG00000169926				11	0	0	9	10	52.6316
OTUD7A	0	genome.wustl.edu	37	15	31851311	31851311	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	31851311	31851311	G	A	SNP	OTUD7A	ENST00000382902	human	ensembl	74_37	-1	known	silent	c.411	p.C137	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918				49	0	0	32	11	25.5814
FMN1	0	genome.wustl.edu	37	15	33261465	33261465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	33261465	33261465	G	A	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	missense	c.1768	p.L590F	0.997	NULL	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				403	0	0	190	130	40.625
RYR3	0	genome.wustl.edu	37	15	33795832	33795832	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	33795832	33795832	T	C	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.172	p.Y58H	1.000	pfam_Ins145_P3_rcpt	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				18	0	0	7	5	41.6667
RYR3	0	genome.wustl.edu	37	15	34149996	34149996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	34149996	34149996	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.14023	p.G4675S	1.000	pfam_Ion_trans_dom	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				76	0	0	36	25	40.9836
AVEN	0	genome.wustl.edu	37	15	34159952	34159952	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	34159952	34159952	C	T	SNP	AVEN	ENST00000306730	human	ensembl	74_37	-1	known	silent	c.717	p.G239	0.001	NULL	NULL	-	no_errors	AVEN	HGNC	ENSG00000169857				107	1	0.925926	51	38	42.6966
PGBD4	0	genome.wustl.edu	37	15	34395002	34395002	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	34395002	34395002	C	T	SNP	PGBD4	ENST00000397766	human	ensembl	74_37	+1	known	silent	c.270	p.G90	0.670	NULL	NULL	-	no_errors	PGBD4	HGNC	ENSG00000182405				70	0	0	35	5	12.5
AQR	0	genome.wustl.edu	37	15	35231009	35231009	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	35231009	35231009	T	C	SNP	AQR	ENST00000156471	human	ensembl	74_37	-1	known	missense	c.647	p.Y216C	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	AQR	HGNC	ENSG00000021776				107	0	0	40	36	47.3684
RASGRP1	0	genome.wustl.edu	37	15	38798066	38798066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	38798066	38798066	C	T	SNP	RASGRP1	ENST00000310803	human	ensembl	74_37	-1	known	missense	c.1298	p.R433Q	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP1	HGNC	ENSG00000172575				23	0	0	10	6	37.5
RASGRP1	0	genome.wustl.edu	37	15	38805064	38805064	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	38805064	38805064	A	G	SNP	RASGRP1	ENST00000310803	human	ensembl	74_37	-1	known	missense	c.769	p.W257R	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP1	HGNC	ENSG00000172575				30	0	0	34	6	15
BUB1B	0	genome.wustl.edu	37	15	40501868	40501868	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	40501868	40501868	T	C	SNP	BUB1B	ENST00000412359	human	ensembl	74_37	+1	known	missense	c.2218	p.Y740H	0.968	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970				130	0	0	53	34	39.0805
DISP2	0	genome.wustl.edu	37	15	40659836	40659836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	40659836	40659836	G	A	SNP	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	missense	c.1523	p.R508H	1.000	pfscan_SSD	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				131	0	0	55	31	36.0465
ZFYVE19	0	genome.wustl.edu	37	15	41105975	41105975	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	41105975	41105975	G	A	SNP	ZFYVE19	ENST00000355341	human	ensembl	74_37	+1	known	missense	c.1175	p.R392Q	0.000	superfamily_Znf_FYVE_PHD	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE19	HGNC	ENSG00000166140				44	0	0	27	21	43.75
EXD1	0	genome.wustl.edu	37	15	41476734	41476734	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	41476734	41476734	G	A	SNP	EXD1	ENST00000314992	human	ensembl	74_37	-1	known	missense	c.940	p.R314C	1.000	superfamily_RNaseH-like_dom	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD1	HGNC	ENSG00000178997				97	0	0	42	25	37.3134
TYRO3	0	genome.wustl.edu	37	15	41865979	41865979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	41865979	41865979	C	T	SNP	TYRO3	ENST00000263798	human	ensembl	74_37	+1	known	missense	c.2248	p.R750C	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TYRO3	HGNC	ENSG00000092445				109	0	0	78	16	17.0213
MAPKBP1	0	genome.wustl.edu	37	15	42109837	42109837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	42109837	42109837	G	A	SNP	MAPKBP1	ENST00000456763	human	ensembl	74_37	+1	known	missense	c.1826	p.R609Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802				58	0	0	65	6	8.4507
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42126974	42126974	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	42126974	42126974	A	G	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	missense	c.101	p.K34R	0.943	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				138	0	0	74	27	26.7327
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42128412	42128412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	42128412	42128412	C	T	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	missense	c.596	p.P199L	0.998	smart_JmjC_dom,pfscan_JmjC_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				79	0	0	46	10	17.8571
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42139594	42139594	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	42139594	42139594	G	A	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	silent	c.2700	p.S900	0.000	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				169	0	0	96	68	41.4634
ZNF106	0	genome.wustl.edu	37	15	42710116	42710116	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	42710116	42710116	C	A	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	missense	c.5482	p.D1828Y	1.000	smart_Znf_C2H2-like	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				62	0	0	30	12	28.5714
ZNF106	0	genome.wustl.edu	37	15	42742066	42742066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	42742066	42742066	G	A	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	missense	c.2335	p.R779W	0.969	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				224	0	0	173	19	9.89583
TTBK2	0	genome.wustl.edu	37	15	43120161	43120161	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	43120161	43120161	G	A	SNP	TTBK2	ENST00000267890	human	ensembl	74_37	-1	known	nonsense	c.502	p.R168*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881				62	0	0	42	4	8.69565
UBR1	0	genome.wustl.edu	37	15	43351982	43351982	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	43351982	43351982	T	C	SNP	UBR1	ENST00000290650	human	ensembl	74_37	-1	known	silent	c.903	p.E301	1.000	pfam_ClpS_core,superfamily_Ribosomal_L7/12_C/ClpS-like	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459				64	0	0	32	12	27.2727
TMEM62	0	genome.wustl.edu	37	15	43452973	43452973	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	43452973	43452973	G	A	SNP	TMEM62	ENST00000260403	human	ensembl	74_37	+1	known	missense	c.1277	p.R426H	1.000	NULL	superfamily_Cadherin-like	-	no_errors	TMEM62	HGNC	ENSG00000137842				97	0	0	42	19	31.1475
EPB42	0	genome.wustl.edu	37	15	43500944	43500944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	43500944	43500944	C	T	SNP	EPB42	ENST00000300215	human	ensembl	74_37	-1	known	missense	c.952	p.V318M	0.407	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	EPB42	HGNC	ENSG00000166947				116	0	0	90	15	14.2857
LCMT2	0	genome.wustl.edu	37	15	43620638	43620638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	43620638	43620638	C	T	SNP	LCMT2	ENST00000305641	human	ensembl	74_37	-1	known	missense	c.2050	p.A684T	0.000	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806				100	0	0	62	13	17.3333
MAP1A	0	genome.wustl.edu	37	15	43814218	43814218	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	43814218	43814218	A	G	SNP	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	missense	c.547	p.T183A	1.000	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963				100	0	0	37	31	45.5882
CATSPER2P1	0	genome.wustl.edu	37	15	44037264	44037264	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	44037264	44037264	C	A	SNP	CATSPER2P1	ENST00000381680	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CATSPER2P1	HGNC	ENSG00000205771				140	0	0	75	57	43.1818
B2M	0	genome.wustl.edu	37	15	45003747	45003747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	45003747	45003747	G	A	SNP	B2M	ENST00000544417	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	0.701	NULL	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	B2M	HGNC	ENSG00000166710				67	0	0	51	21	29.1667
DUOX1	0	genome.wustl.edu	37	15	45444205	45444205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	45444205	45444205	G	A	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	missense	c.3148	p.V1050M	0.811	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				64	0	0	33	4	10.8108
FBN1	0	genome.wustl.edu	37	15	48703365	48703365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	48703365	48703365	C	T	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.8438	p.S2813N	1.000	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				136	0	0	54	21	28
FBN1	0	genome.wustl.edu	37	15	48829944	48829944	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	48829944	48829944	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	silent	c.600	p.S200	0.976	pfam_TB_dom,superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				117	1	0.847458	75	35	31.8182
ATP8B4	0	genome.wustl.edu	37	15	50336843	50336843	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	50336843	50336843	G	T	SNP	ATP8B4	ENST00000284509	human	ensembl	74_37	-1	known	missense	c.248	p.P83H	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B4	HGNC	ENSG00000104043				69	0	0	22	14	38.8889
HDC	0	genome.wustl.edu	37	15	50544656	50544656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	50544656	50544656	C	T	SNP	HDC	ENST00000267845	human	ensembl	74_37	-1	known	missense	c.1012	p.A338T	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	HDC	HGNC	ENSG00000140287				126	0	0	70	39	35.7798
GABPB1	0	genome.wustl.edu	37	15	50595164	50595164	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	50595164	50595164	T	C	SNP	GABPB1	ENST00000220429	human	ensembl	74_37	-1	known	missense	c.433	p.I145V	0.999	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	GABPB1	HGNC	ENSG00000104064				59	0	0	28	8	22.2222
GLDN	0	genome.wustl.edu	37	15	51696681	51696681	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	51696681	51696681	C	T	SNP	GLDN	ENST00000335449	human	ensembl	74_37	+1	known	silent	c.1386	p.H462	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Collagen,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	GLDN	HGNC	ENSG00000186417				131	0	0	53	30	36.1446
DMXL2	0	genome.wustl.edu	37	15	51868358	51868358	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	51868358	51868358	A	G	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	silent	c.108	p.D36	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				106	0	0	30	22	42.3077
TCF12	0	genome.wustl.edu	37	15	57565312	57565312	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	57565312	57565312	A	G	SNP	TCF12	ENST00000438423	human	ensembl	74_37	+1	known	silent	c.1830	p.E610	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF12	HGNC	ENSG00000140262				71	0	0	34	17	33.3333
GCOM1	0	genome.wustl.edu	37	15	57924693	57924693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	57924693	57924693	G	A	SNP	GCOM1	ENST00000380569	human	ensembl	74_37	+1	known	missense	c.740	p.S247N	1.000	NULL	NULL	-	no_errors	GCOM1	HGNC	ENSG00000137878				133	0	0	104	7	6.30631
LIPC	0	genome.wustl.edu	37	15	58853170	58853170	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	58853170	58853170	C	T	SNP	LIPC	ENST00000299022	human	ensembl	74_37	+1	known	missense	c.1159	p.P387S	0.558	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase_hep	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase_hep,prints_Lipase,prints_Lipo_Lipase	-	no_errors	LIPC	HGNC	ENSG00000166035				76	0	0	45	24	34.7826
LIPC	0	genome.wustl.edu	37	15	58855922	58855922	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	58855922	58855922	G	T	SNP	LIPC	ENST00000299022	human	ensembl	74_37	+1	known	missense	c.1388	p.R463I	1.000	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase_hep,prints_Lipase,prints_Lipo_Lipase	-	no_errors	LIPC	HGNC	ENSG00000166035				36	0	0	22	6	21.4286
MYO1E	0	genome.wustl.edu	37	15	59430514	59430514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	59430514	59430514	G	A	SNP	MYO1E	ENST00000288235	human	ensembl	74_37	-1	known	missense	c.3133	p.P1045S	1.000	superfamily_SH3_domain	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1E	HGNC	ENSG00000157483				158	0	0	105	11	9.48276
RORA	0	genome.wustl.edu	37	15	60806876	60806876	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	60806876	60806876	A	G	SNP	RORA	ENST00000261523	human	ensembl	74_37	-1	known	silent	c.462	p.S154	0.986	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORA	HGNC	ENSG00000069667				162	0	0	57	43	43
VPS13C	0	genome.wustl.edu	37	15	62173044	62173044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	62173044	62173044	G	A	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.9886	p.R3296W	0.991	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				59	0	0	27	20	42.5532
TLN2	0	genome.wustl.edu	37	15	62989915	62989915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	62989915	62989915	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.1321	p.R441W	1.000	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				145	0	0	107	59	35.5422
LACTB	0	genome.wustl.edu	37	15	63421745	63421745	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	63421745	63421745	T	C	SNP	LACTB	ENST00000261893	human	ensembl	74_37	+1	known	silent	c.1014	p.A338	1.000	pfam_Beta-lactam-related,superfamily_Beta-lactam/transpept-like	pfam_Beta-lactam-related,superfamily_Beta-lactam/transpept-like	-	no_errors	LACTB	HGNC	ENSG00000103642				88	0	0	22	29	56.8627
HERC1	0	genome.wustl.edu	37	15	63933787	63933787	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	63933787	63933787	G	A	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.11489	p.A3830V	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				14	0	0	7	4	36.3636
SNX22	0	genome.wustl.edu	37	15	64444886	64444886	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	64444886	64444886	A	G	SNP	SNX22	ENST00000325881	human	ensembl	74_37	+1	known	missense	c.209	p.N70S	0.985	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX22	HGNC	ENSG00000157734				68	0	0	35	19	35.1852
PIF1	0	genome.wustl.edu	37	15	65108793	65108793	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	65108793	65108793	G	A	SNP	PIF1	ENST00000333425	human	ensembl	74_37	-1	known	missense	c.1846	p.R616W	0.866	superfamily_P-loop_NTPase	pfam_DNA_helicase_Pif1,pfam_DNA_helicase,superfamily_P-loop_NTPase	-	no_errors	PIF1	HGNC	ENSG00000140451				113	0	0	69	42	37.8378
VWA9	0	genome.wustl.edu	37	15	65891328	65891328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	65891328	65891328	G	A	SNP	VWA9	ENST00000567744	human	ensembl	74_37	-1	known	missense	c.595	p.L199F	1.000	NULL	NULL	-	no_errors	VWA9	HGNC	ENSG00000138614				106	0	0	45	19	29.6875
LCTL	0	genome.wustl.edu	37	15	66844070	66844070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	66844070	66844070	C	T	SNP	LCTL	ENST00000341509	human	ensembl	74_37	-1	known	missense	c.1454	p.R485H	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCTL	HGNC	ENSG00000188501				170	0	0	59	38	39.1753
SKOR1	0	genome.wustl.edu	37	15	68119417	68119417	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	68119417	68119417	C	T	SNP	SKOR1	ENST00000380035	human	ensembl	74_37	+1	known	silent	c.1251	p.G417	0.297	NULL	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR1	HGNC	ENSG00000188779				55	0	0	60	5	7.69231
PIAS1	0	genome.wustl.edu	37	15	68438952	68438952	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	68438952	68438952	C	T	SNP	PIAS1	ENST00000249636	human	ensembl	74_37	+1	known	nonsense	c.742	p.R248*	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS1	HGNC	ENSG00000033800				124	0	0	60	31	34.0659
PIAS1	0	genome.wustl.edu	37	15	68445989	68445989	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	68445989	68445989	T	C	SNP	PIAS1	ENST00000249636	human	ensembl	74_37	+1	known	missense	c.890	p.L297S	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS1	HGNC	ENSG00000033800				44	0	0	31	14	31.1111
GLCE	0	genome.wustl.edu	37	15	69560894	69560894	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	69560894	69560894	G	T	SNP	GLCE	ENST00000261858	human	ensembl	74_37	+1	known	nonsense	c.1165	p.G389*	1.000	NULL	pfam_C5-epim	-	no_errors	GLCE	HGNC	ENSG00000138604				75	0	0	39	17	30.3571
UACA	0	genome.wustl.edu	37	15	70963407	70963407	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	70963407	70963407	G	A	SNP	UACA	ENST00000322954	human	ensembl	74_37	-1	known	nonsense	c.1192	p.Q398*	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831				46	0	0	14	9	39.1304
NR2E3	0	genome.wustl.edu	37	15	72103855	72103855	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	72103855	72103855	G	A	SNP	NR2E3	ENST00000326995	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NR2E3	HGNC	ENSG00000031544				9	0	0	9	7	43.75
C15orf59	0	genome.wustl.edu	37	15	74032580	74032580	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	74032580	74032580	C	T	SNP	C15orf59	ENST00000379822	human	ensembl	74_37	-1	known	missense	c.560	p.R187Q	1.000	NULL	superfamily_Polyketide_synth_docking	-	no_errors	C15orf59	HGNC	ENSG00000205363				98	0	0	44	35	44.3038
LOXL1	0	genome.wustl.edu	37	15	74240214	74240214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	74240214	74240214	G	A	SNP	LOXL1	ENST00000261921	human	ensembl	74_37	+1	known	missense	c.1573	p.D525N	0.995	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	-	no_errors	LOXL1	HGNC	ENSG00000129038				124	0	0	90	37	29.1339
ISLR2	0	genome.wustl.edu	37	15	74426494	74426494	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	74426494	74426494	T	C	SNP	ISLR2	ENST00000361742	human	ensembl	74_37	+1	known	missense	c.1399	p.Y467H	0.998	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Ig-like_dom	-	no_errors	ISLR2	HGNC	ENSG00000167178				25	0	0	15	9	37.5
ARID3B	0	genome.wustl.edu	37	15	74883692	74883692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	74883692	74883692	G	A	SNP	ARID3B	ENST00000346246	human	ensembl	74_37	+1	known	missense	c.1082	p.R361H	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3B	HGNC	ENSG00000179361				169	0	0	116	12	9.375
MAN2C1	0	genome.wustl.edu	37	15	75656966	75656966	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	75656966	75656966	C	A	SNP	MAN2C1	ENST00000267978	human	ensembl	74_37	-1	known	missense	c.463	p.G155W	1.000	NULL	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400				39	0	0	17	14	45.1613
SIN3A	0	genome.wustl.edu	37	15	75702607	75702607	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	75702607	75702607	C	A	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	missense	c.1029	p.K343N	1.000	pfam_PAH,superfamily_PAH	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375				87	0	0	59	10	14.4928
SCAPER	0	genome.wustl.edu	37	15	76643603	76643603	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	76643603	76643603	C	T	SNP	SCAPER	ENST00000324767	human	ensembl	74_37	-1	known	silent	c.4074	p.A1358	0.004	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386				17	0	0	14	4	22.2222
CTSH	0	genome.wustl.edu	37	15	79231492	79231492	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	79231492	79231492	C	A	SNP	CTSH	ENST00000220166	human	ensembl	74_37	-1	known	missense	c.113	p.W38L	1.000	pfam_Prot_inhib_I29,smart_Prot_inhib_I29	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSH	HGNC	ENSG00000103811				46	0	0	34	7	17.0732
MESDC1	0	genome.wustl.edu	37	15	81295494	81295494	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	81295494	81295494	C	T	SNP	MESDC1	ENST00000267984	human	ensembl	74_37	+1	known	silent	c.882	p.S294	1.000	NULL	NULL	-	no_errors	MESDC1	HGNC	ENSG00000140406				12	0	0	4	10	71.4286
IL16	0	genome.wustl.edu	37	15	81593720	81593720	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	81593720	81593720	C	T	SNP	IL16	ENST00000302987	human	ensembl	74_37	+1	known	missense	c.3185	p.T1062M	0.002	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_IL-16	-	no_errors	IL16	HGNC	ENSG00000172349				73	0	0	29	18	38.2979
EFTUD1	0	genome.wustl.edu	37	15	82512123	82512123	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	82512123	82512123	G	T	SNP	EFTUD1	ENST00000268206	human	ensembl	74_37	-1	known	missense	c.1481	p.P494H	0.041	superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_EFG_III-V,superfamily_Transl_B-barrel,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598				74	0	0	33	10	23.2558
LOC283693	0	genome.wustl.edu	37	15	83395628	83395628	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	83395628	83395628	G	A	SNP	LOC283693	ENST00000560958	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-752G15.9	Clone_based_vega_gene	ENSG00000259315				8	0	0	4	3	42.8571
WHAMM	0	genome.wustl.edu	37	15	83502091	83502091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	83502091	83502091	G	A	SNP	WHAMM	ENST00000286760	human	ensembl	74_37	+1	known	missense	c.2233	p.A745T	0.998	pfscan_WH2_dom	superfamily_tRNA-bd_arm,pfscan_WH2_dom	-	no_errors	WHAMM	HGNC	ENSG00000156232				40	0	0	21	12	36.3636
BTBD1	0	genome.wustl.edu	37	15	83710649	83710649	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	83710649	83710649	G	C	SNP	BTBD1	ENST00000261721	human	ensembl	74_37	-1	known	missense	c.693	p.D231E	1.000	pfam_BACK,smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726				70	0	0	19	23	54.7619
ALPK3	0	genome.wustl.edu	37	15	85383636	85383636	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	85383636	85383636	C	T	SNP	ALPK3	ENST00000258888	human	ensembl	74_37	+1	known	missense	c.1732	p.R578W	0.007	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK3	HGNC	ENSG00000136383				36	0	0	35	15	30
AGBL1	0	genome.wustl.edu	37	15	87217585	87217585	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	87217585	87217585	G	A	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	missense	c.3001	p.A1001T	0.000	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748				28	0	0	13	13	50
AEN	0	genome.wustl.edu	37	15	89172551	89172551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	89172551	89172551	G	A	SNP	AEN	ENST00000379231	human	ensembl	74_37	+1	known	missense	c.635	p.R212Q	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	AEN	HGNC	ENSG00000181026				148	0	0	96	49	33.7931
POLG	0	genome.wustl.edu	37	15	89864087	89864087	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	89864087	89864087	C	T	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	missense	c.2891	p.R964H	1.000	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				47	0	0	32	22	40.7407
POLG	0	genome.wustl.edu	37	15	89876391	89876391	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	89876391	89876391	C	T	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	missense	c.595	p.V199M	1.000	pirsf_DNA-dir_DNA_pol_A_mt_sub,superfamily_RNaseH-like_dom	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				45	0	0	29	8	21.6216
POLG	0	genome.wustl.edu	37	15	89876408	89876408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	89876408	89876408	C	T	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	missense	c.578	p.R193Q	0.997	pirsf_DNA-dir_DNA_pol_A_mt_sub,superfamily_RNaseH-like_dom	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				39	0	0	20	13	39.3939
ZNF710	0	genome.wustl.edu	37	15	90616474	90616474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	90616474	90616474	G	A	SNP	ZNF710	ENST00000268154	human	ensembl	74_37	+1	known	missense	c.1630	p.V544M	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548				120	0	0	69	53	43.4426
UNC45A	0	genome.wustl.edu	37	15	91488239	91488239	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	91488239	91488239	T	C	SNP	UNC45A	ENST00000418476	human	ensembl	74_37	+1	known	missense	c.1145	p.L382P	1.000	pfam_UNC-45/Ring3	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45A	HGNC	ENSG00000140553				90	0	0	40	28	41.1765
MCTP2	0	genome.wustl.edu	37	15	94942207	94942207	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	94942207	94942207	G	A	SNP	MCTP2	ENST00000357742	human	ensembl	74_37	+1	known	silent	c.1806	p.P602	0.635	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_PRibTrfase_C,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	MCTP2	HGNC	ENSG00000140563				53	0	0	27	11	28.9474
SPATA8	0	genome.wustl.edu	37	15	97328284	97328284	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	97328284	97328284	T	C	SNP	SPATA8	ENST00000558553	human	ensembl	74_37	+1	putative	missense	c.133	p.F45L	0.000	NULL	NULL	-	no_errors	SPATA8	HGNC	ENSG00000185594				158	0	0	66	39	37.1429
IGF1R	0	genome.wustl.edu	37	15	99442758	99442758	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	99442758	99442758	G	A	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	silent	c.1155	p.T385	0.248	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443				124	0	0	58	32	35.5556
TTC23	0	genome.wustl.edu	37	15	99696478	99696478	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	99696478	99696478	A	G	SNP	TTC23	ENST00000262074	human	ensembl	74_37	-1	known	missense	c.1018	p.S340P	1.000	NULL	smart_TPR_repeat	-	no_errors	TTC23	HGNC	ENSG00000103852				77	0	0	23	21	47.7273
TEKT5	0	genome.wustl.edu	37	16	10729710	10729710	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	10729710	10729710	C	T	SNP	TEKT5	ENST00000283025	human	ensembl	74_37	-1	known	silent	c.1152	p.K384	1.000	pfam_Tektin,prints_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT5	HGNC	ENSG00000153060				267	0	0	178	112	38.6207
RHBDF1	0	genome.wustl.edu	37	16	112645	112645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	112645	112645	C	T	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	missense	c.844	p.E282K	1.000	pfam_Rhomboid_SP	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384				287	0	0	172	106	38.1295
ZC3H7A	0	genome.wustl.edu	37	16	11859392	11859392	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	11859392	11859392	A	G	SNP	ZC3H7A	ENST00000355758	human	ensembl	74_37	-1	known	missense	c.1672	p.F558L	0.980	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299				126	0	0	78	37	32.1739
CACNA1H	0	genome.wustl.edu	37	16	1250483	1250483	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	1250483	1250483	A	G	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.1031	p.Y344C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				79	0	0	49	23	31.9444
CACNA1H	0	genome.wustl.edu	37	16	1270119	1270119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	1270119	1270119	C	T	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.6187	p.R2063W	0.020	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				16	0	0	9	9	50
CACNA1H	0	genome.wustl.edu	37	16	1270845	1270845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	1270845	1270845	C	T	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.6913	p.P2305S	0.008	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				162	0	0	81	57	41.3043
BAIAP3	0	genome.wustl.edu	37	16	1391476	1391476	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	1391476	1391476	G	T	SNP	BAIAP3	ENST00000324385	human	ensembl	74_37	+1	known	missense	c.822	p.K274N	0.957	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	BAIAP3	HGNC	ENSG00000007516				116	0	0	76	46	37.7049
MYH11	0	genome.wustl.edu	37	16	15797970	15797970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	15797970	15797970	C	T	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	missense	c.5818	p.E1940K	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				145	0	0	55	50	47.619
MYH11	0	genome.wustl.edu	37	16	15818179	15818179	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	15818179	15818179	C	T	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	missense	c.4225	p.E1409K	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				69	0	0	28	28	50
IFT140	0	genome.wustl.edu	37	16	1657270	1657270	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	1657270	1657270	C	T	SNP	IFT140	ENST00000439987	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	IFT140	HGNC	ENSG00000187535				138	0	0	83	14	14.433
COQ7	0	genome.wustl.edu	37	16	19087090	19087090	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	19087090	19087090	G	A	SNP	COQ7	ENST00000321998	human	ensembl	74_37	+1	known	missense	c.415	p.V139M	1.000	pfam_Ubq_synth_Coq7,superfamily_Ferritin-like_SF	pfam_Ubq_synth_Coq7,superfamily_Ferritin-like_SF	-	no_errors	COQ7	HGNC	ENSG00000167186				93	0	0	68	44	39.2857
NOXO1	0	genome.wustl.edu	37	16	2030127	2030127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	2030127	2030127	G	A	SNP	NOXO1	ENST00000397280	human	ensembl	74_37	-1	known	missense	c.472	p.L158F	0.476	superfamily_SH3_domain	pfam_SH3_domain,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NOXO1	HGNC	ENSG00000196408				9	0	0	11	9	45
ACSM2B	0	genome.wustl.edu	37	16	20548678	20548678	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	20548678	20548678	A	G	SNP	ACSM2B	ENST00000329697	human	ensembl	74_37	-1	known	missense	c.1636	p.F546L	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2B	HGNC	ENSG00000066813				230	0	0	107	64	37.4269
DNAH3	0	genome.wustl.edu	37	16	21145631	21145631	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	21145631	21145631	A	G	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.1031	p.L344P	0.997	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				155	0	0	79	54	40.6015
ZP2	0	genome.wustl.edu	37	16	21220960	21220960	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	21220960	21220960	T	C	SNP	ZP2	ENST00000219593	human	ensembl	74_37	-1	known	missense	c.322	p.R108G	0.240	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP2	HGNC	ENSG00000103310				73	0	0	44	15	25.4237
TSC2	0	genome.wustl.edu	37	16	2127476	2127476	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	2127476	2127476	C	T	SNP	TSC2	ENST00000568366	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.542	-	-	-	no_errors	TSC2	HGNC	ENSG00000103197				141	0	0	79	52	39.6947
TSC2	0	genome.wustl.edu	37	16	2138052	2138052	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	2138052	2138052	T	C	SNP	TSC2	ENST00000219476	human	ensembl	74_37	+1	known	missense	c.5072	p.M1691T	1.000	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom,prints_Tuberin	-	no_errors	TSC2	HGNC	ENSG00000103197				164	0	0	92	36	28.125
PKD1	0	genome.wustl.edu	37	16	2140589	2140589	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	2140589	2140589	G	A	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	silent	c.12141	p.L4047	0.762	pfam_PKD1_2_channel,prints_PKD_1	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				27	0	0	19	6	24
OTOA	0	genome.wustl.edu	37	16	21690264	21690264	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	21690264	21690264	G	A	SNP	OTOA	ENST00000286149	human	ensembl	74_37	+1	known	silent	c.120	p.A40	0.990	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719				166	0	0	58	24	29.2683
TRAF7	0	genome.wustl.edu	37	16	2222338	2222338	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	2222338	2222338	C	T	SNP	TRAF7	ENST00000326181	human	ensembl	74_37	+1	known	nonsense	c.622	p.R208*	0.766	superfamily_TRAF-like	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653				33	0	0	20	8	28.5714
CASKIN1	0	genome.wustl.edu	37	16	2230431	2230431	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	2230431	2230431	G	A	SNP	CASKIN1	ENST00000343516	human	ensembl	74_37	-1	known	missense	c.2938	p.R980W	1.000	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971				13	0	0	8	7	46.6667
HBA2	0	genome.wustl.edu	37	16	223271	223271	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	223271	223271	G	A	SNP	HBA2	ENST00000251595	human	ensembl	74_37	+1	known	silent	c.243	p.L81	0.999	pfam_Globin,superfamily_Globin-like,prints_Haemoglobin_a,prints_Haemoglobin_pi,pfscan_Globin	pfam_Globin,superfamily_Globin-like,prints_Haemoglobin_a,prints_Haemoglobin_pi,pfscan_Globin	-	no_errors	HBA2	HGNC	ENSG00000188536				9	0	0	6	5	45.4545
E4F1	0	genome.wustl.edu	37	16	2273712	2273712	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	2273712	2273712	T	C	SNP	E4F1	ENST00000301727	human	ensembl	74_37	+1	known	missense	c.98	p.V33A	0.925	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967				12	0	0	12	16	57.1429
HS3ST2	0	genome.wustl.edu	37	16	22926718	22926718	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	22926718	22926718	C	T	SNP	HS3ST2	ENST00000261374	human	ensembl	74_37	+1	known	silent	c.939	p.C313	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST2	HGNC	ENSG00000122254				265	0	0	162	40	19.802
GGA2	0	genome.wustl.edu	37	16	23478825	23478825	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	23478825	23478825	G	A	SNP	GGA2	ENST00000567339	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.016	-	-	-	no_errors	GGA2	HGNC	ENSG00000103365				10	0	0	1	4	80
ABCA3	0	genome.wustl.edu	37	16	2376256	2376256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	2376256	2376256	G	A	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	missense	c.74	p.T25M	0.995	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				88	0	0	62	26	29.5455
CACNG3	0	genome.wustl.edu	37	16	24372935	24372935	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	24372935	24372935	G	A	SNP	CACNG3	ENST00000005284	human	ensembl	74_37	+1	known	silent	c.699	p.R233	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	-	no_errors	CACNG3	HGNC	ENSG00000006116				105	0	0	54	31	36.4706
AQP8	0	genome.wustl.edu	37	16	25228661	25228661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	25228661	25228661	G	A	SNP	AQP8	ENST00000219660	human	ensembl	74_37	+1	known	missense	c.155	p.G52E	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_8,prints_MIP	-	no_errors	AQP8	HGNC	ENSG00000103375				260	0	0	192	46	19.3277
KDM8	0	genome.wustl.edu	37	16	27221729	27221729	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	27221729	27221729	C	T	SNP	KDM8	ENST00000441782	human	ensembl	74_37	+1	known	silent	c.399	p.Y133	0.006	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM8	HGNC	ENSG00000155666				84	0	0	46	36	43.9024
GTF3C1	0	genome.wustl.edu	37	16	27519890	27519890	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	27519890	27519890	G	A	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	nonsense	c.1213	p.R405*	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				76	0	0	16	12	42.8571
SBK1	0	genome.wustl.edu	37	16	28331528	28331528	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	28331528	28331528	C	T	SNP	SBK1	ENST00000341901	human	ensembl	74_37	+1	known	silent	c.561	p.C187	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_Sbk1,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_Sbk1,pfscan_Prot_kinase_dom	-	no_errors	SBK1	HGNC	ENSG00000188322				32	0	0	18	12	40
SBK1	0	genome.wustl.edu	37	16	28331667	28331667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	28331667	28331667	G	A	SNP	SBK1	ENST00000341901	human	ensembl	74_37	+1	known	missense	c.700	p.V234M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_Sbk1,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_Sbk1,pfscan_Prot_kinase_dom	-	no_errors	SBK1	HGNC	ENSG00000188322				45	0	0	22	27	55.102
APOBR	0	genome.wustl.edu	37	16	28508861	28508861	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	28508861	28508861	G	A	SNP	APOBR	ENST00000564831	human	ensembl	74_37	+1	known	silent	c.2499	p.E833	0.041	NULL	NULL	-	no_errors	APOBR	HGNC	ENSG00000184730				25	0	0	24	8	25
SULT1A1	0	genome.wustl.edu	37	16	28618377	28618377	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	28618377	28618377	C	T	SNP	SULT1A1	ENST00000314752	human	ensembl	74_37	-1	known	missense	c.394	p.A132T	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A1	HGNC	ENSG00000196502				213	0	0	177	46	20.6278
SULT1A1	0	genome.wustl.edu	37	16	28619676	28619676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	28619676	28619676	C	T	SNP	SULT1A1	ENST00000314752	human	ensembl	74_37	-1	known	missense	c.308	p.R103Q	0.960	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A1	HGNC	ENSG00000196502				254	0	0	166	19	10.2703
SH2B1	0	genome.wustl.edu	37	16	28883214	28883214	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	28883214	28883214	C	G	SNP	SH2B1	ENST00000322610	human	ensembl	74_37	+1	known	missense	c.1423	p.R475G	0.997	NULL	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188				120	0	0	88	6	6.38298
ATP2A1	0	genome.wustl.edu	37	16	28912049	28912049	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	28912049	28912049	C	T	SNP	ATP2A1	ENST00000357084	human	ensembl	74_37	+1	known	nonsense	c.1912	p.R638*	0.977	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_IIA	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A1	HGNC	ENSG00000196296				91	0	0	54	47	46.5347
LAT	0	genome.wustl.edu	37	16	28997880	28997880	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	28997880	28997880	C	T	SNP	LAT	ENST00000395461	human	ensembl	74_37	+1	known	silent	c.438	p.Y146	0.873	NULL	prints_Linker_for_activat_Tcells_prot	-	no_errors	LAT	HGNC	ENSG00000213658				69	0	0	49	29	37.1795
NPIPB11	0	genome.wustl.edu	37	16	29401370	29401370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	29401370	29401370	C	T	SNP	NPIPB11	ENST00000524087	human	ensembl	74_37	-1	putative	missense	c.437	p.R146Q	0.001	NULL	NULL	-	no_errors	NPIPB11	HGNC	ENSG00000254206				90	0	0	26	20	43.4783
FLYWCH1	0	genome.wustl.edu	37	16	2987385	2987385	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	2987385	2987385	G	T	SNP	FLYWCH1	ENST00000399667	human	ensembl	74_37	+1	known	missense	c.1924	p.D642Y	0.996	NULL	pfam_Znf_FLYWCH	-	no_errors	FLYWCH1	HGNC	ENSG00000059122				21	0	0	14	4	22.2222
TAOK2	0	genome.wustl.edu	37	16	29997696	29997696	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	29997696	29997696	G	A	SNP	TAOK2	ENST00000308893	human	ensembl	74_37	+1	known	silent	c.2103	p.T701	0.968	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				85	0	0	73	20	21.5054
CORO1A	0	genome.wustl.edu	37	16	30198388	30198388	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	30198388	30198388	C	T	SNP	CORO1A	ENST00000219150	human	ensembl	74_37	+1	known	silent	c.480	p.D160	0.931	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1A	HGNC	ENSG00000102879				71	0	0	55	4	6.77966
SEPT1	0	genome.wustl.edu	37	16	30392723	30392723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	30392723	30392723	C	T	SNP	SEPT1	ENST00000321367	human	ensembl	74_37	-1	known	missense	c.518	p.R173Q	1.000	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT1	HGNC	ENSG00000180096				116	0	0	56	41	42.268
ZNF768	0	genome.wustl.edu	37	16	30536054	30536054	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	30536054	30536054	G	T	SNP	ZNF768	ENST00000380412	human	ensembl	74_37	-1	known	silent	c.1407	p.S469	0.916	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_RNA_pol_II_repeat_euk,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF768	HGNC	ENSG00000169957				26	0	0	20	12	37.5
ZNF764	0	genome.wustl.edu	37	16	30569372	30569372	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	30569372	30569372	C	T	SNP	ZNF764	ENST00000252797	human	ensembl	74_37	-1	known	silent	c.132	p.R44	0.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF764	HGNC	ENSG00000169951				20	0	0	32	10	23.8095
HCFC1R1	0	genome.wustl.edu	37	16	3073914	3073914	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3073914	3073914	C	G	SNP	HCFC1R1	ENST00000248089	human	ensembl	74_37	-1	known	missense	c.29	p.G10A	0.194	NULL	NULL	-	no_errors	HCFC1R1	HGNC	ENSG00000103145				9	0	0	5	3	37.5
SRCAP	0	genome.wustl.edu	37	16	30747684	30747684	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	30747684	30747684	C	A	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.6893	p.A2298D	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				61	0	0	42	16	27.5862
STX1B	0	genome.wustl.edu	37	16	31012433	31012433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	31012433	31012433	C	T	SNP	STX1B	ENST00000215095	human	ensembl	74_37	-1	known	missense	c.187	p.A63T	0.998	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX1B	HGNC	ENSG00000099365				82	0	0	39	18	31.5789
BCKDK	0	genome.wustl.edu	37	16	31122516	31122516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	31122516	31122516	C	T	SNP	BCKDK	ENST00000219794	human	ensembl	74_37	+1	known	missense	c.821	p.P274L	1.000	pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core,prints_Sig_transdc_His_kin-like_C	-	no_errors	BCKDK	HGNC	ENSG00000103507				76	0	0	33	20	37.7358
FUS	0	genome.wustl.edu	37	16	31196402	31196402	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	31196402	31196402	T	C	SNP	FUS	ENST00000254108	human	ensembl	74_37	+1	known	silent	c.666	p.G222	0.017	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	FUS	HGNC	ENSG00000089280				16	0	0	13	13	50
SLC5A2	0	genome.wustl.edu	37	16	31499965	31499965	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	31499965	31499965	G	A	SNP	SLC5A2	ENST00000330498	human	ensembl	74_37	+1	known	silent	c.1152	p.A384	0.064	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A2	HGNC	ENSG00000140675				30	0	0	32	6	15.7895
ZNF205	0	genome.wustl.edu	37	16	3168973	3168973	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3168973	3168973	C	T	SNP	ZNF205	ENST00000219091	human	ensembl	74_37	+1	known	silent	c.552	p.S184	0.002	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF205	HGNC	ENSG00000122386				122	1	0.813008	113	6	5.04202
MEFV	0	genome.wustl.edu	37	16	3304265	3304265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3304265	3304265	G	A	SNP	MEFV	ENST00000219596	human	ensembl	74_37	-1	known	missense	c.803	p.A268V	0.000	NULL	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_DEATH-like_dom,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313				197	0	0	165	16	8.83978
ZNF263	0	genome.wustl.edu	37	16	3340259	3340259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3340259	3340259	C	T	SNP	ZNF263	ENST00000219069	human	ensembl	74_37	+1	known	missense	c.1753	p.R585W	0.996	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF263	HGNC	ENSG00000006194				80	0	0	40	25	38.4615
SLX4	0	genome.wustl.edu	37	16	3644517	3644517	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3644517	3644517	G	A	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	silent	c.2097	p.S699	0.024	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				39	0	0	34	15	30.6122
SLX4	0	genome.wustl.edu	37	16	3647811	3647811	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3647811	3647811	T	C	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	missense	c.1353	p.I451M	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				76	0	0	57	32	35.9551
DNASE1	0	genome.wustl.edu	37	16	3713583	3713583	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3713583	3713583	G	A	SNP	DNASE1	ENST00000575152	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNASE1	HGNC	ENSG00000213918				80	0	0	61	9	12.8571
CREBBP	0	genome.wustl.edu	37	16	3778834	3778834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3778834	3778834	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.6214	p.R2072W	1.000	pfam_Nuc_rcpt_coact_CREBbp,superfamily_Nuc_rcpt_coact	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				86	0	0	53	45	45.9184
CREBBP	0	genome.wustl.edu	37	16	3781863	3781863	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3781863	3781863	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.4804	p.R1602C	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				127	0	0	62	47	43.1193
ADCY9	0	genome.wustl.edu	37	16	4029167	4029167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	4029167	4029167	C	T	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	missense	c.2629	p.A877T	0.995	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				114	0	0	75	35	31.8182
ADCY9	0	genome.wustl.edu	37	16	4165092	4165092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	4165092	4165092	A	G	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	missense	c.352	p.Y118H	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				88	0	0	61	35	36.4583
NMRAL1	0	genome.wustl.edu	37	16	4516334	4516334	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	4516334	4516334	T	C	SNP	NMRAL1	ENST00000283429	human	ensembl	74_37	-1	known	missense	c.349	p.I117V	1.000	pfam_NmrA	pfam_NmrA,pfam_DH_sc/Rdtase_SDR,pfam_RCK_N	-	no_errors	NMRAL1	HGNC	ENSG00000153406				41	0	0	27	25	48.0769
SHCBP1	0	genome.wustl.edu	37	16	46629544	46629544	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	46629544	46629544	G	A	SNP	SHCBP1	ENST00000303383	human	ensembl	74_37	-1	known	silent	c.1384	p.L462	0.581	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	-	no_errors	SHCBP1	HGNC	ENSG00000171241				57	0	0	29	22	43.1373
ABCC12	0	genome.wustl.edu	37	16	48149419	48149419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	48149419	48149419	G	A	SNP	ABCC12	ENST00000416054	human	ensembl	74_37	-1	known	missense	c.1823	p.P608L	0.019	NULL	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,pfscan_ABC1_TM_dom	-	no_errors	ABCC12	HGNC	ENSG00000140798				125	0	0	85	48	36.0902
ABCC11	0	genome.wustl.edu	37	16	48244967	48244967	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	48244967	48244967	G	A	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	silent	c.1500	p.N500	0.000	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				98	0	0	85	5	5.55556
ABCC11	0	genome.wustl.edu	37	16	48258336	48258336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	48258336	48258336	G	A	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.400	p.H134Y	0.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				84	0	0	23	22	48.8889
LONP2	0	genome.wustl.edu	37	16	48303976	48303976	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	48303976	48303976	C	T	SNP	LONP2	ENST00000285737	human	ensembl	74_37	+1	known	silent	c.1032	p.Y344	1.000	superfamily_P-loop_NTPase,tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP2	HGNC	ENSG00000102910				68	0	0	39	8	17.0213
LONP2	0	genome.wustl.edu	37	16	48337150	48337150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	48337150	48337150	G	A	SNP	LONP2	ENST00000285737	human	ensembl	74_37	+1	known	missense	c.1729	p.V577M	1.000	tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP2	HGNC	ENSG00000102910				130	0	0	88	50	36.2319
BRD7	0	genome.wustl.edu	37	16	50362621	50362621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	50362621	50362621	G	A	SNP	BRD7	ENST00000394689	human	ensembl	74_37	-1	known	missense	c.1046	p.T349M	1.000	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164				93	0	0	42	37	46.8354
NAGPA	0	genome.wustl.edu	37	16	5075682	5075682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	5075682	5075682	C	T	SNP	NAGPA	ENST00000312251	human	ensembl	74_37	-1	known	missense	c.1345	p.A449T	0.920	NULL	pfam_DUF2233,pfscan_EG-like_dom	-	no_errors	NAGPA	HGNC	ENSG00000103174				27	0	0	18	9	33.3333
CYLD	0	genome.wustl.edu	37	16	50826532	50826532	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	50826532	50826532	A	C	SNP	CYLD	ENST00000311559	human	ensembl	74_37	+1	known	missense	c.2266	p.M756L	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_CAP-Gly_domain,pfam_Peptidase_C19/C67,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19/C67	-	no_errors	CYLD	HGNC	ENSG00000083799				32	0	0	9	4	30.7692
CYLD	0	genome.wustl.edu	37	16	50828188	50828188	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	50828188	50828188	C	T	SNP	CYLD	ENST00000311559	human	ensembl	74_37	+1	known	silent	c.2535	p.P845	0.029	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_CAP-Gly_domain,pfam_Peptidase_C19/C67,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19/C67	-	no_errors	CYLD	HGNC	ENSG00000083799				121	0	0	45	38	45.7831
FAM86A	0	genome.wustl.edu	37	16	5139163	5139163	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	5139163	5139163	G	A	SNP	FAM86A	ENST00000427587	human	ensembl	74_37	-1	known	silent	c.837	p.Y279	0.322	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86A	HGNC	ENSG00000118894				176	0	0	84	61	42.069
COQ9	0	genome.wustl.edu	37	16	57494015	57494015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	57494015	57494015	C	T	SNP	COQ9	ENST00000262507	human	ensembl	74_37	+1	known	missense	c.920	p.T307M	1.000	NULL	pfam_COQ9,superfamily_Homeodomain-like,tigrfam_Ubiq_biosynth_COQ9	-	no_errors	COQ9	HGNC	ENSG00000088682				49	0	0	16	24	60
CCDC135	0	genome.wustl.edu	37	16	57756718	57756718	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	57756718	57756718	T	G	SNP	CCDC135	ENST00000360716	human	ensembl	74_37	+1	known	missense	c.1373	p.L458R	0.966	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625				99	0	0	68	36	34.6154
KATNB1	0	genome.wustl.edu	37	16	57778372	57778372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	57778372	57778372	G	A	SNP	KATNB1	ENST00000379661	human	ensembl	74_37	+1	known	missense	c.238	p.A80T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KATNB1	HGNC	ENSG00000140854				113	0	0	67	16	19.2771
CNOT1	0	genome.wustl.edu	37	16	58579291	58579291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	58579291	58579291	C	T	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.4111	p.A1371T	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				158	0	0	52	38	42.2222
PIGQ	0	genome.wustl.edu	37	16	624123	624123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	624123	624123	G	A	SNP	PIGQ	ENST00000026218	human	ensembl	74_37	+1	known	missense	c.49	p.G17R	1.000	NULL	pfam_GlcNAc_Gpi1	-	no_errors	PIGQ	HGNC	ENSG00000007541				58	0	0	26	12	31.5789
PIGQ	0	genome.wustl.edu	37	16	624252	624252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	624252	624252	G	A	SNP	PIGQ	ENST00000026218	human	ensembl	74_37	+1	known	missense	c.178	p.V60M	0.000	NULL	pfam_GlcNAc_Gpi1	-	no_errors	PIGQ	HGNC	ENSG00000007541				35	0	0	23	14	37.8378
CDH5	0	genome.wustl.edu	37	16	66436947	66436947	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	66436947	66436947	A	G	SNP	CDH5	ENST00000341529	human	ensembl	74_37	+1	known	missense	c.2230	p.S744G	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH5	HGNC	ENSG00000179776				24	0	0	20	15	42.8571
CES4A	0	genome.wustl.edu	37	16	67035282	67035282	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	67035282	67035282	A	G	SNP	CES4A	ENST00000326686	human	ensembl	74_37	+1	known	missense	c.608	p.E203G	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES4A	HGNC	ENSG00000172824				77	0	0	47	48	50.5263
EXOC3L1	0	genome.wustl.edu	37	16	67219121	67219121	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	67219121	67219121	C	T	SNP	EXOC3L1	ENST00000314586	human	ensembl	74_37	-1	known	missense	c.1667	p.S556N	0.989	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3L1	HGNC	ENSG00000179044				123	0	0	70	46	39.6552
EXOC3L1	0	genome.wustl.edu	37	16	67223035	67223035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	67223035	67223035	G	A	SNP	EXOC3L1	ENST00000314586	human	ensembl	74_37	-1	known	missense	c.95	p.A32V	0.997	NULL	pfam_Sec6	-	no_errors	EXOC3L1	HGNC	ENSG00000179044				25	0	0	17	14	45.1613
FHOD1	0	genome.wustl.edu	37	16	67270900	67270900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	67270900	67270900	C	T	SNP	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	missense	c.1111	p.G371R	0.959	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723				206	0	0	167	9	5.11364
KCTD19	0	genome.wustl.edu	37	16	67333364	67333364	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	67333364	67333364	C	A	SNP	KCTD19	ENST00000304372	human	ensembl	74_37	-1	known	missense	c.888	p.K296N	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold	-	no_errors	KCTD19	HGNC	ENSG00000168676				129	0	0	79	56	41.4815
HSD11B2	0	genome.wustl.edu	37	16	67470622	67470622	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	67470622	67470622	C	T	SNP	HSD11B2	ENST00000326152	human	ensembl	74_37	+1	known	missense	c.934	p.R312C	0.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH	-	no_errors	HSD11B2	HGNC	ENSG00000176387				163	0	0	134	31	18.7879
ATP6V0D1	0	genome.wustl.edu	37	16	67472920	67472920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	67472920	67472920	C	T	SNP	ATP6V0D1	ENST00000290949	human	ensembl	74_37	-1	known	missense	c.770	p.R257Q	1.000	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	-	no_errors	ATP6V0D1	HGNC	ENSG00000159720				251	1	0.396825	156	103	39.7683
ACD	0	genome.wustl.edu	37	16	67694125	67694125	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	67694125	67694125	C	A	SNP	ACD	ENST00000393919	human	ensembl	74_37	-1	known	missense	c.257	p.G86V	0.000	NULL	NULL	-	no_errors	ACD	HGNC	ENSG00000102977				93	0	0	135	13	8.78378
TSNAXIP1	0	genome.wustl.edu	37	16	67861838	67861838	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	67861838	67861838	G	T	SNP	TSNAXIP1	ENST00000388833	human	ensembl	74_37	+1	known	missense	c.1919	p.R640L	0.001	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904				181	0	0	96	62	39.2405
PSKH1	0	genome.wustl.edu	37	16	67943431	67943431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	67943431	67943431	C	T	SNP	PSKH1	ENST00000291041	human	ensembl	74_37	+1	known	missense	c.779	p.T260M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PSKH1	HGNC	ENSG00000159792				99	0	0	71	8	10.1266
ESRP2	0	genome.wustl.edu	37	16	68265115	68265115	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	68265115	68265115	G	A	SNP	ESRP2	ENST00000565858	human	ensembl	74_37	-1	known	silent	c.1707	p.R569	1.000	NULL	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067				73	0	0	48	14	22.5806
WFIKKN1	0	genome.wustl.edu	37	16	683446	683446	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	683446	683446	G	T	SNP	WFIKKN1	ENST00000319070	human	ensembl	74_37	+1	known	missense	c.1036	p.A346S	1.000	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN1	HGNC	ENSG00000127578				8	0	0	12	3	20
SMPD3	0	genome.wustl.edu	37	16	68405948	68405948	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	68405948	68405948	C	T	SNP	SMPD3	ENST00000219334	human	ensembl	74_37	-1	known	missense	c.137	p.R46H	1.000	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056				14	0	0	21	5	19.2308
HAS3	0	genome.wustl.edu	37	16	69143688	69143688	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	69143688	69143688	C	A	SNP	HAS3	ENST00000306560	human	ensembl	74_37	+1	known	silent	c.390	p.A130	0.926	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS3	HGNC	ENSG00000103044				71	0	0	88	5	5.37634
CIRH1A	0	genome.wustl.edu	37	16	69171777	69171777	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	69171777	69171777	A	G	SNP	CIRH1A	ENST00000314423	human	ensembl	74_37	+1	known	missense	c.425	p.D142G	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CIRH1A	HGNC	ENSG00000141076				50	0	0	29	22	43.1373
COG8	0	genome.wustl.edu	37	16	69373160	69373160	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	69373160	69373160	C	T	SNP	COG8	ENST00000306875	human	ensembl	74_37	-1	known	missense	c.296	p.R99H	1.000	pfam_COG8,pirsf_COG8_Metazoal_Plant	pfam_COG8,superfamily_Cullin_repeat-like_dom,pirsf_COG8_Metazoal_Plant	-	no_errors	COG8	HGNC	ENSG00000213380				53	0	0	31	17	35.4167
NOB1	0	genome.wustl.edu	37	16	69788525	69788525	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	69788525	69788525	C	A	SNP	NOB1	ENST00000268802	human	ensembl	74_37	-1	known	missense	c.168	p.K56N	0.972	smart_PIN_dom,pirsf_D-site_20S_pre-rRNA_nuclease	pfam_NOB1_Zn-bd,smart_PIN_dom,pirsf_D-site_20S_pre-rRNA_nuclease	-	no_errors	NOB1	HGNC	ENSG00000141101				105	0	0	44	40	47.619
WWP2	0	genome.wustl.edu	37	16	69832850	69832850	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	69832850	69832850	T	C	SNP	WWP2	ENST00000544162	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	WWP2	HGNC	ENSG00000198373				42	0	0	17	10	37.037
WWP2	0	genome.wustl.edu	37	16	69905707	69905707	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	69905707	69905707	G	T	SNP	WWP2	ENST00000356003	human	ensembl	74_37	+1	known	silent	c.576	p.R192	1.000	NULL	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	WWP2	HGNC	ENSG00000198373				110	0	0	57	24	29.6296
WDR90	0	genome.wustl.edu	37	16	700148	700148	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	700148	700148	A	G	SNP	WDR90	ENST00000549091	human	ensembl	74_37	+1	novel	missense	c.260	p.H87R	1.000	pfam_DUF667	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				384	0	0	276	175	38.8027
AARS	0	genome.wustl.edu	37	16	70310972	70310972	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	70310972	70310972	C	T	SNP	AARS	ENST00000261772	human	ensembl	74_37	-1	known	missense	c.230	p.R77Q	1.000	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS	HGNC	ENSG00000090861				113	0	0	51	42	45.1613
FUK	0	genome.wustl.edu	37	16	70497538	70497538	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	70497538	70497538	G	A	SNP	FUK	ENST00000378912	human	ensembl	74_37	+1	known	missense	c.95	p.R32Q	1.000	NULL	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353				116	0	0	90	18	16.6667
COG4	0	genome.wustl.edu	37	16	70514920	70514920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	70514920	70514920	C	T	SNP	COG4	ENST00000323786	human	ensembl	74_37	-1	known	missense	c.2363	p.R788H	1.000	NULL	pfam_COG_su4,smart_COG_su4	-	no_errors	COG4	HGNC	ENSG00000103051				75	0	0	92	7	7.07071
DHX38	0	genome.wustl.edu	37	16	72143392	72143392	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	72143392	72143392	G	A	SNP	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	missense	c.3460	p.A1154T	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				30	0	0	31	6	16.2162
ZFHX3	0	genome.wustl.edu	37	16	72830944	72830944	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	72830944	72830944	T	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.5637	p.K1879N	0.833	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				119	0	0	83	30	26.5487
ZFHX3	0	genome.wustl.edu	37	16	72831385	72831385	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	72831385	72831385	T	C	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	silent	c.5196	p.Q1732	0.953	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				38	0	0	26	12	31.5789
ZFHX3	0	genome.wustl.edu	37	16	72991553	72991553	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	72991553	72991553	T	C	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.2492	p.N831S	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				181	0	0	95	73	43.4524
MLKL	0	genome.wustl.edu	37	16	74729555	74729555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	74729555	74729555	C	T	SNP	MLKL	ENST00000308807	human	ensembl	74_37	-1	known	missense	c.101	p.R34H	0.006	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLKL	HGNC	ENSG00000168404				75	0	0	36	15	29.4118
WDR59	0	genome.wustl.edu	37	16	74949595	74949595	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	74949595	74949595	T	C	SNP	WDR59	ENST00000562854	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	WDR59	HGNC	ENSG00000103091				12	0	0	3	4	57.1429
LDHD	0	genome.wustl.edu	37	16	75146325	75146325	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	75146325	75146325	C	T	SNP	LDHD	ENST00000300051	human	ensembl	74_37	-1	known	missense	c.1453	p.V485M	0.003	pfam_FAD-linked_oxidase_C,superfamily_FAD-linked_Oxase-like_C	pfam_FAD-linked_oxidase_C,pfam_Oxid_FAD_bind_N,superfamily_FAD-linked_Oxase-like_C,superfamily_FAD-bd_2	-	no_errors	LDHD	HGNC	ENSG00000166816				51	0	0	36	16	30.7692
BCAR1	0	genome.wustl.edu	37	16	75263368	75263368	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	75263368	75263368	C	T	SNP	BCAR1	ENST00000566982	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BCAR1	HGNC	ENSG00000050820				9	0	0	6	7	53.8462
BCAR1	0	genome.wustl.edu	37	16	75276727	75276727	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	75276727	75276727	G	T	SNP	BCAR1	ENST00000418647	human	ensembl	74_37	-1	known	missense	c.412	p.P138T	0.000	NULL	pfam_CAS_DUF3513,pfam_Serine_rich,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	BCAR1	HGNC	ENSG00000050820				76	0	0	52	52	50
CHST6	0	genome.wustl.edu	37	16	75513267	75513267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	75513267	75513267	C	T	SNP	CHST6	ENST00000332272	human	ensembl	74_37	-1	known	missense	c.460	p.A154T	0.271	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST6	HGNC	ENSG00000183196				86	0	0	130	7	5.10949
ADAMTS18	0	genome.wustl.edu	37	16	77389931	77389931	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	77389931	77389931	C	T	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.1366	p.A456T	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				116	0	0	54	6	10
HAGHL	0	genome.wustl.edu	37	16	779157	779157	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	779157	779157	G	A	SNP	HAGHL	ENST00000341413	human	ensembl	74_37	+1	known	missense	c.862	p.V288M	0.000	NULL	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	HAGHL	HGNC	ENSG00000103253				40	0	0	16	17	51.5152
NARFL	0	genome.wustl.edu	37	16	780543	780543	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	780543	780543	C	T	SNP	NARFL	ENST00000251588	human	ensembl	74_37	-1	known	silent	c.1305	p.A435	0.000	pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARFL	HGNC	ENSG00000103245				107	0	0	68	40	37.037
CDYL2	0	genome.wustl.edu	37	16	80667009	80667009	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	80667009	80667009	A	G	SNP	CDYL2	ENST00000570137	human	ensembl	74_37	-1	known	silent	c.741	p.C247	1.000	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446				162	0	0	135	13	8.78378
CMC2	0	genome.wustl.edu	37	16	81009998	81009998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	81009998	81009998	C	T	SNP	CMC2	ENST00000219400	human	ensembl	74_37	-1	known	missense	c.232	p.E78K	0.711	NULL	pfam_Cyt_c_biogenesis_Cmc1-like	-	no_errors	CMC2	HGNC	ENSG00000103121				42	0	0	12	3	20
PLCG2	0	genome.wustl.edu	37	16	81944244	81944244	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	81944244	81944244	G	A	SNP	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	missense	c.1853	p.R618H	0.965	superfamily_PLC-like_Pdiesterase_TIM-brl,smart_SH2,pirsf_PLC-gamma,pfscan_SH2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				334	0	0	301	60	16.6205
MSLNL	0	genome.wustl.edu	37	16	819623	819623	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	819623	819623	C	A	SNP	MSLNL	ENST00000293892	human	ensembl	74_37	-1	known	missense	c.2967	p.W989C	0.000	NULL	pfam_Mesothelin	-	no_errors	MSLNL	HGNC	ENSG00000162006				29	0	0	15	15	50
CDH13	0	genome.wustl.edu	37	16	83378590	83378590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	83378590	83378590	G	A	SNP	CDH13	ENST00000566620	human	ensembl	74_37	+1	known	missense	c.760	p.V254I	0.998	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945				140	0	0	73	53	42.0635
CDH13	0	genome.wustl.edu	37	16	83712050	83712050	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	83712050	83712050	C	T	SNP	CDH13	ENST00000566620	human	ensembl	74_37	+1	known	nonsense	c.1522	p.Q508*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945				54	0	0	64	5	7.24638
SLC38A8	0	genome.wustl.edu	37	16	84075680	84075680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	84075680	84075680	C	T	SNP	SLC38A8	ENST00000299709	human	ensembl	74_37	-1	known	missense	c.83	p.G28D	0.971	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A8	HGNC	ENSG00000166558				167	0	0	138	24	14.8148
HSDL1	0	genome.wustl.edu	37	16	84163718	84163718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	84163718	84163718	G	A	SNP	HSDL1	ENST00000219439	human	ensembl	74_37	-1	known	missense	c.539	p.A180V	0.239	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSDL1	HGNC	ENSG00000103160				163	0	0	142	13	8.3871
ATP2C2	0	genome.wustl.edu	37	16	84459366	84459366	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	84459366	84459366	G	A	SNP	ATP2C2	ENST00000262429	human	ensembl	74_37	+1	known	silent	c.945	p.S315	0.992	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C2	HGNC	ENSG00000064270				296	0	0	143	72	33.4884
KLHL36	0	genome.wustl.edu	37	16	84691224	84691224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	84691224	84691224	G	A	SNP	KLHL36	ENST00000564996	human	ensembl	74_37	+1	known	missense	c.811	p.V271M	0.584	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686				70	0	0	52	36	40.9091
IRF8	0	genome.wustl.edu	37	16	85948113	85948113	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	85948113	85948113	C	T	SNP	IRF8	ENST00000268638	human	ensembl	74_37	+1	known	silent	c.588	p.D196	0.002	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF8	HGNC	ENSG00000140968				57	0	0	55	23	29.4872
BANP	0	genome.wustl.edu	37	16	88052119	88052119	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	88052119	88052119	G	A	SNP	BANP	ENST00000286122	human	ensembl	74_37	+1	known	silent	c.717	p.L239	1.000	NULL	pfam_BEN_domain	-	no_errors	BANP	HGNC	ENSG00000172530				70	0	0	38	21	35.5932
SNAI3	0	genome.wustl.edu	37	16	88747836	88747836	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	88747836	88747836	G	T	SNP	SNAI3	ENST00000332281	human	ensembl	74_37	-1	known	silent	c.363	p.P121	0.958	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI3	HGNC	ENSG00000185669				157	1	0.632911	109	80	42.328
CDH15	0	genome.wustl.edu	37	16	89260206	89260206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	89260206	89260206	G	A	SNP	CDH15	ENST00000289746	human	ensembl	74_37	+1	known	missense	c.2036	p.S679N	0.002	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910				17	0	0	21	11	34.375
DEF8	0	genome.wustl.edu	37	16	90025682	90025682	+	RNA	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	90025682	90025682	T	A	SNP	DEF8	ENST00000562044	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DEF8	HGNC	ENSG00000140995				14	0	0	9	9	50
CENPBD1	0	genome.wustl.edu	37	16	90038104	90038104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	90038104	90038104	G	A	SNP	CENPBD1	ENST00000314994	human	ensembl	74_37	-1	known	missense	c.227	p.A76V	0.246	superfamily_Homeodomain-like	pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	-	no_errors	CENPBD1	HGNC	ENSG00000177946				13	0	0	5	11	68.75
GRIN2A	0	genome.wustl.edu	37	16	9863026	9863026	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	9863026	9863026	C	T	SNP	GRIN2A	ENST00000463531	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.007	-	-	-	no_errors	GRIN2A	HGNC	ENSG00000183454				35	0	0	22	5	18.5185
MYH2	0	genome.wustl.edu	37	17	10447416	10447416	+	Splice_Site	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	10447416	10447416	C	T	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	splice_site	c.533+1	e4+1	1.000	-	-	-	no_errors	MYH2	HGNC	ENSG00000125414				69	0	0	30	14	31.8182
DNAH9	0	genome.wustl.edu	37	17	11520831	11520831	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	11520831	11520831	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	silent	c.1008	p.R336	0.002	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				84	0	0	53	38	41.7582
DNAH9	0	genome.wustl.edu	37	17	11784614	11784614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	11784614	11784614	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.10690	p.P3564S	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				122	0	0	54	40	42.5532
ELAC2	0	genome.wustl.edu	37	17	12896274	12896274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	12896274	12896274	C	T	SNP	ELAC2	ENST00000338034	human	ensembl	74_37	-1	known	missense	c.2342	p.R781H	1.000	NULL	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744				120	0	0	91	7	7.14286
MYO1C	0	genome.wustl.edu	37	17	1395772	1395772	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	1395772	1395772	G	A	SNP	MYO1C	ENST00000359786	human	ensembl	74_37	-1	known	nonsense	c.10	p.Q4*	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1C	HGNC	ENSG00000197879				14	0	0	9	11	55
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				86	0	0	61	33	35.1064
TVP23C	0	genome.wustl.edu	37	17	15457117	15457117	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	15457117	15457117	A	G	SNP	TVP23C	ENST00000225576	human	ensembl	74_37	-1	known	missense	c.122	p.L41S	1.000	pfam_DUF846_euk	pfam_DUF846_euk	-	no_errors	TVP23C	HGNC	ENSG00000175106				247	0	0	131	8	5.7554
CDRT1	0	genome.wustl.edu	37	17	15522783	15522783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	15522783	15522783	C	T	SNP	CDRT1	ENST00000395906	human	ensembl	74_37	-1	known	missense	c.44	p.R15H	0.036	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	CDRT1	HGNC	ENSG00000241322				275	0	0	176	50	22.1239
ENSG00000233002	0	genome.wustl.edu	37	17	15642029	15642029	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	15642029	15642029	C	A	SNP	ENSG00000233002	ENST00000433873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.927	-	-	-	no_errors	AC005324.6	Clone_based_vega_gene	ENSG00000233002				169	0	0	101	37	26.8116
WDR81	0	genome.wustl.edu	37	17	1631437	1631437	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	1631437	1631437	C	A	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.3184	p.L1062M	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				30	0	0	22	4	15.3846
WDR81	0	genome.wustl.edu	37	17	1631632	1631632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	1631632	1631632	G	A	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.3379	p.E1127K	0.672	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				97	0	0	66	37	35.9223
ZNF624	0	genome.wustl.edu	37	17	16526942	16526942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	16526942	16526942	C	T	SNP	ZNF624	ENST00000311331	human	ensembl	74_37	-1	known	missense	c.1258	p.D420N	0.376	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566				101	0	0	27	12	30.7692
PLD6	0	genome.wustl.edu	37	17	17109597	17109597	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	17109597	17109597	C	A	SNP	PLD6	ENST00000321560	human	ensembl	74_37	-1	known	nonsense	c.4	p.G2*	0.001	NULL	smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD6	HGNC	ENSG00000179598				9	0	0	3	8	72.7273
RAI1	0	genome.wustl.edu	37	17	17700540	17700540	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	17700540	17700540	C	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	silent	c.4278	p.T1426	0.085	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				94	0	0	86	5	5.49451
MYO15A	0	genome.wustl.edu	37	17	18023437	18023437	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	18023437	18023437	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	silent	c.1323	p.A441	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				95	0	0	40	29	42.029
FLII	0	genome.wustl.edu	37	17	18154644	18154644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	18154644	18154644	G	A	SNP	FLII	ENST00000327031	human	ensembl	74_37	-1	known	missense	c.1531	p.P511S	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731				93	0	0	65	23	26.1364
TOP3A	0	genome.wustl.edu	37	17	18211732	18211732	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	18211732	18211732	T	C	SNP	TOP3A	ENST00000321105	human	ensembl	74_37	-1	known	missense	c.247	p.T83A	1.000	pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain	pfam_Topo_IA_cen,pfam_Znf_GRF,pfam_Toprim_domain,pfam_Topo_IA_Znf,superfamily_Topo_IA_core_domain,superfamily_Znf_CCHC,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3A	HGNC	ENSG00000177302				38	0	0	10	11	52.381
KRT17P2	0	genome.wustl.edu	37	17	18333010	18333010	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	18333010	18333010	C	T	SNP	KRT17P2	ENST00000326333	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	KRT17P2	HGNC	ENSG00000186831				16	0	0	1	8	88.8889
EPN2	0	genome.wustl.edu	37	17	19186555	19186555	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	19186555	19186555	C	T	SNP	EPN2	ENST00000314728	human	ensembl	74_37	+1	known	silent	c.123	p.T41	0.000	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134				121	0	0	63	37	37
FAM27L	0	genome.wustl.edu	37	17	21825562	21825562	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	21825562	21825562	G	A	SNP	FAM27L	ENST00000426869	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	FAM27L	HGNC	ENSG00000178130				91	0	0	75	4	5.06329
MNT	0	genome.wustl.edu	37	17	2290445	2290445	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	2290445	2290445	T	C	SNP	MNT	ENST00000174618	human	ensembl	74_37	-1	known	missense	c.1499	p.H500R	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MNT	HGNC	ENSG00000070444				18	0	0	14	10	41.6667
MNT	0	genome.wustl.edu	37	17	2290577	2290577	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	2290577	2290577	T	C	SNP	MNT	ENST00000174618	human	ensembl	74_37	-1	known	missense	c.1367	p.N456S	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MNT	HGNC	ENSG00000070444				34	0	0	31	17	35.4167
METTL16	0	genome.wustl.edu	37	17	2324151	2324151	+	Silent	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	2324151	2324151	T	G	SNP	METTL16	ENST00000263092	human	ensembl	74_37	-1	known	silent	c.936	p.I312	0.672	pirsf_S-AdoMet-dep_MeTrfase_Mett10D	pfam_rRNA_lsu_MeTfrase_F-like,pirsf_S-AdoMet-dep_MeTrfase_Mett10D	-	no_errors	METTL16	HGNC	ENSG00000127804				259	0	0	117	77	39.6907
WSB1	0	genome.wustl.edu	37	17	25639361	25639361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	25639361	25639361	C	T	SNP	WSB1	ENST00000262394	human	ensembl	74_37	+1	known	missense	c.1232	p.S411F	0.989	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WSB1	HGNC	ENSG00000109046				387	1	0.257732	197	124	38.6293
PIGS	0	genome.wustl.edu	37	17	26888587	26888587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	26888587	26888587	C	T	SNP	PIGS	ENST00000308360	human	ensembl	74_37	-1	known	missense	c.529	p.E177K	0.999	pfam_PtdIno-glycan_biosynth_class_S	pfam_PtdIno-glycan_biosynth_class_S	-	no_errors	PIGS	HGNC	ENSG00000087111				35	0	0	15	13	46.4286
SUPT6H	0	genome.wustl.edu	37	17	27001380	27001380	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	27001380	27001380	T	A	SNP	SUPT6H	ENST00000314616	human	ensembl	74_37	+1	known	missense	c.189	p.D63E	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111				41	0	0	35	11	23.913
SUPT6H	0	genome.wustl.edu	37	17	27005589	27005589	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	27005589	27005589	G	T	SNP	SUPT6H	ENST00000314616	human	ensembl	74_37	+1	known	missense	c.1143	p.K381N	1.000	pirsf_TF_Spt6	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111				80	0	0	28	28	50
RAB34	0	genome.wustl.edu	37	17	27041919	27041919	+	Splice_Site	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	27041919	27041919	C	T	SNP	RAB34	ENST00000447716	human	ensembl	74_37	-1	known	splice_site	c.776-1	e10-1	1.000	-	-	-	no_errors	RAB34	HGNC	ENSG00000109113				72	0	0	48	13	21.3115
TLCD1	0	genome.wustl.edu	37	17	27051740	27051740	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	27051740	27051740	T	C	SNP	TLCD1	ENST00000292090	human	ensembl	74_37	-1	known	missense	c.532	p.M178V	1.000	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	TLCD1	HGNC	ENSG00000160606				146	0	0	77	56	42.1053
PHF12	0	genome.wustl.edu	37	17	27233509	27233509	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	27233509	27233509	C	T	SNP	PHF12	ENST00000332830	human	ensembl	74_37	-1	known	missense	c.2707	p.E903K	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118				56	0	0	37	26	41.2698
PIPOX	0	genome.wustl.edu	37	17	27371936	27371936	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	27371936	27371936	G	A	SNP	PIPOX	ENST00000323372	human	ensembl	74_37	+1	known	silent	c.174	p.A58	0.685	pfam_FAD-dep_OxRdtase,tigrfam_SoxA_mon	pfam_FAD-dep_OxRdtase,tigrfam_SoxA_mon	-	no_errors	PIPOX	HGNC	ENSG00000179761				86	0	0	48	20	29.4118
CORO6	0	genome.wustl.edu	37	17	27942982	27942982	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	27942982	27942982	G	C	SNP	CORO6	ENST00000345068	human	ensembl	74_37	-1	known	missense	c.1274	p.A425G	0.997	NULL	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO6	HGNC	ENSG00000167549				14	0	0	13	8	38.0952
CORO6	0	genome.wustl.edu	37	17	27943832	27943832	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	27943832	27943832	C	T	SNP	CORO6	ENST00000345068	human	ensembl	74_37	-1	known	missense	c.892	p.D298N	0.971	pfam_DUF1900,superfamily_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO6	HGNC	ENSG00000167549				158	0	0	95	59	38.3117
CORO6	0	genome.wustl.edu	37	17	27948260	27948260	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	27948260	27948260	G	A	SNP	CORO6	ENST00000345068	human	ensembl	74_37	-1	known	silent	c.180	p.I60	0.881	pfam_DUF1899,superfamily_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO6	HGNC	ENSG00000167549				58	0	0	29	22	43.1373
EFCAB5	0	genome.wustl.edu	37	17	28417587	28417587	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	28417587	28417587	T	C	SNP	EFCAB5	ENST00000394835	human	ensembl	74_37	+1	known	missense	c.3832	p.C1278R	0.000	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB5	HGNC	ENSG00000176927				159	0	0	61	42	40.7767
ENSG00000214719	0	genome.wustl.edu	37	17	28961033	28961033	+	RNA	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	28961033	28961033	T	G	SNP	ENSG00000214719	ENST00000398849	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	AC005562.1	Clone_based_vega_gene	ENSG00000214719				27	0	0	21	4	16
OR1D2	0	genome.wustl.edu	37	17	2995926	2995926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	2995926	2995926	C	T	SNP	OR1D2	ENST00000331459	human	ensembl	74_37	-1	known	missense	c.365	p.R122H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1D2	HGNC	ENSG00000184166				161	0	0	74	50	40.3226
OR1G1	0	genome.wustl.edu	37	17	3030645	3030645	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	3030645	3030645	G	A	SNP	OR1G1	ENST00000328890	human	ensembl	74_37	-1	known	silent	c.201	p.S67	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1G1	HGNC	ENSG00000183024				113	0	0	58	29	33.3333
LRRC37B	0	genome.wustl.edu	37	17	30348616	30348616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	30348616	30348616	C	T	SNP	LRRC37B	ENST00000341671	human	ensembl	74_37	+1	known	missense	c.451	p.R151C	0.044	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158				106	0	0	71	23	24.4681
CDK5R1	0	genome.wustl.edu	37	17	30815228	30815228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	30815228	30815228	C	T	SNP	CDK5R1	ENST00000313401	human	ensembl	74_37	+1	known	missense	c.590	p.T197M	1.000	pfam_CDK5_activator,superfamily_Cyclin-like,pirsf_CDK5_activator	pfam_CDK5_activator,superfamily_Cyclin-like,pirsf_CDK5_activator	-	no_errors	CDK5R1	HGNC	ENSG00000176749				119	0	0	84	36	30
LIG3	0	genome.wustl.edu	37	17	33326360	33326360	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	33326360	33326360	C	T	SNP	LIG3	ENST00000378526	human	ensembl	74_37	+1	known	silent	c.2148	p.Y716	1.000	pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156				59	0	0	45	20	30.7692
RAD51D	0	genome.wustl.edu	37	17	33433310	33433310	+	Splice_Site	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	33433310	33433310	C	A	SNP	RAD51D	ENST00000592430	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	0.448	-	-	-	no_errors	RAD51D	HGNC	ENSG00000185379				37	0	0	22	10	31.25
UNC45B	0	genome.wustl.edu	37	17	33479993	33479993	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	33479993	33479993	C	T	SNP	UNC45B	ENST00000268876	human	ensembl	74_37	+1	known	missense	c.463	p.R155W	0.634	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161				114	0	0	71	31	30.3922
SPATA22	0	genome.wustl.edu	37	17	3349889	3349889	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	3349889	3349889	A	G	SNP	SPATA22	ENST00000397168	human	ensembl	74_37	-1	known	missense	c.679	p.S227P	0.000	NULL	NULL	-	no_errors	SPATA22	HGNC	ENSG00000141255				22	0	0	9	6	40
SLFN5	0	genome.wustl.edu	37	17	33592194	33592194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	33592194	33592194	C	T	SNP	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	missense	c.1963	p.R655C	0.923	pfam_DUF2075,superfamily_P-loop_NTPase	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750				180	0	0	121	27	18.2432
CCL5	0	genome.wustl.edu	37	17	34207248	34207248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	34207248	34207248	G	A	SNP	CCL5	ENST00000293272	human	ensembl	74_37	-1	known	missense	c.62	p.A21V	0.504	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL5	HGNC	ENSG00000161570				18	0	0	20	6	23.0769
SYNRG	0	genome.wustl.edu	37	17	35899332	35899332	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	35899332	35899332	C	T	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	missense	c.3382	p.A1128T	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114				57	0	0	33	8	19.5122
SYNRG	0	genome.wustl.edu	37	17	35902100	35902100	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	35902100	35902100	A	T	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	missense	c.3176	p.L1059Q	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114				150	0	0	45	36	44.4444
GSG2	0	genome.wustl.edu	37	17	3628631	3628631	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	3628631	3628631	A	G	SNP	GSG2	ENST00000325418	human	ensembl	74_37	+1	known	missense	c.1402	p.S468G	0.979	NULL	pfam_DUF3635,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	GSG2	HGNC	ENSG00000177602				99	0	0	72	6	7.69231
GSG2	0	genome.wustl.edu	37	17	3628867	3628867	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	3628867	3628867	C	T	SNP	GSG2	ENST00000325418	human	ensembl	74_37	+1	known	silent	c.1638	p.S546	0.062	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_DUF3635,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	GSG2	HGNC	ENSG00000177602				108	0	0	31	31	50
GPR179	0	genome.wustl.edu	37	17	36492878	36492878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	36492878	36492878	G	A	SNP	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	missense	c.1210	p.R404C	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888				23	0	0	16	11	40.7407
ITGAE	0	genome.wustl.edu	37	17	3660327	3660327	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	3660327	3660327	C	T	SNP	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	silent	c.1122	p.A374	0.001	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAE	HGNC	ENSG00000083457				240	0	0	141	84	37.3333
PIP4K2B	0	genome.wustl.edu	37	17	36926744	36926744	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	36926744	36926744	G	A	SNP	PIP4K2B	ENST00000269554	human	ensembl	74_37	-1	known	missense	c.1115	p.T372M	0.996	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2B	HGNC	ENSG00000141720				149	0	0	112	67	37.4302
ERBB2	0	genome.wustl.edu	37	17	37873670	37873670	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	37873670	37873670	C	A	SNP	ERBB2	ENST00000269571	human	ensembl	74_37	+1	known	missense	c.1835	p.P612H	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736				76	0	0	52	27	34.1772
IKZF3	0	genome.wustl.edu	37	17	37922200	37922200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	37922200	37922200	C	T	SNP	IKZF3	ENST00000346872	human	ensembl	74_37	-1	known	missense	c.1373	p.R458H	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF3	HGNC	ENSG00000161405				163	0	0	103	22	17.6
IKZF3	0	genome.wustl.edu	37	17	37949116	37949116	+	Silent	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	37949116	37949116	T	A	SNP	IKZF3	ENST00000346872	human	ensembl	74_37	-1	known	silent	c.234	p.G78	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF3	HGNC	ENSG00000161405				80	0	0	51	6	10.5263
GSDMB	0	genome.wustl.edu	37	17	38062399	38062399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	38062399	38062399	C	T	SNP	GSDMB	ENST00000360317	human	ensembl	74_37	-1	known	missense	c.853	p.G285S	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMB	HGNC	ENSG00000073605				111	0	0	44	28	38.8889
RAPGEFL1	0	genome.wustl.edu	37	17	38345469	38345469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	38345469	38345469	G	A	SNP	RAPGEFL1	ENST00000264644	human	ensembl	74_37	+1	known	missense	c.338	p.R113H	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	-	no_errors	RAPGEFL1	HGNC	ENSG00000108352				201	0	0	119	60	33.5196
KRT222	0	genome.wustl.edu	37	17	38812661	38812661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	38812661	38812661	G	A	SNP	KRT222	ENST00000394052	human	ensembl	74_37	-1	known	missense	c.881	p.A294V	0.002	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT222	HGNC	ENSG00000213424				117	0	0	34	19	35.8491
KRTAP4-11	0	genome.wustl.edu	37	17	39274012	39274012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	39274012	39274012	G	A	SNP	KRTAP4-11	ENST00000391413	human	ensembl	74_37	-1	known	missense	c.556	p.R186C	0.999	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-11	HGNC	ENSG00000212721				17	0	0	16	4	20
KRTAP4-11	0	genome.wustl.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	39274087	39274087	G	C	SNP	KRTAP4-11	ENST00000391413	human	ensembl	74_37	-1	known	missense	c.481	p.L161V	0.005	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-11	HGNC	ENSG00000212721				20	0	0	38	4	9.52381
KRT34	0	genome.wustl.edu	37	17	39535281	39535281	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	39535281	39535281	G	A	SNP	KRT34	ENST00000394001	human	ensembl	74_37	-1	known	silent	c.1150	p.L384	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT34	HGNC	ENSG00000131737				182	0	0	115	77	40.1042
KRT35	0	genome.wustl.edu	37	17	39634622	39634622	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	39634622	39634622	C	T	SNP	KRT35	ENST00000393989	human	ensembl	74_37	-1	known	silent	c.990	p.Q330	1.000	pfam_IF,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT35	HGNC	ENSG00000197079				61	0	0	49	13	20.9677
KRT9	0	genome.wustl.edu	37	17	39727639	39727639	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	39727639	39727639	G	T	SNP	KRT9	ENST00000246662	human	ensembl	74_37	-1	known	silent	c.606	p.S202	0.000	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT9	HGNC	ENSG00000171403				154	0	0	83	53	38.9706
KRT14	0	genome.wustl.edu	37	17	39743060	39743060	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	39743060	39743060	G	T	SNP	KRT14	ENST00000167586	human	ensembl	74_37	-1	known	silent	c.27	p.T9	1.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT14	HGNC	ENSG00000186847				11	0	0	10	3	23.0769
JUP	0	genome.wustl.edu	37	17	39925369	39925369	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	39925369	39925369	C	T	SNP	JUP	ENST00000310706	human	ensembl	74_37	-1	known	missense	c.559	p.A187T	1.000	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801				39	0	0	27	28	50.9091
JUP	0	genome.wustl.edu	37	17	39925702	39925702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	39925702	39925702	C	T	SNP	JUP	ENST00000310706	human	ensembl	74_37	-1	known	missense	c.436	p.E146K	1.000	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801				28	0	0	8	8	50
KLHL10	0	genome.wustl.edu	37	17	39998199	39998199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	39998199	39998199	G	A	SNP	KLHL10	ENST00000293303	human	ensembl	74_37	+1	known	missense	c.319	p.D107N	0.989	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL10	HGNC	ENSG00000161594				109	0	0	63	22	25.8824
STAT5B	0	genome.wustl.edu	37	17	40375477	40375477	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	40375477	40375477	G	A	SNP	STAT5B	ENST00000293328	human	ensembl	74_37	-1	known	missense	c.473	p.T158I	1.000	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757				77	0	0	81	23	22.1154
FAM134C	0	genome.wustl.edu	37	17	40735516	40735516	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	40735516	40735516	C	A	SNP	FAM134C	ENST00000309428	human	ensembl	74_37	-1	known	missense	c.810	p.Q270H	1.000	NULL	NULL	-	no_errors	FAM134C	HGNC	ENSG00000141699				49	0	0	55	19	25.6757
WNK4	0	genome.wustl.edu	37	17	40947844	40947844	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	40947844	40947844	G	A	SNP	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	missense	c.3224	p.R1075H	0.968	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				62	0	0	32	26	44.8276
AOC3	0	genome.wustl.edu	37	17	41004852	41004852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	41004852	41004852	G	A	SNP	AOC3	ENST00000308423	human	ensembl	74_37	+1	known	missense	c.1492	p.A498T	0.002	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471				104	0	0	59	9	13.2353
AOC4P	0	genome.wustl.edu	37	17	41019922	41019922	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	41019922	41019922	A	G	SNP	AOC4P	ENST00000562301	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AOC4P	HGNC	ENSG00000260105				61	0	0	47	5	9.61538
MPP3	0	genome.wustl.edu	37	17	41891581	41891581	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	41891581	41891581	G	A	SNP	MPP3	ENST00000398389	human	ensembl	74_37	-1	known	silent	c.1158	p.R386	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP3	HGNC	ENSG00000161647				232	0	0	128	97	43.1111
MPP3	0	genome.wustl.edu	37	17	41907096	41907096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	41907096	41907096	G	A	SNP	MPP3	ENST00000398389	human	ensembl	74_37	-1	known	missense	c.367	p.P123S	1.000	superfamily_PDZ	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP3	HGNC	ENSG00000161647				120	0	0	56	25	30.8642
HDAC5	0	genome.wustl.edu	37	17	42161219	42161219	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	42161219	42161219	G	T	SNP	HDAC5	ENST00000225983	human	ensembl	74_37	-1	known	missense	c.2312	p.P771H	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840				71	0	0	78	13	14.2857
HDAC5	0	genome.wustl.edu	37	17	42162397	42162397	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	42162397	42162397	T	G	SNP	HDAC5	ENST00000225983	human	ensembl	74_37	-1	known	missense	c.2180	p.K727T	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840				77	0	0	46	39	45.8824
HDAC5	0	genome.wustl.edu	37	17	42165014	42165014	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	42165014	42165014	C	A	SNP	HDAC5	ENST00000225983	human	ensembl	74_37	-1	known	missense	c.1653	p.E551D	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840				189	0	0	73	55	42.9688
UBTF	0	genome.wustl.edu	37	17	42290299	42290299	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	42290299	42290299	T	C	SNP	UBTF	ENST00000302904	human	ensembl	74_37	-1	known	missense	c.548	p.H183R	1.000	superfamily_HMG_box_dom,superfamily_ARM-type_fold	pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_ARM-type_fold,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	UBTF	HGNC	ENSG00000108312				152	0	0	68	48	41.3793
SLC4A1	0	genome.wustl.edu	37	17	42328618	42328618	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	42328618	42328618	G	A	SNP	SLC4A1	ENST00000262418	human	ensembl	74_37	-1	known	missense	c.2564	p.A855V	0.758	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939				59	0	0	42	4	8.69565
ITGA2B	0	genome.wustl.edu	37	17	42453457	42453457	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	42453457	42453457	T	C	SNP	ITGA2B	ENST00000262407	human	ensembl	74_37	-1	known	missense	c.2444	p.Y815C	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961				148	0	0	78	54	40.9091
DBF4B	0	genome.wustl.edu	37	17	42818725	42818725	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	42818725	42818725	T	C	SNP	DBF4B	ENST00000315005	human	ensembl	74_37	+1	known	silent	c.735	p.H245	1.000	NULL	pfam_Znf_DBF,superfamily_BRCT_dom,smart_Znf_DBF	-	no_errors	DBF4B	HGNC	ENSG00000161692				131	0	0	64	42	39.6226
EFTUD2	0	genome.wustl.edu	37	17	42940144	42940144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	42940144	42940144	G	A	SNP	EFTUD2	ENST00000426333	human	ensembl	74_37	-1	known	missense	c.1544	p.T515I	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883				48	0	0	31	18	36.7347
FMNL1	0	genome.wustl.edu	37	17	43318567	43318567	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	43318567	43318567	C	T	SNP	FMNL1	ENST00000328118	human	ensembl	74_37	+1	known	silent	c.1302	p.S434	0.996	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL1	HGNC	ENSG00000184922				70	0	0	63	25	28.4091
SPATA32	0	genome.wustl.edu	37	17	43332690	43332690	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	43332690	43332690	G	A	SNP	SPATA32	ENST00000331780	human	ensembl	74_37	-1	known	nonsense	c.859	p.R287*	0.009	NULL	NULL	-	no_errors	SPATA32	HGNC	ENSG00000184361				126	1	0.787402	63	30	32.2581
SPATA32	0	genome.wustl.edu	37	17	43333435	43333435	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	43333435	43333435	C	A	SNP	SPATA32	ENST00000331780	human	ensembl	74_37	-1	known	missense	c.114	p.E38D	0.003	NULL	NULL	-	no_errors	SPATA32	HGNC	ENSG00000184361				22	0	0	11	5	31.25
MAP3K14	0	genome.wustl.edu	37	17	43363912	43363912	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	43363912	43363912	G	A	SNP	MAP3K14	ENST00000344686	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.786	-	-	-	no_errors	MAP3K14	HGNC	ENSG00000006062				10	0	0	21	3	12.5
ARHGAP27	0	genome.wustl.edu	37	17	43473180	43473180	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	43473180	43473180	G	A	SNP	ARHGAP27	ENST00000428638	human	ensembl	74_37	-1	known	missense	c.2422	p.R808C	0.008	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_WW_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP27	HGNC	ENSG00000159314				11	0	0	9	4	30.7692
KANSL1	0	genome.wustl.edu	37	17	44110528	44110528	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	44110528	44110528	C	T	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	missense	c.2755	p.A919T	0.991	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				16	0	0	13	4	23.5294
KANSL1	0	genome.wustl.edu	37	17	44115995	44115995	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	44115995	44115995	G	T	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	missense	c.2450	p.P817H	0.810	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				66	0	0	48	32	40
SPNS2	0	genome.wustl.edu	37	17	4436551	4436551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	4436551	4436551	G	A	SNP	SPNS2	ENST00000329078	human	ensembl	74_37	+1	known	missense	c.1102	p.A368T	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS2	HGNC	ENSG00000183018				33	0	0	35	4	10.2564
SPNS2	0	genome.wustl.edu	37	17	4437134	4437134	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	4437134	4437134	G	A	SNP	SPNS2	ENST00000329078	human	ensembl	74_37	+1	known	missense	c.1330	p.A444T	0.968	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS2	HGNC	ENSG00000183018				58	0	0	26	13	33.3333
CDC27	0	genome.wustl.edu	37	17	45219283	45219283	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	45219283	45219283	T	C	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	missense	c.1505	p.Y502C	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897				187	0	0	108	32	22.8571
SNX11	0	genome.wustl.edu	37	17	46189966	46189966	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	46189966	46189966	C	T	SNP	SNX11	ENST00000359238	human	ensembl	74_37	+1	known	nonsense	c.73	p.R25*	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX11	HGNC	ENSG00000002919				255	0	0	121	76	38.5787
HOXB3	0	genome.wustl.edu	37	17	46629702	46629702	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	46629702	46629702	G	A	SNP	HOXB3	ENST00000311626	human	ensembl	74_37	-1	known	silent	c.135	p.G45	0.232	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093				56	0	0	42	25	37.3134
HOXB9	0	genome.wustl.edu	37	17	46703540	46703540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	46703540	46703540	C	T	SNP	HOXB9	ENST00000311177	human	ensembl	74_37	-1	known	missense	c.92	p.G31D	1.000	pfam_Hox9_activation_N,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Hox9,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXB9	HGNC	ENSG00000170689				17	0	0	13	14	51.8519
TTLL6	0	genome.wustl.edu	37	17	46862565	46862565	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	46862565	46862565	T	C	SNP	TTLL6	ENST00000393382	human	ensembl	74_37	-1	known	splice_site	c.1762-2	e13-2	0.956	-	-	-	no_errors	TTLL6	HGNC	ENSG00000170703				101	0	0	58	8	12.1212
MINK1	0	genome.wustl.edu	37	17	4789868	4789868	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	4789868	4789868	G	A	SNP	MINK1	ENST00000355280	human	ensembl	74_37	+1	known	missense	c.896	p.R299H	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MINK1	HGNC	ENSG00000141503				101	0	0	53	39	42.3913
COL1A1	0	genome.wustl.edu	37	17	48269838	48269838	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	48269838	48269838	G	T	SNP	COL1A1	ENST00000225964	human	ensembl	74_37	-1	known	missense	c.1981	p.Q661K	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821				20	0	0	13	6	31.5789
EME1	0	genome.wustl.edu	37	17	48458214	48458214	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	48458214	48458214	C	T	SNP	EME1	ENST00000393271	human	ensembl	74_37	+1	known	missense	c.1666	p.R556C	0.998	NULL	pfam_ERCC4_domain,smart_ERCC4_domain	-	no_errors	EME1	HGNC	ENSG00000154920				148	0	0	85	23	21.2963
CACNA1G	0	genome.wustl.edu	37	17	48692727	48692727	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	48692727	48692727	C	A	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.4765	p.Q1589K	1.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				50	0	0	25	23	47.9167
ABCC3	0	genome.wustl.edu	37	17	48753397	48753397	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	48753397	48753397	C	T	SNP	ABCC3	ENST00000285238	human	ensembl	74_37	+1	known	nonsense	c.3013	p.Q1005*	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846				57	0	0	41	29	41.4286
NME1-NME2	0	genome.wustl.edu	37	17	49247383	49247383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	49247383	49247383	G	A	SNP	NME1-NME2	ENST00000608447	human	ensembl	74_37	+1	known	missense	c.734	p.R245H	1.000	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME1-NME2	HGNC	ENSG00000243678				53	0	0	37	12	24.4898
UTP18	0	genome.wustl.edu	37	17	49346265	49346265	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	49346265	49346265	G	T	SNP	UTP18	ENST00000225298	human	ensembl	74_37	+1	known	missense	c.622	p.D208Y	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	UTP18	HGNC	ENSG00000011260				48	0	0	23	2	8
ZNF232	0	genome.wustl.edu	37	17	5009276	5009276	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	5009276	5009276	C	A	SNP	ZNF232	ENST00000250076	human	ensembl	74_37	-1	known	missense	c.1178	p.G393V	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF232	HGNC	ENSG00000167840				87	0	0	22	21	48.8372
KIF2B	0	genome.wustl.edu	37	17	51901613	51901613	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	51901613	51901613	G	T	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.1219	p.G407W	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				63	0	0	57	18	24
NOG	0	genome.wustl.edu	37	17	54672213	54672213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	54672213	54672213	G	A	SNP	NOG	ENST00000332822	human	ensembl	74_37	+1	known	missense	c.629	p.R210H	1.000	pfam_Noggin,pirsf_Noggin	pfam_Noggin,pirsf_Noggin	-	no_errors	NOG	HGNC	ENSG00000183691				22	0	0	12	9	42.8571
COIL	0	genome.wustl.edu	37	17	55019424	55019424	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	55019424	55019424	A	G	SNP	COIL	ENST00000240316	human	ensembl	74_37	-1	known	missense	c.1619	p.V540A	1.000	NULL	NULL	-	no_errors	COIL	HGNC	ENSG00000121058				93	0	0	75	10	11.7647
AKAP1	0	genome.wustl.edu	37	17	55183827	55183827	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	55183827	55183827	T	C	SNP	AKAP1	ENST00000337714	human	ensembl	74_37	+1	known	silent	c.1002	p.N334	0.036	NULL	pfam_Tudor,pfam_KH_dom_type_1,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	AKAP1	HGNC	ENSG00000121057				157	1	0.632911	94	54	36.4865
MSI2	0	genome.wustl.edu	37	17	55478773	55478773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	55478773	55478773	G	A	SNP	MSI2	ENST00000284073	human	ensembl	74_37	+1	known	missense	c.346	p.G116R	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI2	HGNC	ENSG00000153944				138	0	0	67	25	27.1739
EPX	0	genome.wustl.edu	37	17	56274428	56274428	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	56274428	56274428	C	T	SNP	EPX	ENST00000225371	human	ensembl	74_37	+1	known	silent	c.930	p.D310	0.979	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053				213	0	0	117	78	40
RNF43	0	genome.wustl.edu	37	17	56435590	56435590	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	56435590	56435590	T	C	SNP	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	missense	c.1547	p.D516G	0.040	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				131	0	0	123	10	7.5188
PPM1E	0	genome.wustl.edu	37	17	57057445	57057445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	57057445	57057445	G	A	SNP	PPM1E	ENST00000308249	human	ensembl	74_37	+1	known	missense	c.1321	p.V441M	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1E	HGNC	ENSG00000175175				63	0	0	33	4	10.8108
TRIM37	0	genome.wustl.edu	37	17	57093008	57093008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	57093008	57093008	G	A	SNP	TRIM37	ENST00000262294	human	ensembl	74_37	-1	known	missense	c.2539	p.P847S	0.839	NULL	pfam_Znf_B-box,pfam_MATH,superfamily_TRAF-like,smart_Znf_B-box,smart_Bbox_C,smart_MATH,pfscan_MATH,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM37	HGNC	ENSG00000108395				188	0	0	96	54	36
DHX40	0	genome.wustl.edu	37	17	57654702	57654702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	57654702	57654702	C	T	SNP	DHX40	ENST00000251241	human	ensembl	74_37	+1	known	missense	c.1049	p.T350M	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX40	HGNC	ENSG00000108406				62	0	0	22	10	31.25
TBC1D3P1-DHX40P1	0	genome.wustl.edu	37	17	58085999	58085999	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	58085999	58085999	G	A	SNP	TBC1D3P1-DHX40P1	ENST00000407042	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	TBC1D3P1-DHX40P1	HGNC	ENSG00000267104				24	0	0	21	10	32.2581
HEATR6	0	genome.wustl.edu	37	17	58121401	58121401	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	58121401	58121401	G	T	SNP	HEATR6	ENST00000184956	human	ensembl	74_37	-1	known	silent	c.3069	p.A1023	0.999	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097				148	0	0	84	40	32.2581
HEATR6	0	genome.wustl.edu	37	17	58147144	58147144	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	58147144	58147144	C	T	SNP	HEATR6	ENST00000184956	human	ensembl	74_37	-1	known	silent	c.867	p.P289	0.627	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097				128	0	0	54	24	30.7692
INTS2	0	genome.wustl.edu	37	17	59967232	59967232	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	59967232	59967232	C	T	SNP	INTS2	ENST00000444766	human	ensembl	74_37	-1	known	silent	c.1923	p.Q641	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506				32	0	0	5	9	64.2857
MRC2	0	genome.wustl.edu	37	17	60753167	60753167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	60753167	60753167	G	A	SNP	MRC2	ENST00000303375	human	ensembl	74_37	+1	known	missense	c.1586	p.S529N	1.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC2	HGNC	ENSG00000011028				171	0	0	77	44	36.3636
KCNH6	0	genome.wustl.edu	37	17	61607783	61607783	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	61607783	61607783	G	A	SNP	KCNH6	ENST00000583023	human	ensembl	74_37	+1	known	silent	c.555	p.T185	0.008	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826				130	0	0	104	7	6.30631
MAP3K3	0	genome.wustl.edu	37	17	61766937	61766937	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	61766937	61766937	A	G	SNP	MAP3K3	ENST00000361357	human	ensembl	74_37	+1	known	missense	c.998	p.Q333R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K3	HGNC	ENSG00000198909				19	0	0	19	12	38.7097
PSMC5	0	genome.wustl.edu	37	17	61908745	61908745	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	61908745	61908745	G	A	SNP	PSMC5	ENST00000310144	human	ensembl	74_37	+1	known	missense	c.929	p.R310H	0.998	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC5	HGNC	ENSG00000087191				260	0	0	156	99	38.8235
LOC146880	0	genome.wustl.edu	37	17	62746718	62746718	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	62746718	62746718	C	T	SNP	LOC146880	ENST00000400873	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	hsa-mir-6080	miRBase	ENSG00000215769				48	0	0	30	18	37.5
PLEKHM1P	0	genome.wustl.edu	37	17	62818372	62818372	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	62818372	62818372	G	A	SNP	PLEKHM1P	ENST00000397718	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	PLEKHM1P	HGNC	ENSG00000214176				51	0	0	34	28	45.1613
FAM64A	0	genome.wustl.edu	37	17	6350849	6350849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	6350849	6350849	C	T	SNP	FAM64A	ENST00000250056	human	ensembl	74_37	+1	known	missense	c.361	p.R121W	0.998	pfam_DUF1466	pfam_DUF1466	-	no_errors	FAM64A	HGNC	ENSG00000129195				125	0	0	79	42	34.7107
APOH	0	genome.wustl.edu	37	17	64219843	64219843	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	64219843	64219843	A	G	SNP	APOH	ENST00000205948	human	ensembl	74_37	-1	known	missense	c.388	p.W130R	0.991	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Sushi_2,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	APOH	HGNC	ENSG00000091583				97	0	0	58	32	35.5556
APOH	0	genome.wustl.edu	37	17	64224206	64224206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	64224206	64224206	C	T	SNP	APOH	ENST00000205948	human	ensembl	74_37	-1	known	missense	c.173	p.R58Q	0.066	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Sushi_2,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	APOH	HGNC	ENSG00000091583				134	0	0	48	53	52.4752
KIAA0753	0	genome.wustl.edu	37	17	6493207	6493207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	6493207	6493207	G	A	SNP	KIAA0753	ENST00000361413	human	ensembl	74_37	-1	known	missense	c.2678	p.P893L	0.000	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920				88	0	0	53	14	20.8955
ENSG00000215067	0	genome.wustl.edu	37	17	6913203	6913203	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	6913203	6913203	G	T	SNP	ENSG00000215067	ENST00000570562	human	ensembl	74_37	-1	known	silent	c.9	p.T3	0.003	NULL	NULL	-	no_errors	AC027763.2	Clone_based_vega_gene	ENSG00000215067				84	0	0	38	15	28.3019
SLC2A4	0	genome.wustl.edu	37	17	7187346	7187346	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7187346	7187346	C	A	SNP	SLC2A4	ENST00000317370	human	ensembl	74_37	+1	known	missense	c.502	p.L168M	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_4,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A4	HGNC	ENSG00000181856				17	0	0	20	4	16.6667
NEURL4	0	genome.wustl.edu	37	17	7227487	7227487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7227487	7227487	C	T	SNP	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	missense	c.2002	p.V668I	0.995	superfamily_ConA-like_lec_gl_sf,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041				133	0	0	152	15	8.98204
DNAI2	0	genome.wustl.edu	37	17	72308361	72308361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	72308361	72308361	C	T	SNP	DNAI2	ENST00000311014	human	ensembl	74_37	+1	known	missense	c.1714	p.P572S	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI2	HGNC	ENSG00000171595				18	0	0	11	4	26.6667
KIF19	0	genome.wustl.edu	37	17	72351078	72351078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	72351078	72351078	C	T	SNP	KIF19	ENST00000389916	human	ensembl	74_37	+1	known	missense	c.2864	p.T955M	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169				9	0	0	6	5	45.4545
GPRC5C	0	genome.wustl.edu	37	17	72443194	72443194	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	72443194	72443194	G	A	SNP	GPRC5C	ENST00000582873	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPRC5C	HGNC	ENSG00000170412				65	0	0	31	22	41.5094
GRIN2C	0	genome.wustl.edu	37	17	72848528	72848528	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	72848528	72848528	G	T	SNP	GRIN2C	ENST00000293190	human	ensembl	74_37	-1	known	missense	c.622	p.P208T	0.005	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,pfam_NMDAR2_C,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2C	HGNC	ENSG00000161509				8	0	0	6	4	40
FDXR	0	genome.wustl.edu	37	17	72861876	72861876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	72861876	72861876	C	T	SNP	FDXR	ENST00000581530	human	ensembl	74_37	-1	known	missense	c.574	p.A192T	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	FDXR	HGNC	ENSG00000161513				20	0	0	19	11	36.6667
OTOP2	0	genome.wustl.edu	37	17	72927105	72927105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	72927105	72927105	G	A	SNP	OTOP2	ENST00000331427	human	ensembl	74_37	+1	known	missense	c.1375	p.A459T	0.000	NULL	pfam_Otopetrin	-	no_errors	OTOP2	HGNC	ENSG00000183034				111	0	0	79	47	37.3016
HID1	0	genome.wustl.edu	37	17	72956280	72956280	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	72956280	72956280	G	A	SNP	HID1	ENST00000425042	human	ensembl	74_37	-1	known	silent	c.792	p.Y264	1.000	NULL	pfam_Dymeclin	-	no_errors	HID1	HGNC	ENSG00000167861				50	0	0	29	22	43.1373
KIAA0195	0	genome.wustl.edu	37	17	73494345	73494345	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	73494345	73494345	C	A	SNP	KIAA0195	ENST00000314256	human	ensembl	74_37	+1	known	missense	c.3579	p.S1193R	0.210	pfam_ATPase_P-typ_cation-transptr_C	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728				83	0	0	36	26	41.9355
ITGB4	0	genome.wustl.edu	37	17	73729676	73729676	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	73729676	73729676	C	T	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	silent	c.1560	p.C520	0.884	pirsf_Integrin_bsu-4,prints_Integrin_bsu	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				74	0	0	73	12	14.1176
ITGB4	0	genome.wustl.edu	37	17	73736063	73736063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	73736063	73736063	G	A	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	missense	c.2357	p.G786D	0.999	pirsf_Integrin_bsu-4	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470				66	0	0	33	25	43.1034
SLC35G6	0	genome.wustl.edu	37	17	7386029	7386029	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7386029	7386029	G	A	SNP	SLC35G6	ENST00000412468	human	ensembl	74_37	+1	known	silent	c.726	p.Q242	1.000	pfam_DMT	pfam_DMT	-	no_errors	SLC35G6	HGNC	ENSG00000259224				128	0	0	105	10	8.69565
POLR2A	0	genome.wustl.edu	37	17	7399666	7399666	+	Splice_Site	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7399666	7399666	G	A	SNP	POLR2A	ENST00000322644	human	ensembl	74_37	+1	known	splice_site	c.363+1	e3+1	1.000	-	-	-	no_errors	POLR2A	HGNC	ENSG00000181222				203	0	0	131	52	28.4153
EVPL	0	genome.wustl.edu	37	17	74018608	74018608	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	74018608	74018608	G	A	SNP	EVPL	ENST00000301607	human	ensembl	74_37	-1	known	silent	c.492	p.C164	0.000	NULL	pfam_Plectin_repeat,superfamily_Ferritin-like_SF,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	EVPL	HGNC	ENSG00000167880				17	0	0	11	7	38.8889
GALR2	0	genome.wustl.edu	37	17	74073369	74073369	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	74073369	74073369	G	A	SNP	GALR2	ENST00000329003	human	ensembl	74_37	+1	known	missense	c.1021	p.D341N	0.844	prints_GAL2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_GAL2_rcpt	-	no_errors	GALR2	HGNC	ENSG00000182687				12	0	0	8	3	27.2727
ZACN	0	genome.wustl.edu	37	17	74077646	74077646	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	74077646	74077646	G	A	SNP	ZACN	ENST00000334586	human	ensembl	74_37	+1	known	silent	c.690	p.A230	0.000	superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM	-	no_errors	ZACN	HGNC	ENSG00000186919				212	0	0	113	61	35.0575
SPHK1	0	genome.wustl.edu	37	17	74383602	74383602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	74383602	74383602	G	A	SNP	SPHK1	ENST00000323374	human	ensembl	74_37	+1	known	missense	c.1348	p.G450S	0.169	NULL	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK1	HGNC	ENSG00000176170				68	0	0	47	14	22.9508
SENP3	0	genome.wustl.edu	37	17	7468815	7468815	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7468815	7468815	G	A	SNP	SENP3	ENST00000429205	human	ensembl	74_37	+1	known	missense	c.1126	p.V376M	1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP3	HGNC	ENSG00000161956				30	0	0	17	23	57.5
MPDU1	0	genome.wustl.edu	37	17	7487289	7487289	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7487289	7487289	T	C	SNP	MPDU1	ENST00000582151	human	ensembl	74_37	+1	putative	missense	c.109	p.F37L	0.500	NULL	NULL	-	no_errors	MPDU1	HGNC	ENSG00000129255				142	0	0	76	50	39.6825
TP53	0	genome.wustl.edu	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7577539	7577539	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.742	p.R248W	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				77	0	0	49	18	26.8657
WRAP53	0	genome.wustl.edu	37	17	7605096	7605096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7605096	7605096	G	A	SNP	WRAP53	ENST00000316024	human	ensembl	74_37	+1	known	missense	c.944	p.R315Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499				35	0	0	19	15	44.1176
TMC8	0	genome.wustl.edu	37	17	76137109	76137109	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	76137109	76137109	G	A	SNP	TMC8	ENST00000318430	human	ensembl	74_37	+1	known	silent	c.2097	p.A699	0.000	NULL	pfam_TMC	-	no_errors	TMC8	HGNC	ENSG00000167895				16	0	0	10	11	52.381
AFMID	0	genome.wustl.edu	37	17	76200813	76200813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	76200813	76200813	G	A	SNP	AFMID	ENST00000327898	human	ensembl	74_37	+1	known	missense	c.385	p.A129T	0.997	pfam_AB_hydrolase_3	pfam_AB_hydrolase_3	-	no_errors	AFMID	HGNC	ENSG00000183077				64	0	0	34	23	40.3509
DNAH17	0	genome.wustl.edu	37	17	76430214	76430214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	76430214	76430214	G	A	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	missense	c.12103	p.R4035C	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				132	0	0	89	56	38.6207
CYTH1	0	genome.wustl.edu	37	17	76677079	76677079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	76677079	76677079	G	A	SNP	CYTH1	ENST00000361101	human	ensembl	74_37	-1	known	missense	c.937	p.R313W	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH1	HGNC	ENSG00000108669				173	0	0	101	14	12.1739
CYTH1	0	genome.wustl.edu	37	17	76704344	76704344	+	Splice_Site	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	76704344	76704344	C	A	SNP	CYTH1	ENST00000361101	human	ensembl	74_37	-1	known	splice_site	c.106-1	e3-1	1.000	-	-	-	no_errors	CYTH1	HGNC	ENSG00000108669				57	0	0	38	7	15.5556
DNAH2	0	genome.wustl.edu	37	17	7690337	7690337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7690337	7690337	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.6589	p.A2197T	0.471	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				49	0	0	27	20	42.5532
KDM6B	0	genome.wustl.edu	37	17	7749539	7749539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7749539	7749539	C	T	SNP	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	missense	c.380	p.T127I	0.045	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510				34	0	0	26	19	42.2222
TBC1D16	0	genome.wustl.edu	37	17	77987325	77987325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	77987325	77987325	G	A	SNP	TBC1D16	ENST00000310924	human	ensembl	74_37	-1	known	missense	c.22	p.R8C	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D16	HGNC	ENSG00000167291				10	0	0	8	5	38.4615
CCDC40	0	genome.wustl.edu	37	17	78011979	78011979	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	78011979	78011979	C	T	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	silent	c.87	p.S29	0.001	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				47	0	0	11	15	57.6923
CCDC40	0	genome.wustl.edu	37	17	78024074	78024074	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	78024074	78024074	G	A	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.1151	p.R384H	0.934	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				8	0	0	7	7	50
CHD3	0	genome.wustl.edu	37	17	7802494	7802494	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7802494	7802494	G	A	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.2317	p.V773I	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				156	0	0	130	9	6.47482
SLC26A11	0	genome.wustl.edu	37	17	78226455	78226455	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	78226455	78226455	G	T	SNP	SLC26A11	ENST00000361193	human	ensembl	74_37	+1	known	missense	c.1761	p.Q587H	0.959	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A11	HGNC	ENSG00000181045				90	0	0	60	6	9.09091
RNF213	0	genome.wustl.edu	37	17	78293236	78293236	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	78293236	78293236	T	C	SNP	RNF213	ENST00000319921	human	ensembl	74_37	+1	known	missense	c.3148	p.W1050R	0.000	NULL	NULL	-	no_errors	RNF213	HGNC	ENSG00000173821				116	0	0	63	30	32.2581
RNF213	0	genome.wustl.edu	37	17	78337430	78337430	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	78337430	78337430	A	G	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.11590	p.M3864V	0.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				44	0	0	17	14	45.1613
TRAPPC1	0	genome.wustl.edu	37	17	7834329	7834329	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7834329	7834329	C	T	SNP	TRAPPC1	ENST00000303731	human	ensembl	74_37	-1	known	silent	c.309	p.A103	1.000	pfam_Sybindin,superfamily_Longin-like_dom	pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC1	HGNC	ENSG00000170043				98	0	0	40	33	45.2055
CNTROB	0	genome.wustl.edu	37	17	7847812	7847812	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7847812	7847812	G	A	SNP	CNTROB	ENST00000380262	human	ensembl	74_37	+1	known	silent	c.1590	p.A530	0.072	NULL	NULL	-	no_errors	CNTROB	HGNC	ENSG00000170037				45	0	0	23	19	45.2381
CNTROB	0	genome.wustl.edu	37	17	7850958	7850958	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7850958	7850958	A	G	SNP	CNTROB	ENST00000380262	human	ensembl	74_37	+1	known	missense	c.2063	p.D688G	0.964	NULL	NULL	-	no_errors	CNTROB	HGNC	ENSG00000170037				203	0	0	164	20	10.8696
AZI1	0	genome.wustl.edu	37	17	79166624	79166624	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	79166624	79166624	G	A	SNP	AZI1	ENST00000269392	human	ensembl	74_37	-1	known	nonsense	c.2350	p.Q784*	1.000	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577				32	0	0	19	13	40.625
ENTHD2	0	genome.wustl.edu	37	17	79202746	79202746	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	79202746	79202746	G	A	SNP	ENTHD2	ENST00000300714	human	ensembl	74_37	-1	known	silent	c.1560	p.F520	0.803	NULL	pfam_Epsin_dom_N,superfamily_ENTH_VHS	-	no_errors	ENTHD2	HGNC	ENSG00000167302				48	0	0	34	11	24.4444
ENTHD2	0	genome.wustl.edu	37	17	79207478	79207478	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	79207478	79207478	C	T	SNP	ENTHD2	ENST00000300714	human	ensembl	74_37	-1	known	silent	c.414	p.P138	0.000	NULL	pfam_Epsin_dom_N,superfamily_ENTH_VHS	-	no_errors	ENTHD2	HGNC	ENSG00000167302				17	0	0	13	6	31.5789
PPP1R27	0	genome.wustl.edu	37	17	79792733	79792733	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	79792733	79792733	G	T	SNP	PPP1R27	ENST00000330261	human	ensembl	74_37	-1	known	missense	c.97	p.L33M	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R27	HGNC	ENSG00000182676				46	0	0	26	21	44.6809
FASN	0	genome.wustl.edu	37	17	80044984	80044984	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	80044984	80044984	C	A	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	silent	c.3369	p.T1123	0.803	NULL	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				27	0	0	28	10	26.3158
SLC16A3	0	genome.wustl.edu	37	17	80195293	80195293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	80195293	80195293	G	A	SNP	SLC16A3	ENST00000392339	human	ensembl	74_37	+1	known	missense	c.647	p.R216H	0.159	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A3	HGNC	ENSG00000141526				9	0	0	9	4	30.7692
FOXK2	0	genome.wustl.edu	37	17	80543922	80543922	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	80543922	80543922	C	T	SNP	FOXK2	ENST00000335255	human	ensembl	74_37	+1	known	silent	c.1422	p.V474	0.986	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXK2	HGNC	ENSG00000141568				58	0	0	41	15	26.7857
SLC25A35	0	genome.wustl.edu	37	17	8195898	8195898	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	8195898	8195898	T	C	SNP	SLC25A35	ENST00000577745	human	ensembl	74_37	-1	known	silent	c.384	p.T128	0.994	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A35	HGNC	ENSG00000125434				127	0	0	80	52	39.3939
MYH10	0	genome.wustl.edu	37	17	8445466	8445466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	8445466	8445466	C	T	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.1534	p.G512R	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				89	0	0	70	7	9.09091
MYH10	0	genome.wustl.edu	37	17	8449960	8449960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	8449960	8449960	G	A	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.1150	p.L384F	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				70	0	0	40	9	18.3673
STX8	0	genome.wustl.edu	37	17	9408353	9408353	+	Splice_Site	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	9408353	9408353	A	G	SNP	STX8	ENST00000306357	human	ensembl	74_37	-1	known	splice_site	c.448+2	e5+2	1.000	-	-	-	no_errors	STX8	HGNC	ENSG00000170310				125	0	0	91	9	9
IMPA2	0	genome.wustl.edu	37	18	12014330	12014330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	12014330	12014330	G	A	SNP	IMPA2	ENST00000269159	human	ensembl	74_37	+1	known	missense	c.448	p.A150T	0.994	pfam_Inositol_monophosphatase,prints_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen	pfam_Inositol_monophosphatase,prints_Inositol_monophosphatase,prints_Inositol_monoPase_Li-sen	-	no_errors	IMPA2	HGNC	ENSG00000141401				32	0	0	11	7	38.8889
CEP192	0	genome.wustl.edu	37	18	13068413	13068413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	13068413	13068413	G	A	SNP	CEP192	ENST00000506447	human	ensembl	74_37	+1	known	missense	c.4814	p.S1605N	0.027	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639				61	0	0	25	12	32.4324
FAM210A	0	genome.wustl.edu	37	18	13682035	13682035	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	13682035	13682035	G	A	SNP	FAM210A	ENST00000322247	human	ensembl	74_37	-1	known	silent	c.42	p.R14	0.463	NULL	pfam_DUF1279	-	no_errors	FAM210A	HGNC	ENSG00000177150				146	0	0	68	40	37.037
MC2R	0	genome.wustl.edu	37	18	13884978	13884978	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	13884978	13884978	C	T	SNP	MC2R	ENST00000327606	human	ensembl	74_37	-1	known	silent	c.540	p.S180	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ACTH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn	-	no_errors	MC2R	HGNC	ENSG00000185231				103	0	0	61	42	40.7767
ROCK1	0	genome.wustl.edu	37	18	18547719	18547719	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	18547719	18547719	C	T	SNP	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	missense	c.3186	p.M1062I	1.000	pirsf_Rho-assoc_coiled-coil_kin	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd_dom,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900				245	0	0	148	16	9.7561
ROCK1	0	genome.wustl.edu	37	18	18564319	18564319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	18564319	18564319	G	A	SNP	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	missense	c.2482	p.L828F	1.000	pirsf_Rho-assoc_coiled-coil_kin	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd_dom,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900				47	0	0	24	14	36.8421
ROCK1	0	genome.wustl.edu	37	18	18619444	18619444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	18619444	18619444	G	A	SNP	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	missense	c.1040	p.T347M	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Rho-assoc_coiled-coil_kin	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd_dom,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900				48	0	0	27	10	27.027
ANKRD29	0	genome.wustl.edu	37	18	21218839	21218839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	21218839	21218839	C	T	SNP	ANKRD29	ENST00000592179	human	ensembl	74_37	-1	known	missense	c.304	p.G102R	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD29	HGNC	ENSG00000154065				72	0	0	45	7	13.4615
OSBPL1A	0	genome.wustl.edu	37	18	21761173	21761173	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	21761173	21761173	T	C	SNP	OSBPL1A	ENST00000319481	human	ensembl	74_37	-1	known	missense	c.1748	p.Y583C	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447				35	0	0	21	10	32.2581
IMPACT	0	genome.wustl.edu	37	18	22007894	22007894	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	22007894	22007894	T	C	SNP	IMPACT	ENST00000284202	human	ensembl	74_37	+1	known	silent	c.48	p.I16	1.000	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	pfam_Impact_N,pfam_RWD-domain,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,pfscan_RWD-domain	-	no_errors	IMPACT	HGNC	ENSG00000154059				152	0	0	86	5	5.49451
DSG1	0	genome.wustl.edu	37	18	28914054	28914054	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	28914054	28914054	G	A	SNP	DSG1	ENST00000257192	human	ensembl	74_37	+1	known	silent	c.894	p.E298	0.325	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmosomal_cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760				123	0	0	77	7	8.33333
DSG2	0	genome.wustl.edu	37	18	29122692	29122692	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	29122692	29122692	C	T	SNP	DSG2	ENST00000261590	human	ensembl	74_37	+1	known	silent	c.2211	p.G737	0.002	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG2	HGNC	ENSG00000046604				144	0	0	91	25	21.5517
DSG2	0	genome.wustl.edu	37	18	29126573	29126573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	29126573	29126573	C	T	SNP	DSG2	ENST00000261590	human	ensembl	74_37	+1	known	missense	c.3224	p.T1075M	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG2	HGNC	ENSG00000046604				159	0	0	75	28	27.1845
RNF138	0	genome.wustl.edu	37	18	29693731	29693731	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	29693731	29693731	T	C	SNP	RNF138	ENST00000261593	human	ensembl	74_37	+1	known	silent	c.300	p.H100	1.000	NULL	pfam_Znf_MIZ,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF138	HGNC	ENSG00000134758				46	0	0	22	5	18.5185
WBP11P1	0	genome.wustl.edu	37	18	30092740	30092740	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	30092740	30092740	A	G	SNP	WBP11P1	ENST00000567636	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.988	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389				48	0	0	32	8	20
KLHL14	0	genome.wustl.edu	37	18	30260437	30260437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	30260437	30260437	G	A	SNP	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	missense	c.1364	p.S455F	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				154	0	0	83	22	20.9524
MYL12B	0	genome.wustl.edu	37	18	3277796	3277796	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	3277796	3277796	T	C	SNP	MYL12B	ENST00000237500	human	ensembl	74_37	+1	known	missense	c.380	p.L127P	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL12B	HGNC	ENSG00000118680				54	0	0	19	14	42.4242
RPRD1A	0	genome.wustl.edu	37	18	33613688	33613688	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	33613688	33613688	A	G	SNP	RPRD1A	ENST00000357384	human	ensembl	74_37	-1	known	silent	c.264	p.A88	0.998	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	RPRD1A	HGNC	ENSG00000141425				69	0	0	50	6	10.7143
MOCOS	0	genome.wustl.edu	37	18	33785130	33785130	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	33785130	33785130	C	A	SNP	MOCOS	ENST00000261326	human	ensembl	74_37	+1	known	missense	c.1109	p.P370H	0.327	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643				103	0	0	92	13	12.381
FHOD3	0	genome.wustl.edu	37	18	34349257	34349257	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	34349257	34349257	G	A	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.4105	p.D1369N	0.998	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				108	0	0	51	36	41.3793
CELF4	0	genome.wustl.edu	37	18	34853000	34853000	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	34853000	34853000	C	T	SNP	CELF4	ENST00000420428	human	ensembl	74_37	-1	known	missense	c.928	p.A310T	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489				60	0	0	46	31	40.2597
SLC14A1	0	genome.wustl.edu	37	18	43311062	43311062	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	43311062	43311062	A	G	SNP	SLC14A1	ENST00000415427	human	ensembl	74_37	+1	known	silent	c.402	p.G134	0.556	pfam_Urea_transporter	pfam_Urea_transporter	-	no_errors	SLC14A1	HGNC	ENSG00000141469				99	0	0	70	14	16.6667
ST8SIA5	0	genome.wustl.edu	37	18	44260339	44260339	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	44260339	44260339	T	C	SNP	ST8SIA5	ENST00000315087	human	ensembl	74_37	-1	known	missense	c.797	p.D266G	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA5	HGNC	ENSG00000101638				34	0	0	26	20	43.4783
LIPG	0	genome.wustl.edu	37	18	47110024	47110024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	47110024	47110024	C	T	SNP	LIPG	ENST00000261292	human	ensembl	74_37	+1	known	missense	c.1256	p.A419V	0.000	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase,prints_Lipo_Lipase,prints_Lipase_hep	-	no_errors	LIPG	HGNC	ENSG00000101670				115	0	0	42	33	44
MYO5B	0	genome.wustl.edu	37	18	47463722	47463722	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	47463722	47463722	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	74_37	-1	known	missense	c.1798	p.P600S	0.552	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306				95	0	0	36	29	44.6154
MBD1	0	genome.wustl.edu	37	18	47800112	47800112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	47800112	47800112	G	A	SNP	MBD1	ENST00000424334	human	ensembl	74_37	-1	known	missense	c.1421	p.P474L	0.000	NULL	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644				152	0	0	70	61	46.5649
CXXC1	0	genome.wustl.edu	37	18	47811498	47811498	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	47811498	47811498	C	T	SNP	CXXC1	ENST00000412036	human	ensembl	74_37	-1	known	silent	c.786	p.A262	0.004	NULL	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832				82	0	0	68	4	5.55556
ELAC1	0	genome.wustl.edu	37	18	48513066	48513066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	48513066	48513066	C	T	SNP	ELAC1	ENST00000269466	human	ensembl	74_37	+1	known	missense	c.703	p.P235S	1.000	tigrfam_RNase_Z	pfam_Beta-lactamas-like,tigrfam_RNase_Z	-	no_errors	ELAC1	HGNC	ENSG00000141642				88	0	0	37	13	26
SMAD4	0	genome.wustl.edu	37	18	48603108	48603108	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	48603108	48603108	C	A	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	missense	c.1409	p.P470H	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				62	0	0	38	14	26.9231
STARD6	0	genome.wustl.edu	37	18	51880423	51880423	+	Splice_Site	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	51880423	51880423	C	T	SNP	STARD6	ENST00000307844	human	ensembl	74_37	-1	known	splice_site	c.140+1	e2+1	1.000	-	-	-	no_errors	STARD6	HGNC	ENSG00000174448				87	0	0	29	6	17.1429
RAB27B	0	genome.wustl.edu	37	18	52556537	52556537	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	52556537	52556537	C	T	SNP	RAB27B	ENST00000262094	human	ensembl	74_37	+1	known	nonsense	c.550	p.R184*	1.000	superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB27B	HGNC	ENSG00000041353				77	0	0	42	4	8.69565
EPB41L3	0	genome.wustl.edu	37	18	5489033	5489033	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	5489033	5489033	G	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	silent	c.150	p.A50	0.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				31	0	0	26	21	44.6809
ST8SIA3	0	genome.wustl.edu	37	18	55020105	55020105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	55020105	55020105	G	A	SNP	ST8SIA3	ENST00000324000	human	ensembl	74_37	+1	known	missense	c.28	p.A10T	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA3	HGNC	ENSG00000177511				56	0	0	33	3	8.33333
ALPK2	0	genome.wustl.edu	37	18	56203450	56203450	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	56203450	56203450	T	C	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	silent	c.3969	p.V1323	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				112	1	0.884956	42	33	44
ALPK2	0	genome.wustl.edu	37	18	56204901	56204901	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	56204901	56204901	T	C	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	missense	c.2518	p.T840A	0.107	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				74	0	0	21	20	48.7805
GRP	0	genome.wustl.edu	37	18	56892894	56892894	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	56892894	56892894	C	A	SNP	GRP	ENST00000256857	human	ensembl	74_37	+1	known	missense	c.310	p.L104M	0.075	NULL	pfam_Bombesin	-	no_errors	GRP	HGNC	ENSG00000134443				156	0	0	72	58	44.6154
GRP	0	genome.wustl.edu	37	18	56892898	56892898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	56892898	56892898	G	A	SNP	GRP	ENST00000256857	human	ensembl	74_37	+1	known	missense	c.314	p.G105D	0.057	NULL	pfam_Bombesin	-	no_errors	GRP	HGNC	ENSG00000134443				155	0	0	106	24	18.4615
CPLX4	0	genome.wustl.edu	37	18	56964004	56964004	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	56964004	56964004	T	C	SNP	CPLX4	ENST00000299721	human	ensembl	74_37	-1	known	missense	c.409	p.T137A	0.917	pfam_Synaphin	pfam_Synaphin	-	no_errors	CPLX4	HGNC	ENSG00000166569				36	0	0	18	12	40
CETN1	0	genome.wustl.edu	37	18	580690	580690	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	580690	580690	G	A	SNP	CETN1	ENST00000327228	human	ensembl	74_37	+1	known	silent	c.282	p.T94	0.022	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN1	HGNC	ENSG00000177143				65	0	0	45	25	35.7143
CDH20	0	genome.wustl.edu	37	18	59206373	59206373	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	59206373	59206373	G	T	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	nonsense	c.1525	p.G509*	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				204	0	0	60	35	36.8421
BCL2	0	genome.wustl.edu	37	18	60985558	60985558	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	60985558	60985558	C	A	SNP	BCL2	ENST00000333681	human	ensembl	74_37	-1	known	missense	c.342	p.E114D	1.000	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Apop_reg_BclX,tigrfam_Bcl2/BclX	pfam_Blc2_fam,pfam_Bcl2_BH4,smart_Bcl2_BH4,pfscan_Bcl2-like,pfscan_Bcl2_BH4,prints_Apop_reg_Bcl2,prints_Blc2_fam,prints_Apop_reg_BclX,tigrfam_Bcl2/BclX	-	no_errors	BCL2	HGNC	ENSG00000171791				77	0	0	85	10	10.5263
SERPINB11	0	genome.wustl.edu	37	18	61390517	61390517	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	61390517	61390517	G	A	SNP	SERPINB11	ENST00000536691	human	ensembl	74_37	+1	known	missense	c.538	p.A180T	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB11	HGNC	ENSG00000206072				74	0	0	50	28	35.8974
LAMA1	0	genome.wustl.edu	37	18	6995425	6995425	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	6995425	6995425	A	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.4827	p.N1609K	0.002	pfam_Laminin_I	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				65	0	0	25	16	39.0244
LAMA1	0	genome.wustl.edu	37	18	7037643	7037643	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	7037643	7037643	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.1671	p.T557	0.001	pfscan_Laminin_B_type_IV	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				107	0	0	52	26	33.3333
ZNF516	0	genome.wustl.edu	37	18	74091570	74091570	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	74091570	74091570	G	A	SNP	ZNF516	ENST00000443185	human	ensembl	74_37	-1	known	missense	c.2500	p.R834W	0.005	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493				136	0	0	58	27	31.7647
ZNF236	0	genome.wustl.edu	37	18	74592217	74592217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	74592217	74592217	C	T	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.1127	p.P376L	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				48	0	0	27	16	37.2093
ZNF236	0	genome.wustl.edu	37	18	74639294	74639294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	74639294	74639294	C	T	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.4229	p.T1410M	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				124	0	0	80	9	10.1124
ZNF236	0	genome.wustl.edu	37	18	74668077	74668077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	74668077	74668077	G	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.5045	p.R1682Q	0.677	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				8	0	0	3	4	57.1429
SALL3	0	genome.wustl.edu	37	18	76754387	76754387	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	76754387	76754387	A	G	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.2396	p.D799G	0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				44	0	0	28	18	39.1304
SALL3	0	genome.wustl.edu	37	18	76757282	76757282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	76757282	76757282	C	T	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.3863	p.T1288M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				218	0	0	121	85	41.2621
KCNG2	0	genome.wustl.edu	37	18	77623816	77623816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	77623816	77623816	G	A	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	missense	c.149	p.R50H	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				8	0	0	11	9	45
KCNG2	0	genome.wustl.edu	37	18	77623926	77623926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	77623926	77623926	G	A	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	missense	c.259	p.A87T	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				19	0	0	13	7	35
KCNG2	0	genome.wustl.edu	37	18	77659196	77659196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	77659196	77659196	C	T	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	missense	c.781	p.P261S	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				42	0	0	32	8	20
KCNG2	0	genome.wustl.edu	37	18	77659756	77659756	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	77659756	77659756	C	T	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	silent	c.1341	p.P447	0.001	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				22	0	0	16	8	33.3333
RBFA	0	genome.wustl.edu	37	18	77804249	77804249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	77804249	77804249	G	A	SNP	RBFA	ENST00000306735	human	ensembl	74_37	+1	known	missense	c.614	p.R205Q	0.000	NULL	pfam_Ribosome-bd_facA,superfamily_Ribosome-bd_facA_dom	-	no_errors	RBFA	HGNC	ENSG00000101546				134	0	0	65	31	32.2917
PARD6G	0	genome.wustl.edu	37	18	77960807	77960807	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	77960807	77960807	C	T	SNP	PARD6G	ENST00000353265	human	ensembl	74_37	-1	known	silent	c.81	p.A27	0.291	pfam_OPR_PB1,smart_OPR_PB1	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6G	HGNC	ENSG00000178184				41	0	0	12	10	45.4545
SOGA2	0	genome.wustl.edu	37	18	8825900	8825900	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	8825900	8825900	G	A	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	silent	c.4392	p.L1464	0.000	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				51	0	0	27	35	56.4516
PPP4R1	0	genome.wustl.edu	37	18	9583131	9583131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	9583131	9583131	C	T	SNP	PPP4R1	ENST00000400556	human	ensembl	74_37	-1	known	missense	c.902	p.S301N	1.000	pfam_HEAT,superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R1	HGNC	ENSG00000154845				73	0	0	36	19	34.5455
PPAN-P2RY11	0	genome.wustl.edu	37	19	10225287	10225287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	10225287	10225287	G	A	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	74_37	+1	known	missense	c.2258	p.R753Q	0.001	NULL	pfam_Brix,pfam_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207				69	0	0	65	5	7.14286
MRPL4	0	genome.wustl.edu	37	19	10367427	10367427	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	10367427	10367427	G	A	SNP	MRPL4	ENST00000253099	human	ensembl	74_37	+1	known	missense	c.371	p.G124D	1.000	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom,tigrfam_Ribosomal_L4/L1e_bac-type	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom,tigrfam_Ribosomal_L4/L1e_bac-type	-	no_errors	MRPL4	HGNC	ENSG00000105364				165	0	0	110	65	37.1429
HMHA1	0	genome.wustl.edu	37	19	1068656	1068656	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	1068656	1068656	G	A	SNP	HMHA1	ENST00000313093	human	ensembl	74_37	+1	known	missense	c.334	p.V112I	0.025	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448				73	0	0	57	28	32.9412
SLC44A2	0	genome.wustl.edu	37	19	10747092	10747092	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	10747092	10747092	C	T	SNP	SLC44A2	ENST00000335757	human	ensembl	74_37	+1	known	silent	c.1327	p.L443	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC	ENSG00000129353				125	0	0	121	14	10.3704
SMARCA4	0	genome.wustl.edu	37	19	11096942	11096942	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	11096942	11096942	A	T	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.433	p.M145L	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				52	0	0	37	20	35.0877
SMARCA4	0	genome.wustl.edu	37	19	11100064	11100064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	11100064	11100064	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	missense	c.1190	p.R397Q	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				111	0	0	83	40	32.5203
SMARCA4	0	genome.wustl.edu	37	19	11144499	11144499	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	11144499	11144499	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	silent	c.3831	p.P1277	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				37	0	0	17	20	54.0541
LDLR	0	genome.wustl.edu	37	19	11218190	11218190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	11218190	11218190	G	A	SNP	LDLR	ENST00000558518	human	ensembl	74_37	+1	known	missense	c.940	p.G314R	0.958	superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164				70	0	0	66	11	14.2857
LDLR	0	genome.wustl.edu	37	19	11241983	11241983	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	11241983	11241983	C	T	SNP	LDLR	ENST00000557933	human	ensembl	74_37	+1	novel	missense	c.2636	p.T879M	0.001	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LDLR	HGNC	ENSG00000130164				144	0	0	91	45	33.0882
KANK2	0	genome.wustl.edu	37	19	11280723	11280723	+	Splice_Site	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	11280723	11280723	C	T	SNP	KANK2	ENST00000432929	human	ensembl	74_37	-1	known	splice_site	c.2436+1	e9+1	1.000	-	-	-	no_errors	KANK2	HGNC	ENSG00000197256				110	0	0	87	47	35.0746
RGL3	0	genome.wustl.edu	37	19	11510959	11510959	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	11510959	11510959	C	T	SNP	RGL3	ENST00000393423	human	ensembl	74_37	-1	known	missense	c.1499	p.R500Q	0.998	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517				70	0	0	49	4	7.54717
PRKCSH	0	genome.wustl.edu	37	19	11548910	11548910	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	11548910	11548910	G	A	SNP	PRKCSH	ENST00000252455	human	ensembl	74_37	+1	known	silent	c.315	p.E105	0.999	superfamily_LDrepeatLR_classA_rpt	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_LDrepeatLR_classA_rpt,pfscan_EF_hand_dom	-	no_errors	PRKCSH	HGNC	ENSG00000130175				44	0	0	42	4	8.69565
ECSIT	0	genome.wustl.edu	37	19	11618361	11618361	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	11618361	11618361	G	A	SNP	ECSIT	ENST00000270517	human	ensembl	74_37	-1	known	missense	c.962	p.P321L	0.001	NULL	pfam_ECSIT	-	no_errors	ECSIT	HGNC	ENSG00000130159				70	0	0	46	32	41.0256
ZNF433	0	genome.wustl.edu	37	19	12128716	12128716	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	12128716	12128716	A	G	SNP	ZNF433	ENST00000344980	human	ensembl	74_37	-1	known	missense	c.175	p.Y59H	0.018	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF433	HGNC	ENSG00000197647				19	0	0	9	9	50
ATP5D	0	genome.wustl.edu	37	19	1241936	1241936	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	1241936	1241936	G	A	SNP	ATP5D	ENST00000215375	human	ensembl	74_37	+1	known	silent	c.87	p.P29	0.932	NULL	pfam_ATPase_F1-cplx_dsu/esu_N,superfamily_ATPase_F1-cplx_dsu/esu_N,superfamily_ATPase_F1_dsu/esu_C,tigrfam_ATPase_F1-cplx_dsu/esu	-	no_errors	ATP5D	HGNC	ENSG00000099624				32	0	0	29	5	14.7059
MAN2B1	0	genome.wustl.edu	37	19	12774228	12774228	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	12774228	12774228	A	G	SNP	MAN2B1	ENST00000456935	human	ensembl	74_37	-1	known	missense	c.812	p.V271A	0.001	pfam_Glyco_hydro_38_N,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774				82	0	0	43	32	42.6667
WDR83OS	0	genome.wustl.edu	37	19	12779388	12779388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	12779388	12779388	C	T	SNP	WDR83OS	ENST00000596731	human	ensembl	74_37	-1	known	missense	c.200	p.S67N	1.000	pfam_UPF0139	pfam_UPF0139	-	no_errors	WDR83OS	HGNC	ENSG00000105583				42	0	0	21	15	41.6667
HOOK2	0	genome.wustl.edu	37	19	12882020	12882020	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	12882020	12882020	C	T	SNP	HOOK2	ENST00000397668	human	ensembl	74_37	-1	known	silent	c.714	p.L238	0.983	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_UBA-like	-	no_errors	HOOK2	HGNC	ENSG00000095066				22	0	0	11	10	47.619
RNASEH2A	0	genome.wustl.edu	37	19	12918244	12918244	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	12918244	12918244	A	G	SNP	RNASEH2A	ENST00000221486	human	ensembl	74_37	+1	known	missense	c.335	p.N112S	1.000	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	-	no_errors	RNASEH2A	HGNC	ENSG00000104889				100	1	0.990099	52	35	40.2299
TRMT1	0	genome.wustl.edu	37	19	13223557	13223557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	13223557	13223557	C	T	SNP	TRMT1	ENST00000357720	human	ensembl	74_37	-1	known	missense	c.832	p.G278R	1.000	pfam_TRM1,tigrfam_TRM1	pfam_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907				96	0	0	71	25	26.0417
CACNA1A	0	genome.wustl.edu	37	19	13363878	13363878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	13363878	13363878	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.4793	p.R1598Q	0.055	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				75	0	0	48	31	39.2405
CACNA1A	0	genome.wustl.edu	37	19	13418941	13418941	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	13418941	13418941	C	T	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.1906	p.G636S	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				40	0	0	50	5	9.09091
CCDC130	0	genome.wustl.edu	37	19	13869968	13869968	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	13869968	13869968	G	C	SNP	CCDC130	ENST00000221554	human	ensembl	74_37	+1	known	missense	c.455	p.G152A	0.975	pfam_CWC16	pfam_CWC16	-	no_errors	CCDC130	HGNC	ENSG00000104957				25	0	0	27	5	15.625
NANOS3	0	genome.wustl.edu	37	19	13991390	13991390	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	13991390	13991390	G	A	SNP	NANOS3	ENST00000591161	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NANOS3	HGNC	ENSG00000187556				42	0	0	27	6	18.1818
LPHN1	0	genome.wustl.edu	37	19	14281569	14281569	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	14281569	14281569	C	T	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.319	p.G107S	1.000	pfam_Lectin_gal-bd_dom,pfscan_Lectin_gal-bd_dom	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				36	0	0	13	6	31.5789
PCSK4	0	genome.wustl.edu	37	19	1483346	1483346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	1483346	1483346	C	T	SNP	PCSK4	ENST00000300954	human	ensembl	74_37	-1	known	missense	c.1508	p.R503H	1.000	pfam_PrprotnconvertsP,superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK4	HGNC	ENSG00000115257				44	0	0	25	6	19.3548
SLC1A6	0	genome.wustl.edu	37	19	15072900	15072900	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	15072900	15072900	A	G	SNP	SLC1A6	ENST00000221742	human	ensembl	74_37	-1	known	silent	c.849	p.G283	0.698	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143				145	0	0	68	31	31.3131
CASP14	0	genome.wustl.edu	37	19	15166256	15166256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	15166256	15166256	G	A	SNP	CASP14	ENST00000221740	human	ensembl	74_37	+1	known	missense	c.536	p.R179Q	1.000	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10,prints_Pept_C14A_p45_core	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP14	HGNC	ENSG00000105141				99	0	0	78	5	6.0241
ILVBL	0	genome.wustl.edu	37	19	15227029	15227029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	15227029	15227029	C	T	SNP	ILVBL	ENST00000263383	human	ensembl	74_37	-1	known	missense	c.1405	p.G469R	0.999	pfam_TPP_enzyme-bd_C	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_TPP_enzyme-bd_C,pfam_Thiamin_PyroP_enz_cen_dom	-	no_errors	ILVBL	HGNC	ENSG00000105135				157	0	0	127	52	29.0503
NOTCH3	0	genome.wustl.edu	37	19	15311612	15311612	+	Silent	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	15311612	15311612	C	G	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	silent	c.105	p.G35	0.993	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				8	0	0	6	3	33.3333
BRD4	0	genome.wustl.edu	37	19	15349943	15349943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	15349943	15349943	G	A	SNP	BRD4	ENST00000263377	human	ensembl	74_37	-1	known	missense	c.3709	p.R1237C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				29	0	0	16	9	36
WIZ	0	genome.wustl.edu	37	19	15535132	15535132	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	15535132	15535132	T	C	SNP	WIZ	ENST00000389282	human	ensembl	74_37	-1	known	missense	c.4658	p.D1553G	0.925	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451				63	0	0	39	21	35
WIZ	0	genome.wustl.edu	37	19	15538114	15538114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	15538114	15538114	C	T	SNP	WIZ	ENST00000389282	human	ensembl	74_37	-1	known	missense	c.3331	p.A1111T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451				55	0	0	36	23	38.9831
MEX3D	0	genome.wustl.edu	37	19	1556759	1556759	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	1556759	1556759	C	T	SNP	MEX3D	ENST00000388824	human	ensembl	74_37	-1	known	silent	c.759	p.T253	0.377	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3D	HGNC	ENSG00000181588				56	0	0	37	29	43.9394
CYP4F2	0	genome.wustl.edu	37	19	15989614	15989614	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	15989614	15989614	G	A	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	silent	c.1530	p.G510	0.978	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115				42	0	0	61	5	7.57576
CYP4F11	0	genome.wustl.edu	37	19	16024702	16024702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	16024702	16024702	G	A	SNP	CYP4F11	ENST00000248041	human	ensembl	74_37	-1	known	missense	c.1415	p.A472V	0.460	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903				24	0	0	19	14	42.4242
CHERP	0	genome.wustl.edu	37	19	16646277	16646277	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	16646277	16646277	G	A	SNP	CHERP	ENST00000546361	human	ensembl	74_37	-1	known	silent	c.370	p.L124	1.000	NULL	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872				16	0	0	14	8	36.3636
NWD1	0	genome.wustl.edu	37	19	16860883	16860883	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	16860883	16860883	A	T	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.1430	p.D477V	0.000	superfamily_P-loop_NTPase	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				137	0	0	65	33	33.6735
MYO9B	0	genome.wustl.edu	37	19	17213187	17213187	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	17213187	17213187	C	T	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	silent	c.660	p.D220	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				156	0	0	84	55	39.5683
MYO9B	0	genome.wustl.edu	37	19	17311596	17311596	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	17311596	17311596	C	T	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	silent	c.4521	p.N1507	0.929	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				133	0	0	65	51	43.9655
MAP1S	0	genome.wustl.edu	37	19	17836977	17836977	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	17836977	17836977	A	G	SNP	MAP1S	ENST00000324096	human	ensembl	74_37	+1	known	missense	c.784	p.T262A	1.000	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479				25	0	0	15	9	37.5
ARRDC2	0	genome.wustl.edu	37	19	18119242	18119242	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	18119242	18119242	C	T	SNP	ARRDC2	ENST00000222250	human	ensembl	74_37	+1	known	silent	c.123	p.A41	0.797	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC2	HGNC	ENSG00000105643				21	0	0	18	9	33.3333
JUND	0	genome.wustl.edu	37	19	18391291	18391291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	18391291	18391291	C	T	SNP	JUND	ENST00000252818	human	ensembl	74_37	-1	known	missense	c.1004	p.G335D	1.000	prints_Leuzip_Jun	pfam_JNK,pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUND	HGNC	ENSG00000130522				17	0	0	11	9	45
FKBP8	0	genome.wustl.edu	37	19	18649226	18649226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	18649226	18649226	G	A	SNP	FKBP8	ENST00000453489	human	ensembl	74_37	-1	known	missense	c.656	p.P219L	0.997	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701				33	0	0	27	13	32.5
FKBP8	0	genome.wustl.edu	37	19	18652683	18652683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	18652683	18652683	G	A	SNP	FKBP8	ENST00000453489	human	ensembl	74_37	-1	known	missense	c.185	p.A62V	0.141	NULL	pfam_PPIase_FKBP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP8	HGNC	ENSG00000105701				21	0	0	19	14	42.4242
CERS1	0	genome.wustl.edu	37	19	18990153	18990153	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	18990153	18990153	G	A	SNP	CERS1	ENST00000427170	human	ensembl	74_37	-1	known	missense	c.797	p.A266V	1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom	-	no_errors	CERS1	HGNC	ENSG00000223802				11	0	0	9	6	40
HOMER3	0	genome.wustl.edu	37	19	19042329	19042329	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	19042329	19042329	T	C	SNP	HOMER3	ENST00000392351	human	ensembl	74_37	-1	known	missense	c.796	p.T266A	1.000	NULL	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	HOMER3	HGNC	ENSG00000051128				106	0	0	65	35	35
CILP2	0	genome.wustl.edu	37	19	19655251	19655251	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	19655251	19655251	G	A	SNP	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	missense	c.1897	p.E633K	0.996	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161				153	0	0	90	29	24.3697
PBX4	0	genome.wustl.edu	37	19	19680322	19680322	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	19680322	19680322	T	C	SNP	PBX4	ENST00000251203	human	ensembl	74_37	-1	known	missense	c.704	p.N235S	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX4	HGNC	ENSG00000105717				278	0	0	134	93	40.9692
LPAR2	0	genome.wustl.edu	37	19	19737709	19737709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	19737709	19737709	G	A	SNP	LPAR2	ENST00000407877	human	ensembl	74_37	-1	known	missense	c.385	p.R129W	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG4,prints_GPCR_Rhodpsn,prints_LPA_rcpt,prints_LPA_rcpt_EDG2,prints_Melcrt_ACTH_rcpt,prints_S1P_rcpt	-	no_errors	LPAR2	HGNC	ENSG00000064547				13	0	0	9	11	55
ATP13A1	0	genome.wustl.edu	37	19	19766239	19766239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	19766239	19766239	G	A	SNP	ATP13A1	ENST00000357324	human	ensembl	74_37	-1	known	missense	c.1420	p.R474C	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A1	HGNC	ENSG00000105726				63	0	0	47	4	7.84314
BTBD2	0	genome.wustl.edu	37	19	1993130	1993130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	1993130	1993130	C	T	SNP	BTBD2	ENST00000255608	human	ensembl	74_37	-1	known	missense	c.573	p.M191I	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD2	HGNC	ENSG00000133243				37	0	0	19	10	34.4828
MKNK2	0	genome.wustl.edu	37	19	2041092	2041092	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	2041092	2041092	C	A	SNP	MKNK2	ENST00000250896	human	ensembl	74_37	-1	known	missense	c.1057	p.A353S	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MKNK2	HGNC	ENSG00000099875				93	0	0	42	39	48.1481
ZNF708	0	genome.wustl.edu	37	19	21476766	21476766	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	21476766	21476766	T	C	SNP	ZNF708	ENST00000356929	human	ensembl	74_37	-1	known	silent	c.1002	p.K334	0.997	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF708	HGNC	ENSG00000182141				43	0	0	63	4	5.97015
ZNF493	0	genome.wustl.edu	37	19	21606876	21606876	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	21606876	21606876	G	A	SNP	ZNF493	ENST00000355504	human	ensembl	74_37	+1	known	missense	c.1031	p.R344Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF493	HGNC	ENSG00000196268				39	0	0	25	15	37.5
ZNF100	0	genome.wustl.edu	37	19	21927839	21927839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	21927839	21927839	C	T	SNP	ZNF100	ENST00000358296	human	ensembl	74_37	-1	known	missense	c.127	p.E43K	0.942	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF100	HGNC	ENSG00000197020				119	0	0	62	49	44.1441
ZNF257	0	genome.wustl.edu	37	19	22271242	22271242	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	22271242	22271242	A	G	SNP	ZNF257	ENST00000594947	human	ensembl	74_37	+1	known	silent	c.690	p.K230	0.047	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134				53	0	0	35	12	25.5319
OAZ1	0	genome.wustl.edu	37	19	2272973	2272973	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	2272973	2272973	G	A	SNP	OAZ1	ENST00000322297	human	ensembl	74_37	+1	known	missense	c.550	p.A184T	0.487	pfam_ODC_AZ,superfamily_Acyl_CoA_acyltransferase	pfam_ODC_AZ,superfamily_Acyl_CoA_acyltransferase	-	no_errors	OAZ1	HGNC	ENSG00000104904				19	0	0	8	8	50
SPPL2B	0	genome.wustl.edu	37	19	2353174	2353174	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	2353174	2353174	G	A	SNP	SPPL2B	ENST00000452401	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SPPL2B	HGNC	ENSG00000005206				32	0	0	18	15	45.4545
DIRAS1	0	genome.wustl.edu	37	19	2717476	2717476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	2717476	2717476	C	T	SNP	DIRAS1	ENST00000323469	human	ensembl	74_37	-1	known	missense	c.329	p.S110N	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	DIRAS1	HGNC	ENSG00000176490				64	0	0	53	7	11.6667
ZNF556	0	genome.wustl.edu	37	19	2877612	2877612	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	2877612	2877612	C	T	SNP	ZNF556	ENST00000307635	human	ensembl	74_37	+1	known	missense	c.656	p.T219I	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF556	HGNC	ENSG00000172000				91	0	0	51	17	25
ZNF77	0	genome.wustl.edu	37	19	2933649	2933649	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	2933649	2933649	G	A	SNP	ZNF77	ENST00000314531	human	ensembl	74_37	-1	known	silent	c.1476	p.Y492	0.039	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF77	HGNC	ENSG00000175691				86	0	0	59	6	9.23077
TLE6	0	genome.wustl.edu	37	19	2993498	2993498	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	2993498	2993498	G	A	SNP	TLE6	ENST00000246112	human	ensembl	74_37	+1	known	nonsense	c.1455	p.W485*	1.000	superfamily_WD40_repeat_dom,prints_Groucho_enhance	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE6	HGNC	ENSG00000104953				72	0	0	28	28	50
ZNF536	0	genome.wustl.edu	37	19	30935266	30935266	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	30935266	30935266	A	G	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.797	p.D266G	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				40	0	0	38	7	15.5556
ZNF536	0	genome.wustl.edu	37	19	30936402	30936402	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	30936402	30936402	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	nonsense	c.1933	p.Q645*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				161	0	0	171	15	8.06452
ZNF536	0	genome.wustl.edu	37	19	31039824	31039824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	31039824	31039824	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.3298	p.V1100M	0.953	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				86	0	0	73	36	33.0275
WDR88	0	genome.wustl.edu	37	19	33623225	33623225	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	33623225	33623225	G	A	SNP	WDR88	ENST00000355868	human	ensembl	74_37	+1	known	silent	c.150	p.P50	0.000	NULL	pfam_WD40_repeat,pfam_PQQ_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_PQQ_beta_propeller_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR88	HGNC	ENSG00000166359				121	0	0	130	42	24.4186
PEPD	0	genome.wustl.edu	37	19	33878152	33878152	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	33878152	33878152	G	A	SNP	PEPD	ENST00000589598	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PEPD	HGNC	ENSG00000124299				50	0	0	44	19	30.1587
KCTD15	0	genome.wustl.edu	37	19	34292175	34292175	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	34292175	34292175	C	A	SNP	KCTD15	ENST00000430256	human	ensembl	74_37	+1	known	missense	c.170	p.P57H	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD15	HGNC	ENSG00000153885				74	0	0	88	7	7.36842
SCN1B	0	genome.wustl.edu	37	19	35523454	35523454	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	35523454	35523454	C	T	SNP	SCN1B	ENST00000262631	human	ensembl	74_37	+1	known	silent	c.63	p.C21	0.844	NULL	pfam_Immunoglobulin,pfam_Ig_V-set	-	no_errors	SCN1B	HGNC	ENSG00000105711				115	0	0	71	86	54.7771
LGI4	0	genome.wustl.edu	37	19	35616218	35616218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	35616218	35616218	G	A	SNP	LGI4	ENST00000310123	human	ensembl	74_37	-1	known	missense	c.1493	p.A498V	0.404	NULL	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI4	HGNC	ENSG00000153902				53	0	0	63	13	17.1053
FAM187B	0	genome.wustl.edu	37	19	35715961	35715961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	35715961	35715961	C	T	SNP	FAM187B	ENST00000324675	human	ensembl	74_37	-1	known	missense	c.877	p.V293M	0.001	NULL	NULL	-	no_errors	FAM187B	HGNC	ENSG00000177558				23	0	0	23	26	53.0612
LSR	0	genome.wustl.edu	37	19	35758063	35758063	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	35758063	35758063	C	A	SNP	LSR	ENST00000361790	human	ensembl	74_37	+1	known	missense	c.1340	p.S447Y	0.050	NULL	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LSR	HGNC	ENSG00000105699				56	0	0	43	50	53.7634
ATP4A	0	genome.wustl.edu	37	19	36046156	36046156	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	36046156	36046156	G	A	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	silent	c.2238	p.G746	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				82	0	0	81	25	23.5849
HAUS5	0	genome.wustl.edu	37	19	36105982	36105982	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	36105982	36105982	C	T	SNP	HAUS5	ENST00000203166	human	ensembl	74_37	+1	known	silent	c.258	p.R86	0.095	NULL	NULL	-	no_errors	HAUS5	HGNC	ENSG00000249115				18	0	0	12	6	33.3333
PRODH2	0	genome.wustl.edu	37	19	36293939	36293939	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	36293939	36293939	C	T	SNP	PRODH2	ENST00000301175	human	ensembl	74_37	-1	known	missense	c.1271	p.R424H	0.941	pfam_Proline_DH	pfam_Proline_DH	-	no_errors	PRODH2	HGNC	ENSG00000250799				8	0	0	11	3	21.4286
LRFN3	0	genome.wustl.edu	37	19	36431147	36431147	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	36431147	36431147	T	A	SNP	LRFN3	ENST00000246529	human	ensembl	74_37	+1	known	missense	c.820	p.S274T	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN3	HGNC	ENSG00000126243				34	0	0	23	39	62.9032
LRFN3	0	genome.wustl.edu	37	19	36435683	36435683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	36435683	36435683	C	T	SNP	LRFN3	ENST00000246529	human	ensembl	74_37	+1	known	missense	c.1649	p.S550L	0.997	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN3	HGNC	ENSG00000126243				38	0	0	13	23	63.8889
WDR62	0	genome.wustl.edu	37	19	36594542	36594542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	36594542	36594542	C	T	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	missense	c.3812	p.A1271V	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				96	0	0	119	16	11.8519
ZFP82	0	genome.wustl.edu	37	19	36883660	36883660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	36883660	36883660	G	A	SNP	ZFP82	ENST00000392161	human	ensembl	74_37	-1	known	missense	c.1582	p.H528Y	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP82	HGNC	ENSG00000181007				39	0	0	14	13	48.1481
TJP3	0	genome.wustl.edu	37	19	3740615	3740615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	3740615	3740615	C	T	SNP	TJP3	ENST00000262968	human	ensembl	74_37	+1	known	missense	c.1796	p.A599V	0.000	superfamily_SH3_domain,prints_ZonOcculS3	pfam_PDZ,pfam_SH3_2,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289				23	0	0	15	9	37.5
ZNF585A	0	genome.wustl.edu	37	19	37643977	37643977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	37643977	37643977	C	T	SNP	ZNF585A	ENST00000356958	human	ensembl	74_37	-1	known	missense	c.824	p.C275Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585A	HGNC	ENSG00000196967				245	0	0	93	95	50.5319
ZNF585B	0	genome.wustl.edu	37	19	37676233	37676233	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	37676233	37676233	G	C	SNP	ZNF585B	ENST00000532828	human	ensembl	74_37	-1	known	missense	c.2206	p.H736D	0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585B	HGNC	ENSG00000245680				144	0	0	102	36	26.087
RASGRP4	0	genome.wustl.edu	37	19	38901993	38901993	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	38901993	38901993	C	T	SNP	RASGRP4	ENST00000587738	human	ensembl	74_37	-1	known	missense	c.1709	p.R570H	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777				11	0	0	12	5	29.4118
RYR1	0	genome.wustl.edu	37	19	38980033	38980033	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	38980033	38980033	T	C	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	silent	c.5764	p.L1922	0.927	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				94	0	0	91	20	18.018
RYR1	0	genome.wustl.edu	37	19	39002998	39002998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	39002998	39002998	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.9347	p.S3116L	0.996	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				87	0	0	99	32	24.4275
RYR1	0	genome.wustl.edu	37	19	39034443	39034443	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	39034443	39034443	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	silent	c.11940	p.A3980	0.561	pfam_RIH_assoc-dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				44	0	0	61	4	6.15385
SARS2	0	genome.wustl.edu	37	19	39406305	39406305	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	39406305	39406305	A	G	SNP	SARS2	ENST00000600042	human	ensembl	74_37	-1	known	missense	c.1504	p.Y502H	1.000	NULL	pirsf_Ser-tRNA-ligase_type_1,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_tRNA-bd_arm,prints_Ser-tRNA-ligase_type_1,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS2	HGNC	ENSG00000104835				103	0	0	91	13	12.5
NCCRP1	0	genome.wustl.edu	37	19	39691347	39691347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	39691347	39691347	G	A	SNP	NCCRP1	ENST00000339852	human	ensembl	74_37	+1	known	missense	c.779	p.R260Q	0.978	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	-	no_errors	NCCRP1	HGNC	ENSG00000188505				341	0	0	281	96	25.4642
LRFN1	0	genome.wustl.edu	37	19	39799138	39799138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	39799138	39799138	G	A	SNP	LRFN1	ENST00000248668	human	ensembl	74_37	-1	known	missense	c.1451	p.A484V	0.984	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN1	HGNC	ENSG00000128011				40	0	0	45	15	25
SAMD4B	0	genome.wustl.edu	37	19	39867347	39867347	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	39867347	39867347	C	T	SNP	SAMD4B	ENST00000314471	human	ensembl	74_37	+1	known	silent	c.1020	p.N340	0.997	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	-	no_errors	SAMD4B	HGNC	ENSG00000179134				51	0	0	52	12	18.75
FCGBP	0	genome.wustl.edu	37	19	40411750	40411750	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	40411750	40411750	A	G	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.3878	p.V1293A	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				133	0	0	73	94	56.2874
FCGBP	0	genome.wustl.edu	37	19	40419887	40419887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	40419887	40419887	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.3107	p.T1036M	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				81	0	0	66	30	31.25
SPTBN4	0	genome.wustl.edu	37	19	41040082	41040082	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	41040082	41040082	C	T	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	silent	c.4191	p.S1397	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				32	0	0	37	5	11.9048
MAP2K2	0	genome.wustl.edu	37	19	4117561	4117561	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	4117561	4117561	C	T	SNP	MAP2K2	ENST00000262948	human	ensembl	74_37	-1	known	silent	c.159	p.R53	0.004	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K2	HGNC	ENSG00000126934				143	0	0	79	39	33.0508
C19orf54	0	genome.wustl.edu	37	19	41249854	41249854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	41249854	41249854	G	A	SNP	C19orf54	ENST00000378313	human	ensembl	74_37	-1	known	missense	c.674	p.P225L	1.000	NULL	NULL	-	no_errors	C19orf54	HGNC	ENSG00000188493				106	0	0	97	27	21.7742
AXL	0	genome.wustl.edu	37	19	41762422	41762422	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	41762422	41762422	A	G	SNP	AXL	ENST00000301178	human	ensembl	74_37	+1	known	missense	c.2102	p.D701G	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601				127	0	0	100	126	55.7522
HNRNPUL1	0	genome.wustl.edu	37	19	41779901	41779901	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	41779901	41779901	A	G	SNP	HNRNPUL1	ENST00000392006	human	ensembl	74_37	+1	known	missense	c.587	p.Q196R	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SAP_dom,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323				93	0	0	65	19	22.619
HNRNPUL1	0	genome.wustl.edu	37	19	41811617	41811617	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	41811617	41811617	T	C	SNP	HNRNPUL1	ENST00000392006	human	ensembl	74_37	+1	known	missense	c.2299	p.Y767H	0.993	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323				162	0	0	156	38	19.5876
CCDC97	0	genome.wustl.edu	37	19	41822545	41822545	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	41822545	41822545	C	T	SNP	CCDC97	ENST00000269967	human	ensembl	74_37	+1	known	silent	c.303	p.H101	0.566	NULL	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039				64	0	0	51	23	31.0811
ZNF574	0	genome.wustl.edu	37	19	42584906	42584906	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	42584906	42584906	C	A	SNP	ZNF574	ENST00000222339	human	ensembl	74_37	+1	known	silent	c.2418	p.A806	0.046	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF574	HGNC	ENSG00000105732				182	0	0	173	24	12.1827
CCDC94	0	genome.wustl.edu	37	19	4262085	4262085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	4262085	4262085	C	T	SNP	CCDC94	ENST00000262962	human	ensembl	74_37	+1	known	missense	c.682	p.P228S	0.338	pfam_CWC16	pfam_CWC16	-	no_errors	CCDC94	HGNC	ENSG00000105248				80	0	0	50	28	35.8974
GSK3A	0	genome.wustl.edu	37	19	42736814	42736814	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	42736814	42736814	C	T	SNP	GSK3A	ENST00000222330	human	ensembl	74_37	-1	known	silent	c.1119	p.P373	0.343	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	GSK3A	HGNC	ENSG00000105723				52	0	0	51	29	36.25
CIC	0	genome.wustl.edu	37	19	42791286	42791286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	42791286	42791286	G	A	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.346	p.V116M	0.769	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				75	0	0	62	8	11.4286
MEGF8	0	genome.wustl.edu	37	19	42862379	42862379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	42862379	42862379	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	missense	c.5095	p.A1699T	1.000	superfamily_Gal_Oxase/kelch_b-propeller	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429				19	0	0	22	8	26.6667
CEACAM1	0	genome.wustl.edu	37	19	43023297	43023297	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	43023297	43023297	G	A	SNP	CEACAM1	ENST00000161559	human	ensembl	74_37	-1	known	missense	c.1049	p.T350I	0.001	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM1	HGNC	ENSG00000079385				139	0	0	125	9	6.71642
IRGQ	0	genome.wustl.edu	37	19	44096570	44096570	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44096570	44096570	C	T	SNP	IRGQ	ENST00000422989	human	ensembl	74_37	-1	known	missense	c.1480	p.A494T	0.329	NULL	superfamily_P-loop_NTPase	-	no_errors	IRGQ	HGNC	ENSG00000167378				13	0	0	12	3	20
CADM4	0	genome.wustl.edu	37	19	44131420	44131420	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44131420	44131420	G	A	SNP	CADM4	ENST00000222374	human	ensembl	74_37	-1	known	missense	c.262	p.R88W	1.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM4	HGNC	ENSG00000105767				72	0	0	80	36	31.0345
UBXN6	0	genome.wustl.edu	37	19	4446124	4446124	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	4446124	4446124	C	T	SNP	UBXN6	ENST00000301281	human	ensembl	74_37	-1	known	nonsense	c.1122	p.W374*	1.000	pfam_UBX,smart_UBX,pfscan_UBX	pfam_PUB_domain,pfam_UBX,smart_PUG-dom,smart_UBX,pfscan_UBX	-	no_errors	UBXN6	HGNC	ENSG00000167671				47	0	0	44	5	10.2041
LOC101928063	0	genome.wustl.edu	37	19	44503252	44503252	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44503252	44503252	G	A	SNP	LOC101928063	ENST00000586860	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-15A1.7	Clone_based_vega_gene	ENSG00000266921				15	0	0	9	3	25
ZNF230	0	genome.wustl.edu	37	19	44515452	44515452	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44515452	44515452	A	G	SNP	ZNF230	ENST00000429154	human	ensembl	74_37	+1	known	missense	c.1261	p.K421E	0.001	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF230	HGNC	ENSG00000159882				140	0	0	124	23	15.6463
LOC100379224	0	genome.wustl.edu	37	19	44610440	44610440	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44610440	44610440	G	A	SNP	LOC100379224	ENST00000592946	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AC084219.4	Clone_based_vega_gene	ENSG00000186019				23	0	0	8	6	42.8571
ZNF225	0	genome.wustl.edu	37	19	44636503	44636503	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44636503	44636503	G	T	SNP	ZNF225	ENST00000262894	human	ensembl	74_37	+1	known	missense	c.1736	p.R579L	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF225	HGNC	ENSG00000256294				88	0	0	43	62	59.0476
ZNF227	0	genome.wustl.edu	37	19	44740078	44740078	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44740078	44740078	A	G	SNP	ZNF227	ENST00000313040	human	ensembl	74_37	+1	known	missense	c.1495	p.K499E	0.795	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF227	HGNC	ENSG00000131115				84	0	0	73	27	27
HDGFRP2	0	genome.wustl.edu	37	19	4475282	4475282	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	4475282	4475282	T	A	SNP	HDGFRP2	ENST00000301284	human	ensembl	74_37	+1	known	missense	c.83	p.I28N	0.405	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	HDGFRP2	Uniprot_gn	ENSG00000167674				57	0	0	35	16	31.3725
ZNF235	0	genome.wustl.edu	37	19	44791768	44791768	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44791768	44791768	C	T	SNP	ZNF235	ENST00000291182	human	ensembl	74_37	-1	known	missense	c.1820	p.R607Q	0.076	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917				219	1	0.454545	145	52	26.3959
ZNF235	0	genome.wustl.edu	37	19	44792901	44792901	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44792901	44792901	C	T	SNP	ZNF235	ENST00000291182	human	ensembl	74_37	-1	known	silent	c.687	p.V229	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917				92	0	0	57	18	24
ZNF235	0	genome.wustl.edu	37	19	44803829	44803829	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44803829	44803829	C	T	SNP	ZNF235	ENST00000291182	human	ensembl	74_37	-1	known	silent	c.72	p.L24	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF235	HGNC	ENSG00000159917				264	0	0	216	74	25.5172
CEACAM20	0	genome.wustl.edu	37	19	45026685	45026685	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45026685	45026685	A	G	SNP	CEACAM20	ENST00000316962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CEACAM20	HGNC	ENSG00000176395				30	0	0	16	12	42.8571
PLIN4	0	genome.wustl.edu	37	19	4508874	4508874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	4508874	4508874	C	T	SNP	PLIN4	ENST00000301286	human	ensembl	74_37	-1	novel	missense	c.3566	p.R1189H	1.000	pfam_Perilipin	pfam_Perilipin,superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PLIN4	HGNC	ENSG00000167676				23	0	0	7	16	69.5652
CBLC	0	genome.wustl.edu	37	19	45281378	45281378	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45281378	45281378	G	A	SNP	CBLC	ENST00000270279	human	ensembl	74_37	+1	known	missense	c.190	p.A64T	0.000	pfam_Adaptor_Cbl_N_hlx,superfamily_Adaptor_Cbl_N_hlx	pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Adaptor_Cbl_N_hlx,pfam_Znf_C3HC4_RING-type,superfamily_Adaptor_Cbl_N_hlx,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CBLC	HGNC	ENSG00000142273				32	0	0	32	24	42.8571
BCAM	0	genome.wustl.edu	37	19	45316592	45316592	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45316592	45316592	A	G	SNP	BCAM	ENST00000270233	human	ensembl	74_37	+1	known	missense	c.590	p.E197G	0.201	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BCAM	HGNC	ENSG00000187244				56	0	0	53	82	60.7407
BCAM	0	genome.wustl.edu	37	19	45318008	45318008	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45318008	45318008	C	T	SNP	BCAM	ENST00000270233	human	ensembl	74_37	+1	known	missense	c.1069	p.R357C	0.236	smart_Ig_sub	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BCAM	HGNC	ENSG00000187244				68	0	0	66	32	32.6531
GEMIN7	0	genome.wustl.edu	37	19	45593471	45593471	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45593471	45593471	C	A	SNP	GEMIN7	ENST00000270257	human	ensembl	74_37	+1	known	silent	c.99	p.P33	0.000	NULL	pfam_SMN_gemin7	-	no_errors	GEMIN7	HGNC	ENSG00000142252				128	0	0	102	36	26.087
GEMIN7	0	genome.wustl.edu	37	19	45593631	45593631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45593631	45593631	C	T	SNP	GEMIN7	ENST00000270257	human	ensembl	74_37	+1	known	missense	c.259	p.R87C	0.856	pfam_SMN_gemin7	pfam_SMN_gemin7	-	no_errors	GEMIN7	HGNC	ENSG00000142252				71	0	0	29	48	62.3377
TRAPPC6A	0	genome.wustl.edu	37	19	45667454	45667454	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45667454	45667454	A	T	SNP	TRAPPC6A	ENST00000006275	human	ensembl	74_37	-1	known	missense	c.364	p.S122T	0.000	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_TRAPP_component,superfamily_NO_sig/Golgi_transp_ligand-bd	-	no_errors	TRAPPC6A	HGNC	ENSG00000007255				25	0	0	26	11	29.7297
PPP1R13L	0	genome.wustl.edu	37	19	45885943	45885943	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45885943	45885943	A	G	SNP	PPP1R13L	ENST00000360957	human	ensembl	74_37	-1	known	missense	c.2290	p.Y764H	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881				65	0	0	67	20	22.9885
PPP1R13L	0	genome.wustl.edu	37	19	45889310	45889310	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45889310	45889310	C	A	SNP	PPP1R13L	ENST00000360957	human	ensembl	74_37	-1	known	missense	c.1944	p.K648N	0.995	superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881				8	0	0	17	6	26.087
PPP1R13L	0	genome.wustl.edu	37	19	45899882	45899882	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45899882	45899882	G	A	SNP	PPP1R13L	ENST00000360957	human	ensembl	74_37	-1	known	silent	c.633	p.Y211	0.969	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881				16	0	0	16	19	54.2857
EML2	0	genome.wustl.edu	37	19	46116926	46116926	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	46116926	46116926	A	T	SNP	EML2	ENST00000587152	human	ensembl	74_37	-1	known	missense	c.2300	p.I767N	1.000	superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Quinoprot_gluc/sorb_DH,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML2	HGNC	ENSG00000125746				79	0	0	92	10	9.80392
GIPR	0	genome.wustl.edu	37	19	46173991	46173991	+	Silent	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	46173991	46173991	A	C	SNP	GIPR	ENST00000590918	human	ensembl	74_37	+1	known	silent	c.171	p.S57	0.990	smart_GPCR_2_extracellular_dom,prints_GPCR_2_GIP_rcpt,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,prints_GPCR_2_GIP_rcpt,prints_GPCR_2_secretin-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	GIPR	HGNC	ENSG00000010310				9	0	0	21	4	16
SNRPD2	0	genome.wustl.edu	37	19	46190938	46190938	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	46190938	46190938	A	G	SNP	SNRPD2	ENST00000342669	human	ensembl	74_37	-1	known	missense	c.230	p.V77A	1.000	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPD2	HGNC	ENSG00000125743				101	0	0	41	54	56.8421
QPCTL	0	genome.wustl.edu	37	19	46198751	46198751	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	46198751	46198751	C	A	SNP	QPCTL	ENST00000012049	human	ensembl	74_37	+1	known	silent	c.408	p.P136	0.997	NULL	pfam_Peptidase_M28	-	no_errors	QPCTL	HGNC	ENSG00000011478				163	0	0	169	12	6.62983
FBXO46	0	genome.wustl.edu	37	19	46215024	46215024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	46215024	46215024	C	T	SNP	FBXO46	ENST00000317683	human	ensembl	74_37	-1	known	missense	c.1730	p.R577H	1.000	superfamily_F-box_dom	superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO46	HGNC	ENSG00000177051				15	0	0	19	4	17.3913
FBXO46	0	genome.wustl.edu	37	19	46215601	46215601	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	46215601	46215601	T	C	SNP	FBXO46	ENST00000317683	human	ensembl	74_37	-1	known	missense	c.1153	p.T385A	0.984	NULL	superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO46	HGNC	ENSG00000177051				83	0	0	156	11	6.58683
FBXO46	0	genome.wustl.edu	37	19	46215953	46215953	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	46215953	46215953	G	A	SNP	FBXO46	ENST00000317683	human	ensembl	74_37	-1	known	silent	c.801	p.N267	0.241	NULL	superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO46	HGNC	ENSG00000177051				55	0	0	49	17	25.7576
SYMPK	0	genome.wustl.edu	37	19	46328490	46328490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	46328490	46328490	G	A	SNP	SYMPK	ENST00000245934	human	ensembl	74_37	-1	known	missense	c.2429	p.A810V	1.000	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755				87	0	0	59	76	56.2963
CCDC61	0	genome.wustl.edu	37	19	46521596	46521596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	46521596	46521596	G	A	SNP	CCDC61	ENST00000263284	human	ensembl	74_37	+1	known	missense	c.1547	p.R516H	1.000	NULL	NULL	-	no_errors	CCDC61	HGNC	ENSG00000104983				12	0	0	6	15	71.4286
STRN4	0	genome.wustl.edu	37	19	47224014	47224014	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	47224014	47224014	G	T	SNP	STRN4	ENST00000391910	human	ensembl	74_37	-1	known	missense	c.2128	p.L710M	0.997	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_Striatin_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN4	HGNC	ENSG00000090372				51	0	0	25	20	44.4444
C5AR2	0	genome.wustl.edu	37	19	47844795	47844795	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	47844795	47844795	G	A	SNP	C5AR2	ENST00000257267	human	ensembl	74_37	+1	known	missense	c.739	p.A247T	0.041	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Anaphtx_C5AR1/C5AR2	-	no_errors	C5AR2	HGNC	ENSG00000134830				99	0	0	53	66	55.4622
GLTSCR1	0	genome.wustl.edu	37	19	48197675	48197675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	48197675	48197675	C	T	SNP	GLTSCR1	ENST00000396720	human	ensembl	74_37	+1	known	missense	c.2587	p.R863C	0.003	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169				9	0	0	17	10	37.037
GLTSCR1	0	genome.wustl.edu	37	19	48197801	48197801	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	48197801	48197801	G	A	SNP	GLTSCR1	ENST00000396720	human	ensembl	74_37	+1	known	missense	c.2713	p.D905N	0.348	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169				40	0	0	53	16	23.1884
KCNJ14	0	genome.wustl.edu	37	19	48967755	48967755	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	48967755	48967755	C	T	SNP	KCNJ14	ENST00000342291	human	ensembl	74_37	+1	known	silent	c.1032	p.V344	0.413	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ14	HGNC	ENSG00000182324				47	0	0	33	16	32.6531
CYTH2	0	genome.wustl.edu	37	19	48981786	48981786	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	48981786	48981786	A	G	SNP	CYTH2	ENST00000427476	human	ensembl	74_37	+1	known	missense	c.1052	p.H351R	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH2	HGNC	ENSG00000105443				81	0	0	108	7	6.08696
SPACA4	0	genome.wustl.edu	37	19	49110328	49110328	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49110328	49110328	C	A	SNP	SPACA4	ENST00000321762	human	ensembl	74_37	+1	known	silent	c.93	p.S31	0.022	pfam_LY6_UPAR	pfam_LY6_UPAR	-	no_errors	SPACA4	HGNC	ENSG00000177202				132	0	0	238	17	6.66667
HSD17B14	0	genome.wustl.edu	37	19	49339655	49339655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49339655	49339655	G	A	SNP	HSD17B14	ENST00000263278	human	ensembl	74_37	-1	known	missense	c.14	p.T5M	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B14	HGNC	ENSG00000087076				92	0	0	44	81	64.8
TULP2	0	genome.wustl.edu	37	19	49400623	49400623	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49400623	49400623	C	T	SNP	TULP2	ENST00000221399	human	ensembl	74_37	-1	known	silent	c.63	p.R21	0.989	prints_Tubby_N	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP2	HGNC	ENSG00000104804				34	0	0	32	7	17.9487
NUCB1	0	genome.wustl.edu	37	19	49425747	49425747	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49425747	49425747	T	C	SNP	NUCB1	ENST00000485798	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NUCB1	HGNC	ENSG00000104805				25	0	0	23	9	28.125
BAX	0	genome.wustl.edu	37	19	49464183	49464183	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49464183	49464183	C	T	SNP	BAX	ENST00000293288	human	ensembl	74_37	+1	known	silent	c.486	p.L162	0.003	NULL	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAX	HGNC	ENSG00000087088				57	0	0	64	24	27.2727
CGB7	0	genome.wustl.edu	37	19	49558136	49558136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49558136	49558136	C	T	SNP	CGB7	ENST00000377280	human	ensembl	74_37	-1	known	missense	c.145	p.V49I	0.994	pfam_Cys_knot,smart_Gonadotropin_bsu	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	CGB7	HGNC	ENSG00000196337				50	0	0	74	19	20.4301
LIN7B	0	genome.wustl.edu	37	19	49619556	49619556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49619556	49619556	G	A	SNP	LIN7B	ENST00000221459	human	ensembl	74_37	+1	known	missense	c.265	p.A89T	1.000	superfamily_PDZ,pirsf_Lin-7_homologue	pfam_PDZ,pfam_L27_C,superfamily_PDZ,smart_L27,smart_PDZ,pirsf_Lin-7_homologue,pfscan_L27,pfscan_PDZ	-	no_errors	LIN7B	HGNC	ENSG00000104863				46	0	0	40	9	18.3673
PPFIA3	0	genome.wustl.edu	37	19	49636603	49636603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49636603	49636603	C	T	SNP	PPFIA3	ENST00000334186	human	ensembl	74_37	+1	known	missense	c.1136	p.A379V	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380				42	0	0	54	31	36.4706
PPFIA3	0	genome.wustl.edu	37	19	49646100	49646100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49646100	49646100	C	T	SNP	PPFIA3	ENST00000334186	human	ensembl	74_37	+1	known	missense	c.2584	p.R862W	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380				102	0	0	133	53	28.4946
TRPM4	0	genome.wustl.edu	37	19	49713993	49713993	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49713993	49713993	C	T	SNP	TRPM4	ENST00000252826	human	ensembl	74_37	+1	known	missense	c.3355	p.R1119W	0.891	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM4	HGNC	ENSG00000130529				40	0	0	45	48	51.6129
SLC6A16	0	genome.wustl.edu	37	19	49812999	49812999	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49812999	49812999	C	T	SNP	SLC6A16	ENST00000335875	human	ensembl	74_37	-1	known	missense	c.785	p.G262E	0.790	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127				62	0	0	43	41	48.8095
RCN3	0	genome.wustl.edu	37	19	50040398	50040398	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50040398	50040398	G	A	SNP	RCN3	ENST00000270645	human	ensembl	74_37	+1	known	missense	c.554	p.R185Q	1.000	pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	RCN3	HGNC	ENSG00000142552				249	0	0	282	23	7.54098
PRR12	0	genome.wustl.edu	37	19	50119005	50119005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50119005	50119005	C	T	SNP	PRR12	ENST00000418929	human	ensembl	74_37	+1	novel	missense	c.5026	p.R1676C	0.826	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464				18	0	0	18	6	25
RRAS	0	genome.wustl.edu	37	19	50143242	50143242	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50143242	50143242	G	A	SNP	RRAS	ENST00000246792	human	ensembl	74_37	-1	known	silent	c.114	p.G38	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RRAS	HGNC	ENSG00000126458				13	0	0	22	7	24.1379
IRF3	0	genome.wustl.edu	37	19	50165361	50165361	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50165361	50165361	G	A	SNP	IRF3	ENST00000309877	human	ensembl	74_37	-1	known	missense	c.826	p.R276W	0.018	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456				89	0	0	72	8	10
IRF3	0	genome.wustl.edu	37	19	50166694	50166694	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50166694	50166694	G	A	SNP	IRF3	ENST00000309877	human	ensembl	74_37	-1	known	silent	c.243	p.R81	0.015	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456				70	0	0	39	54	58.0645
AP2A1	0	genome.wustl.edu	37	19	50304308	50304308	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50304308	50304308	C	T	SNP	AP2A1	ENST00000354293	human	ensembl	74_37	+1	known	missense	c.1546	p.R516C	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A1	HGNC	ENSG00000196961				21	0	0	16	3	15.7895
FUZ	0	genome.wustl.edu	37	19	50314914	50314914	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50314914	50314914	C	T	SNP	FUZ	ENST00000313777	human	ensembl	74_37	-1	known	missense	c.361	p.V121M	0.997	NULL	NULL	-	no_errors	FUZ	HGNC	ENSG00000010361				454	1	0.21978	404	156	27.8571
IL4I1	0	genome.wustl.edu	37	19	50393711	50393711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50393711	50393711	G	A	SNP	IL4I1	ENST00000341114	human	ensembl	74_37	-1	known	missense	c.986	p.A329V	0.001	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_AlaDH/PNT_NAD(H)-bd,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	IL4I1	HGNC	ENSG00000104951				64	0	0	67	16	19.2771
IL4I1	0	genome.wustl.edu	37	19	50393714	50393714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50393714	50393714	G	A	SNP	IL4I1	ENST00000341114	human	ensembl	74_37	-1	known	missense	c.983	p.P328L	0.000	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_AlaDH/PNT_NAD(H)-bd,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	IL4I1	HGNC	ENSG00000104951				65	0	0	59	22	27.1605
NUP62	0	genome.wustl.edu	37	19	50412080	50412080	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50412080	50412080	T	C	SNP	NUP62	ENST00000352066	human	ensembl	74_37	-1	known	missense	c.985	p.T329A	1.000	pfam_Nucleoporin_NSP1_C	pfam_Nucleoporin_NSP1_C	-	no_errors	NUP62	HGNC	ENSG00000213024				132	0	0	158	11	6.50888
MYH14	0	genome.wustl.edu	37	19	50812298	50812298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50812298	50812298	C	T	SNP	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	missense	c.5824	p.R1942W	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357				46	0	0	31	53	63.0952
KCNC3	0	genome.wustl.edu	37	19	50831691	50831691	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50831691	50831691	C	T	SNP	KCNC3	ENST00000477616	human	ensembl	74_37	-1	known	missense	c.649	p.A217T	0.008	prints_K_chnl_volt-dep_Kv3.3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_K_chnl_volt-dep_Kv3_ID,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3.3,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC3	HGNC	ENSG00000131398				14	0	0	7	12	63.1579
POLD1	0	genome.wustl.edu	37	19	50905095	50905095	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50905095	50905095	G	A	SNP	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	missense	c.377	p.R126H	0.960	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822				103	0	0	98	30	23.4375
LRRC4B	0	genome.wustl.edu	37	19	51021093	51021093	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	51021093	51021093	G	A	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.1877	p.A626V	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				40	0	0	60	11	15.493
SHANK1	0	genome.wustl.edu	37	19	51200866	51200866	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	51200866	51200866	G	A	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	silent	c.1917	p.Y639	0.995	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				154	0	0	158	32	16.8421
GPR32	0	genome.wustl.edu	37	19	51274805	51274805	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	51274805	51274805	C	T	SNP	GPR32	ENST00000270590	human	ensembl	74_37	+1	known	silent	c.948	p.Y316	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	GPR32	HGNC	ENSG00000142511				109	0	0	103	25	19.5312
KLK5	0	genome.wustl.edu	37	19	51452165	51452165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	51452165	51452165	G	A	SNP	KLK5	ENST00000336334	human	ensembl	74_37	-1	known	missense	c.542	p.A181V	0.041	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK5	HGNC	ENSG00000167754				84	0	0	80	16	16.6667
KLK12	0	genome.wustl.edu	37	19	51535263	51535263	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	51535263	51535263	A	T	SNP	KLK12	ENST00000250351	human	ensembl	74_37	-1	known	missense	c.326	p.L109H	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK12	HGNC	ENSG00000186474				38	0	0	27	28	50.9091
SIGLEC7	0	genome.wustl.edu	37	19	51645702	51645702	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	51645702	51645702	T	C	SNP	SIGLEC7	ENST00000317643	human	ensembl	74_37	+1	known	missense	c.76	p.Y26H	0.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC7	HGNC	ENSG00000168995				49	0	0	36	9	20
PTPRS	0	genome.wustl.edu	37	19	5215591	5215591	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	5215591	5215591	G	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.4115	p.P1372L	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				79	0	0	34	24	41.3793
PTPRS	0	genome.wustl.edu	37	19	5231469	5231469	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	5231469	5231469	C	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.2010	p.K670N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				54	0	0	50	11	18.0328
ZNF649	0	genome.wustl.edu	37	19	52394603	52394603	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	52394603	52394603	G	A	SNP	ZNF649	ENST00000354957	human	ensembl	74_37	-1	known	silent	c.786	p.Y262	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF649	HGNC	ENSG00000198093				139	1	0.714286	88	32	26.6667
ZNF649	0	genome.wustl.edu	37	19	52399819	52399819	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	52399819	52399819	C	T	SNP	ZNF649	ENST00000354957	human	ensembl	74_37	-1	known	silent	c.144	p.G48	0.094	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF649	HGNC	ENSG00000198093				61	0	0	73	5	6.41026
ZNF615	0	genome.wustl.edu	37	19	52497291	52497291	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	52497291	52497291	A	G	SNP	ZNF615	ENST00000594083	human	ensembl	74_37	-1	known	silent	c.1071	p.C357	0.040	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF615	HGNC	ENSG00000197619				123	0	0	91	38	29.4574
ZNF616	0	genome.wustl.edu	37	19	52618535	52618535	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	52618535	52618535	T	C	SNP	ZNF616	ENST00000600228	human	ensembl	74_37	-1	known	missense	c.1882	p.T628A	0.984	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611				94	0	0	42	38	47.5
ZNF610	0	genome.wustl.edu	37	19	52869661	52869661	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	52869661	52869661	T	C	SNP	ZNF610	ENST00000321287	human	ensembl	74_37	+1	known	missense	c.1030	p.Y344H	0.061	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554				112	0	0	61	23	27.381
ZNF578	0	genome.wustl.edu	37	19	53014345	53014345	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	53014345	53014345	C	T	SNP	ZNF578	ENST00000421239	human	ensembl	74_37	+1	known	silent	c.711	p.G237	0.468	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405				114	0	0	52	69	57.0248
ZNF137P	0	genome.wustl.edu	37	19	53098916	53098916	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	53098916	53098916	T	C	SNP	ZNF137P	ENST00000597158	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF137P	HGNC	ENSG00000123870				89	0	0	82	18	18
ZNF611	0	genome.wustl.edu	37	19	53209776	53209776	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	53209776	53209776	T	C	SNP	ZNF611	ENST00000319783	human	ensembl	74_37	-1	known	missense	c.532	p.N178D	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF611	HGNC	ENSG00000213020				240	0	0	162	59	26.6968
ZNF816	0	genome.wustl.edu	37	19	53454819	53454819	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	53454819	53454819	A	G	SNP	ZNF816	ENST00000357666	human	ensembl	74_37	-1	known	missense	c.209	p.M70T	0.001	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF816	HGNC	ENSG00000180257				108	0	0	83	12	12.6316
ZNF347	0	genome.wustl.edu	37	19	53652530	53652530	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	53652530	53652530	C	T	SNP	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	missense	c.106	p.V36M	0.866	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937				135	0	0	86	103	54.4974
LOC101930624	0	genome.wustl.edu	37	19	53707375	53707375	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	53707375	53707375	A	G	SNP	LOC101930624	ENST00000597550	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.805	-	-	-	no_errors	CTD-2245F17.3	Clone_based_vega_gene	ENSG00000269051				146	0	0	180	65	26.5306
ZNF525	0	genome.wustl.edu	37	19	53884769	53884769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	53884769	53884769	G	A	SNP	ZNF525	ENST00000355326	human	ensembl	74_37	+1	known	missense	c.91	p.A31T	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF525	HGNC	ENSG00000203326				74	0	0	77	26	25.2427
ZNF761	0	genome.wustl.edu	37	19	53958607	53958607	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	53958607	53958607	G	A	SNP	ZNF761	ENST00000334095	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336				217	1	0.458716	214	74	25.6944
ZNF813	0	genome.wustl.edu	37	19	53994405	53994405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	53994405	53994405	G	A	SNP	ZNF813	ENST00000396403	human	ensembl	74_37	+1	known	missense	c.919	p.A307T	0.391	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF813	HGNC	ENSG00000198346				107	0	0	111	7	5.9322
MIR1283-2	0	genome.wustl.edu	37	19	54261544	54261544	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	54261544	54261544	C	T	SNP	MIR1283-2	ENST00000408621	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MIR1283-2	HGNC	ENSG00000221548				112	0	0	64	85	57.047
MIR371B	0	genome.wustl.edu	37	19	54290899	54290899	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	54290899	54290899	G	A	SNP	MIR371B	ENST00000595160	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR371B	HGNC	ENSG00000269877				66	0	0	45	25	35.7143
CACNG8	0	genome.wustl.edu	37	19	54466598	54466598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	54466598	54466598	C	T	SNP	CACNG8	ENST00000270458	human	ensembl	74_37	+1	known	missense	c.202	p.R68C	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g8su,prints_Claudin	-	no_errors	CACNG8	HGNC	ENSG00000142408				36	0	0	37	25	40.3226
ZNRF4	0	genome.wustl.edu	37	19	5455562	5455562	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	5455562	5455562	G	A	SNP	ZNRF4	ENST00000222033	human	ensembl	74_37	+1	known	silent	c.60	p.A20	0.000	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428				60	0	0	29	25	46.2963
ZNRF4	0	genome.wustl.edu	37	19	5455855	5455855	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	5455855	5455855	C	T	SNP	ZNRF4	ENST00000222033	human	ensembl	74_37	+1	known	missense	c.353	p.A118V	0.757	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	ZNRF4	HGNC	ENSG00000105428				126	0	0	91	38	29.4574
PRPF31	0	genome.wustl.edu	37	19	54634837	54634837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	54634837	54634837	G	A	SNP	PRPF31	ENST00000321030	human	ensembl	74_37	+1	known	missense	c.1474	p.E492K	0.996	NULL	pfam_Nop_dom,pfam_Prp31_C,pfam_NOSIC,smart_NOSIC	-	no_errors	PRPF31	HGNC	ENSG00000105618				47	0	0	37	15	28.8462
LILRB5	0	genome.wustl.edu	37	19	54758829	54758829	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	54758829	54758829	G	T	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	missense	c.997	p.L333M	0.162	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				70	0	0	34	39	53.4247
LILRB1	0	genome.wustl.edu	37	19	55143558	55143558	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	55143558	55143558	G	A	SNP	LILRB1	ENST00000324602	human	ensembl	74_37	+1	known	silent	c.531	p.S177	0.000	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB1	HGNC	ENSG00000104972				177	0	0	198	39	16.4557
LILRB1	0	genome.wustl.edu	37	19	55146567	55146567	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	55146567	55146567	C	A	SNP	LILRB1	ENST00000324602	human	ensembl	74_37	+1	known	missense	c.1499	p.A500D	0.033	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB1	HGNC	ENSG00000104972				29	0	0	35	13	27.0833
KIR3DL1	0	genome.wustl.edu	37	19	55333226	55333226	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	55333226	55333226	G	T	SNP	KIR3DL1	ENST00000402254	human	ensembl	74_37	+1	known	nonsense	c.862	p.G288*	0.000	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL1	HGNC	ENSG00000167633				22	0	0	18	5	21.7391
FCAR	0	genome.wustl.edu	37	19	55401040	55401040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	55401040	55401040	G	A	SNP	FCAR	ENST00000391723	human	ensembl	74_37	+1	known	missense	c.565	p.A189T	0.000	NULL	NULL	-	no_errors	FCAR	HGNC	ENSG00000186431				541	0	0	597	175	22.6684
PPP6R1	0	genome.wustl.edu	37	19	55758268	55758268	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	55758268	55758268	G	A	SNP	PPP6R1	ENST00000412770	human	ensembl	74_37	-1	known	silent	c.204	p.S68	0.047	NULL	pfam_SAPS,superfamily_ARM-type_fold	-	no_errors	PPP6R1	HGNC	ENSG00000105063				29	0	0	17	22	56.4103
ZNF628	0	genome.wustl.edu	37	19	55994827	55994827	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	55994827	55994827	G	A	SNP	ZNF628	ENST00000598519	human	ensembl	74_37	+1	known	missense	c.2267	p.R756H	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483				13	0	0	13	8	38.0952
ZNF865	0	genome.wustl.edu	37	19	56125978	56125978	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	56125978	56125978	G	A	SNP	ZNF865	ENST00000568956	human	ensembl	74_37	+1	novel	missense	c.994	p.A332T	0.010	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF865	HGNC	ENSG00000261221				9	0	0	11	6	35.2941
CCDC106	0	genome.wustl.edu	37	19	56160817	56160817	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	56160817	56160817	C	T	SNP	CCDC106	ENST00000308964	human	ensembl	74_37	+1	known	silent	c.180	p.S60	0.954	NULL	NULL	-	no_errors	CCDC106	HGNC	ENSG00000173581				67	0	0	33	34	50.7463
NLRP13	0	genome.wustl.edu	37	19	56424302	56424302	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	56424302	56424302	G	A	SNP	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	missense	c.881	p.A294V	0.000	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572				93	0	0	98	25	20.3252
ZNF787	0	genome.wustl.edu	37	19	56600379	56600379	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	56600379	56600379	G	A	SNP	ZNF787	ENST00000270459	human	ensembl	74_37	-1	known	silent	c.162	p.A54	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF787	HGNC	ENSG00000142409				13	0	0	15	6	28.5714
ZNF667	0	genome.wustl.edu	37	19	56952902	56952902	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	56952902	56952902	G	A	SNP	ZNF667	ENST00000342634	human	ensembl	74_37	-1	known	nonsense	c.1846	p.R616*	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF667	HGNC	ENSG00000198046				59	0	0	44	19	30.1587
ZFP28	0	genome.wustl.edu	37	19	57065374	57065374	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	57065374	57065374	T	C	SNP	ZFP28	ENST00000301318	human	ensembl	74_37	+1	known	missense	c.1220	p.V407A	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867				109	0	0	88	21	19.2661
ZFP28	0	genome.wustl.edu	37	19	57065512	57065512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	57065512	57065512	G	A	SNP	ZFP28	ENST00000301318	human	ensembl	74_37	+1	known	missense	c.1358	p.C453Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867				87	0	0	110	7	5.98291
PEG3	0	genome.wustl.edu	37	19	57327157	57327157	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	57327157	57327157	C	A	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.2653	p.G885C	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				99	0	0	76	8	9.52381
PRR22	0	genome.wustl.edu	37	19	5783603	5783603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	5783603	5783603	C	T	SNP	PRR22	ENST00000419421	human	ensembl	74_37	-1	known	missense	c.655	p.G219S	0.220	NULL	NULL	-	no_errors	PRR22	HGNC	ENSG00000212123				12	0	0	13	7	35
DUS3L	0	genome.wustl.edu	37	19	5785436	5785436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	5785436	5785436	G	A	SNP	DUS3L	ENST00000309061	human	ensembl	74_37	-1	known	missense	c.1838	p.T613M	0.971	NULL	pfam_tRNA_hU_synthase	-	no_errors	DUS3L	HGNC	ENSG00000141994				21	0	0	12	7	36.8421
DUS3L	0	genome.wustl.edu	37	19	5787151	5787151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	5787151	5787151	C	T	SNP	DUS3L	ENST00000309061	human	ensembl	74_37	-1	known	missense	c.1310	p.R437H	1.000	pfam_tRNA_hU_synthase	pfam_tRNA_hU_synthase	-	no_errors	DUS3L	HGNC	ENSG00000141994				8	0	0	5	4	44.4444
TRAPPC2P1	0	genome.wustl.edu	37	19	57876433	57876433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	57876433	57876433	G	A	SNP	TRAPPC2P1	ENST00000543226	human	ensembl	74_37	+1	putative	missense	c.232	p.A78T	1.000	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC2P1	HGNC	ENSG00000256060				29	0	0	31	4	11.4286
ZNF17	0	genome.wustl.edu	37	19	57932053	57932053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	57932053	57932053	G	A	SNP	ZNF17	ENST00000601808	human	ensembl	74_37	+1	known	missense	c.1193	p.R398H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF17	HGNC	ENSG00000186272				153	0	0	133	8	5.67376
ZNF749	0	genome.wustl.edu	37	19	57956001	57956001	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	57956001	57956001	G	T	SNP	ZNF749	ENST00000334181	human	ensembl	74_37	+1	known	missense	c.1485	p.Q495H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF749	HGNC	ENSG00000186230				74	0	0	78	18	18.75
ZNF419	0	genome.wustl.edu	37	19	58005046	58005046	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	58005046	58005046	G	T	SNP	ZNF419	ENST00000424930	human	ensembl	74_37	+1	known	missense	c.1124	p.S375I	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF419	HGNC	ENSG00000105136				133	0	0	63	71	52.9851
ZNF154	0	genome.wustl.edu	37	19	58213466	58213466	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	58213466	58213466	T	C	SNP	ZNF154	ENST00000426889	human	ensembl	74_37	-1	known	missense	c.851	p.Y284C	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF154	HGNC	ENSG00000179909				99	0	0	53	70	56.9106
ZNF587	0	genome.wustl.edu	37	19	58371388	58371388	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	58371388	58371388	T	C	SNP	ZNF587	ENST00000339656	human	ensembl	74_37	+1	known	silent	c.1608	p.I536	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466				159	0	0	113	39	25.6579
ZNF256	0	genome.wustl.edu	37	19	58453484	58453484	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	58453484	58453484	C	A	SNP	ZNF256	ENST00000282308	human	ensembl	74_37	-1	known	missense	c.692	p.G231V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF256	HGNC	ENSG00000152454				173	0	0	141	14	9.03226
FUT5	0	genome.wustl.edu	37	19	5867333	5867333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	5867333	5867333	G	A	SNP	FUT5	ENST00000252675	human	ensembl	74_37	-1	known	missense	c.404	p.P135L	0.703	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT5	HGNC	ENSG00000130383				76	0	0	60	40	40
ZNF497	0	genome.wustl.edu	37	19	58868129	58868129	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	58868129	58868129	C	T	SNP	ZNF497	ENST00000311044	human	ensembl	74_37	-1	known	silent	c.873	p.Q291	0.182	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF497	HGNC	ENSG00000174586				11	0	0	13	8	38.0952
RANBP3	0	genome.wustl.edu	37	19	5917974	5917974	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	5917974	5917974	T	C	SNP	RANBP3	ENST00000340578	human	ensembl	74_37	-1	known	silent	c.1491	p.T497	0.075	pfam_Ran_bind_dom,smart_Ran_bind_dom	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823				104	0	0	59	40	40.404
HCN2	0	genome.wustl.edu	37	19	610372	610372	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	610372	610372	C	T	SNP	HCN2	ENST00000251287	human	ensembl	74_37	+1	known	silent	c.1551	p.S517	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822				192	0	0	122	100	45.045
MLLT1	0	genome.wustl.edu	37	19	6216430	6216430	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	6216430	6216430	C	T	SNP	MLLT1	ENST00000252674	human	ensembl	74_37	-1	known	silent	c.1293	p.P431	0.425	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT1	HGNC	ENSG00000130382				14	0	0	13	9	40.9091
MLLT1	0	genome.wustl.edu	37	19	6222213	6222213	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	6222213	6222213	G	A	SNP	MLLT1	ENST00000252674	human	ensembl	74_37	-1	known	silent	c.1029	p.A343	0.030	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT1	HGNC	ENSG00000130382				27	0	0	20	8	28.5714
MLLT1	0	genome.wustl.edu	37	19	6270614	6270614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	6270614	6270614	C	T	SNP	MLLT1	ENST00000252674	human	ensembl	74_37	-1	known	missense	c.169	p.D57N	1.000	pfam_YEATS,pfscan_YEATS	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT1	HGNC	ENSG00000130382				54	0	0	33	18	35.2941
GTF2F1	0	genome.wustl.edu	37	19	6380696	6380696	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	6380696	6380696	G	A	SNP	GTF2F1	ENST00000394456	human	ensembl	74_37	-1	known	missense	c.1237	p.R413W	1.000	pfam_TFIIF-alpha	pfam_TFIIF-alpha,superfamily_TFIIF_interaction	-	no_errors	GTF2F1	HGNC	ENSG00000125651				66	0	0	31	5	13.8889
DENND1C	0	genome.wustl.edu	37	19	6468317	6468317	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	6468317	6468317	G	A	SNP	DENND1C	ENST00000381480	human	ensembl	74_37	-1	known	silent	c.1719	p.S573	0.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744				34	0	0	26	4	13.3333
TUBB4A	0	genome.wustl.edu	37	19	6495185	6495185	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	6495185	6495185	T	A	SNP	TUBB4A	ENST00000264071	human	ensembl	74_37	-1	known	missense	c.1325	p.E442V	1.000	NULL	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Alpha_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin	-	no_errors	TUBB4A	HGNC	ENSG00000104833				107	0	0	60	45	42.8571
GPR108	0	genome.wustl.edu	37	19	6732167	6732167	+	Splice_Site	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	6732167	6732167	C	A	SNP	GPR108	ENST00000264080	human	ensembl	74_37	-1	known	splice_site	c.1126-1	e13-1	1.000	-	-	-	no_errors	GPR108	HGNC	ENSG00000125734				66	0	0	43	16	27.1186
HNRNPM	0	genome.wustl.edu	37	19	8553846	8553846	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	8553846	8553846	T	C	SNP	HNRNPM	ENST00000602219	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HNRNPM	HGNC	ENSG00000099783				21	0	0	10	2	16.6667
ADAMTS10	0	genome.wustl.edu	37	19	8661959	8661959	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	8661959	8661959	G	A	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	nonsense	c.952	p.Q318*	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				102	0	0	75	43	36.4407
MED16	0	genome.wustl.edu	37	19	876999	876999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	876999	876999	G	A	SNP	MED16	ENST00000325464	human	ensembl	74_37	-1	known	missense	c.1535	p.T512M	1.000	pfam_Mediator_Med16	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221				49	0	0	24	15	38.4615
MUC16	0	genome.wustl.edu	37	19	8999048	8999048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	8999048	8999048	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.40796	p.R13599Q	0.000	smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				26	0	0	29	21	42
MUC16	0	genome.wustl.edu	37	19	9049229	9049229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	9049229	9049229	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.32402	p.A10801V	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				194	0	0	70	40	36.3636
MUC16	0	genome.wustl.edu	37	19	9075091	9075091	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	9075091	9075091	T	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.12355	p.T4119S	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				81	0	0	57	5	8.06452
ZNF317	0	genome.wustl.edu	37	19	9272105	9272105	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	9272105	9272105	A	G	SNP	ZNF317	ENST00000247956	human	ensembl	74_37	+1	known	missense	c.1784	p.Q595R	0.877	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF317	HGNC	ENSG00000130803				95	0	0	75	7	8.53659
PIN1	0	genome.wustl.edu	37	19	9958805	9958805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	9958805	9958805	C	T	SNP	PIN1	ENST00000247970	human	ensembl	74_37	+1	known	missense	c.371	p.A124V	1.000	pfam_PPIase_PpiC,pfscan_PPIase_PpiC	pfam_PPIase_PpiC,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom,pfscan_PPIase_PpiC	-	no_errors	PIN1	HGNC	ENSG00000127445				47	0	0	27	13	32.5
EIF5B	0	genome.wustl.edu	37	2	100009432	100009432	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	100009432	100009432	C	T	SNP	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	silent	c.2751	p.N917	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				56	0	0	26	6	18.75
AFF3	0	genome.wustl.edu	37	2	100210468	100210468	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	100210468	100210468	G	A	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	missense	c.1730	p.A577V	0.769	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				127	0	0	86	8	8.51064
CNOT11	0	genome.wustl.edu	37	2	101869670	101869670	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	101869670	101869670	G	A	SNP	CNOT11	ENST00000289382	human	ensembl	74_37	+1	known	missense	c.244	p.G82S	1.000	NULL	pfam_DUF2363	-	no_errors	CNOT11	HGNC	ENSG00000158435				19	0	0	15	12	44.4444
SLC9A4	0	genome.wustl.edu	37	2	103125352	103125352	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	103125352	103125352	C	A	SNP	SLC9A4	ENST00000295269	human	ensembl	74_37	+1	known	missense	c.1448	p.T483N	1.000	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251				103	0	0	73	7	8.75
ODC1	0	genome.wustl.edu	37	2	10581970	10581970	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	10581970	10581970	G	A	SNP	ODC1	ENST00000234111	human	ensembl	74_37	-1	known	silent	c.999	p.H333	0.978	pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	ODC1	HGNC	ENSG00000115758				154	0	0	61	26	29.8851
ST6GAL2	0	genome.wustl.edu	37	2	107459975	107459975	+	Silent	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	107459975	107459975	G	C	SNP	ST6GAL2	ENST00000361686	human	ensembl	74_37	-1	known	silent	c.459	p.P153	0.000	NULL	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	-	no_errors	ST6GAL2	HGNC	ENSG00000144057				221	1	0.45045	142	50	26.0417
SLC5A7	0	genome.wustl.edu	37	2	108627289	108627289	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	108627289	108627289	G	T	SNP	SLC5A7	ENST00000264047	human	ensembl	74_37	+1	known	missense	c.1715	p.G572V	0.105	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665				58	0	0	22	9	29.0323
SULT1C3	0	genome.wustl.edu	37	2	108863760	108863760	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	108863760	108863760	A	G	SNP	SULT1C3	ENST00000329106	human	ensembl	74_37	+1	known	missense	c.110	p.E37G	0.119	superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1C3	HGNC	ENSG00000196228				98	0	0	37	39	51.3158
SULT1C2	0	genome.wustl.edu	37	2	108917317	108917317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	108917317	108917317	C	T	SNP	SULT1C2	ENST00000251481	human	ensembl	74_37	+1	known	missense	c.301	p.P101S	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1C2	HGNC	ENSG00000198203				103	1	0.961538	51	24	32
MALL	0	genome.wustl.edu	37	2	110849315	110849315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	110849315	110849315	G	A	SNP	MALL	ENST00000424988	human	ensembl	74_37	-1	known	missense	c.244	p.R82C	0.673	NULL	NULL	-	no_errors	MALL	HGNC	ENSG00000144063				104	0	0	64	15	18.9873
ROCK2	0	genome.wustl.edu	37	2	11333908	11333908	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	11333908	11333908	G	C	SNP	ROCK2	ENST00000315872	human	ensembl	74_37	-1	known	missense	c.3684	p.F1228L	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology	pfam_Prot_kinase_dom,pfam_Rho-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318				48	0	0	21	2	8.69565
PSD4	0	genome.wustl.edu	37	2	113940629	113940629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	113940629	113940629	C	T	SNP	PSD4	ENST00000245796	human	ensembl	74_37	+1	known	missense	c.596	p.T199M	0.000	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD4	HGNC	ENSG00000125637				51	0	0	43	18	29.5082
PSD4	0	genome.wustl.edu	37	2	113950909	113950909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	113950909	113950909	G	A	SNP	PSD4	ENST00000245796	human	ensembl	74_37	+1	known	missense	c.1994	p.R665H	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD4	HGNC	ENSG00000125637				79	0	0	35	30	46.1538
STEAP3	0	genome.wustl.edu	37	2	120020822	120020822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	120020822	120020822	G	A	SNP	STEAP3	ENST00000393110	human	ensembl	74_37	+1	known	missense	c.1405	p.A469T	0.000	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP3	HGNC	ENSG00000115107				65	0	0	51	33	39.2857
INHBB	0	genome.wustl.edu	37	2	121107172	121107172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	121107172	121107172	G	A	SNP	INHBB	ENST00000295228	human	ensembl	74_37	+1	known	missense	c.946	p.G316S	1.000	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaB,prints_Inhibin_asu	-	no_errors	INHBB	HGNC	ENSG00000163083				124	0	0	150	8	5.06329
GLI2	0	genome.wustl.edu	37	2	121728140	121728140	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	121728140	121728140	C	T	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	silent	c.1017	p.T339	0.962	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				71	0	0	39	28	41.791
BIN1	0	genome.wustl.edu	37	2	127821515	127821515	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	127821515	127821515	C	T	SNP	BIN1	ENST00000316724	human	ensembl	74_37	-1	known	nonsense	c.692	p.W231*	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_2,prints_SH3_domain	-	no_errors	BIN1	HGNC	ENSG00000136717				76	0	0	70	18	20.4545
SAP130	0	genome.wustl.edu	37	2	128770681	128770681	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	128770681	128770681	G	A	SNP	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	silent	c.745	p.L249	1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715				49	0	0	33	21	38.8889
SAP130	0	genome.wustl.edu	37	2	128772415	128772415	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	128772415	128772415	C	A	SNP	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	missense	c.659	p.G220V	1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715				59	0	0	35	10	22.2222
UGGT1	0	genome.wustl.edu	37	2	128886646	128886646	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	128886646	128886646	C	T	SNP	UGGT1	ENST00000259253	human	ensembl	74_37	+1	known	silent	c.1270	p.L424	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731				102	0	0	30	33	52.381
POTEF	0	genome.wustl.edu	37	2	130832165	130832165	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	130832165	130832165	C	T	SNP	POTEF	ENST00000357462	human	ensembl	74_37	-1	known	silent	c.2880	p.A960	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEF	HGNC	ENSG00000196604				34	0	0	20	5	20
TUBA3E	0	genome.wustl.edu	37	2	130951632	130951632	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	130951632	130951632	C	T	SNP	TUBA3E	ENST00000312988	human	ensembl	74_37	-1	known	silent	c.783	p.P261	0.905	superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086				203	0	0	119	74	38.342
GPR148	0	genome.wustl.edu	37	2	131487357	131487357	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	131487357	131487357	G	A	SNP	GPR148	ENST00000309926	human	ensembl	74_37	+1	known	silent	c.633	p.P211	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR148	HGNC	ENSG00000173302				131	0	0	62	48	43.6364
POTEE	0	genome.wustl.edu	37	2	131976372	131976372	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	131976372	131976372	T	C	SNP	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	missense	c.397	p.Y133H	0.012	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219				161	0	0	120	13	9.77444
ENSG00000229203	0	genome.wustl.edu	37	2	132587699	132587699	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	132587699	132587699	G	A	SNP	ENSG00000229203	ENST00000437330	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC103564.7	Clone_based_vega_gene	ENSG00000229203				16	0	0	8	5	38.4615
MIR663B	0	genome.wustl.edu	37	2	133014554	133014554	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	133014554	133014554	G	T	SNP	MIR663B	ENST00000408361	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	MIR663B	HGNC	ENSG00000221288				47	0	0	61	8	11.5942
MGAT5	0	genome.wustl.edu	37	2	135206337	135206337	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	135206337	135206337	C	T	SNP	MGAT5	ENST00000281923	human	ensembl	74_37	+1	known	silent	c.2145	p.G715	0.151	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127				106	0	0	84	5	5.61798
ACMSD	0	genome.wustl.edu	37	2	135621077	135621077	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	135621077	135621077	C	T	SNP	ACMSD	ENST00000356140	human	ensembl	74_37	+1	known	missense	c.362	p.A121V	1.000	pfam_Amidohydro_2	pfam_Amidohydro_2	-	no_errors	ACMSD	HGNC	ENSG00000153086				86	0	0	46	39	45.8824
RAB3GAP1	0	genome.wustl.edu	37	2	135848616	135848616	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	135848616	135848616	T	C	SNP	RAB3GAP1	ENST00000264158	human	ensembl	74_37	+1	known	missense	c.199	p.F67L	1.000	NULL	NULL	-	no_errors	RAB3GAP1	HGNC	ENSG00000115839				119	0	0	33	18	35.2941
MCM6	0	genome.wustl.edu	37	2	136620237	136620237	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	136620237	136620237	C	T	SNP	MCM6	ENST00000264156	human	ensembl	74_37	-1	known	missense	c.1160	p.R387Q	1.000	pfam_MCM_DNA-dep_ATPase,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM6,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM6	HGNC	ENSG00000076003				122	0	0	72	29	28.7129
LRP1B	0	genome.wustl.edu	37	2	141260673	141260673	+	Splice_Site	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	141260673	141260673	C	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	splice_site	c.8522-1	e54-1	1.000	-	-	-	no_errors	LRP1B	HGNC	ENSG00000168702				72	0	0	20	12	37.5
LRP1B	0	genome.wustl.edu	37	2	141609292	141609292	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	141609292	141609292	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.4640	p.N1547S	1.000	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				115	0	0	52	35	40.2299
LRP1B	0	genome.wustl.edu	37	2	141946087	141946087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	141946087	141946087	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.916	p.R306W	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				75	0	0	17	12	41.3793
ENSG00000212181	0	genome.wustl.edu	37	2	149018184	149018184	+	RNA	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	149018184	149018184	A	T	SNP	ENSG00000212181	ENST00000390879	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA48	RFAM	ENSG00000212181				23	0	0	15	9	37.5
MBD5	0	genome.wustl.edu	37	2	149227817	149227817	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	149227817	149227817	G	A	SNP	MBD5	ENST00000407073	human	ensembl	74_37	+1	known	missense	c.2305	p.V769I	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP_dom	-	no_errors	MBD5	HGNC	ENSG00000204406				146	0	0	55	49	47.1154
MBD5	0	genome.wustl.edu	37	2	149247420	149247420	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	149247420	149247420	A	G	SNP	MBD5	ENST00000407073	human	ensembl	74_37	+1	known	missense	c.3520	p.K1174E	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP_dom	-	no_errors	MBD5	HGNC	ENSG00000204406				103	0	0	48	40	45.4545
NEB	0	genome.wustl.edu	37	2	152500374	152500374	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	152500374	152500374	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.7914	p.S2638	0.025	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				292	0	0	127	96	43.0493
GALNT13	0	genome.wustl.edu	37	2	155157975	155157975	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	155157975	155157975	T	C	SNP	GALNT13	ENST00000409237	human	ensembl	74_37	+1	known	silent	c.1029	p.H343	0.900	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278				231	0	0	58	57	49.5652
CCDC148	0	genome.wustl.edu	37	2	159313006	159313006	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	159313006	159313006	A	G	SNP	CCDC148	ENST00000491563	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.598	-	-	-	no_errors	CCDC148	HGNC	ENSG00000153237				16	0	0	7	6	46.1538
TANC1	0	genome.wustl.edu	37	2	160086261	160086261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	160086261	160086261	G	A	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	missense	c.4324	p.E1442K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				151	1	0.657895	95	54	36.2416
LY75	0	genome.wustl.edu	37	2	160676263	160676263	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	160676263	160676263	C	A	SNP	LY75	ENST00000554112	human	ensembl	74_37	-1	known	missense	c.4127	p.S1376I	1.000	smart_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219				132	0	0	41	26	38.806
LY75	0	genome.wustl.edu	37	2	160734894	160734894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	160734894	160734894	G	A	SNP	LY75	ENST00000554112	human	ensembl	74_37	-1	known	missense	c.1715	p.A572V	0.995	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219				118	0	0	62	27	30.3371
TBR1	0	genome.wustl.edu	37	2	162275407	162275407	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	162275407	162275407	T	A	SNP	TBR1	ENST00000389554	human	ensembl	74_37	+1	known	missense	c.974	p.V325E	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBR1	HGNC	ENSG00000136535				106	0	0	54	45	45.4545
TBR1	0	genome.wustl.edu	37	2	162280648	162280648	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	162280648	162280648	G	A	SNP	TBR1	ENST00000389554	human	ensembl	74_37	+1	known	silent	c.1959	p.P653	0.961	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBR1	HGNC	ENSG00000136535				24	0	0	8	10	55.5556
SLC38A11	0	genome.wustl.edu	37	2	165755181	165755181	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	165755181	165755181	C	T	SNP	SLC38A11	ENST00000409149	human	ensembl	74_37	-1	known	silent	c.987	p.L329	0.998	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A11	HGNC	ENSG00000169507				59	0	0	39	18	31.5789
SCN2A	0	genome.wustl.edu	37	2	166165865	166165865	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	166165865	166165865	T	C	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	silent	c.609	p.Y203	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				57	0	0	26	21	44.6809
SCN2A	0	genome.wustl.edu	37	2	166246013	166246013	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	166246013	166246013	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	silent	c.5697	p.T1899	0.472	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				72	0	0	33	20	37.7358
SCN7A	0	genome.wustl.edu	37	2	167262953	167262953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	167262953	167262953	C	T	SNP	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	missense	c.4186	p.V1396I	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546				130	0	0	42	27	39.1304
CERS6	0	genome.wustl.edu	37	2	169417819	169417819	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	169417819	169417819	T	C	SNP	CERS6	ENST00000392687	human	ensembl	74_37	+1	known	missense	c.394	p.F132L	1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS6	HGNC	ENSG00000172292				118	0	0	70	46	39.6552
ABCB11	0	genome.wustl.edu	37	2	169781256	169781256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	169781256	169781256	G	A	SNP	ABCB11	ENST00000263817	human	ensembl	74_37	-1	known	missense	c.3676	p.R1226C	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB11	HGNC	ENSG00000073734				104	0	0	63	6	8.69565
LRP2	0	genome.wustl.edu	37	2	170135979	170135979	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	170135979	170135979	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.1468	p.R490C	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				126	0	0	42	18	30
KLHL41	0	genome.wustl.edu	37	2	170366496	170366496	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	170366496	170366496	A	G	SNP	KLHL41	ENST00000284669	human	ensembl	74_37	+1	known	missense	c.208	p.K70E	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL41	HGNC	ENSG00000239474				198	1	0.502513	124	14	10.1449
KLHL41	0	genome.wustl.edu	37	2	170367065	170367065	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	170367065	170367065	C	T	SNP	KLHL41	ENST00000284669	human	ensembl	74_37	+1	known	silent	c.777	p.F259	0.989	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL41	HGNC	ENSG00000239474				107	0	0	68	48	41.3793
PHOSPHO2	0	genome.wustl.edu	37	2	170557504	170557504	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	170557504	170557504	A	G	SNP	PHOSPHO2	ENST00000359744	human	ensembl	74_37	+1	known	missense	c.23	p.D8G	1.000	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel,tigrfam_HAD-SF_hydro_IB_PSP-like	pfam_Pase_PHOSPHO-typ,superfamily_HAD-like_dom,pirsf_Pase_PHOSPHO-typ,tigrfam_PyrdxlP_Pase-rel,tigrfam_HAD-SF_hydro_IB_PSP-like	-	no_errors	PHOSPHO2	HGNC	ENSG00000144362				74	0	0	23	9	28.125
HOXD10	0	genome.wustl.edu	37	2	176974001	176974001	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	176974001	176974001	C	T	SNP	HOXD10	ENST00000490088	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	HOXD10	HGNC	ENSG00000128710				14	0	0	12	11	47.8261
HOXD9	0	genome.wustl.edu	37	2	176987530	176987530	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	176987530	176987530	T	A	SNP	HOXD9	ENST00000249499	human	ensembl	74_37	+1	known	missense	c.34	p.S12T	1.000	pfam_Hox9_activation_N,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Hox9,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD9	HGNC	ENSG00000128709				37	0	0	37	7	15.9091
TTC30A	0	genome.wustl.edu	37	2	178482964	178482964	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	178482964	178482964	C	A	SNP	TTC30A	ENST00000355689	human	ensembl	74_37	-1	known	missense	c.466	p.G156C	0.998	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30A	HGNC	ENSG00000197557				177	0	0	106	59	35.7576
PLEKHA3	0	genome.wustl.edu	37	2	179355475	179355475	+	Silent	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	179355475	179355475	A	C	SNP	PLEKHA3	ENST00000234453	human	ensembl	74_37	+1	known	silent	c.247	p.R83	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA3	HGNC	ENSG00000116095				30	0	0	12	10	45.4545
TTN-AS1	0	genome.wustl.edu	37	2	179403573	179403573	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	179403573	179403573	T	C	SNP	TTN-AS1	ENST00000415561	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.420	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				82	0	0	28	19	40.4255
TTN	0	genome.wustl.edu	37	2	179438111	179438111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	179438111	179438111	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.65044	p.G21682S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				81	0	0	63	4	5.97015
TTN	0	genome.wustl.edu	37	2	179458084	179458084	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	179458084	179458084	C	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.51147	p.K17049N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				138	0	0	49	43	46.7391
TTN	0	genome.wustl.edu	37	2	179459139	179459139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	179459139	179459139	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.50378	p.A16793V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				86	0	0	46	35	43.2099
TTN	0	genome.wustl.edu	37	2	179484491	179484491	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	179484491	179484491	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.38849	p.V12950A	0.989	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				162	0	0	75	37	33.0357
TTN	0	genome.wustl.edu	37	2	179500703	179500703	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	179500703	179500703	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.33891	p.C11297	0.376	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				130	0	0	62	26	29.5455
TTN	0	genome.wustl.edu	37	2	179605004	179605004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	179605004	179605004	G	A	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.12443	p.A4148V	1.000	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				94	0	0	57	4	6.55738
ITGAV	0	genome.wustl.edu	37	2	187533573	187533573	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	187533573	187533573	T	C	SNP	ITGAV	ENST00000261023	human	ensembl	74_37	+1	known	missense	c.2518	p.Y840H	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGAV	HGNC	ENSG00000138448				77	0	0	43	21	32.8125
ZSWIM2	0	genome.wustl.edu	37	2	187703885	187703885	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	187703885	187703885	G	T	SNP	ZSWIM2	ENST00000295131	human	ensembl	74_37	-1	known	missense	c.295	p.L99M	0.965	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012				143	0	0	88	9	9.27835
ANKAR	0	genome.wustl.edu	37	2	190557866	190557866	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	190557866	190557866	T	C	SNP	ANKAR	ENST00000313581	human	ensembl	74_37	+1	known	missense	c.1270	p.Y424H	0.987	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687				75	0	0	34	14	29.1667
GLS	0	genome.wustl.edu	37	2	191819482	191819482	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	191819482	191819482	T	C	SNP	GLS	ENST00000320717	human	ensembl	74_37	+1	known	silent	c.1791	p.G597	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Glutaminase,pfam_Ankyrin_rpt,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_Glutaminase	-	no_errors	GLS	HGNC	ENSG00000115419				72	0	0	25	16	39.0244
SDPR	0	genome.wustl.edu	37	2	192700726	192700726	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	192700726	192700726	G	A	SNP	SDPR	ENST00000304141	human	ensembl	74_37	-1	known	silent	c.1201	p.L401	0.000	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497				125	0	0	96	12	11.1111
DNAH7	0	genome.wustl.edu	37	2	196753019	196753019	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	196753019	196753019	A	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.5369	p.V1790D	0.986	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				38	0	0	9	10	52.6316
SF3B1	0	genome.wustl.edu	37	2	198285196	198285196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	198285196	198285196	C	T	SNP	SF3B1	ENST00000335508	human	ensembl	74_37	-1	known	missense	c.371	p.R124Q	1.000	NULL	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524				119	0	0	86	5	5.49451
MOB4	0	genome.wustl.edu	37	2	198405143	198405143	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	198405143	198405143	T	C	SNP	MOB4	ENST00000323303	human	ensembl	74_37	+1	known	silent	c.336	p.A112	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB4	HGNC	ENSG00000115540				50	0	0	25	3	10.7143
SATB2	0	genome.wustl.edu	37	2	200137088	200137088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	200137088	200137088	G	A	SNP	SATB2	ENST00000260926	human	ensembl	74_37	-1	known	missense	c.2048	p.A683V	0.987	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042				157	0	0	72	44	37.931
WDR35	0	genome.wustl.edu	37	2	20188933	20188933	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	20188933	20188933	C	T	SNP	WDR35	ENST00000345530	human	ensembl	74_37	-1	known	silent	c.135	p.T45	0.874	pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965				116	0	0	77	6	7.22892
CASP8	0	genome.wustl.edu	37	2	202131222	202131222	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	202131222	202131222	A	G	SNP	CASP8	ENST00000358485	human	ensembl	74_37	+1	known	missense	c.190	p.R64G	0.000	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	pfam_DED,pfam_Pept_C14_caspase,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP8	HGNC	ENSG00000064012				67	0	0	37	22	37.2881
TMEM237	0	genome.wustl.edu	37	2	202498046	202498046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	202498046	202498046	C	T	SNP	TMEM237	ENST00000409883	human	ensembl	74_37	-1	known	missense	c.383	p.R128Q	1.000	NULL	NULL	-	no_errors	TMEM237	HGNC	ENSG00000155755				10	0	0	5	5	50
MPP4	0	genome.wustl.edu	37	2	202510002	202510002	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	202510002	202510002	T	C	SNP	MPP4	ENST00000359962	human	ensembl	74_37	-1	known	missense	c.1845	p.I615M	0.681	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_PDZ,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP4	HGNC	ENSG00000082126				59	0	0	43	21	32.8125
CRYGB	0	genome.wustl.edu	37	2	209007411	209007411	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	209007411	209007411	G	A	SNP	CRYGB	ENST00000260988	human	ensembl	74_37	-1	known	missense	c.479	p.A160V	0.946	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,prints_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	-	no_errors	CRYGB	HGNC	ENSG00000182187				139	0	0	69	38	35.514
IDH1	0	genome.wustl.edu	37	2	209110079	209110079	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	209110079	209110079	T	C	SNP	IDH1	ENST00000345146	human	ensembl	74_37	-1	known	missense	c.484	p.T162A	0.055	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	-	no_errors	IDH1	HGNC	ENSG00000138413				125	0	0	45	20	30.7692
PIKFYVE	0	genome.wustl.edu	37	2	209204275	209204275	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	209204275	209204275	C	T	SNP	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	silent	c.4806	p.S1602	0.037	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020				86	0	0	34	31	47.6923
RPE	0	genome.wustl.edu	37	2	210881345	210881345	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	210881345	210881345	A	G	SNP	RPE	ENST00000359429	human	ensembl	74_37	+1	known	missense	c.457	p.M153V	1.000	pfam_Ribul_P_3_epim-like,superfamily_RibuloseP-bd_barrel,tigrfam_Ribul_P_3_epim-like	pfam_Ribul_P_3_epim-like,superfamily_RibuloseP-bd_barrel,tigrfam_Ribul_P_3_epim-like	-	no_errors	RPE	HGNC	ENSG00000197713				149	0	0	64	49	43.3628
APOB	0	genome.wustl.edu	37	2	21234835	21234835	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	21234835	21234835	T	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.4905	p.K1635N	0.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				82	0	0	34	21	38.1818
APOB	0	genome.wustl.edu	37	2	21255259	21255259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	21255259	21255259	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.1319	p.A440V	1.000	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				95	0	0	75	26	25.7426
ABCA12	0	genome.wustl.edu	37	2	215866295	215866295	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	215866295	215866295	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	silent	c.2850	p.N950	0.918	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				159	0	0	59	30	33.7079
FN1	0	genome.wustl.edu	37	2	216292965	216292965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	216292965	216292965	G	A	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.782	p.T261I	0.999	pfam_Fibronectin_type1,smart_Fibronectin_type1,pfscan_Fibronectin_type1	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				124	0	0	52	5	8.77193
XRCC5	0	genome.wustl.edu	37	2	217069075	217069075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	217069075	217069075	G	A	SNP	XRCC5	ENST00000392132	human	ensembl	74_37	+1	known	missense	c.2140	p.D714N	0.004	NULL	pfam_Ku_N,pfam_Ku_PK_bind,pfam_Ku70/Ku80_beta-barrel_dom,pfam_Ku_C,superfamily_SPOC_like_C_dom,superfamily_Ku_PK_bind,smart_VWF_A,smart_Ku70/Ku80_beta-barrel_dom	-	no_errors	XRCC5	HGNC	ENSG00000079246				116	0	0	56	28	33.3333
IGFBP2	0	genome.wustl.edu	37	2	217526674	217526674	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	217526674	217526674	C	A	SNP	IGFBP2	ENST00000233809	human	ensembl	74_37	+1	known	missense	c.766	p.L256M	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-2	-	no_errors	IGFBP2	HGNC	ENSG00000115457				76	0	0	31	35	53.0303
TNS1	0	genome.wustl.edu	37	2	218713553	218713553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	218713553	218713553	G	A	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	missense	c.1312	p.R438W	0.735	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				103	0	0	57	31	35.2273
WNT10A	0	genome.wustl.edu	37	2	219757584	219757584	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	219757584	219757584	A	T	SNP	WNT10A	ENST00000258411	human	ensembl	74_37	+1	known	missense	c.845	p.E282V	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10A	HGNC	ENSG00000135925				11	0	0	5	3	37.5
CCDC108	0	genome.wustl.edu	37	2	219878669	219878669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	219878669	219878669	C	T	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	missense	c.3700	p.D1234N	1.000	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				39	0	0	13	14	51.8519
CCDC108	0	genome.wustl.edu	37	2	219900228	219900228	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	219900228	219900228	G	T	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	silent	c.516	p.S172	0.004	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				125	0	0	42	30	41.6667
NHEJ1	0	genome.wustl.edu	37	2	220012447	220012447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	220012447	220012447	G	A	SNP	NHEJ1	ENST00000409720	human	ensembl	74_37	-1	known	missense	c.461	p.A154V	0.104	pfam_XLF/Cernunnos	pfam_XLF/Cernunnos	-	no_errors	NHEJ1	HGNC	ENSG00000187736				79	0	0	31	11	26.1905
CHPF	0	genome.wustl.edu	37	2	220404387	220404387	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	220404387	220404387	G	A	SNP	CHPF	ENST00000243776	human	ensembl	74_37	-1	known	silent	c.2046	p.S682	0.037	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CHPF	HGNC	ENSG00000123989				105	0	0	71	18	20.2247
CHPF	0	genome.wustl.edu	37	2	220406868	220406868	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	220406868	220406868	G	A	SNP	CHPF	ENST00000243776	human	ensembl	74_37	-1	known	silent	c.358	p.L120	0.999	NULL	pfam_Chond_GalNAc	-	no_errors	CHPF	HGNC	ENSG00000123989				10	0	0	10	4	28.5714
CCDC140	0	genome.wustl.edu	37	2	223168661	223168661	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	223168661	223168661	C	T	SNP	CCDC140	ENST00000295226	human	ensembl	74_37	+1	known	missense	c.40	p.P14S	0.001	NULL	NULL	-	no_errors	CCDC140	HGNC	ENSG00000163081				28	0	0	12	15	55.5556
ACSL3	0	genome.wustl.edu	37	2	223791735	223791735	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	223791735	223791735	C	T	SNP	ACSL3	ENST00000357430	human	ensembl	74_37	+1	known	silent	c.1293	p.S431	0.647	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL3	HGNC	ENSG00000123983				45	0	0	26	9	25.7143
WDFY1	0	genome.wustl.edu	37	2	224765909	224765909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	224765909	224765909	G	A	SNP	WDFY1	ENST00000233055	human	ensembl	74_37	-1	known	missense	c.476	p.S159L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY1	HGNC	ENSG00000085449				68	0	0	47	13	21.6667
NYAP2	0	genome.wustl.edu	37	2	226446794	226446794	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	226446794	226446794	T	C	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.661	p.S221P	0.237	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				230	0	0	112	63	36
NYAP2	0	genome.wustl.edu	37	2	226447029	226447029	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	226447029	226447029	C	A	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.896	p.P299H	1.000	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				107	0	0	75	35	31.8182
PID1	0	genome.wustl.edu	37	2	230020598	230020598	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	230020598	230020598	G	A	SNP	PID1	ENST00000354069	human	ensembl	74_37	-1	known	missense	c.212	p.P71L	1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	PID1	HGNC	ENSG00000153823				116	0	0	61	40	39.604
SLC16A14	0	genome.wustl.edu	37	2	230910788	230910788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	230910788	230910788	C	T	SNP	SLC16A14	ENST00000295190	human	ensembl	74_37	-1	known	missense	c.1054	p.V352I	0.010	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053				80	0	0	44	31	41.3333
SP140	0	genome.wustl.edu	37	2	231175530	231175530	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	231175530	231175530	G	T	SNP	SP140	ENST00000392045	human	ensembl	74_37	+1	known	missense	c.2247	p.E749D	0.995	superfamily_Bromodomain	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263				22	0	0	6	6	50
ALPI	0	genome.wustl.edu	37	2	233322328	233322328	+	Silent	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	233322328	233322328	T	G	SNP	ALPI	ENST00000295463	human	ensembl	74_37	+1	known	silent	c.702	p.P234	0.994	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPI	HGNC	ENSG00000163295				82	0	0	88	22	20
CHRND	0	genome.wustl.edu	37	2	233394699	233394699	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	233394699	233394699	C	A	SNP	CHRND	ENST00000258385	human	ensembl	74_37	+1	known	missense	c.670	p.P224T	0.998	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRND	HGNC	ENSG00000135902				94	0	0	106	9	7.82609
DGKD	0	genome.wustl.edu	37	2	234343475	234343475	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	234343475	234343475	G	A	SNP	DGKD	ENST00000264057	human	ensembl	74_37	+1	known	missense	c.514	p.A172T	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044				169	0	0	104	38	26.7606
UGT1A9	0	genome.wustl.edu	37	2	234581202	234581202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	234581202	234581202	C	T	SNP	UGT1A9	ENST00000354728	human	ensembl	74_37	+1	known	missense	c.622	p.R208W	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A9	HGNC	ENSG00000241119				384	0	0	189	55	22.541
SH3BP4	0	genome.wustl.edu	37	2	235950198	235950198	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	235950198	235950198	C	T	SNP	SH3BP4	ENST00000344528	human	ensembl	74_37	+1	known	missense	c.785	p.S262L	0.020	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147				241	0	0	163	32	16.4103
SH3BP4	0	genome.wustl.edu	37	2	235962450	235962450	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	235962450	235962450	T	C	SNP	SH3BP4	ENST00000344528	human	ensembl	74_37	+1	known	missense	c.2882	p.F961S	0.421	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147				123	0	0	73	62	45.9259
AGAP1	0	genome.wustl.edu	37	2	236877211	236877211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	236877211	236877211	G	A	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.1589	p.R530Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				81	0	0	58	35	37.6344
AGAP1	0	genome.wustl.edu	37	2	237032729	237032729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	237032729	237032729	G	A	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.2537	p.R846Q	1.000	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				58	0	0	41	26	38.806
GBX2	0	genome.wustl.edu	37	2	237074930	237074930	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	237074930	237074930	C	A	SNP	GBX2	ENST00000306318	human	ensembl	74_37	-1	known	missense	c.674	p.G225V	0.987	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	GBX2	HGNC	ENSG00000168505				79	0	0	52	33	38.8235
ACKR3	0	genome.wustl.edu	37	2	237489698	237489698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	237489698	237489698	G	A	SNP	ACKR3	ENST00000272928	human	ensembl	74_37	+1	known	missense	c.590	p.R197Q	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR7	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR7,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Formyl_pep_rcpt	-	no_errors	ACKR3	HGNC	ENSG00000144476				192	0	0	80	71	47.0199
ESPNL	0	genome.wustl.edu	37	2	239040005	239040005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	239040005	239040005	G	A	SNP	ESPNL	ENST00000343063	human	ensembl	74_37	+1	known	missense	c.2650	p.E884K	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ESPNL	HGNC	ENSG00000144488				11	0	0	7	9	56.25
TRAF3IP1	0	genome.wustl.edu	37	2	239234538	239234538	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	239234538	239234538	G	A	SNP	TRAF3IP1	ENST00000373327	human	ensembl	74_37	+1	known	missense	c.281	p.R94Q	0.756	NULL	NULL	-	no_errors	TRAF3IP1	HGNC	ENSG00000204104				64	0	0	44	19	30.1587
OR6B2	0	genome.wustl.edu	37	2	240969551	240969551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	240969551	240969551	G	A	SNP	OR6B2	ENST00000402971	human	ensembl	74_37	-1	known	missense	c.296	p.T99M	0.609	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6B2	HGNC	ENSG00000182083				80	0	0	79	19	19.3878
ANKMY1	0	genome.wustl.edu	37	2	241463539	241463539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	241463539	241463539	C	T	SNP	ANKMY1	ENST00000272972	human	ensembl	74_37	-1	known	missense	c.1328	p.G443D	0.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_MORN,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_MORN,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY1	HGNC	ENSG00000144504				94	0	0	88	9	9.27835
PASK	0	genome.wustl.edu	37	2	242066644	242066644	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	242066644	242066644	A	G	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	silent	c.1686	p.A562	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				212	0	0	134	79	37.0892
PPP1R7	0	genome.wustl.edu	37	2	242105824	242105824	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	242105824	242105824	G	T	SNP	PPP1R7	ENST00000234038	human	ensembl	74_37	+1	known	missense	c.787	p.G263C	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_U2A'_phosphoprotein32A_C	-	no_errors	PPP1R7	HGNC	ENSG00000115685				51	0	0	17	18	51.4286
THAP4	0	genome.wustl.edu	37	2	242545825	242545825	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	242545825	242545825	T	C	SNP	THAP4	ENST00000407315	human	ensembl	74_37	-1	known	missense	c.1304	p.D435G	1.000	pfam_DUF1794,superfamily_Calycin-like	pfam_DUF1794,pfam_Znf_C2CH,superfamily_Calycin-like,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP4	HGNC	ENSG00000176946				19	0	0	7	4	36.3636
POMC	0	genome.wustl.edu	37	2	25384367	25384367	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	25384367	25384367	C	T	SNP	POMC	ENST00000264708	human	ensembl	74_37	-1	known	silent	c.387	p.K129	0.008	NULL	pfam_Mcrtin_ACTH_cent,pfam_Melanocortin_N,pfam_Opioid_neuropept,prints_Mcortin_ACTH	-	no_errors	POMC	HGNC	ENSG00000115138				23	0	0	13	10	43.4783
ASXL2	0	genome.wustl.edu	37	2	25965028	25965028	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	25965028	25965028	A	G	SNP	ASXL2	ENST00000435504	human	ensembl	74_37	-1	known	missense	c.4178	p.I1393T	0.996	superfamily_Znf_FYVE_PHD	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970				114	0	0	57	25	30.4878
HADHA	0	genome.wustl.edu	37	2	26435415	26435415	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	26435415	26435415	A	G	SNP	HADHA	ENST00000457468	human	ensembl	74_37	-1	known	silent	c.738	p.V246	0.042	NULL	pfam_Crotonase_core_superfam	-	no_errors	HADHA	HGNC	ENSG00000084754				69	0	0	37	17	31.4815
DRC1	0	genome.wustl.edu	37	2	26654771	26654771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	26654771	26654771	G	A	SNP	DRC1	ENST00000288710	human	ensembl	74_37	+1	known	missense	c.785	p.R262H	1.000	NULL	NULL	-	no_errors	DRC1	HGNC	ENSG00000157856				125	0	0	56	37	39.7849
KCNK3	0	genome.wustl.edu	37	2	26950678	26950678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	26950678	26950678	G	A	SNP	KCNK3	ENST00000302909	human	ensembl	74_37	+1	known	missense	c.427	p.A143T	0.981	pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK3,prints_2pore_dom_K_chnl	-	no_errors	KCNK3	HGNC	ENSG00000171303				115	1	0.862069	90	6	6.25
SLC35F6	0	genome.wustl.edu	37	2	26999331	26999331	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	26999331	26999331	G	A	SNP	SLC35F6	ENST00000344420	human	ensembl	74_37	+1	known	silent	c.627	p.L209	0.543	pfam_SLC35_F1/F2/F6,pfam_Tpt_PEP_trans_dom,pfam_UAA,pirsf_UCP036436	pfam_SLC35_F1/F2/F6,pfam_Nuc_sug_transpt,pfam_DMT,pfam_Tpt_PEP_trans_dom,pfam_UAA,pirsf_UCP036436	-	no_errors	SLC35F6	HGNC	ENSG00000213699				65	0	0	42	29	40.8451
DPYSL5	0	genome.wustl.edu	37	2	27121383	27121383	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	27121383	27121383	G	A	SNP	DPYSL5	ENST00000288699	human	ensembl	74_37	+1	known	missense	c.16	p.A6T	1.000	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851				289	0	0	153	98	39.0438
DPYSL5	0	genome.wustl.edu	37	2	27169837	27169837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	27169837	27169837	G	A	SNP	DPYSL5	ENST00000288699	human	ensembl	74_37	+1	known	missense	c.1669	p.G557R	1.000	NULL	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851				30	0	0	19	14	42.4242
SLC5A6	0	genome.wustl.edu	37	2	27428246	27428246	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	27428246	27428246	A	G	SNP	SLC5A6	ENST00000310574	human	ensembl	74_37	-1	known	missense	c.706	p.S236P	0.084	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074				107	0	0	50	35	41.1765
ZNF512	0	genome.wustl.edu	37	2	27844169	27844169	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	27844169	27844169	C	T	SNP	ZNF512	ENST00000355467	human	ensembl	74_37	+1	known	silent	c.1545	p.P515	0.004	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512	HGNC	ENSG00000243943				101	0	0	53	39	42.3913
GALNT14	0	genome.wustl.edu	37	2	31167736	31167736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	31167736	31167736	G	A	SNP	GALNT14	ENST00000349752	human	ensembl	74_37	-1	known	missense	c.815	p.T272M	0.460	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT14	HGNC	ENSG00000158089				105	0	0	44	31	41.3333
TTC27	0	genome.wustl.edu	37	2	32865440	32865440	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	32865440	32865440	T	C	SNP	TTC27	ENST00000317907	human	ensembl	74_37	+1	known	missense	c.500	p.I167T	0.942	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699				67	0	0	26	26	50
TTC27	0	genome.wustl.edu	37	2	32889536	32889536	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	32889536	32889536	T	C	SNP	TTC27	ENST00000317907	human	ensembl	74_37	+1	known	splice_site	c.805+2	e6+2	1.000	-	-	-	no_errors	TTC27	HGNC	ENSG00000018699				47	0	0	21	16	43.2432
COLEC11	0	genome.wustl.edu	37	2	3691463	3691463	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	3691463	3691463	G	A	SNP	COLEC11	ENST00000418971	human	ensembl	74_37	+1	known	missense	c.613	p.A205T	0.255	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	COLEC11	HGNC	ENSG00000118004				71	0	0	39	41	51.25
VIT	0	genome.wustl.edu	37	2	37035867	37035867	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	37035867	37035867	C	T	SNP	VIT	ENST00000379242	human	ensembl	74_37	+1	known	missense	c.1642	p.R548C	0.962	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221				104	0	0	31	31	50
HEATR5B	0	genome.wustl.edu	37	2	37267563	37267563	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	37267563	37267563	C	T	SNP	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	silent	c.2955	p.L985	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				128	0	0	42	26	38.2353
CDKL4	0	genome.wustl.edu	37	2	39440547	39440547	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	39440547	39440547	T	C	SNP	CDKL4	ENST00000378803	human	ensembl	74_37	-1	known	missense	c.357	p.I119M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL4	HGNC	ENSG00000205111				87	0	0	46	4	8
ZFP36L2	0	genome.wustl.edu	37	2	43452855	43452855	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	43452855	43452855	T	C	SNP	ZFP36L2	ENST00000282388	human	ensembl	74_37	-1	known	missense	c.88	p.M30V	1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518				21	0	0	13	12	48
SIX3	0	genome.wustl.edu	37	2	45170049	45170049	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	45170049	45170049	G	T	SNP	SIX3	ENST00000260653	human	ensembl	74_37	+1	known	missense	c.806	p.R269M	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX3	HGNC	ENSG00000138083				34	0	0	18	16	47.0588
PRKCE	0	genome.wustl.edu	37	2	46228616	46228616	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	46228616	46228616	C	T	SNP	PRKCE	ENST00000306156	human	ensembl	74_37	+1	known	silent	c.897	p.I299	0.828	pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132				84	0	0	71	7	8.97436
MSH2	0	genome.wustl.edu	37	2	47641558	47641558	+	Splice_Site	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	47641558	47641558	G	T	SNP	MSH2	ENST00000233146	human	ensembl	74_37	+1	known	splice_site	c.942+1	e5+1	1.000	-	-	-	no_errors	MSH2	HGNC	ENSG00000095002				17	0	0	0	14	100
NRXN1	0	genome.wustl.edu	37	2	50779787	50779787	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	50779787	50779787	A	G	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.1673	p.L558P	0.939	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				150	0	0	66	15	18.5185
CHAC2	0	genome.wustl.edu	37	2	53999066	53999066	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	53999066	53999066	T	G	SNP	CHAC2	ENST00000295304	human	ensembl	74_37	+1	known	missense	c.158	p.V53G	1.000	pfam_ChaC	pfam_ChaC	-	no_errors	CHAC2	HGNC	ENSG00000143942				118	0	0	38	32	45.7143
CHAC2	0	genome.wustl.edu	37	2	53999076	53999076	+	Silent	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	53999076	53999076	T	A	SNP	CHAC2	ENST00000295304	human	ensembl	74_37	+1	known	silent	c.168	p.P56	1.000	pfam_ChaC	pfam_ChaC	-	no_errors	CHAC2	HGNC	ENSG00000143942				112	0	0	37	28	43.0769
ERLEC1	0	genome.wustl.edu	37	2	54041678	54041678	+	Splice_Site	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	54041678	54041678	A	G	SNP	ERLEC1	ENST00000185150	human	ensembl	74_37	+1	known	splice_site	c.1227-2	e12-2	1.000	-	-	-	no_errors	ERLEC1	HGNC	ENSG00000068912				34	0	0	21	4	16
SPTBN1	0	genome.wustl.edu	37	2	54853120	54853120	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	54853120	54853120	G	A	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	missense	c.1393	p.E465K	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				80	0	0	50	28	35.8974
SPTBN1	0	genome.wustl.edu	37	2	54858335	54858335	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	54858335	54858335	C	A	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	missense	c.3151	p.L1051M	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				123	0	0	65	38	36.8932
SPTBN1	0	genome.wustl.edu	37	2	54870189	54870189	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	54870189	54870189	C	T	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	missense	c.3928	p.H1310Y	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				105	0	0	49	34	40.9639
MTIF2	0	genome.wustl.edu	37	2	55476655	55476655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	55476655	55476655	G	A	SNP	MTIF2	ENST00000263629	human	ensembl	74_37	-1	known	missense	c.857	p.A286V	1.000	pfam_EF_GTP-bd_dom,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,superfamily_TIF_IF2_dom3,superfamily_Transl_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760				60	0	0	34	14	29.1667
SMEK2	0	genome.wustl.edu	37	2	55795445	55795445	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	55795445	55795445	C	T	SNP	SMEK2	ENST00000272313	human	ensembl	74_37	-1	known	missense	c.1565	p.R522H	1.000	superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK2	HGNC	ENSG00000138041				70	0	0	27	15	35.7143
BCL11A	0	genome.wustl.edu	37	2	60689070	60689070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	60689070	60689070	G	A	SNP	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	missense	c.977	p.T326M	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				163	0	0	79	56	41.4815
PAPOLG	0	genome.wustl.edu	37	2	60995614	60995614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	60995614	60995614	C	T	SNP	PAPOLG	ENST00000238714	human	ensembl	74_37	+1	known	missense	c.256	p.P86S	1.000	pfam_PolA_pol_cen_dom,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLG	HGNC	ENSG00000115421				84	0	0	43	20	31.746
PAPOLG	0	genome.wustl.edu	37	2	61021224	61021224	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	61021224	61021224	G	A	SNP	PAPOLG	ENST00000238714	human	ensembl	74_37	+1	known	silent	c.1887	p.P629	0.948	pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLG	HGNC	ENSG00000115421				87	0	0	45	34	43.038
USP34	0	genome.wustl.edu	37	2	61522168	61522168	+	Splice_Site	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	61522168	61522168	C	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	splice_site	c.4378-1	e32-1	1.000	-	-	-	no_errors	USP34	HGNC	ENSG00000115464				71	0	0	29	21	42
EHBP1	0	genome.wustl.edu	37	2	63092086	63092086	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	63092086	63092086	T	C	SNP	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	silent	c.1083	p.T361	0.990	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504				94	0	0	35	36	50.7042
ENSG00000273398	0	genome.wustl.edu	37	2	68385008	68385008	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	68385008	68385008	C	A	SNP	ENSG00000273398	ENST00000406334	human	ensembl	74_37	-1	known	missense	c.682	p.A228S	0.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	RP11-474G23.1	Clone_based_vega_gene	ENSG00000273398				25	0	0	13	12	48
GFPT1	0	genome.wustl.edu	37	2	69581630	69581630	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	69581630	69581630	A	G	SNP	GFPT1	ENST00000357308	human	ensembl	74_37	-1	known	missense	c.676	p.Y226H	1.000	NULL	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT1	HGNC	ENSG00000198380				101	0	0	55	10	15.3846
MXD1	0	genome.wustl.edu	37	2	70143292	70143292	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	70143292	70143292	A	G	SNP	MXD1	ENST00000264444	human	ensembl	74_37	+1	known	missense	c.113	p.N38S	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXD1	HGNC	ENSG00000059728				40	0	0	15	11	42.3077
CYP26B1	0	genome.wustl.edu	37	2	72371142	72371142	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	72371142	72371142	G	A	SNP	CYP26B1	ENST00000001146	human	ensembl	74_37	-1	known	silent	c.405	p.G135	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP26B1	HGNC	ENSG00000003137				67	0	0	44	25	36.2319
FBXO41	0	genome.wustl.edu	37	2	73491645	73491645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	73491645	73491645	G	A	SNP	FBXO41	ENST00000295133	human	ensembl	74_37	-1	known	missense	c.1750	p.R584C	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO41	HGNC	ENSG00000163013				51	0	0	36	15	29.4118
C2orf78	0	genome.wustl.edu	37	2	74042616	74042616	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	74042616	74042616	C	T	SNP	C2orf78	ENST00000409561	human	ensembl	74_37	+1	novel	silent	c.1266	p.S422	0.000	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833				54	0	0	22	10	31.25
KCMF1	0	genome.wustl.edu	37	2	85276646	85276646	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	85276646	85276646	C	T	SNP	KCMF1	ENST00000409785	human	ensembl	74_37	+1	known	silent	c.759	p.N253	1.000	pfam_Di19_Zn_binding	pfam_Znf_ZZ,pfam_Di19_Zn_binding,smart_Znf_ZZ,smart_Znf_C2H2-like,pfscan_Znf_ZZ,pfscan_Znf_C2H2	-	no_errors	KCMF1	HGNC	ENSG00000176407				62	0	0	41	22	34.9206
RETSAT	0	genome.wustl.edu	37	2	85578126	85578126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	85578126	85578126	C	T	SNP	RETSAT	ENST00000295802	human	ensembl	74_37	-1	known	missense	c.374	p.R125H	0.002	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase	pfam_Amino_oxidase,pfam_FAD_bind_dom,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_mOase_FAD-bd	-	no_errors	RETSAT	HGNC	ENSG00000042445				85	0	0	42	22	34.375
C2orf68	0	genome.wustl.edu	37	2	85838877	85838877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	85838877	85838877	G	A	SNP	C2orf68	ENST00000306336	human	ensembl	74_37	-1	known	missense	c.140	p.A47V	1.000	pfam_UPF0561	pfam_UPF0561	-	no_errors	C2orf68	HGNC	ENSG00000168887				20	0	0	23	16	41.0256
IMMT	0	genome.wustl.edu	37	2	86371633	86371633	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	86371633	86371633	C	A	SNP	IMMT	ENST00000410111	human	ensembl	74_37	-1	known	nonsense	c.2035	p.E679*	0.903	pfam_Mt-IM_prot_Mitofilin	pfam_Mt-IM_prot_Mitofilin	-	no_errors	IMMT	HGNC	ENSG00000132305				93	0	0	58	18	23.6842
IMMT	0	genome.wustl.edu	37	2	86378493	86378493	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	86378493	86378493	C	T	SNP	IMMT	ENST00000410111	human	ensembl	74_37	-1	known	missense	c.1328	p.R443Q	1.000	pfam_Mt-IM_prot_Mitofilin	pfam_Mt-IM_prot_Mitofilin	-	no_errors	IMMT	HGNC	ENSG00000132305				68	0	0	41	3	6.81818
KDM3A	0	genome.wustl.edu	37	2	86716503	86716503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	86716503	86716503	G	A	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	missense	c.3376	p.A1126T	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				82	0	0	44	13	22.807
KIDINS220	0	genome.wustl.edu	37	2	8943209	8943209	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	8943209	8943209	A	G	SNP	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	missense	c.652	p.S218P	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				40	0	0	15	11	42.3077
ASAP2	0	genome.wustl.edu	37	2	9437478	9437478	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	9437478	9437478	C	T	SNP	ASAP2	ENST00000281419	human	ensembl	74_37	+1	known	silent	c.249	p.G83	0.110	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693				67	0	0	34	14	29.1667
TEKT4	0	genome.wustl.edu	37	2	95541445	95541445	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	95541445	95541445	A	G	SNP	TEKT4	ENST00000295201	human	ensembl	74_37	+1	known	missense	c.1049	p.H350R	1.000	pfam_Tektin,prints_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT4	HGNC	ENSG00000163060				70	0	0	32	26	44.8276
PROM2	0	genome.wustl.edu	37	2	95950790	95950790	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	95950790	95950790	C	T	SNP	PROM2	ENST00000317620	human	ensembl	74_37	+1	known	missense	c.1802	p.A601V	0.003	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066				16	0	0	6	4	40
FAHD2A	0	genome.wustl.edu	37	2	96072864	96072864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	96072864	96072864	G	A	SNP	FAHD2A	ENST00000233379	human	ensembl	74_37	+1	known	missense	c.421	p.V141M	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2A	HGNC	ENSG00000115042				126	0	0	122	11	8.27068
FAHD2CP	0	genome.wustl.edu	37	2	96681032	96681032	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	96681032	96681032	G	A	SNP	FAHD2CP	ENST00000607780	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FAHD2CP	HGNC	ENSG00000231584				35	0	0	12	14	53.8462
ASTL	0	genome.wustl.edu	37	2	96795819	96795819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	96795819	96795819	C	T	SNP	ASTL	ENST00000342380	human	ensembl	74_37	-1	known	missense	c.703	p.V235M	0.498	pfam_Peptidase_M12A,prints_Peptidase_M12A	pfam_Peptidase_M12A,smart_Peptidase_Metallo,prints_Peptidase_M12A	-	no_errors	ASTL	HGNC	ENSG00000188886				87	0	0	44	29	39.726
DUSP2	0	genome.wustl.edu	37	2	96809592	96809592	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	96809592	96809592	C	T	SNP	DUSP2	ENST00000288943	human	ensembl	74_37	-1	known	silent	c.915	p.L305	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP2	HGNC	ENSG00000158050				55	0	0	25	14	35.8974
LOC285033	0	genome.wustl.edu	37	2	96906238	96906238	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	96906238	96906238	G	T	SNP	LOC285033	ENST00000446816	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AC012307.3	Clone_based_vega_gene	ENSG00000204685				103	0	0	33	32	49.2308
LOC285033	0	genome.wustl.edu	37	2	96906418	96906418	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	96906418	96906418	C	A	SNP	LOC285033	ENST00000446816	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	AC012307.3	Clone_based_vega_gene	ENSG00000204685				57	0	0	31	16	34.0426
NEURL3	0	genome.wustl.edu	37	2	97165144	97165144	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	97165144	97165144	A	G	SNP	NEURL3	ENST00000310865	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NEURL3	HGNC	ENSG00000163121				65	0	0	30	26	46.4286
KANSL3	0	genome.wustl.edu	37	2	97274639	97274639	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	97274639	97274639	G	A	SNP	KANSL3	ENST00000431828	human	ensembl	74_37	-1	known	missense	c.1546	p.P516S	0.983	NULL	NULL	-	no_errors	KANSL3	HGNC	ENSG00000114982				9	0	0	8	4	33.3333
SEMA4C	0	genome.wustl.edu	37	2	97527106	97527106	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	97527106	97527106	G	A	SNP	SEMA4C	ENST00000305476	human	ensembl	74_37	-1	known	missense	c.1759	p.R587C	0.840	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4C	HGNC	ENSG00000168758				48	0	0	46	4	8
ACTR1B	0	genome.wustl.edu	37	2	98275411	98275411	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	98275411	98275411	G	A	SNP	ACTR1B	ENST00000289228	human	ensembl	74_37	-1	known	missense	c.371	p.A124V	0.998	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTR1B	HGNC	ENSG00000115073				144	0	0	139	17	10.8974
TMEM131	0	genome.wustl.edu	37	2	98430732	98430732	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	98430732	98430732	A	G	SNP	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	missense	c.1412	p.V471A	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				77	0	0	34	24	41.3793
KIAA1211L	0	genome.wustl.edu	37	2	99413865	99413865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	99413865	99413865	C	T	SNP	KIAA1211L	ENST00000397899	human	ensembl	74_37	-1	known	missense	c.2552	p.R851Q	0.000	NULL	NULL	-	no_errors	KIAA1211L	HGNC	ENSG00000196872				133	1	0.746269	74	38	33.9286
JAG1	0	genome.wustl.edu	37	20	10620392	10620392	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	10620392	10620392	C	T	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	silent	c.3411	p.K1137	1.000	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384				97	0	0	41	38	48.1013
PSMF1	0	genome.wustl.edu	37	20	1143792	1143792	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	1143792	1143792	G	A	SNP	PSMF1	ENST00000333082	human	ensembl	74_37	+1	known	silent	c.570	p.P190	0.003	NULL	pfam_FP_dom,pfam_PI31_Prot_Reg	-	no_errors	PSMF1	HGNC	ENSG00000125818				30	0	0	30	17	36.1702
ISM1	0	genome.wustl.edu	37	20	13251371	13251371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	13251371	13251371	G	A	SNP	ISM1	ENST00000262487	human	ensembl	74_37	+1	known	missense	c.359	p.G120E	1.000	NULL	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230				39	0	0	20	8	28.5714
ISM1	0	genome.wustl.edu	37	20	13279875	13279875	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	13279875	13279875	C	T	SNP	ISM1	ENST00000262487	human	ensembl	74_37	+1	known	silent	c.1164	p.G388	0.447	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230				24	0	0	12	8	40
TASP1	0	genome.wustl.edu	37	20	13398144	13398144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	13398144	13398144	G	A	SNP	TASP1	ENST00000337743	human	ensembl	74_37	-1	known	missense	c.1121	p.T374M	0.995	NULL	pfam_Peptidase_T2	-	no_errors	TASP1	HGNC	ENSG00000089123				61	0	0	36	14	28
SEL1L2	0	genome.wustl.edu	37	20	13894524	13894524	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	13894524	13894524	G	A	SNP	SEL1L2	ENST00000284951	human	ensembl	74_37	-1	known	silent	c.453	p.D151	0.999	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251				68	0	0	32	13	28.8889
FLRT3	0	genome.wustl.edu	37	20	14307035	14307035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	14307035	14307035	G	A	SNP	FLRT3	ENST00000341420	human	ensembl	74_37	-1	known	missense	c.1118	p.T373I	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848				234	0	0	97	58	37.4194
FLRT3	0	genome.wustl.edu	37	20	14307226	14307226	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	14307226	14307226	G	A	SNP	FLRT3	ENST00000341420	human	ensembl	74_37	-1	known	silent	c.927	p.C309	0.998	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848				120	1	0.826446	34	34	50
KIF16B	0	genome.wustl.edu	37	20	16337073	16337073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	16337073	16337073	C	T	SNP	KIF16B	ENST00000354981	human	ensembl	74_37	-1	known	missense	c.3523	p.A1175T	1.000	superfamily_Phox	pfam_Kinesin_motor_dom,pfam_Phox,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,superfamily_Phox,smart_Kinesin_motor_dom,smart_Phox,pfscan_Phox,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				66	0	0	51	9	15
PCSK2	0	genome.wustl.edu	37	20	17417499	17417499	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	17417499	17417499	C	T	SNP	PCSK2	ENST00000262545	human	ensembl	74_37	+1	known	silent	c.856	p.L286	0.945	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK2	HGNC	ENSG00000125851				40	0	0	23	19	45.2381
CSRP2BP	0	genome.wustl.edu	37	20	18142882	18142882	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	18142882	18142882	T	C	SNP	CSRP2BP	ENST00000435364	human	ensembl	74_37	+1	known	silent	c.1101	p.H367	0.978	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474				329	0	0	211	20	8.65801
PDYN	0	genome.wustl.edu	37	20	1961192	1961192	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	1961192	1961192	T	C	SNP	PDYN	ENST00000217305	human	ensembl	74_37	-1	known	missense	c.542	p.K181R	1.000	NULL	pfam_Opioid_neupept,prints_Proenkphlin_B,prints_Opioid_neupept	-	no_errors	PDYN	HGNC	ENSG00000101327				155	0	0	74	45	37.8151
CRNKL1	0	genome.wustl.edu	37	20	20029078	20029078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	20029078	20029078	C	T	SNP	CRNKL1	ENST00000377340	human	ensembl	74_37	-1	known	missense	c.847	p.A283T	1.000	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343				47	0	0	28	17	37.7778
C20orf26	0	genome.wustl.edu	37	20	20258057	20258057	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	20258057	20258057	C	T	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	silent	c.2751	p.S917	0.001	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				181	0	0	78	45	36.5854
TGM3	0	genome.wustl.edu	37	20	2290970	2290970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	2290970	2290970	C	T	SNP	TGM3	ENST00000381458	human	ensembl	74_37	+1	known	missense	c.328	p.R110W	0.010	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM3	HGNC	ENSG00000125780				248	0	0	179	36	16.7442
SSTR4	0	genome.wustl.edu	37	20	23017249	23017249	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	23017249	23017249	C	T	SNP	SSTR4	ENST00000255008	human	ensembl	74_37	+1	known	missense	c.1129	p.R377C	0.008	prints_Somatstn_rcpt_4	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_4,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671				102	0	0	64	39	37.8641
GZF1	0	genome.wustl.edu	37	20	23346375	23346375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	23346375	23346375	C	T	SNP	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	missense	c.1355	p.T452M	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				30	0	0	27	11	28.9474
GZF1	0	genome.wustl.edu	37	20	23350284	23350284	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	23350284	23350284	G	A	SNP	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	missense	c.1691	p.R564H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				170	0	0	77	32	29.3578
ACSS1	0	genome.wustl.edu	37	20	24988462	24988462	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	24988462	24988462	C	G	SNP	ACSS1	ENST00000323482	human	ensembl	74_37	-1	known	missense	c.2006	p.S669T	0.000	tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930				150	0	0	75	31	29.2453
NCOR1P1	0	genome.wustl.edu	37	20	26084106	26084106	+	RNA	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	26084106	26084106	A	T	SNP	NCOR1P1	ENST00000478176	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	NCOR1P1	HGNC	ENSG00000240108				31	0	0	16	4	20
IDH3B	0	genome.wustl.edu	37	20	2639086	2639086	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	2639086	2639086	G	A	SNP	IDH3B	ENST00000466494	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	IDH3B	HGNC	ENSG00000101365				42	0	0	15	12	44.4444
GNRH2	0	genome.wustl.edu	37	20	3025350	3025350	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	3025350	3025350	C	T	SNP	GNRH2	ENST00000245983	human	ensembl	74_37	+1	known	silent	c.180	p.G60	0.002	NULL	pfam_GnRH	-	no_errors	GNRH2	HGNC	ENSG00000125787				28	0	0	14	9	39.1304
TPX2	0	genome.wustl.edu	37	20	30359471	30359471	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	30359471	30359471	T	C	SNP	TPX2	ENST00000340513	human	ensembl	74_37	+1	known	silent	c.594	p.C198	0.014	NULL	pfam_TPX2_central_dom,pfam_Aurora-A-bd,pfam_TPX2_dom_C	-	no_errors	TPX2	HGNC	ENSG00000088325				87	0	0	32	14	30.4348
TM9SF4	0	genome.wustl.edu	37	20	30723902	30723902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	30723902	30723902	C	T	SNP	TM9SF4	ENST00000398022	human	ensembl	74_37	+1	known	missense	c.155	p.T52I	1.000	NULL	pfam_EMP70	-	no_errors	TM9SF4	HGNC	ENSG00000101337				94	0	0	41	5	10.8696
POFUT1	0	genome.wustl.edu	37	20	30797988	30797988	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	30797988	30797988	T	C	SNP	POFUT1	ENST00000375749	human	ensembl	74_37	+1	known	missense	c.239	p.F80S	1.000	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase	-	no_errors	POFUT1	HGNC	ENSG00000101346				204	0	0	91	69	43.125
POFUT1	0	genome.wustl.edu	37	20	30803189	30803189	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	30803189	30803189	C	T	SNP	POFUT1	ENST00000375749	human	ensembl	74_37	+1	known	missense	c.364	p.R122W	1.000	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase	-	no_errors	POFUT1	HGNC	ENSG00000101346				160	0	0	71	40	36.036
ASXL1	0	genome.wustl.edu	37	20	31017153	31017153	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	31017153	31017153	A	G	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	missense	c.484	p.K162E	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				49	0	0	29	7	19.4444
DNMT3B	0	genome.wustl.edu	37	20	31380444	31380444	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	31380444	31380444	C	T	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	nonsense	c.934	p.R312*	0.992	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				103	0	0	83	6	6.74157
DNMT3B	0	genome.wustl.edu	37	20	31387129	31387129	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	31387129	31387129	C	T	SNP	DNMT3B	ENST00000328111	human	ensembl	74_37	+1	known	missense	c.1754	p.A585V	1.000	pfam_C5_MeTfrase	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3B	HGNC	ENSG00000088305				20	0	0	12	9	42.8571
LZTS3	0	genome.wustl.edu	37	20	3146349	3146349	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	3146349	3146349	C	T	SNP	LZTS3	ENST00000329152	human	ensembl	74_37	-1	known	missense	c.1117	p.G373R	0.797	NULL	NULL	-	no_errors	LZTS3	Uniprot_gn	ENSG00000088899				14	0	0	7	6	46.1538
SUN5	0	genome.wustl.edu	37	20	31572905	31572905	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	31572905	31572905	C	A	SNP	SUN5	ENST00000356173	human	ensembl	74_37	-1	known	missense	c.984	p.Q328H	1.000	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN5	HGNC	ENSG00000167098				110	0	0	79	15	15.9574
SNTA1	0	genome.wustl.edu	37	20	31998031	31998031	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	31998031	31998031	C	T	SNP	SNTA1	ENST00000217381	human	ensembl	74_37	-1	known	missense	c.1147	p.V383M	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTA1	HGNC	ENSG00000101400				41	0	0	28	4	12.5
SLC4A11	0	genome.wustl.edu	37	20	3209316	3209316	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	3209316	3209316	C	A	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	missense	c.2359	p.G787C	0.991	pfam_HCO3_transpt_C	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				67	0	0	56	5	8.19672
C20orf194	0	genome.wustl.edu	37	20	3236681	3236681	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	3236681	3236681	T	C	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	missense	c.3232	p.K1078E	1.000	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				69	0	0	41	35	46.0526
C20orf194	0	genome.wustl.edu	37	20	3236756	3236756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	3236756	3236756	C	T	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	missense	c.3157	p.V1053I	0.002	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				112	0	0	69	29	29.5918
TP53INP2	0	genome.wustl.edu	37	20	33297114	33297114	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	33297114	33297114	A	G	SNP	TP53INP2	ENST00000374809	human	ensembl	74_37	+1	known	missense	c.199	p.M67V	1.000	NULL	NULL	-	no_errors	TP53INP2	HGNC	ENSG00000078804				33	0	0	24	10	29.4118
NCOA6	0	genome.wustl.edu	37	20	33342540	33342540	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	33342540	33342540	T	C	SNP	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	missense	c.1660	p.N554D	0.987	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				81	0	0	58	45	43.6893
ACSS2	0	genome.wustl.edu	37	20	33515171	33515171	+	RNA	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	33515171	33515171	A	T	SNP	ACSS2	ENST00000476922	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.730	-	-	-	no_errors	ACSS2	HGNC	ENSG00000131069				31	0	0	14	11	44
PROCR	0	genome.wustl.edu	37	20	33763974	33763974	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	33763974	33763974	C	A	SNP	PROCR	ENST00000216968	human	ensembl	74_37	+1	known	missense	c.326	p.P109H	0.999	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	PROCR	HGNC	ENSG00000101000				141	0	0	80	56	41.1765
CPNE1	0	genome.wustl.edu	37	20	34220121	34220121	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	34220121	34220121	T	C	SNP	CPNE1	ENST00000317677	human	ensembl	74_37	-1	known	silent	c.435	p.V145	0.793	superfamily_C2_dom,smart_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE1	HGNC	ENSG00000214078				89	0	0	54	15	21.7391
RBM12	0	genome.wustl.edu	37	20	34241114	34241114	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	34241114	34241114	C	A	SNP	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	nonsense	c.2131	p.G711*	0.967	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462				117	0	0	59	22	27.1605
EPB41L1	0	genome.wustl.edu	37	20	34763505	34763505	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	34763505	34763505	G	A	SNP	EPB41L1	ENST00000338074	human	ensembl	74_37	+1	known	silent	c.210	p.E70	1.000	pirsf_Band_41_protein	pfam_Band_4.1_C,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_SAB_dom,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pirsf_Band_41_protein,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L1	HGNC	ENSG00000088367				90	0	0	48	30	38.4615
SOGA1	0	genome.wustl.edu	37	20	35422787	35422787	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	35422787	35422787	G	A	SNP	SOGA1	ENST00000237536	human	ensembl	74_37	-1	known	missense	c.3698	p.P1233L	0.009	NULL	pfam_SOGA	-	no_errors	SOGA1	HGNC	ENSG00000149639				36	0	0	39	5	11.3636
RPN2	0	genome.wustl.edu	37	20	35812696	35812696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	35812696	35812696	C	T	SNP	RPN2	ENST00000237530	human	ensembl	74_37	+1	known	missense	c.127	p.R43C	0.961	pfam_Swp1	pfam_Swp1	-	no_errors	RPN2	HGNC	ENSG00000118705				118	0	0	81	8	8.98876
SRC	0	genome.wustl.edu	37	20	36022272	36022272	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	36022272	36022272	T	C	SNP	SRC	ENST00000489153	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.572	-	-	-	no_errors	SRC	HGNC	ENSG00000197122				30	0	0	14	12	46.1538
KIAA1755	0	genome.wustl.edu	37	20	36859622	36859622	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	36859622	36859622	T	C	SNP	KIAA1755	ENST00000279024	human	ensembl	74_37	-1	known	missense	c.1853	p.Y618C	1.000	superfamily_CRAL-TRIO_dom	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633				30	0	0	14	16	53.3333
RALGAPB	0	genome.wustl.edu	37	20	37150172	37150172	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	37150172	37150172	C	T	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.1450	p.R484W	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				119	0	0	60	33	35.4839
RALGAPB	0	genome.wustl.edu	37	20	37175008	37175008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	37175008	37175008	G	A	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.2837	p.R946Q	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				124	0	0	50	20	28.5714
RALGAPB	0	genome.wustl.edu	37	20	37179730	37179730	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	37179730	37179730	C	A	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.3026	p.P1009H	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				244	0	0	114	27	19.1489
SLC32A1	0	genome.wustl.edu	37	20	37353630	37353630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	37353630	37353630	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.263	p.G88D	1.000	NULL	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				77	0	0	58	22	27.5
DHX35	0	genome.wustl.edu	37	20	37601269	37601269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	37601269	37601269	G	A	SNP	DHX35	ENST00000252011	human	ensembl	74_37	+1	known	missense	c.242	p.C81Y	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452				59	0	0	25	10	28.5714
MAVS	0	genome.wustl.edu	37	20	3843058	3843058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	3843058	3843058	C	T	SNP	MAVS	ENST00000428216	human	ensembl	74_37	+1	known	missense	c.623	p.A208V	0.334	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888				57	0	0	48	21	30.4348
PLCG1	0	genome.wustl.edu	37	20	39791353	39791353	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	39791353	39791353	C	T	SNP	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	silent	c.669	p.S223	1.000	pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_dom,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181				29	0	0	19	9	32.1429
CHD6	0	genome.wustl.edu	37	20	40113055	40113055	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	40113055	40113055	G	A	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.2194	p.P732S	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				199	0	0	83	61	42.3611
PTPRT	0	genome.wustl.edu	37	20	40730915	40730915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	40730915	40730915	C	T	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.3620	p.R1207H	0.823	smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				51	0	0	33	21	38.8889
RBCK1	0	genome.wustl.edu	37	20	409676	409676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	409676	409676	C	T	SNP	RBCK1	ENST00000356286	human	ensembl	74_37	+1	known	missense	c.1390	p.R464C	1.000	pfam_Znf_C6HC	pfam_Znf_C6HC,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Znf_RING,pfscan_Znf_RanBP2,pfscan_Znf_RING,pfscan_Ubiquitin_supergroup	-	no_errors	RBCK1	HGNC	ENSG00000125826				62	0	0	37	11	22.9167
SMOX	0	genome.wustl.edu	37	20	4163382	4163382	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	4163382	4163382	G	A	SNP	SMOX	ENST00000305958	human	ensembl	74_37	+1	known	missense	c.1256	p.R419H	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	-	no_errors	SMOX	HGNC	ENSG00000088826				74	0	0	42	29	40.8451
SMOX	0	genome.wustl.edu	37	20	4163473	4163473	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	4163473	4163473	G	A	SNP	SMOX	ENST00000305958	human	ensembl	74_37	+1	known	silent	c.1347	p.T449	0.002	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	-	no_errors	SMOX	HGNC	ENSG00000088826				45	0	0	34	23	40.3509
L3MBTL1	0	genome.wustl.edu	37	20	42143746	42143746	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	42143746	42143746	G	A	SNP	L3MBTL1	ENST00000418998	human	ensembl	74_37	+1	known	silent	c.534	p.A178	0.000	NULL	pfam_Mbt,pfam_Znf_C2HC,superfamily_SAM/pointed,smart_Mbt,pfscan_Mbt	-	no_errors	L3MBTL1	HGNC	ENSG00000185513				103	0	0	53	46	46.4646
MYBL2	0	genome.wustl.edu	37	20	42328423	42328423	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	42328423	42328423	C	T	SNP	MYBL2	ENST00000217026	human	ensembl	74_37	+1	known	silent	c.690	p.S230	0.000	NULL	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057				61	0	0	33	11	25
JPH2	0	genome.wustl.edu	37	20	42744671	42744671	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	42744671	42744671	C	T	SNP	JPH2	ENST00000372980	human	ensembl	74_37	-1	known	silent	c.1644	p.L548	1.000	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH2	HGNC	ENSG00000149596				12	0	0	12	6	33.3333
JPH2	0	genome.wustl.edu	37	20	42788504	42788504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	42788504	42788504	C	T	SNP	JPH2	ENST00000372980	human	ensembl	74_37	-1	known	missense	c.923	p.R308H	1.000	pfam_MORN,smart_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH2	HGNC	ENSG00000149596				40	0	0	26	13	33.3333
TTPAL	0	genome.wustl.edu	37	20	43109079	43109079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	43109079	43109079	G	A	SNP	TTPAL	ENST00000262605	human	ensembl	74_37	+1	known	missense	c.440	p.R147H	1.000	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPAL	HGNC	ENSG00000124120				129	0	0	65	30	31.5789
PABPC1L	0	genome.wustl.edu	37	20	43545461	43545461	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	43545461	43545461	C	T	SNP	PABPC1L	ENST00000217073	human	ensembl	74_37	+1	known	missense	c.452	p.A151V	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104				156	1	0.636943	117	60	33.8983
SEMG1	0	genome.wustl.edu	37	20	43836348	43836348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	43836348	43836348	G	A	SNP	SEMG1	ENST00000372781	human	ensembl	74_37	+1	known	missense	c.410	p.R137H	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG1	HGNC	ENSG00000124233				116	0	0	48	40	45.4545
SEMG1	0	genome.wustl.edu	37	20	43836680	43836680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	43836680	43836680	C	T	SNP	SEMG1	ENST00000372781	human	ensembl	74_37	+1	known	missense	c.742	p.H248Y	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG1	HGNC	ENSG00000124233				153	0	0	103	6	5.50459
PIGT	0	genome.wustl.edu	37	20	44050193	44050193	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	44050193	44050193	A	C	SNP	PIGT	ENST00000279036	human	ensembl	74_37	+1	known	missense	c.1204	p.I402L	1.000	pfam_PIG-T	pfam_PIG-T	-	no_errors	PIGT	HGNC	ENSG00000124155				65	0	0	53	10	15.873
ZSWIM3	0	genome.wustl.edu	37	20	44505406	44505406	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	44505406	44505406	C	T	SNP	ZSWIM3	ENST00000255152	human	ensembl	74_37	+1	known	missense	c.209	p.T70M	0.013	NULL	pfam_Znf_SWIM,pfam_MULE_transposase_dom,pfam_Transposase,smart_Znf_PMZ,pfscan_Znf_SWIM	-	no_errors	ZSWIM3	HGNC	ENSG00000132801				100	0	0	75	12	13.7931
SPATA25	0	genome.wustl.edu	37	20	44515671	44515671	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	44515671	44515671	C	T	SNP	SPATA25	ENST00000372519	human	ensembl	74_37	-1	known	missense	c.169	p.A57T	0.954	NULL	NULL	-	no_errors	SPATA25	HGNC	ENSG00000149634				160	0	0	135	12	8.16327
PCIF1	0	genome.wustl.edu	37	20	44571745	44571745	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	44571745	44571745	C	A	SNP	PCIF1	ENST00000372409	human	ensembl	74_37	+1	known	missense	c.683	p.P228H	1.000	NULL	pfam_PCIF1_WW,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	PCIF1	HGNC	ENSG00000100982				42	0	0	19	10	34.4828
NCOA3	0	genome.wustl.edu	37	20	46268504	46268504	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	46268504	46268504	G	A	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	missense	c.2891	p.R964Q	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				142	0	0	59	48	44.8598
SULF2	0	genome.wustl.edu	37	20	46295174	46295174	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	46295174	46295174	G	A	SNP	SULF2	ENST00000359930	human	ensembl	74_37	-1	known	silent	c.1635	p.D545	0.316	pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562				128	0	0	115	19	14.1791
PREX1	0	genome.wustl.edu	37	20	47253165	47253165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	47253165	47253165	C	T	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	missense	c.4003	p.V1335M	0.870	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126				29	0	0	21	14	40
ARFGEF2	0	genome.wustl.edu	37	20	47601337	47601337	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	47601337	47601337	A	G	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.2030	p.D677G	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				166	0	0	94	70	42.6829
CSE1L	0	genome.wustl.edu	37	20	47688880	47688880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	47688880	47688880	G	A	SNP	CSE1L	ENST00000262982	human	ensembl	74_37	+1	known	missense	c.826	p.A276T	1.000	pfam_Cse1,superfamily_ARM-type_fold	pfam_CAS_CSE1_C,pfam_Cse1,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	CSE1L	HGNC	ENSG00000124207				102	0	0	33	30	47.619
RASSF2	0	genome.wustl.edu	37	20	4773205	4773205	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	4773205	4773205	T	C	SNP	RASSF2	ENST00000379376	human	ensembl	74_37	-1	known	missense	c.356	p.D119G	0.015	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF2	HGNC	ENSG00000101265				37	0	0	34	8	19.0476
DDX27	0	genome.wustl.edu	37	20	47843072	47843072	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	47843072	47843072	G	T	SNP	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	missense	c.799	p.G267C	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				54	0	0	44	13	22.807
PARD6B	0	genome.wustl.edu	37	20	49366212	49366212	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	49366212	49366212	T	C	SNP	PARD6B	ENST00000371610	human	ensembl	74_37	+1	known	silent	c.306	p.S102	1.000	NULL	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6B	HGNC	ENSG00000124171				51	0	0	34	12	26.087
ATP9A	0	genome.wustl.edu	37	20	50226683	50226683	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	50226683	50226683	A	G	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	missense	c.2593	p.Y865H	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				52	0	0	31	23	42.5926
ZNF217	0	genome.wustl.edu	37	20	52199236	52199236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	52199236	52199236	C	T	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	missense	c.130	p.A44T	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				105	0	0	54	30	35.7143
CBLN4	0	genome.wustl.edu	37	20	54578981	54578981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	54578981	54578981	G	A	SNP	CBLN4	ENST00000064571	human	ensembl	74_37	-1	known	missense	c.247	p.P83S	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN4	HGNC	ENSG00000054803				228	0	0	188	11	5.52764
MC3R	0	genome.wustl.edu	37	20	54824415	54824415	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	54824415	54824415	C	T	SNP	MC3R	ENST00000243911	human	ensembl	74_37	+1	known	silent	c.516	p.C172	0.938	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_3_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC3R	HGNC	ENSG00000124089				127	0	0	73	30	29.1262
AURKA	0	genome.wustl.edu	37	20	54961466	54961466	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	54961466	54961466	G	A	SNP	AURKA	ENST00000312783	human	ensembl	74_37	-1	known	missense	c.166	p.R56C	0.994	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AURKA	HGNC	ENSG00000087586				145	0	0	64	42	39.6226
FAM209B	0	genome.wustl.edu	37	20	55108475	55108475	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	55108475	55108475	A	T	SNP	FAM209B	ENST00000371325	human	ensembl	74_37	+1	known	missense	c.78	p.R26S	0.365	NULL	NULL	-	no_errors	FAM209B	HGNC	ENSG00000213714				181	1	0.549451	53	59	52.6786
BMP7	0	genome.wustl.edu	37	20	55777645	55777645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	55777645	55777645	G	A	SNP	BMP7	ENST00000395863	human	ensembl	74_37	-1	known	missense	c.646	p.L216F	0.937	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP7	HGNC	ENSG00000101144				67	0	0	39	12	23.5294
APCDD1L	0	genome.wustl.edu	37	20	57042284	57042284	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	57042284	57042284	G	A	SNP	APCDD1L	ENST00000439429	human	ensembl	74_37	-1	known	missense	c.652	p.P218S	0.992	NULL	NULL	-	no_errors	APCDD1L	HGNC	ENSG00000198768				23	0	0	18	13	41.9355
GNAS	0	genome.wustl.edu	37	20	57415808	57415808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	57415808	57415808	G	A	SNP	GNAS	ENST00000313949	human	ensembl	74_37	+1	known	missense	c.647	p.R216Q	0.344	pfam_NESP55	pfam_NESP55	-	no_errors	GNAS	HGNC	ENSG00000087460				33	0	0	14	11	44
GNAS	0	genome.wustl.edu	37	20	57485417	57485417	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	57485417	57485417	C	T	SNP	GNAS	ENST00000354359	human	ensembl	74_37	+1	known	silent	c.1002	p.R334	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460				78	0	0	43	19	30.6452
PHACTR3	0	genome.wustl.edu	37	20	58348375	58348375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	58348375	58348375	G	A	SNP	PHACTR3	ENST00000371015	human	ensembl	74_37	+1	known	missense	c.793	p.D265N	0.650	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495				119	0	0	77	55	41.6667
SYCP2	0	genome.wustl.edu	37	20	58443592	58443592	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	58443592	58443592	T	C	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	missense	c.3864	p.I1288M	0.133	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				67	0	0	24	28	53.8462
LRRN4	0	genome.wustl.edu	37	20	6021784	6021784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	6021784	6021784	C	T	SNP	LRRN4	ENST00000378858	human	ensembl	74_37	-1	known	missense	c.2107	p.A703T	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LRRN4	HGNC	ENSG00000125872				39	0	0	12	6	33.3333
CDH4	0	genome.wustl.edu	37	20	60485514	60485514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	60485514	60485514	G	A	SNP	CDH4	ENST00000360469	human	ensembl	74_37	+1	known	missense	c.1225	p.V409M	0.967	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242				48	0	0	54	7	11.4754
HRH3	0	genome.wustl.edu	37	20	60791601	60791601	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	60791601	60791601	C	T	SNP	HRH3	ENST00000317393	human	ensembl	74_37	-1	known	missense	c.799	p.G267R	0.620	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H3_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H3_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	-	no_errors	HRH3	HGNC	ENSG00000101180				15	0	0	13	6	31.5789
LAMA5	0	genome.wustl.edu	37	20	60902981	60902981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	60902981	60902981	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.4738	p.H1580Y	0.998	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				74	0	0	55	30	35.2941
GATA5	0	genome.wustl.edu	37	20	61048529	61048529	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	61048529	61048529	C	T	SNP	GATA5	ENST00000252997	human	ensembl	74_37	-1	known	missense	c.629	p.C210Y	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA5	HGNC	ENSG00000130700				14	0	0	15	6	28.5714
SLCO4A1	0	genome.wustl.edu	37	20	61288032	61288032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	61288032	61288032	C	T	SNP	SLCO4A1	ENST00000217159	human	ensembl	74_37	+1	known	missense	c.226	p.R76W	0.000	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4A1	HGNC	ENSG00000101187				19	0	0	16	9	36
MIR124-3	0	genome.wustl.edu	37	20	61809880	61809880	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	61809880	61809880	A	G	SNP	MIR124-3	ENST00000384866	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR124-3	HGNC	ENSG00000207598				31	0	0	20	5	20
COL20A1	0	genome.wustl.edu	37	20	61945176	61945176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	61945176	61945176	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	missense	c.2291	p.P764L	0.993	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				26	0	0	30	6	16.6667
HELZ2	0	genome.wustl.edu	37	20	62196274	62196274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	62196274	62196274	C	T	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.3901	p.G1301S	0.207	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				57	0	0	53	6	10.1695
GMEB2	0	genome.wustl.edu	37	20	62221652	62221652	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	62221652	62221652	G	A	SNP	GMEB2	ENST00000266068	human	ensembl	74_37	-1	known	silent	c.1383	p.A461	0.997	NULL	pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Sig_transdc_His_kin_Hpt_dom,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB2	HGNC	ENSG00000101216				43	0	0	21	24	53.3333
RTEL1	0	genome.wustl.edu	37	20	62328129	62328129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	62328129	62328129	G	A	SNP	RTEL1	ENST00000318100	human	ensembl	74_37	+1	known	missense	c.3916	p.A1306T	0.000	NULL	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366				17	0	0	12	10	45.4545
ABHD16B	0	genome.wustl.edu	37	20	62493364	62493364	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	62493364	62493364	C	T	SNP	ABHD16B	ENST00000369916	human	ensembl	74_37	+1	known	silent	c.471	p.F157	1.000	NULL	pfam_AB_hydrolase_1	-	no_errors	ABHD16B	HGNC	ENSG00000183260				37	0	0	37	16	30.1887
UCKL1	0	genome.wustl.edu	37	20	62575950	62575950	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	62575950	62575950	G	A	SNP	UCKL1	ENST00000354216	human	ensembl	74_37	-1	known	silent	c.792	p.F264	0.065	pfam_PRK/URK,superfamily_P-loop_NTPase,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_CPT,superfamily_P-loop_NTPase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC	ENSG00000198276				19	0	0	17	12	41.3793
TCEA2	0	genome.wustl.edu	37	20	62701180	62701180	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	62701180	62701180	C	A	SNP	TCEA2	ENST00000395053	human	ensembl	74_37	+1	known	missense	c.523	p.L175I	1.000	pirsf_TF_IIS-rel	pfam_TFIIS_N,pfam_TFIIS_cen_dom,superfamily_TFIIS_N,superfamily_TFIIS_cen_dom,smart_TFIIS/CRSP70_N_sub,pirsf_TF_IIS-rel	-	no_errors	TCEA2	HGNC	ENSG00000171703				66	0	0	77	7	8.33333
NPBWR2	0	genome.wustl.edu	37	20	62737941	62737941	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	62737941	62737941	C	T	SNP	NPBWR2	ENST00000369768	human	ensembl	74_37	-1	known	missense	c.244	p.V82M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	-	no_errors	NPBWR2	HGNC	ENSG00000125522				53	0	0	39	4	9.30233
PAK7	0	genome.wustl.edu	37	20	9546626	9546626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	9546626	9546626	C	T	SNP	PAK7	ENST00000353224	human	ensembl	74_37	-1	known	missense	c.1396	p.A466T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK7	HGNC	ENSG00000101349				197	0	0	83	48	36.6412
NRIP1	0	genome.wustl.edu	37	21	16339964	16339964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	16339964	16339964	G	A	SNP	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	missense	c.550	p.H184Y	1.000	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				83	0	0	26	16	38.0952
ADAMTS1	0	genome.wustl.edu	37	21	28217144	28217144	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	28217144	28217144	G	T	SNP	ADAMTS1	ENST00000284984	human	ensembl	74_37	-1	known	missense	c.130	p.L44M	0.699	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734				11	0	0	5	4	44.4444
KRTAP19-2	0	genome.wustl.edu	37	21	31859629	31859629	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	31859629	31859629	G	A	SNP	KRTAP19-2	ENST00000334055	human	ensembl	74_37	-1	known	silent	c.39	p.C13	0.038	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP19-2	HGNC	ENSG00000186965				261	0	0	237	62	20.7358
TIAM1	0	genome.wustl.edu	37	21	32526612	32526612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	32526612	32526612	G	A	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.3124	p.R1042C	1.000	superfamily_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				101	0	0	38	33	46.4789
SCAF4	0	genome.wustl.edu	37	21	33068890	33068890	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	33068890	33068890	C	A	SNP	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	missense	c.951	p.Q317H	0.998	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF4	HGNC	ENSG00000156304				50	0	0	17	12	41.3793
C21orf59	0	genome.wustl.edu	37	21	33984413	33984413	+	Splice_Site	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	33984413	33984413	A	G	SNP	C21orf59	ENST00000290155	human	ensembl	74_37	-1	known	splice_site	c.139+2	e1+2	1.000	-	-	-	no_errors	C21orf59	HGNC	ENSG00000159079				8	0	0	1	6	85.7143
ITSN1	0	genome.wustl.edu	37	21	35195847	35195847	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	35195847	35195847	C	T	SNP	ITSN1	ENST00000381285	human	ensembl	74_37	+1	known	nonsense	c.3073	p.Q1025*	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,superfamily_P-loop_NTPase,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN1	HGNC	ENSG00000205726				127	0	0	47	34	41.9753
SETD4	0	genome.wustl.edu	37	21	37417937	37417937	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	37417937	37417937	C	T	SNP	SETD4	ENST00000332131	human	ensembl	74_37	-1	known	silent	c.669	p.P223	0.314	pfam_SET_dom,pirsf_Lys_MTase_YDR198C_prd	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,pirsf_Lys_MTase_YDR198C_prd	-	no_errors	SETD4	HGNC	ENSG00000185917				87	0	0	40	29	42.029
DOPEY2	0	genome.wustl.edu	37	21	37623582	37623582	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	37623582	37623582	G	A	SNP	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	silent	c.5121	p.K1707	1.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				63	0	0	42	19	31.1475
MORC3	0	genome.wustl.edu	37	21	37728931	37728931	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	37728931	37728931	G	A	SNP	MORC3	ENST00000400485	human	ensembl	74_37	+1	known	missense	c.1117	p.A373T	1.000	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256				84	0	0	27	8	22.8571
MORC3	0	genome.wustl.edu	37	21	37732303	37732303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	37732303	37732303	G	A	SNP	MORC3	ENST00000400485	human	ensembl	74_37	+1	known	missense	c.1259	p.R420Q	1.000	pfam_Znf_CW,pfscan_Znf_CW	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256				199	0	0	75	29	27.8846
DSCR3	0	genome.wustl.edu	37	21	38610871	38610871	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	38610871	38610871	G	A	SNP	DSCR3	ENST00000309117	human	ensembl	74_37	-1	known	missense	c.241	p.P81S	1.000	pfam_VPS26,pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_VPS26,pfam_Arrestin-like_N,superfamily_Ig_E-set	-	no_errors	DSCR3	HGNC	ENSG00000157538				142	0	0	78	43	35.5372
KCNJ6	0	genome.wustl.edu	37	21	39086717	39086717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	39086717	39086717	G	A	SNP	KCNJ6	ENST00000288309	human	ensembl	74_37	-1	known	missense	c.743	p.S248L	0.993	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542				108	0	0	62	36	36.7347
KCNJ6	0	genome.wustl.edu	37	21	39087187	39087187	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	39087187	39087187	G	A	SNP	KCNJ6	ENST00000288309	human	ensembl	74_37	-1	known	silent	c.273	p.F91	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542				156	0	0	80	54	40.2985
WRB	0	genome.wustl.edu	37	21	40769016	40769016	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	40769016	40769016	A	G	SNP	WRB	ENST00000466787	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WRB	HGNC	ENSG00000182093				8	0	0	3	3	50
DSCAM	0	genome.wustl.edu	37	21	41416137	41416137	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	41416137	41416137	T	A	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.5251	p.T1751S	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				73	0	0	60	30	33.3333
MX2	0	genome.wustl.edu	37	21	42780117	42780117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	42780117	42780117	C	T	SNP	MX2	ENST00000330714	human	ensembl	74_37	+1	known	missense	c.2105	p.A702V	0.505	pfam_GED,superfamily_P-loop_NTPase,smart_GED	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_P-loop_NTPase,superfamily_CH-domain,smart_Dynamin_GTPase,smart_GED,prints_Dynamin_SF	-	no_errors	MX2	HGNC	ENSG00000183486				97	0	0	63	17	21.25
PRDM15	0	genome.wustl.edu	37	21	43230570	43230570	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	43230570	43230570	G	A	SNP	PRDM15	ENST00000269844	human	ensembl	74_37	-1	known	silent	c.3690	p.C1230	0.999	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956				28	0	0	18	11	37.931
RSPH1	0	genome.wustl.edu	37	21	43897403	43897403	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	43897403	43897403	T	C	SNP	RSPH1	ENST00000291536	human	ensembl	74_37	-1	known	missense	c.725	p.E242G	0.116	NULL	pfam_MORN,smart_MORN	-	no_errors	RSPH1	HGNC	ENSG00000160188				80	0	0	39	28	41.791
HSF2BP	0	genome.wustl.edu	37	21	45033778	45033778	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	45033778	45033778	C	G	SNP	HSF2BP	ENST00000291560	human	ensembl	74_37	-1	known	missense	c.625	p.V209L	0.993	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HSF2BP	HGNC	ENSG00000160207				85	0	0	35	22	38.5965
TRAPPC10	0	genome.wustl.edu	37	21	45499951	45499951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	45499951	45499951	C	T	SNP	TRAPPC10	ENST00000291574	human	ensembl	74_37	+1	known	missense	c.1666	p.R556C	0.997	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218				55	0	0	49	5	9.25926
TRPM2	0	genome.wustl.edu	37	21	45826499	45826499	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	45826499	45826499	T	G	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	missense	c.2813	p.L938R	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				17	0	0	16	14	46.6667
TRPM2	0	genome.wustl.edu	37	21	45846948	45846948	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	45846948	45846948	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	missense	c.3928	p.R1310C	1.000	superfamily_NUDIX_hydrolase_dom-like	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				20	0	0	9	4	30.7692
LRRC3	0	genome.wustl.edu	37	21	45876898	45876898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	45876898	45876898	G	A	SNP	LRRC3	ENST00000291592	human	ensembl	74_37	+1	known	missense	c.371	p.R124H	0.998	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC3	HGNC	ENSG00000160233				68	0	0	53	19	26.3889
TSPEAR	0	genome.wustl.edu	37	21	45919682	45919682	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	45919682	45919682	C	A	SNP	TSPEAR	ENST00000323084	human	ensembl	74_37	-1	known	missense	c.1994	p.R665L	0.962	pfscan_EAR	pfam_EPTP,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_EAR	-	no_errors	TSPEAR	HGNC	ENSG00000175894				10	0	0	4	5	55.5556
ADARB1	0	genome.wustl.edu	37	21	46604910	46604910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	46604910	46604910	C	T	SNP	ADARB1	ENST00000360697	human	ensembl	74_37	+1	known	missense	c.1589	p.T530M	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,superfamily_Cytokine_IL1-like,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381				181	1	0.549451	116	33	22.1477
SLC19A1	0	genome.wustl.edu	37	21	46951974	46951974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	46951974	46951974	G	A	SNP	SLC19A1	ENST00000311124	human	ensembl	74_37	-1	known	missense	c.278	p.T93M	1.000	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A1	HGNC	ENSG00000173638				55	0	0	61	16	20.7792
MCM3AP	0	genome.wustl.edu	37	21	47684123	47684123	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	47684123	47684123	C	A	SNP	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	silent	c.3243	p.A1081	0.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				22	0	0	14	16	53.3333
PCNT	0	genome.wustl.edu	37	21	47754606	47754606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	47754606	47754606	G	A	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.563	p.S188N	0.015	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				110	0	0	62	26	29.5455
PCNT	0	genome.wustl.edu	37	21	47832851	47832851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	47832851	47832851	C	T	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.6095	p.S2032L	0.994	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				106	0	0	54	38	41.3043
CCT8L2	0	genome.wustl.edu	37	22	17072817	17072817	+	Silent	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	17072817	17072817	C	G	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	silent	c.624	p.L208	0.031	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				125	0	0	108	8	6.89655
CECR6	0	genome.wustl.edu	37	22	17601013	17601013	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	17601013	17601013	C	T	SNP	CECR6	ENST00000331437	human	ensembl	74_37	-1	known	silent	c.1005	p.T335	1.000	NULL	NULL	-	no_errors	CECR6	HGNC	ENSG00000183307				80	0	0	37	26	41.2698
CECR5	0	genome.wustl.edu	37	22	17619093	17619093	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	17619093	17619093	C	A	SNP	CECR5	ENST00000336737	human	ensembl	74_37	-1	known	missense	c.1090	p.G364C	1.000	superfamily_HAD-like_dom	superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_CECR5,tigrfam_HAD-SF_hydro_IIA	-	no_errors	CECR5	HGNC	ENSG00000069998				74	0	0	39	19	32.7586
CECR1	0	genome.wustl.edu	37	22	17670868	17670868	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	17670868	17670868	T	C	SNP	CECR1	ENST00000262607	human	ensembl	74_37	-1	known	silent	c.936	p.R312	0.109	pfam_A/AMP_deaminase_dom,tigrfam_Ad_deam-like	pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like	-	no_errors	CECR1	HGNC	ENSG00000093072				97	0	0	44	26	37.1429
BCL2L13	0	genome.wustl.edu	37	22	18209583	18209583	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	18209583	18209583	G	A	SNP	BCL2L13	ENST00000317582	human	ensembl	74_37	+1	known	nonsense	c.741	p.W247*	1.000	NULL	pfam_Blc2_fam,pfscan_Bcl2-like	-	no_errors	BCL2L13	HGNC	ENSG00000099968				88	0	0	51	5	8.92857
MICAL3	0	genome.wustl.edu	37	22	18310435	18310435	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	18310435	18310435	C	T	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	silent	c.3168	p.P1056	0.001	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				10	0	0	3	3	50
DGCR6	0	genome.wustl.edu	37	22	18893922	18893922	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	18893922	18893922	C	T	SNP	DGCR6	ENST00000331444	human	ensembl	74_37	+1	known	missense	c.35	p.A12V	0.080	pfam_DGCR6	pfam_DGCR6	-	no_errors	DGCR6	HGNC	ENSG00000183628				11	0	0	16	10	38.4615
C22orf29	0	genome.wustl.edu	37	22	19839687	19839687	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	19839687	19839687	G	A	SNP	C22orf29	ENST00000328554	human	ensembl	74_37	-1	known	missense	c.98	p.A33V	0.001	NULL	NULL	-	no_errors	C22orf29	HGNC	ENSG00000215012				153	0	0	83	45	35.1562
KLHL22	0	genome.wustl.edu	37	22	20796663	20796663	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	20796663	20796663	G	A	SNP	KLHL22	ENST00000328879	human	ensembl	74_37	-1	known	silent	c.1602	p.H534	0.478	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL22	HGNC	ENSG00000099910				79	0	0	60	24	28.5714
PPM1F	0	genome.wustl.edu	37	22	22300339	22300339	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	22300339	22300339	G	A	SNP	PPM1F	ENST00000263212	human	ensembl	74_37	-1	known	nonsense	c.82	p.Q28*	0.000	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1F	HGNC	ENSG00000100034				106	0	0	44	20	31.25
PPM1F	0	genome.wustl.edu	37	22	22300347	22300347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	22300347	22300347	G	A	SNP	PPM1F	ENST00000263212	human	ensembl	74_37	-1	known	missense	c.74	p.T25M	0.000	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1F	HGNC	ENSG00000100034				109	0	0	46	19	29.2308
GNAZ	0	genome.wustl.edu	37	22	23438280	23438280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	23438280	23438280	C	T	SNP	GNAZ	ENST00000248996	human	ensembl	74_37	+1	known	missense	c.398	p.A133V	0.968	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266				100	0	0	53	38	41.7582
BCR	0	genome.wustl.edu	37	22	23596096	23596096	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	23596096	23596096	C	T	SNP	BCR	ENST00000305877	human	ensembl	74_37	+1	known	missense	c.1390	p.P464S	0.998	NULL	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716				59	0	0	24	16	40
BCR	0	genome.wustl.edu	37	22	23656168	23656168	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	23656168	23656168	G	A	SNP	BCR	ENST00000305877	human	ensembl	74_37	+1	known	silent	c.3471	p.P1157	0.395	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716				200	1	0.497512	123	60	32.7869
RGL4	0	genome.wustl.edu	37	22	24039376	24039376	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	24039376	24039376	G	A	SNP	RGL4	ENST00000290691	human	ensembl	74_37	+1	known	missense	c.1180	p.G394R	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	-	no_errors	RGL4	HGNC	ENSG00000159496				154	0	0	88	29	24.7863
SUSD2	0	genome.wustl.edu	37	22	24583316	24583316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	24583316	24583316	G	A	SNP	SUSD2	ENST00000358321	human	ensembl	74_37	+1	known	missense	c.1789	p.G597R	0.996	pfam_VWF_type-D,smart_VWF_type-D	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Sushi_SCR_CCP,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994				83	0	0	38	19	33.3333
SPECC1L	0	genome.wustl.edu	37	22	24726395	24726395	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	24726395	24726395	C	T	SNP	SPECC1L	ENST00000314328	human	ensembl	74_37	+1	known	missense	c.2392	p.R798C	1.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_bHLH_dom,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1L	HGNC	ENSG00000100014				103	0	0	68	17	20
GGT1	0	genome.wustl.edu	37	22	25019812	25019812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	25019812	25019812	G	A	SNP	GGT1	ENST00000248923	human	ensembl	74_37	+1	known	missense	c.949	p.V317I	1.000	pfam_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031				43	0	0	28	14	33.3333
GGT1	0	genome.wustl.edu	37	22	25024766	25024766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	25024766	25024766	C	T	SNP	GGT1	ENST00000248923	human	ensembl	74_37	+1	known	missense	c.1670	p.A557V	1.000	pfam_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031				30	0	0	20	12	37.5
PIWIL3	0	genome.wustl.edu	37	22	25155856	25155856	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	25155856	25155856	C	G	SNP	PIWIL3	ENST00000332271	human	ensembl	74_37	-1	known	missense	c.203	p.G68A	0.000	NULL	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL3	HGNC	ENSG00000184571				674	0	0	380	102	21.1618
CRYBB2	0	genome.wustl.edu	37	22	25617439	25617439	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	25617439	25617439	C	A	SNP	CRYBB2	ENST00000398215	human	ensembl	74_37	+1	known	missense	c.43	p.L15I	1.000	NULL	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB2	HGNC	ENSG00000244752				61	0	0	43	10	18.8679
HPS4	0	genome.wustl.edu	37	22	26859915	26859915	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	26859915	26859915	G	A	SNP	HPS4	ENST00000398141	human	ensembl	74_37	-1	known	silent	c.1720	p.L574	0.633	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099				72	0	0	24	20	45.4545
HPS4	0	genome.wustl.edu	37	22	26860019	26860019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	26860019	26860019	C	T	SNP	HPS4	ENST00000398141	human	ensembl	74_37	-1	known	missense	c.1616	p.S539N	0.000	NULL	NULL	-	no_errors	HPS4	HGNC	ENSG00000100099				107	0	0	53	33	38.3721
CRYBA4	0	genome.wustl.edu	37	22	27026389	27026389	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	27026389	27026389	C	T	SNP	CRYBA4	ENST00000354760	human	ensembl	74_37	+1	known	missense	c.529	p.R177W	0.600	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA4	HGNC	ENSG00000196431				30	0	0	19	20	51.2821
RASL10A	0	genome.wustl.edu	37	22	29709555	29709555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	29709555	29709555	G	A	SNP	RASL10A	ENST00000216101	human	ensembl	74_37	-1	known	missense	c.347	p.P116L	0.986	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase	-	no_errors	RASL10A	HGNC	ENSG00000100276				20	0	0	16	4	20
AP1B1	0	genome.wustl.edu	37	22	29815196	29815196	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	29815196	29815196	T	C	SNP	AP1B1	ENST00000415447	human	ensembl	74_37	-1	known	missense	c.91	p.K31E	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				213	0	0	131	35	21.0843
MTMR3	0	genome.wustl.edu	37	22	30416736	30416736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	30416736	30416736	C	T	SNP	MTMR3	ENST00000401950	human	ensembl	74_37	+1	known	missense	c.3088	p.R1030C	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330				72	0	0	53	7	11.6667
PES1	0	genome.wustl.edu	37	22	30980610	30980610	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	30980610	30980610	C	T	SNP	PES1	ENST00000354694	human	ensembl	74_37	-1	known	missense	c.463	p.V155M	1.000	pfam_Pescadillo	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029				22	0	0	32	4	11.1111
INPP5J	0	genome.wustl.edu	37	22	31523368	31523368	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	31523368	31523368	G	A	SNP	INPP5J	ENST00000331075	human	ensembl	74_37	+1	known	missense	c.1637	p.R546H	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133				25	0	0	18	9	33.3333
DEPDC5	0	genome.wustl.edu	37	22	32218710	32218710	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	32218710	32218710	A	G	SNP	DEPDC5	ENST00000266091	human	ensembl	74_37	+1	known	missense	c.2038	p.M680V	0.997	NULL	pfam_IML1,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150				50	0	0	23	10	30.303
BPIFC	0	genome.wustl.edu	37	22	32841856	32841856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	32841856	32841856	C	T	SNP	BPIFC	ENST00000300399	human	ensembl	74_37	-1	known	missense	c.502	p.A168T	0.890	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFC	HGNC	ENSG00000184459				60	0	0	24	22	47.8261
LARGE	0	genome.wustl.edu	37	22	33673216	33673216	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	33673216	33673216	C	T	SNP	LARGE	ENST00000354992	human	ensembl	74_37	-1	known	missense	c.1903	p.A635T	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	LARGE	HGNC	ENSG00000133424				54	0	0	21	33	61.1111
ISX	0	genome.wustl.edu	37	22	35481594	35481594	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	35481594	35481594	G	T	SNP	ISX	ENST00000308700	human	ensembl	74_37	+1	known	missense	c.646	p.G216C	0.020	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ISX	HGNC	ENSG00000175329				201	0	0	142	11	7.18954
APOL2	0	genome.wustl.edu	37	22	36624263	36624263	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	36624263	36624263	G	T	SNP	APOL2	ENST00000249066	human	ensembl	74_37	-1	known	missense	c.201	p.D67E	0.001	pfam_ApoL	pfam_ApoL	-	no_errors	APOL2	HGNC	ENSG00000128335				209	0	0	98	83	45.8564
EIF3D	0	genome.wustl.edu	37	22	36912576	36912576	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	36912576	36912576	G	A	SNP	EIF3D	ENST00000216190	human	ensembl	74_37	-1	known	silent	c.1155	p.N385	1.000	pfam_eIF3d,pirsf_eIF3d	pfam_eIF3d,pirsf_eIF3d	-	no_errors	EIF3D	HGNC	ENSG00000100353				286	0	0	208	19	8.37004
KCTD17	0	genome.wustl.edu	37	22	37457620	37457620	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	37457620	37457620	G	C	SNP	KCTD17	ENST00000403888	human	ensembl	74_37	+1	known	missense	c.847	p.V283L	0.006	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD17	HGNC	ENSG00000100379				19	0	0	7	12	63.1579
TMPRSS6	0	genome.wustl.edu	37	22	37462147	37462147	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	37462147	37462147	G	A	SNP	TMPRSS6	ENST00000381792	human	ensembl	74_37	-1	known	silent	c.2448	p.I816	0.934	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS6	HGNC	ENSG00000187045				94	0	0	44	35	44.3038
ELFN2	0	genome.wustl.edu	37	22	37770482	37770482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	37770482	37770482	G	A	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	missense	c.1093	p.R365C	1.000	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				139	0	0	85	22	20.5607
GGA1	0	genome.wustl.edu	37	22	38014500	38014500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	38014500	38014500	G	A	SNP	GGA1	ENST00000343632	human	ensembl	74_37	+1	known	missense	c.250	p.E84K	1.000	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pfscan_VHS	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA1	HGNC	ENSG00000100083				40	0	0	28	6	17.6471
TRIOBP	0	genome.wustl.edu	37	22	38165112	38165112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	38165112	38165112	C	T	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.6653	p.A2218V	0.832	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				51	0	0	35	16	31.3725
H1F0	0	genome.wustl.edu	37	22	38201808	38201808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	38201808	38201808	G	A	SNP	H1F0	ENST00000340857	human	ensembl	74_37	+1	known	missense	c.257	p.G86E	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	H1F0	HGNC	ENSG00000189060				140	0	0	93	56	37.5839
BAIAP2L2	0	genome.wustl.edu	37	22	38481351	38481351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	38481351	38481351	G	A	SNP	BAIAP2L2	ENST00000381669	human	ensembl	74_37	-1	known	missense	c.1546	p.R516C	0.970	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L2	HGNC	ENSG00000128298				32	0	0	33	20	37.7358
PLA2G6	0	genome.wustl.edu	37	22	38565404	38565404	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	38565404	38565404	G	T	SNP	PLA2G6	ENST00000332509	human	ensembl	74_37	-1	known	silent	c.30	p.T10	0.996	NULL	pfam_Ankyrin_rpt,pfam_Patatin/PLipase_A2-rel,superfamily_Ankyrin_rpt-contain_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PLA2G6	HGNC	ENSG00000184381				44	0	0	23	16	41.0256
CSNK1E	0	genome.wustl.edu	37	22	38690122	38690122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	38690122	38690122	G	A	SNP	CSNK1E	ENST00000359867	human	ensembl	74_37	-1	known	missense	c.1211	p.A404V	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1E	HGNC	ENSG00000213923				18	0	0	17	13	43.3333
ENSG00000225450	0	genome.wustl.edu	37	22	39135044	39135044	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	39135044	39135044	C	T	SNP	ENSG00000225450	ENST00000416406	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP3-508I15.14	Clone_based_vega_gene	ENSG00000225450				9	0	0	1	4	80
CBX6	0	genome.wustl.edu	37	22	39262535	39262535	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	39262535	39262535	G	A	SNP	CBX6	ENST00000407418	human	ensembl	74_37	-1	known	silent	c.918	p.S306	0.993	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX6	HGNC	ENSG00000183741				9	0	0	11	8	42.1053
CBX6	0	genome.wustl.edu	37	22	39263061	39263061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	39263061	39263061	C	T	SNP	CBX6	ENST00000407418	human	ensembl	74_37	-1	known	missense	c.392	p.R131H	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX6	HGNC	ENSG00000183741				19	0	0	20	10	33.3333
CBX7	0	genome.wustl.edu	37	22	39529913	39529913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	39529913	39529913	G	A	SNP	CBX7	ENST00000216133	human	ensembl	74_37	-1	known	missense	c.739	p.R247C	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX7	HGNC	ENSG00000100307				77	0	0	47	38	44.7059
TAB1	0	genome.wustl.edu	37	22	39811635	39811635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	39811635	39811635	G	A	SNP	TAB1	ENST00000216160	human	ensembl	74_37	+1	known	missense	c.301	p.D101N	0.989	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	TAB1	HGNC	ENSG00000100324				46	0	0	43	16	27.1186
ENSG00000235513	0	genome.wustl.edu	37	22	41613088	41613088	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	41613088	41613088	C	T	SNP	ENSG00000235513	ENST00000441316	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-756G23.5	Clone_based_vega_gene	ENSG00000235513				35	0	0	56	14	20
RANGAP1	0	genome.wustl.edu	37	22	41647028	41647028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	41647028	41647028	G	A	SNP	RANGAP1	ENST00000356244	human	ensembl	74_37	-1	known	missense	c.1466	p.A489V	0.975	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401				82	0	0	50	4	7.40741
RANGAP1	0	genome.wustl.edu	37	22	41647047	41647047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	41647047	41647047	C	T	SNP	RANGAP1	ENST00000356244	human	ensembl	74_37	-1	known	missense	c.1447	p.E483K	0.965	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401				77	0	0	51	5	8.92857
RANGAP1	0	genome.wustl.edu	37	22	41676983	41676983	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	41676983	41676983	C	T	SNP	RANGAP1	ENST00000356244	human	ensembl	74_37	-1	known	silent	c.66	p.Q22	1.000	NULL	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401				83	0	0	36	23	38.9831
MEI1	0	genome.wustl.edu	37	22	42139162	42139162	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	42139162	42139162	G	A	SNP	MEI1	ENST00000401548	human	ensembl	74_37	+1	known	silent	c.1410	p.A470	0.176	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077				32	0	0	30	15	33.3333
MEI1	0	genome.wustl.edu	37	22	42141893	42141893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	42141893	42141893	G	A	SNP	MEI1	ENST00000401548	human	ensembl	74_37	+1	known	missense	c.1543	p.A515T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077				44	0	0	23	21	47.7273
FAM109B	0	genome.wustl.edu	37	22	42473684	42473684	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	42473684	42473684	C	T	SNP	FAM109B	ENST00000321753	human	ensembl	74_37	+1	known	silent	c.387	p.R129	0.453	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FAM109B	HGNC	ENSG00000177096				103	0	0	51	46	47.4227
CYB5R3	0	genome.wustl.edu	37	22	43015861	43015861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	43015861	43015861	C	T	SNP	CYB5R3	ENST00000361740	human	ensembl	74_37	-1	known	missense	c.923	p.G308D	0.995	pfam_OxRdtase_FAD/NAD-bd,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	-	no_errors	CYB5R3	HGNC	ENSG00000100243				13	0	0	10	10	50
CYB5R3	0	genome.wustl.edu	37	22	43019833	43019833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	43019833	43019833	C	T	SNP	CYB5R3	ENST00000361740	human	ensembl	74_37	-1	known	missense	c.794	p.R265H	0.315	pfam_OxRdtase_FAD/NAD-bd	pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	-	no_errors	CYB5R3	HGNC	ENSG00000100243				109	0	0	72	31	30.0971
PNPLA5	0	genome.wustl.edu	37	22	44287022	44287022	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	44287022	44287022	G	A	SNP	PNPLA5	ENST00000216177	human	ensembl	74_37	-1	known	silent	c.346	p.L116	0.818	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA5	HGNC	ENSG00000100341				39	0	0	23	16	41.0256
SAMM50	0	genome.wustl.edu	37	22	44385033	44385033	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	44385033	44385033	A	G	SNP	SAMM50	ENST00000350028	human	ensembl	74_37	+1	known	missense	c.1118	p.H373R	1.000	pfam_Bac_surfAg_D15	pfam_Bac_surfAg_D15	-	no_errors	SAMM50	HGNC	ENSG00000100347				169	0	0	68	41	37.6147
ARHGAP8	0	genome.wustl.edu	37	22	45243858	45243858	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	45243858	45243858	C	T	SNP	ARHGAP8	ENST00000517296	human	ensembl	74_37	+1	known	missense	c.1306	p.R436C	0.032	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_HbrB,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP8	HGNC	ENSG00000241484				54	0	0	74	7	8.64198
PHF21B	0	genome.wustl.edu	37	22	45309752	45309752	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	45309752	45309752	C	T	SNP	PHF21B	ENST00000313237	human	ensembl	74_37	-1	known	missense	c.781	p.A261T	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21B	HGNC	ENSG00000056487				118	0	0	64	49	43.3628
TRMU	0	genome.wustl.edu	37	22	46742425	46742425	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	46742425	46742425	G	A	SNP	TRMU	ENST00000290846	human	ensembl	74_37	+1	known	silent	c.462	p.R154	0.883	pfam_tRNA-specific_2-thiouridylase,tigrfam_tRNA-specific_2-thiouridylase	pfam_tRNA-specific_2-thiouridylase,pfam_ThiI_C_dom,pfam_NAD/GMP_synthase,tigrfam_tRNA-specific_2-thiouridylase	-	no_errors	TRMU	HGNC	ENSG00000100416				136	0	0	62	16	20.5128
GRAMD4	0	genome.wustl.edu	37	22	47069661	47069661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	47069661	47069661	G	A	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	missense	c.1334	p.G445D	1.000	smart_GRAM	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240				190	0	0	159	90	36.1446
BRD1	0	genome.wustl.edu	37	22	50217466	50217466	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	50217466	50217466	T	A	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	missense	c.500	p.E167V	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425				88	0	0	45	31	40.7895
MOV10L1	0	genome.wustl.edu	37	22	50563916	50563916	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	50563916	50563916	C	T	SNP	MOV10L1	ENST00000262794	human	ensembl	74_37	+1	known	silent	c.1665	p.S555	0.712	NULL	superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold	-	no_errors	MOV10L1	HGNC	ENSG00000073146				92	0	0	34	24	41.3793
MAPK12	0	genome.wustl.edu	37	22	50689187	50689187	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	50689187	50689187	C	T	SNP	MAPK12	ENST00000497036	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.063	-	-	-	no_errors	MAPK12	HGNC	ENSG00000188130				14	0	0	5	5	50
PPP6R2	0	genome.wustl.edu	37	22	50876602	50876602	+	Splice_Site	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	50876602	50876602	G	A	SNP	PPP6R2	ENST00000216061	human	ensembl	74_37	+1	known	splice_site	c.1840-1	e16-1	1.000	-	-	-	no_errors	PPP6R2	HGNC	ENSG00000100239				170	0	0	107	60	35.9281
SBF1	0	genome.wustl.edu	37	22	50893457	50893457	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	50893457	50893457	G	A	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.4669	p.R1557C	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				93	0	0	44	21	32.3077
LMF2	0	genome.wustl.edu	37	22	50943916	50943916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	50943916	50943916	C	T	SNP	LMF2	ENST00000474879	human	ensembl	74_37	-1	known	missense	c.967	p.V323I	0.000	pfam_LMF	pfam_LMF	-	no_errors	LMF2	HGNC	ENSG00000100258				107	0	0	73	43	37.069
SHANK3	0	genome.wustl.edu	37	22	51117057	51117057	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	51117057	51117057	G	A	SNP	SHANK3	ENST00000262795	human	ensembl	74_37	+1	known	silent	c.384	p.T128	0.324	superfamily_Ankyrin_rpt-contain_dom	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322				41	0	0	17	11	39.2857
SENP7	0	genome.wustl.edu	37	3	101085430	101085430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	101085430	101085430	C	T	SNP	SENP7	ENST00000394095	human	ensembl	74_37	-1	known	missense	c.1162	p.G388S	0.011	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP7	HGNC	ENSG00000138468				118	0	0	33	19	36.5385
CEP97	0	genome.wustl.edu	37	3	101474321	101474321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	101474321	101474321	G	A	SNP	CEP97	ENST00000327230	human	ensembl	74_37	+1	known	missense	c.776	p.R259Q	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CEP97	HGNC	ENSG00000182504				82	0	0	34	33	49.2537
VHL	0	genome.wustl.edu	37	3	10188237	10188237	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	10188237	10188237	G	T	SNP	VHL	ENST00000256474	human	ensembl	74_37	+1	known	missense	c.380	p.G127V	1.000	pfam_VHL_tumour_suppress_b/a_dom,superfamily_VHL_tumour_suppress_b/a_dom	pfam_VHL_tumour_suppress_b/a_dom,superfamily_VHL_tumour_suppress_b/a_dom	-	no_errors	VHL	HGNC	ENSG00000134086				191	0	0	84	40	32.2581
ATP2B2	0	genome.wustl.edu	37	3	10370624	10370624	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	10370624	10370624	C	T	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	silent	c.3606	p.P1202	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B2	HGNC	ENSG00000157087				94	0	0	42	32	43.2432
ATP2B2	0	genome.wustl.edu	37	3	10430087	10430087	+	Splice_Site	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	10430087	10430087	C	A	SNP	ATP2B2	ENST00000352432	human	ensembl	74_37	-1	known	splice_site	c.782-1	e5-1	1.000	-	-	-	no_errors	ATP2B2	HGNC	ENSG00000157087				165	0	0	92	64	41.0256
ALCAM	0	genome.wustl.edu	37	3	105266081	105266081	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	105266081	105266081	A	G	SNP	ALCAM	ENST00000306107	human	ensembl	74_37	+1	known	missense	c.1193	p.E398G	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ALCAM	HGNC	ENSG00000170017				118	0	0	45	20	30.7692
DZIP3	0	genome.wustl.edu	37	3	108363512	108363512	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	108363512	108363512	A	G	SNP	DZIP3	ENST00000361582	human	ensembl	74_37	+1	known	missense	c.1643	p.D548G	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919				120	0	0	50	32	39.0244
TRAT1	0	genome.wustl.edu	37	3	108541693	108541693	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	108541693	108541693	C	A	SNP	TRAT1	ENST00000493604	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	TRAT1	HGNC	ENSG00000163519				53	0	0	25	16	39.0244
PVRL3	0	genome.wustl.edu	37	3	110830886	110830886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	110830886	110830886	C	T	SNP	PVRL3	ENST00000485303	human	ensembl	74_37	+1	known	missense	c.170	p.A57V	1.000	NULL	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	PVRL3	HGNC	ENSG00000177707				48	0	0	22	7	24.1379
CCDC80	0	genome.wustl.edu	37	3	112337840	112337840	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	112337840	112337840	A	G	SNP	CCDC80	ENST00000206423	human	ensembl	74_37	-1	known	missense	c.2147	p.L716P	1.000	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986				105	0	0	44	9	16.9811
SIDT1	0	genome.wustl.edu	37	3	113327011	113327011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	113327011	113327011	C	T	SNP	SIDT1	ENST00000393830	human	ensembl	74_37	+1	known	missense	c.1549	p.R517C	0.910	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858				183	0	0	66	50	43.1034
KIAA1407	0	genome.wustl.edu	37	3	113697048	113697048	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	113697048	113697048	G	A	SNP	KIAA1407	ENST00000295878	human	ensembl	74_37	-1	known	missense	c.2591	p.A864V	0.000	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617				121	0	0	54	43	44.3299
B4GALT4	0	genome.wustl.edu	37	3	118948986	118948986	+	RNA	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	118948986	118948986	C	G	SNP	B4GALT4	ENST00000460395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	B4GALT4	HGNC	ENSG00000121578				82	0	0	40	17	29.8246
TMEM39A	0	genome.wustl.edu	37	3	119165958	119165958	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	119165958	119165958	A	G	SNP	TMEM39A	ENST00000319172	human	ensembl	74_37	-1	known	missense	c.482	p.V161A	1.000	pfam_Uncharacterised_TMEM39	pfam_Uncharacterised_TMEM39	-	no_errors	TMEM39A	HGNC	ENSG00000176142				75	0	0	28	15	34.8837
PLA1A	0	genome.wustl.edu	37	3	119325724	119325724	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	119325724	119325724	G	A	SNP	PLA1A	ENST00000273371	human	ensembl	74_37	+1	known	silent	c.177	p.S59	0.001	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	PLA1A	HGNC	ENSG00000144837				209	0	0	114	58	33.7209
STXBP5L	0	genome.wustl.edu	37	3	121132132	121132132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	121132132	121132132	C	T	SNP	STXBP5L	ENST00000273666	human	ensembl	74_37	+1	known	missense	c.3148	p.R1050W	1.000	pfam_Lgl_C_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5L	HGNC	ENSG00000145087				95	0	0	35	21	37.5
IQCB1	0	genome.wustl.edu	37	3	121500637	121500637	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	121500637	121500637	G	A	SNP	IQCB1	ENST00000310864	human	ensembl	74_37	-1	known	nonsense	c.1363	p.R455*	0.992	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCB1	HGNC	ENSG00000173226				100	0	0	27	23	46
DIRC2	0	genome.wustl.edu	37	3	122545749	122545749	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	122545749	122545749	C	A	SNP	DIRC2	ENST00000261038	human	ensembl	74_37	+1	known	silent	c.540	p.A180	0.994	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	DIRC2	HGNC	ENSG00000138463				141	0	0	58	40	40.8163
MYLK	0	genome.wustl.edu	37	3	123332966	123332966	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	123332966	123332966	C	A	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	nonsense	c.5731	p.E1911*	1.000	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				255	0	0	84	66	44
MYLK	0	genome.wustl.edu	37	3	123401075	123401075	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	123401075	123401075	A	G	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	silent	c.3648	p.T1216	0.912	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				12	0	0	12	7	36.8421
ITGB5	0	genome.wustl.edu	37	3	124515331	124515331	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	124515331	124515331	A	T	SNP	ITGB5	ENST00000296181	human	ensembl	74_37	-1	known	missense	c.1597	p.C533S	1.000	pirsf_Integrin_bsu,pfam_EGF_extracell,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	-	no_errors	ITGB5	HGNC	ENSG00000082781				115	0	0	94	35	27.1318
CCDC37	0	genome.wustl.edu	37	3	126133119	126133119	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	126133119	126133119	C	A	SNP	CCDC37	ENST00000510833	human	ensembl	74_37	+1	putative	missense	c.322	p.L108I	0.001	NULL	NULL	-	no_errors	CCDC37	HGNC	ENSG00000163885				57	0	0	28	21	42.8571
ZXDC	0	genome.wustl.edu	37	3	126160621	126160621	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	126160621	126160621	A	G	SNP	ZXDC	ENST00000389709	human	ensembl	74_37	-1	known	missense	c.2381	p.V794A	0.119	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDC	HGNC	ENSG00000070476				66	0	0	28	23	45.098
TPRA1	0	genome.wustl.edu	37	3	127294000	127294000	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	127294000	127294000	G	A	SNP	TPRA1	ENST00000465915	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TPRA1	HGNC	ENSG00000163870				29	0	0	26	18	40.9091
COPG1	0	genome.wustl.edu	37	3	128979574	128979574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	128979574	128979574	C	T	SNP	COPG1	ENST00000314797	human	ensembl	74_37	+1	known	missense	c.1052	p.T351M	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Coatomer_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_gsu_app_Ig-like-sub,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_Coatomer/calthrin_app_sub_C,pirsf_Coatomer_gsu	-	no_errors	COPG1	HGNC	ENSG00000181789				102	0	0	59	34	36.5591
RHO	0	genome.wustl.edu	37	3	129247930	129247930	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	129247930	129247930	C	A	SNP	RHO	ENST00000296271	human	ensembl	74_37	+1	known	silent	c.354	p.T118	0.003	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_Rhodopsin_N,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Rhodopsin,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	RHO	HGNC	ENSG00000163914				113	0	0	65	30	31.5789
TMCC1	0	genome.wustl.edu	37	3	129370588	129370588	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	129370588	129370588	C	T	SNP	TMCC1	ENST00000393238	human	ensembl	74_37	-1	known	silent	c.1698	p.Q566	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765				120	0	0	54	33	37.931
COL6A6	0	genome.wustl.edu	37	3	130284123	130284123	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	130284123	130284123	G	T	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.947	p.R316M	0.692	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				145	0	0	73	42	36.5217
COL6A6	0	genome.wustl.edu	37	3	130285766	130285766	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	130285766	130285766	G	A	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	silent	c.1503	p.K501	0.474	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				114	0	0	74	42	36.2069
COL6A6	0	genome.wustl.edu	37	3	130340717	130340717	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	130340717	130340717	A	G	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.4868	p.Q1623R	1.000	pfam_Collagen	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				68	0	0	21	17	44.7368
ATP2C1	0	genome.wustl.edu	37	3	130649267	130649267	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	130649267	130649267	G	A	SNP	ATP2C1	ENST00000393221	human	ensembl	74_37	+1	known	missense	c.116	p.R39H	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C1	HGNC	ENSG00000017260				59	0	0	13	10	43.4783
NEK11	0	genome.wustl.edu	37	3	131068501	131068501	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	131068501	131068501	T	C	SNP	NEK11	ENST00000383366	human	ensembl	74_37	+1	known	missense	c.1819	p.C607R	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK11	HGNC	ENSG00000114670				105	0	0	42	20	32.2581
DNAJC13	0	genome.wustl.edu	37	3	132196986	132196986	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	132196986	132196986	T	C	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	splice_site	c.2709+2	e23+2	1.000	-	-	-	no_errors	DNAJC13	HGNC	ENSG00000138246				83	0	0	58	4	6.45161
ACAD11	0	genome.wustl.edu	37	3	132360908	132360908	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	132360908	132360908	T	C	SNP	ACAD11	ENST00000264990	human	ensembl	74_37	-1	known	missense	c.445	p.T149A	0.111	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303				138	0	0	57	38	40
TF	0	genome.wustl.edu	37	3	133494292	133494292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	133494292	133494292	C	T	SNP	TF	ENST00000402696	human	ensembl	74_37	+1	known	missense	c.1703	p.P568L	0.000	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	TF	HGNC	ENSG00000091513				145	0	0	66	54	45
TF	0	genome.wustl.edu	37	3	133494370	133494370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	133494370	133494370	C	T	SNP	TF	ENST00000402696	human	ensembl	74_37	+1	known	missense	c.1781	p.A594V	0.000	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	TF	HGNC	ENSG00000091513				213	0	0	178	10	5.31915
NUP210	0	genome.wustl.edu	37	3	13384782	13384782	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	13384782	13384782	A	G	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	missense	c.2857	p.S953P	0.043	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				54	0	0	35	19	35.1852
ANAPC13	0	genome.wustl.edu	37	3	134201677	134201677	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	134201677	134201677	G	A	SNP	ANAPC13	ENST00000354910	human	ensembl	74_37	-1	known	silent	c.70	p.L24	1.000	pfam_Apc13p	pfam_Apc13p	-	no_errors	ANAPC13	HGNC	ENSG00000129055				192	0	0	74	53	41.7323
CEP63	0	genome.wustl.edu	37	3	134256004	134256004	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	134256004	134256004	G	A	SNP	CEP63	ENST00000337090	human	ensembl	74_37	+1	known	missense	c.449	p.R150H	1.000	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923				98	0	0	49	30	37.9747
CNTN6	0	genome.wustl.edu	37	3	1363376	1363376	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	1363376	1363376	G	A	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	silent	c.804	p.P268	0.144	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				133	0	0	89	48	35.0365
COPB2	0	genome.wustl.edu	37	3	139092574	139092574	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	139092574	139092574	G	A	SNP	COPB2	ENST00000333188	human	ensembl	74_37	-1	known	silent	c.828	p.C276	1.000	pirsf_COPB2,superfamily_WD40_repeat_dom	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432				69	0	0	34	13	27.6596
ZBTB38	0	genome.wustl.edu	37	3	141163125	141163125	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	141163125	141163125	C	A	SNP	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	missense	c.1898	p.P633Q	0.003	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311				140	0	0	62	36	36.7347
GRK7	0	genome.wustl.edu	37	3	141497563	141497563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	141497563	141497563	C	T	SNP	GRK7	ENST00000264952	human	ensembl	74_37	+1	known	missense	c.437	p.A146V	0.023	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK7	HGNC	ENSG00000114124				68	0	0	52	7	11.8644
ATR	0	genome.wustl.edu	37	3	142268341	142268341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	142268341	142268341	G	A	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	missense	c.3151	p.R1051C	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				24	0	0	11	5	31.25
PBX2P1	0	genome.wustl.edu	37	3	142896209	142896209	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	142896209	142896209	C	T	SNP	PBX2P1	ENST00000560287	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.973	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171				55	0	0	24	25	51.0204
C3orf58	0	genome.wustl.edu	37	3	143691373	143691373	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	143691373	143691373	T	C	SNP	C3orf58	ENST00000315691	human	ensembl	74_37	+1	known	missense	c.199	p.F67L	1.000	NULL	NULL	-	no_errors	C3orf58	HGNC	ENSG00000181744				63	0	0	36	26	41.9355
GRIP2	0	genome.wustl.edu	37	3	14549157	14549157	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	14549157	14549157	G	A	SNP	GRIP2	ENST00000273083	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596				62	0	0	35	10	22.2222
PLSCR1	0	genome.wustl.edu	37	3	146251312	146251312	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	146251312	146251312	C	T	SNP	PLSCR1	ENST00000448787	human	ensembl	74_37	-1	putative	missense	c.14	p.R5Q	0.001	NULL	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR1	HGNC	ENSG00000188313				96	0	0	41	26	38.806
HPS3	0	genome.wustl.edu	37	3	148871324	148871324	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	148871324	148871324	A	G	SNP	HPS3	ENST00000296051	human	ensembl	74_37	+1	known	missense	c.1289	p.Q430R	1.000	pirsf_HPS3	pirsf_HPS3	-	no_errors	HPS3	HGNC	ENSG00000163755				110	0	0	47	23	32.8571
TM4SF18	0	genome.wustl.edu	37	3	149051121	149051121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	149051121	149051121	G	A	SNP	TM4SF18	ENST00000296059	human	ensembl	74_37	-1	known	missense	c.49	p.L17F	0.958	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF18	HGNC	ENSG00000163762				50	0	0	43	4	8.51064
FGD5	0	genome.wustl.edu	37	3	14964573	14964573	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	14964573	14964573	G	A	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	silent	c.3828	p.S1276	0.000	pfam_Znf_FYVE,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783				83	0	0	61	33	35.1064
FAM194A	0	genome.wustl.edu	37	3	150419909	150419909	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	150419909	150419909	T	C	SNP	FAM194A	ENST00000295910	human	ensembl	74_37	-1	known	missense	c.460	p.R154G	0.608	NULL	NULL	-	no_errors	FAM194A	HGNC	ENSG00000163645				26	0	0	6	5	45.4545
MED12L	0	genome.wustl.edu	37	3	151100481	151100481	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	151100481	151100481	A	G	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.4523	p.D1508G	0.997	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				40	0	0	16	14	46.6667
ZFYVE20	0	genome.wustl.edu	37	3	15119666	15119666	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	15119666	15119666	G	T	SNP	ZFYVE20	ENST00000253699	human	ensembl	74_37	-1	known	missense	c.914	p.A305D	1.000	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381				68	0	0	38	12	24
AADAC	0	genome.wustl.edu	37	3	151531954	151531954	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	151531954	151531954	G	T	SNP	AADAC	ENST00000232892	human	ensembl	74_37	+1	known	nonsense	c.4	p.G2*	0.886	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pirsf_Arylacetamide_deacetylase	-	no_errors	AADAC	HGNC	ENSG00000114771				168	0	0	108	6	5.26316
MBNL1	0	genome.wustl.edu	37	3	152173354	152173354	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	152173354	152173354	G	A	SNP	MBNL1	ENST00000324210	human	ensembl	74_37	+1	known	missense	c.985	p.A329T	1.000	NULL	smart_Znf_CCCH	-	no_errors	MBNL1	HGNC	ENSG00000152601				144	0	0	55	25	31.25
CAPN7	0	genome.wustl.edu	37	3	15274039	15274039	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	15274039	15274039	A	G	SNP	CAPN7	ENST00000253693	human	ensembl	74_37	+1	known	missense	c.1046	p.D349G	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_MIT,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_MIT,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN7	HGNC	ENSG00000131375				75	0	0	14	15	51.7241
DHX36	0	genome.wustl.edu	37	3	154033826	154033826	+	Splice_Site	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	154033826	154033826	A	G	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	splice_site	c.368+2	e2+2	1.000	-	-	-	no_errors	DHX36	HGNC	ENSG00000174953				31	0	0	8	8	50
PLCH1	0	genome.wustl.edu	37	3	155222384	155222384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	155222384	155222384	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.1628	p.S543L	0.994	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				75	0	0	16	11	40.7407
VEPH1	0	genome.wustl.edu	37	3	157081298	157081298	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	157081298	157081298	C	A	SNP	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	missense	c.1590	p.Q530H	0.009	NULL	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415				172	0	0	50	31	38.2716
SMC4	0	genome.wustl.edu	37	3	160141302	160141302	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	160141302	160141302	A	G	SNP	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	silent	c.2109	p.K703	0.960	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				152	0	0	57	52	47.7064
PPM1L	0	genome.wustl.edu	37	3	160679656	160679656	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	160679656	160679656	C	T	SNP	PPM1L	ENST00000498165	human	ensembl	74_37	+1	known	nonsense	c.532	p.R178*	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1L	HGNC	ENSG00000163590				92	0	0	44	9	16.9811
PPM1L	0	genome.wustl.edu	37	3	160783285	160783285	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	160783285	160783285	C	T	SNP	PPM1L	ENST00000498165	human	ensembl	74_37	+1	known	silent	c.669	p.N223	0.796	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1L	HGNC	ENSG00000163590				110	0	0	52	18	25.7143
GALNT15	0	genome.wustl.edu	37	3	16217062	16217062	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	16217062	16217062	G	T	SNP	GALNT15	ENST00000339732	human	ensembl	74_37	+1	known	missense	c.404	p.W135L	0.998	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT15	HGNC	ENSG00000131386				56	0	0	26	22	45.8333
SI	0	genome.wustl.edu	37	3	164714430	164714430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	164714430	164714430	C	T	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.4585	p.D1529N	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				103	0	0	25	10	28.5714
ZBBX	0	genome.wustl.edu	37	3	166958587	166958587	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	166958587	166958587	A	G	SNP	ZBBX	ENST00000307529	human	ensembl	74_37	-1	known	silent	c.2514	p.S838	0.000	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064				81	0	0	31	21	40.3846
GOLIM4	0	genome.wustl.edu	37	3	167750483	167750483	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	167750483	167750483	T	C	SNP	GOLIM4	ENST00000470487	human	ensembl	74_37	-1	known	missense	c.1001	p.Q334R	0.995	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905				136	0	0	62	26	29.5455
PHC3	0	genome.wustl.edu	37	3	169847182	169847182	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	169847182	169847182	G	T	SNP	PHC3	ENST00000495893	human	ensembl	74_37	-1	known	missense	c.1078	p.P360T	0.993	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889				117	0	0	82	49	37.4046
RPL22L1	0	genome.wustl.edu	37	3	170586135	170586135	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	170586135	170586135	C	T	SNP	RPL22L1	ENST00000295830	human	ensembl	74_37	-1	known	silent	c.54	p.L18	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22L1	HGNC	ENSG00000163584				59	0	0	26	17	39.5349
SLC2A2	0	genome.wustl.edu	37	3	170723843	170723843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	170723843	170723843	G	A	SNP	SLC2A2	ENST00000314251	human	ensembl	74_37	-1	known	missense	c.664	p.L222F	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_2,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A2	HGNC	ENSG00000163581				74	0	0	30	18	37.5
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				105	0	0	28	17	37.7778
PEX5L	0	genome.wustl.edu	37	3	179537679	179537679	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	179537679	179537679	T	G	SNP	PEX5L	ENST00000467460	human	ensembl	74_37	-1	known	missense	c.908	p.Q303P	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757				124	0	0	39	37	48.6842
HTR3E	0	genome.wustl.edu	37	3	183822631	183822631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	183822631	183822631	G	A	SNP	HTR3E	ENST00000335304	human	ensembl	74_37	+1	known	missense	c.491	p.R164H	0.395	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Neur_channel	-	no_errors	HTR3E	HGNC	ENSG00000186038				113	1	0.877193	55	33	37.5
DVL3	0	genome.wustl.edu	37	3	183882166	183882166	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	183882166	183882166	C	A	SNP	DVL3	ENST00000313143	human	ensembl	74_37	+1	known	missense	c.343	p.P115T	1.000	NULL	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam,prints_Dishevelled_3	-	no_errors	DVL3	HGNC	ENSG00000161202				93	0	0	47	46	49.4624
AP2M1	0	genome.wustl.edu	37	3	183901269	183901269	+	Splice_Site	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	183901269	183901269	G	T	SNP	AP2M1	ENST00000292807	human	ensembl	74_37	+1	known	splice_site	c.1174-1	e11-1	1.000	-	-	-	no_errors	AP2M1	HGNC	ENSG00000161203				124	0	0	84	5	5.61798
ECE2	0	genome.wustl.edu	37	3	183976192	183976192	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	183976192	183976192	C	A	SNP	ECE2	ENST00000324557	human	ensembl	74_37	+1	known	silent	c.597	p.T199	0.994	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12	-	no_errors	ECE2	HGNC	ENSG00000145194				236	0	0	137	44	24.3094
ECE2	0	genome.wustl.edu	37	3	184009865	184009865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	184009865	184009865	C	T	SNP	ECE2	ENST00000402825	human	ensembl	74_37	+1	known	missense	c.2491	p.R831C	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194				68	0	0	49	19	27.9412
C3orf65	0	genome.wustl.edu	37	3	185434436	185434436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	185434436	185434436	C	T	SNP	C3orf65	ENST00000296270	human	ensembl	74_37	+1	known	missense	c.269	p.A90V	0.005	NULL	NULL	-	no_errors	C3orf65	HGNC	ENSG00000163915				53	0	0	28	14	33.3333
ETV5	0	genome.wustl.edu	37	3	185797727	185797727	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	185797727	185797727	C	G	SNP	ETV5	ENST00000537818	human	ensembl	74_37	-1	known	missense	c.655	p.A219P	0.799	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV5	HGNC	ENSG00000244405				112	0	0	52	18	25.7143
TPRG1	0	genome.wustl.edu	37	3	188925188	188925188	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	188925188	188925188	G	T	SNP	TPRG1	ENST00000345063	human	ensembl	74_37	+1	known	silent	c.15	p.G5	0.998	NULL	pfam_Inositol_phosphatase	-	no_errors	TPRG1	HGNC	ENSG00000188001				92	0	0	43	21	32.8125
CLDN1	0	genome.wustl.edu	37	3	190039836	190039836	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	190039836	190039836	A	G	SNP	CLDN1	ENST00000295522	human	ensembl	74_37	-1	known	missense	c.160	p.C54R	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin1,prints_Claudin14	-	no_errors	CLDN1	HGNC	ENSG00000163347				101	0	0	58	31	34.8315
CLDN16	0	genome.wustl.edu	37	3	190120187	190120187	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	190120187	190120187	G	A	SNP	CLDN16	ENST00000264734	human	ensembl	74_37	+1	known	missense	c.386	p.R129H	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin16,prints_Claudin	-	no_errors	CLDN16	HGNC	ENSG00000113946				120	0	0	63	39	38.2353
MUC4	0	genome.wustl.edu	37	3	195484043	195484043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	195484043	195484043	C	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.15143	p.S5048N	0.184	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				103	1	0.961538	78	30	27.7778
WDR53	0	genome.wustl.edu	37	3	196288312	196288312	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	196288312	196288312	G	T	SNP	WDR53	ENST00000332629	human	ensembl	74_37	-1	known	missense	c.35	p.P12H	0.953	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR53	HGNC	ENSG00000185798				48	0	0	32	14	30.4348
NCBP2	0	genome.wustl.edu	37	3	196664431	196664431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	196664431	196664431	C	T	SNP	NCBP2	ENST00000321256	human	ensembl	74_37	-1	known	missense	c.349	p.A117T	1.000	pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NCBP2	HGNC	ENSG00000114503				102	0	0	43	28	39.4366
ZNF385D	0	genome.wustl.edu	37	3	21606141	21606141	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	21606141	21606141	T	C	SNP	ZNF385D	ENST00000281523	human	ensembl	74_37	-1	known	silent	c.201	p.T67	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385D	HGNC	ENSG00000151789				71	0	0	25	16	39.0244
THRB	0	genome.wustl.edu	37	3	24193953	24193953	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	24193953	24193953	G	A	SNP	THRB	ENST00000356447	human	ensembl	74_37	-1	known	silent	c.312	p.D104	0.816	smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRB	HGNC	ENSG00000151090				57	0	0	22	5	18.5185
TGFBR2	0	genome.wustl.edu	37	3	30648432	30648432	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	30648432	30648432	T	C	SNP	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	silent	c.57	p.R19	1.000	pirsf_Transform_growth_fac-b_typ-2	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513				11	0	0	3	8	72.7273
TGFBR2	0	genome.wustl.edu	37	3	30729962	30729962	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	30729962	30729962	C	T	SNP	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	nonsense	c.1558	p.R520*	0.999	pirsf_Transform_growth_fac-b_typ-2,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513				86	0	0	51	31	37.8049
ZNF860	0	genome.wustl.edu	37	3	32030702	32030702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	32030702	32030702	C	T	SNP	ZNF860	ENST00000360311	human	ensembl	74_37	+1	known	missense	c.131	p.T44M	0.270	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF860	HGNC	ENSG00000197385				107	0	0	101	9	8.18182
CMTM8	0	genome.wustl.edu	37	3	32398895	32398895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	32398895	32398895	G	A	SNP	CMTM8	ENST00000307526	human	ensembl	74_37	+1	known	missense	c.178	p.A60T	0.997	pfam_Marvel,prints_MAL	pfam_Marvel,prints_MAL	-	no_errors	CMTM8	HGNC	ENSG00000170293				154	0	0	51	41	44.5652
CMTM6	0	genome.wustl.edu	37	3	32544163	32544163	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	32544163	32544163	G	A	SNP	CMTM6	ENST00000205636	human	ensembl	74_37	-1	known	silent	c.75	p.L25	0.511	NULL	pfam_Marvel	-	no_errors	CMTM6	HGNC	ENSG00000091317				13	0	0	7	8	53.3333
TMPPE	0	genome.wustl.edu	37	3	33135617	33135617	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	33135617	33135617	A	G	SNP	TMPPE	ENST00000342462	human	ensembl	74_37	-1	known	missense	c.71	p.M24T	1.000	NULL	pfam_PEstase_dom	-	no_errors	TMPPE	HGNC	ENSG00000188167				94	0	0	58	28	32.5581
UBP1	0	genome.wustl.edu	37	3	33467186	33467186	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	33467186	33467186	G	T	SNP	UBP1	ENST00000283628	human	ensembl	74_37	-1	known	missense	c.161	p.P54Q	1.000	NULL	pfam_CP2,superfamily_SAM/pointed	-	no_errors	UBP1	HGNC	ENSG00000153560				46	0	0	24	13	35.1351
ARPP21	0	genome.wustl.edu	37	3	35778784	35778784	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	35778784	35778784	A	G	SNP	ARPP21	ENST00000417925	human	ensembl	74_37	+1	known	missense	c.1472	p.Q491R	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995				69	0	0	46	34	42.5
DCLK3	0	genome.wustl.edu	37	3	36756838	36756838	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	36756838	36756838	A	G	SNP	DCLK3	ENST00000416516	human	ensembl	74_37	-1	known	missense	c.1928	p.V643A	0.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK3	HGNC	ENSG00000163673				60	0	0	30	14	31.8182
TRANK1	0	genome.wustl.edu	37	3	36897282	36897282	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	36897282	36897282	G	A	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.3799	p.R1267C	0.000	superfamily_P-loop_NTPase	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				205	0	0	105	77	42.3077
ITGA9	0	genome.wustl.edu	37	3	37574880	37574880	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	37574880	37574880	C	T	SNP	ITGA9	ENST00000264741	human	ensembl	74_37	+1	known	silent	c.1449	p.H483	0.481	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668				63	0	0	31	18	36.7347
VILL	0	genome.wustl.edu	37	3	38039623	38039623	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	38039623	38039623	G	A	SNP	VILL	ENST00000283713	human	ensembl	74_37	+1	known	silent	c.807	p.A269	0.231	smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				50	0	0	9	9	50
MYD88	0	genome.wustl.edu	37	3	38181445	38181445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	38181445	38181445	G	A	SNP	MYD88	ENST00000417037	human	ensembl	74_37	+1	known	missense	c.458	p.R153Q	0.378	pirsf_Myelin_different_resp_MyD88	pfam_TIR_dom,pfam_Death_domain,superfamily_DEATH-like_dom,superfamily_TIR_dom,smart_Death_domain,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_Death_domain,pfscan_TIR_dom	-	no_errors	MYD88	HGNC	ENSG00000172936				27	0	0	41	6	12.766
MYD88	0	genome.wustl.edu	37	3	38182637	38182637	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	38182637	38182637	C	T	SNP	MYD88	ENST00000417037	human	ensembl	74_37	+1	known	nonsense	c.814	p.R272*	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_TIR_dom	pfam_TIR_dom,pfam_Death_domain,superfamily_DEATH-like_dom,superfamily_TIR_dom,smart_Death_domain,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_Death_domain,pfscan_TIR_dom	-	no_errors	MYD88	HGNC	ENSG00000172936				113	0	0	86	5	5.49451
XYLB	0	genome.wustl.edu	37	3	38416746	38416746	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	38416746	38416746	C	A	SNP	XYLB	ENST00000207870	human	ensembl	74_37	+1	known	missense	c.1000	p.L334M	0.747	pfam_Carb_kinase_FGGY_C	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N	-	no_errors	XYLB	HGNC	ENSG00000093217				48	0	0	27	15	35.7143
SCN5A	0	genome.wustl.edu	37	3	38592944	38592944	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	38592944	38592944	G	C	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.4919	p.A1640G	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				150	0	0	162	12	6.89655
SCN5A	0	genome.wustl.edu	37	3	38655264	38655264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	38655264	38655264	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.673	p.R225W	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				17	0	0	9	5	35.7143
TTC21A	0	genome.wustl.edu	37	3	39178807	39178807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	39178807	39178807	C	T	SNP	TTC21A	ENST00000301819	human	ensembl	74_37	+1	known	missense	c.3403	p.R1135W	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026				40	0	0	17	10	37.037
XIRP1	0	genome.wustl.edu	37	3	39225733	39225733	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	39225733	39225733	G	T	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	missense	c.5204	p.P1735H	0.002	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				149	0	0	83	8	8.79121
CTNNB1	0	genome.wustl.edu	37	3	41267268	41267268	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	41267268	41267268	C	T	SNP	CTNNB1	ENST00000349496	human	ensembl	74_37	+1	known	silent	c.852	p.A284	0.892	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	CTNNB1	HGNC	ENSG00000168036				96	0	0	33	32	49.2308
TRAK1	0	genome.wustl.edu	37	3	42166997	42166997	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	42166997	42166997	C	T	SNP	TRAK1	ENST00000327628	human	ensembl	74_37	+1	putative	silent	c.177	p.D59	1.000	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606				108	0	0	51	27	34.6154
VIPR1	0	genome.wustl.edu	37	3	42572370	42572370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	42572370	42572370	G	A	SNP	VIPR1	ENST00000325123	human	ensembl	74_37	+1	known	missense	c.736	p.V246I	0.999	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_1	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_1,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR1	HGNC	ENSG00000114812				129	0	0	42	43	50.5882
NKTR	0	genome.wustl.edu	37	3	42662950	42662950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	42662950	42662950	G	A	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	missense	c.316	p.A106T	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				53	0	0	29	4	12.1212
NKTR	0	genome.wustl.edu	37	3	42679755	42679755	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	42679755	42679755	C	T	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	silent	c.2559	p.C853	0.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				80	0	0	47	34	41.9753
ZNF502	0	genome.wustl.edu	37	3	44763241	44763241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	44763241	44763241	C	T	SNP	ZNF502	ENST00000296091	human	ensembl	74_37	+1	known	missense	c.932	p.T311M	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF502	HGNC	ENSG00000196653				222	1	0.44843	93	47	33.5714
LIMD1	0	genome.wustl.edu	37	3	45636943	45636943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	45636943	45636943	G	A	SNP	LIMD1	ENST00000273317	human	ensembl	74_37	+1	known	missense	c.572	p.G191D	0.147	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMD1	HGNC	ENSG00000144791				104	0	0	53	34	39.0805
CCRL2	0	genome.wustl.edu	37	3	46450555	46450555	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	46450555	46450555	T	C	SNP	CCRL2	ENST00000357392	human	ensembl	74_37	+1	known	missense	c.1021	p.S341P	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	-	no_errors	CCRL2	HGNC	ENSG00000121797				201	0	0	82	56	40.5797
ALS2CL	0	genome.wustl.edu	37	3	46722884	46722884	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	46722884	46722884	C	T	SNP	ALS2CL	ENST00000318962	human	ensembl	74_37	-1	known	missense	c.1288	p.E430K	0.271	smart_MORN	pfam_MORN,pfam_VPS9,superfamily_DH-domain,smart_MORN,pfscan_VPS9	-	no_errors	ALS2CL	HGNC	ENSG00000178038				141	0	0	83	48	36.6412
CCDC12	0	genome.wustl.edu	37	3	46963601	46963601	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	46963601	46963601	G	A	SNP	CCDC12	ENST00000292314	human	ensembl	74_37	-1	known	silent	c.486	p.S162	0.989	NULL	pfam_mRNA_splic_Cwf18	-	no_errors	CCDC12	HGNC	ENSG00000160799				139	0	0	68	44	39.2857
NBEAL2	0	genome.wustl.edu	37	3	47045630	47045630	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	47045630	47045630	A	G	SNP	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	missense	c.5945	p.N1982S	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				303	0	0	187	97	34.1549
PTPN23	0	genome.wustl.edu	37	3	47451306	47451306	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	47451306	47451306	G	A	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	missense	c.2111	p.R704H	1.000	NULL	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				17	0	0	13	4	23.5294
CSPG5	0	genome.wustl.edu	37	3	47619066	47619066	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	47619066	47619066	G	A	SNP	CSPG5	ENST00000383738	human	ensembl	74_37	-1	known	silent	c.450	p.S150	0.000	pfam_Chon_Sulph_att	pfam_Chon_Sulph_att,pfam_Neural_ProG_Cyt	-	no_errors	CSPG5	HGNC	ENSG00000114646				88	0	0	79	10	11.236
DHX30	0	genome.wustl.edu	37	3	47888052	47888052	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	47888052	47888052	T	C	SNP	DHX30	ENST00000445061	human	ensembl	74_37	+1	known	missense	c.1490	p.V497A	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153				104	0	0	53	46	46.4646
PLXNB1	0	genome.wustl.edu	37	3	48455211	48455211	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	48455211	48455211	A	G	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	missense	c.4403	p.L1468S	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050				60	0	0	62	6	8.82353
PLXNB1	0	genome.wustl.edu	37	3	48461117	48461117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	48461117	48461117	C	T	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	missense	c.2578	p.A860T	0.929	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050				32	0	0	17	13	43.3333
PLXNB1	0	genome.wustl.edu	37	3	48461322	48461322	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	48461322	48461322	C	T	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	silent	c.2373	p.P791	0.002	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050				24	0	0	23	5	17.8571
SHISA5	0	genome.wustl.edu	37	3	48510575	48510575	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	48510575	48510575	G	A	SNP	SHISA5	ENST00000296444	human	ensembl	74_37	-1	known	silent	c.654	p.A218	0.000	NULL	NULL	-	no_errors	SHISA5	HGNC	ENSG00000164054				68	0	0	28	32	53.3333
SHISA5	0	genome.wustl.edu	37	3	48520624	48520624	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	48520624	48520624	C	T	SNP	SHISA5	ENST00000296444	human	ensembl	74_37	-1	known	silent	c.276	p.A92	0.000	NULL	NULL	-	no_errors	SHISA5	HGNC	ENSG00000164054				19	0	0	15	7	31.8182
PFKFB4	0	genome.wustl.edu	37	3	48573768	48573768	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	48573768	48573768	A	G	SNP	PFKFB4	ENST00000232375	human	ensembl	74_37	-1	known	missense	c.761	p.L254P	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB4	HGNC	ENSG00000114268				176	0	0	98	80	44.9438
CELSR3	0	genome.wustl.edu	37	3	48685381	48685381	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	48685381	48685381	C	T	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.7037	p.R2346H	0.044	pfam_DUF3497	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				172	0	0	102	61	37.4233
CELSR3	0	genome.wustl.edu	37	3	48685826	48685826	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	48685826	48685826	C	T	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	silent	c.6861	p.Q2287	1.000	pfam_DUF3497	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				29	0	0	19	14	42.4242
CELSR3	0	genome.wustl.edu	37	3	48690532	48690532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	48690532	48690532	C	T	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.5537	p.G1846D	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				85	0	0	75	11	12.7907
ARIH2	0	genome.wustl.edu	37	3	49011181	49011181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49011181	49011181	C	T	SNP	ARIH2	ENST00000356401	human	ensembl	74_37	+1	known	missense	c.820	p.R274W	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	ARIH2	HGNC	ENSG00000177479				71	0	0	46	23	33.3333
USP19	0	genome.wustl.edu	37	3	49148936	49148936	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49148936	49148936	C	T	SNP	USP19	ENST00000398888	human	ensembl	74_37	-1	known	missense	c.2905	p.E969K	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				74	0	0	37	38	50.6667
LAMB2	0	genome.wustl.edu	37	3	49162247	49162247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49162247	49162247	G	A	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	missense	c.2996	p.A999V	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				90	0	0	53	35	39.7727
USP4	0	genome.wustl.edu	37	3	49339872	49339872	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49339872	49339872	C	T	SNP	USP4	ENST00000265560	human	ensembl	74_37	-1	known	missense	c.1232	p.R411Q	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67	-	no_errors	USP4	HGNC	ENSG00000114316				145	0	0	59	12	16.9014
USP4	0	genome.wustl.edu	37	3	49373016	49373016	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49373016	49373016	T	C	SNP	USP4	ENST00000265560	human	ensembl	74_37	-1	known	missense	c.115	p.S39G	1.000	pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67	-	no_errors	USP4	HGNC	ENSG00000114316				80	0	0	52	16	23.5294
BSN	0	genome.wustl.edu	37	3	49699106	49699106	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49699106	49699106	C	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	silent	c.9828	p.D3276	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				100	0	0	75	39	34.2105
MST1	0	genome.wustl.edu	37	3	49722070	49722070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49722070	49722070	G	A	SNP	MST1	ENST00000449682	human	ensembl	74_37	-1	known	missense	c.1789	p.R597C	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531				127	0	0	86	57	39.8601
MST1	0	genome.wustl.edu	37	3	49722283	49722283	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49722283	49722283	C	T	SNP	MST1	ENST00000449682	human	ensembl	74_37	-1	known	missense	c.1657	p.G553S	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531				71	0	0	46	20	30.303
MST1	0	genome.wustl.edu	37	3	49725025	49725025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49725025	49725025	G	A	SNP	MST1	ENST00000449682	human	ensembl	74_37	-1	known	missense	c.319	p.R107W	1.000	pfam_PAN-1_domain,smart_Pan_app,pfscan_Pan_app	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531				96	0	0	40	21	34.4262
IP6K1	0	genome.wustl.edu	37	3	49764800	49764800	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49764800	49764800	G	T	SNP	IP6K1	ENST00000321599	human	ensembl	74_37	-1	known	missense	c.1081	p.L361M	0.140	pfam_IPK	pfam_IPK	-	no_errors	IP6K1	HGNC	ENSG00000176095				85	0	0	34	21	38.1818
CAMKV	0	genome.wustl.edu	37	3	49898998	49898998	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49898998	49898998	C	T	SNP	CAMKV	ENST00000487726	human	ensembl	74_37	-1	known	missense	c.274	p.G92R	1.000	NULL	superfamily_Kinase-like_dom	-	no_errors	CAMKV	HGNC	ENSG00000164076				79	0	0	32	24	42.8571
NPRL2	0	genome.wustl.edu	37	3	50385556	50385556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	50385556	50385556	G	A	SNP	NPRL2	ENST00000232501	human	ensembl	74_37	-1	known	missense	c.931	p.R311W	0.994	pfam_NPR2	pfam_NPR2	-	no_errors	NPRL2	HGNC	ENSG00000114388				103	0	0	40	21	34.4262
DOCK3	0	genome.wustl.edu	37	3	51392444	51392444	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	51392444	51392444	C	T	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	silent	c.4239	p.C1413	0.986	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				65	0	0	34	6	15
PARP3	0	genome.wustl.edu	37	3	51978417	51978417	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	51978417	51978417	C	T	SNP	PARP3	ENST00000398755	human	ensembl	74_37	+1	known	silent	c.345	p.G115	1.000	pfam_WGR_domain,superfamily_WGR_domain,smart_WGR_domain	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880				160	0	0	162	23	12.4324
ALAS1	0	genome.wustl.edu	37	3	52242221	52242221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	52242221	52242221	G	A	SNP	ALAS1	ENST00000310271	human	ensembl	74_37	+1	known	missense	c.1288	p.D430N	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS1	HGNC	ENSG00000023330				113	0	0	76	9	10.5882
DNAH1	0	genome.wustl.edu	37	3	52387194	52387194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	52387194	52387194	C	T	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.3103	p.R1035C	1.000	pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				46	0	0	29	18	38.2979
DNAH1	0	genome.wustl.edu	37	3	52428993	52428993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	52428993	52428993	G	A	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.10886	p.R3629H	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				25	0	0	17	14	45.1613
ITIH1	0	genome.wustl.edu	37	3	52821010	52821010	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	52821010	52821010	C	T	SNP	ITIH1	ENST00000273283	human	ensembl	74_37	+1	known	nonsense	c.1783	p.Q595*	0.022	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957				75	0	0	29	22	43.1373
SFMBT1	0	genome.wustl.edu	37	3	52950206	52950206	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	52950206	52950206	G	A	SNP	SFMBT1	ENST00000358080	human	ensembl	74_37	-1	known	silent	c.1440	p.H480	0.952	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935				73	0	0	33	25	43.1034
TKT	0	genome.wustl.edu	37	3	53275202	53275202	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	53275202	53275202	C	T	SNP	TKT	ENST00000423525	human	ensembl	74_37	-1	known	silent	c.285	p.A95	0.009	pfam_Transketolase_N	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKT	HGNC	ENSG00000163931				52	0	0	60	9	13.0435
CACNA1D	0	genome.wustl.edu	37	3	53766961	53766961	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	53766961	53766961	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.2653	p.A885T	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				80	0	0	27	27	50
CACNA1D	0	genome.wustl.edu	37	3	53845159	53845159	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	53845159	53845159	T	C	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.6272	p.L2091S	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				115	0	0	61	33	35.1064
CACNA2D3-AS1	0	genome.wustl.edu	37	3	54928704	54928704	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	54928704	54928704	G	T	SNP	CACNA2D3-AS1	ENST00000471265	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CACNA2D3-AS1	HGNC	ENSG00000243715				12	0	0	7	6	46.1538
LRTM1	0	genome.wustl.edu	37	3	54952604	54952604	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	54952604	54952604	G	A	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.920	p.A307V	0.871	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771				155	0	0	120	7	5.51181
WNT5A	0	genome.wustl.edu	37	3	55504262	55504262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	55504262	55504262	C	T	SNP	WNT5A	ENST00000264634	human	ensembl	74_37	-1	known	missense	c.1001	p.G334D	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt	-	no_errors	WNT5A	HGNC	ENSG00000114251				106	0	0	81	26	24.2991
ERC2	0	genome.wustl.edu	37	3	55922525	55922525	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	55922525	55922525	G	A	SNP	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	missense	c.2456	p.T819I	1.000	pfam_CAZ_cplx_RIM-bd_prot	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672				193	0	0	95	51	34.9315
ARHGEF3	0	genome.wustl.edu	37	3	56766423	56766423	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	56766423	56766423	C	T	SNP	ARHGEF3	ENST00000338458	human	ensembl	74_37	-1	known	silent	c.1167	p.V389	0.968	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF3	HGNC	ENSG00000163947				175	0	0	87	46	34.5865
FLNB	0	genome.wustl.edu	37	3	58080594	58080594	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	58080594	58080594	G	A	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	silent	c.819	p.Q273	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				226	1	0.440529	166	77	31.6872
PTPRG	0	genome.wustl.edu	37	3	62189140	62189140	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	62189140	62189140	G	T	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.1671	p.E557D	0.997	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				12	0	0	5	7	58.3333
FEZF2	0	genome.wustl.edu	37	3	62358365	62358365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	62358365	62358365	C	T	SNP	FEZF2	ENST00000283268	human	ensembl	74_37	-1	known	missense	c.179	p.G60D	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266				37	0	0	25	18	41.8605
CADPS	0	genome.wustl.edu	37	3	62535763	62535763	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	62535763	62535763	T	C	SNP	CADPS	ENST00000383710	human	ensembl	74_37	-1	known	missense	c.1781	p.N594S	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ca-dep_secretion_activator,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618				118	0	0	65	43	39.8148
THOC7	0	genome.wustl.edu	37	3	63820861	63820861	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	63820861	63820861	A	T	SNP	THOC7	ENST00000295899	human	ensembl	74_37	-1	known	missense	c.516	p.S172R	0.973	NULL	pfam_THOC7/Mft1	-	no_errors	THOC7	HGNC	ENSG00000163634				45	0	0	12	9	42.8571
SLC25A26	0	genome.wustl.edu	37	3	66428187	66428187	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	66428187	66428187	C	T	SNP	SLC25A26	ENST00000354883	human	ensembl	74_37	+1	known	nonsense	c.781	p.R261*	0.998	pfam_Mitochondrial_sb/sol_carrier,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A26	HGNC	ENSG00000144741				180	0	0	149	15	9.14634
FAM86DP	0	genome.wustl.edu	37	3	75475656	75475656	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	75475656	75475656	G	A	SNP	FAM86DP	ENST00000459803	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.927	-	-	-	no_errors	FAM86DP	HGNC	ENSG00000244026				56	0	0	15	51	77.2727
GRM7	0	genome.wustl.edu	37	3	7620162	7620162	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	7620162	7620162	C	T	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	silent	c.1569	p.C523	1.000	pfam_GPCR_3_9-Cys_dom	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				92	0	0	43	25	36.7647
CHMP2B	0	genome.wustl.edu	37	3	87295032	87295032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	87295032	87295032	G	A	SNP	CHMP2B	ENST00000263780	human	ensembl	74_37	+1	known	missense	c.295	p.A99T	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP2B	HGNC	ENSG00000083937				103	0	0	47	5	9.61538
EPHA3	0	genome.wustl.edu	37	3	89468423	89468423	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	89468423	89468423	A	G	SNP	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	missense	c.1957	p.K653E	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				111	0	0	30	24	44.4444
EPHA3	0	genome.wustl.edu	37	3	89521697	89521697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	89521697	89521697	C	T	SNP	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	missense	c.2774	p.T925I	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				144	0	0	55	28	33.7349
BRPF1	0	genome.wustl.edu	37	3	9786044	9786044	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	9786044	9786044	G	T	SNP	BRPF1	ENST00000383829	human	ensembl	74_37	+1	known	missense	c.2772	p.Q924H	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983				45	0	0	21	12	36.3636
DCBLD2	0	genome.wustl.edu	37	3	98568318	98568318	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	98568318	98568318	A	G	SNP	DCBLD2	ENST00000326857	human	ensembl	74_37	-1	known	silent	c.558	p.V186	0.907	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_CUB_dom,pfam_LCCL,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_LCCL,smart_CUB_dom,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD2	HGNC	ENSG00000057019				109	0	0	46	24	34.2857
SLC2A9	0	genome.wustl.edu	37	4	10022957	10022957	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	10022957	10022957	G	A	SNP	SLC2A9	ENST00000264784	human	ensembl	74_37	-1	known	silent	c.97	p.L33	0.000	superfamily_MFS_dom_general_subst_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A9	HGNC	ENSG00000109667				85	0	0	48	31	39.2405
ADH1B	0	genome.wustl.edu	37	4	100232725	100232725	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	100232725	100232725	G	T	SNP	ADH1B	ENST00000305046	human	ensembl	74_37	-1	known	missense	c.917	p.P306H	0.996	pfam_ADH_C,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH1B	HGNC	ENSG00000196616				213	0	0	107	55	33.9506
DDIT4L	0	genome.wustl.edu	37	4	101108963	101108963	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	101108963	101108963	C	A	SNP	DDIT4L	ENST00000273990	human	ensembl	74_37	-1	known	missense	c.453	p.R151S	1.000	pfam_RTP801-like	pfam_RTP801-like	-	no_errors	DDIT4L	HGNC	ENSG00000145358				97	0	0	54	11	16.9231
MANBA	0	genome.wustl.edu	37	4	103553303	103553303	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	103553303	103553303	G	A	SNP	MANBA	ENST00000226578	human	ensembl	74_37	-1	known	nonsense	c.2551	p.R851*	0.001	NULL	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323				118	0	0	59	26	30.5882
TACR3	0	genome.wustl.edu	37	4	104640312	104640312	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	104640312	104640312	T	C	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	missense	c.521	p.Y174C	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				56	0	0	32	16	33.3333
TACR3	0	genome.wustl.edu	37	4	104640558	104640558	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	104640558	104640558	T	C	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	missense	c.275	p.Y92C	0.998	prints_Neurokn_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				108	0	0	84	35	29.4118
SEC24B	0	genome.wustl.edu	37	4	110448484	110448484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	110448484	110448484	G	A	SNP	SEC24B	ENST00000265175	human	ensembl	74_37	+1	known	missense	c.2972	p.R991Q	1.000	pfam_Sec23_24_beta_S	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802				123	0	0	34	29	46.0317
RRH	0	genome.wustl.edu	37	4	110756617	110756617	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	110756617	110756617	C	T	SNP	RRH	ENST00000317735	human	ensembl	74_37	+1	known	silent	c.393	p.D131	0.057	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Peropsin	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Peropsin,prints_GPCR_Rhodpsn	-	no_errors	RRH	HGNC	ENSG00000180245				78	0	0	31	26	45.614
EGF	0	genome.wustl.edu	37	4	110902085	110902085	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	110902085	110902085	A	G	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	silent	c.2325	p.S775	0.045	pirsf_Pro-epidermal_GF,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798				178	0	0	75	50	40
ENPEP	0	genome.wustl.edu	37	4	111398197	111398197	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	111398197	111398197	G	T	SNP	ENPEP	ENST00000265162	human	ensembl	74_37	+1	known	silent	c.627	p.T209	0.007	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792				75	0	0	52	27	34.1772
ALPK1	0	genome.wustl.edu	37	4	113303616	113303616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	113303616	113303616	G	A	SNP	ALPK1	ENST00000177648	human	ensembl	74_37	+1	known	missense	c.184	p.V62M	1.000	NULL	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331				60	0	0	45	21	31.8182
NEUROG2	0	genome.wustl.edu	37	4	113436101	113436101	+	Silent	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	113436101	113436101	G	C	SNP	NEUROG2	ENST00000313341	human	ensembl	74_37	-1	known	silent	c.531	p.G177	0.032	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NEUROG2	HGNC	ENSG00000178403				31	0	0	26	6	18.75
ENSG00000249509	0	genome.wustl.edu	37	4	113436695	113436695	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	113436695	113436695	T	C	SNP	ENSG00000249509	ENST00000504009	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-402J6.1	Clone_based_vega_gene	ENSG00000249509				20	0	0	19	12	38.7097
C4orf21	0	genome.wustl.edu	37	4	113533738	113533738	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	113533738	113533738	T	C	SNP	C4orf21	ENST00000505019	human	ensembl	74_37	-1	known	missense	c.2609	p.K870R	0.062	NULL	pfam_DUF2439,pfam_Znf_GRF,superfamily_P-loop_NTPase	-	no_errors	C4orf21	HGNC	ENSG00000138658				46	0	0	10	10	50
HS3ST1	0	genome.wustl.edu	37	4	11401560	11401560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	11401560	11401560	C	T	SNP	HS3ST1	ENST00000002596	human	ensembl	74_37	-1	known	missense	c.70	p.E24K	0.025	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST1	HGNC	ENSG00000002587				17	0	0	10	11	52.381
NDST3	0	genome.wustl.edu	37	4	119154277	119154277	+	Silent	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	119154277	119154277	A	C	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	silent	c.1930	p.R644	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST3	HGNC	ENSG00000164100				115	0	0	30	23	43.3962
NDST3	0	genome.wustl.edu	37	4	119158200	119158200	+	Splice_Site	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	119158200	119158200	G	T	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	splice_site	c.1944-1	e9-1	1.000	-	-	-	no_errors	NDST3	HGNC	ENSG00000164100				38	0	0	19	10	34.4828
PDE5A	0	genome.wustl.edu	37	4	120422378	120422378	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	120422378	120422378	T	C	SNP	PDE5A	ENST00000354960	human	ensembl	74_37	-1	known	missense	c.2437	p.I813V	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE5A	HGNC	ENSG00000138735				55	0	0	14	14	50
BBS7	0	genome.wustl.edu	37	4	122749600	122749600	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	122749600	122749600	T	C	SNP	BBS7	ENST00000264499	human	ensembl	74_37	-1	known	missense	c.1847	p.Q616R	1.000	pirsf_Bardet-Biedl_syndrome_7_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	-	no_errors	BBS7	HGNC	ENSG00000138686				109	0	0	50	21	29.5775
BBS7	0	genome.wustl.edu	37	4	122782677	122782677	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	122782677	122782677	G	T	SNP	BBS7	ENST00000264499	human	ensembl	74_37	-1	known	missense	c.323	p.T108N	1.000	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	-	no_errors	BBS7	HGNC	ENSG00000138686				86	0	0	36	2	5.26316
TRPC3	0	genome.wustl.edu	37	4	122853631	122853631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	122853631	122853631	C	T	SNP	TRPC3	ENST00000379645	human	ensembl	74_37	-1	known	missense	c.782	p.R261Q	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741				45	0	0	46	24	34.2857
BBS12	0	genome.wustl.edu	37	4	123664251	123664251	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	123664251	123664251	C	T	SNP	BBS12	ENST00000314218	human	ensembl	74_37	+1	known	nonsense	c.1204	p.Q402*	0.001	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	BBS12	HGNC	ENSG00000181004				91	0	0	20	22	52.381
PLK4	0	genome.wustl.edu	37	4	128807646	128807646	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	128807646	128807646	G	A	SNP	PLK4	ENST00000270861	human	ensembl	74_37	+1	known	missense	c.1121	p.R374H	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK4	HGNC	ENSG00000142731				95	0	0	51	16	23.8806
PLK4	0	genome.wustl.edu	37	4	128815008	128815008	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	128815008	128815008	C	T	SNP	PLK4	ENST00000270861	human	ensembl	74_37	+1	known	missense	c.2534	p.P845L	0.018	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK4	HGNC	ENSG00000142731				95	0	0	35	14	28.5714
PCDH10	0	genome.wustl.edu	37	4	134071764	134071764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	134071764	134071764	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.469	p.R157C	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				132	0	0	61	45	42.4528
BOD1L1	0	genome.wustl.edu	37	4	13579112	13579112	+	Splice_Site	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	13579112	13579112	C	A	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	splice_site	c.8800-1	e24-1	1.000	-	-	-	no_errors	BOD1L1	HGNC	ENSG00000038219				31	0	0	14	5	26.3158
NAA15	0	genome.wustl.edu	37	4	140281667	140281667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	140281667	140281667	C	T	SNP	NAA15	ENST00000296543	human	ensembl	74_37	+1	known	missense	c.1424	p.A475V	1.000	pirsf_NatA_aux_su	pfam_NatA_aux_su,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA15	HGNC	ENSG00000164134				66	0	0	48	5	9.43396
TBC1D9	0	genome.wustl.edu	37	4	141545515	141545515	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	141545515	141545515	T	C	SNP	TBC1D9	ENST00000442267	human	ensembl	74_37	-1	known	missense	c.2927	p.Q976R	0.002	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436				30	0	0	12	8	40
TBC1D9	0	genome.wustl.edu	37	4	141590886	141590886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	141590886	141590886	G	A	SNP	TBC1D9	ENST00000442267	human	ensembl	74_37	-1	known	missense	c.1339	p.R447C	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436				47	0	0	27	14	34.1463
HHIP	0	genome.wustl.edu	37	4	145659078	145659078	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	145659078	145659078	A	G	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	missense	c.2072	p.Y691C	1.000	NULL	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161				126	0	0	51	25	32.8947
ANAPC10	0	genome.wustl.edu	37	4	145916541	145916541	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	145916541	145916541	T	A	SNP	ANAPC10	ENST00000309439	human	ensembl	74_37	-1	known	missense	c.542	p.Y181F	1.000	pfam_APC_su10/DOC_dom,pirsf_APC_su10	pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,pirsf_APC_su10	-	no_errors	ANAPC10	HGNC	ENSG00000164162				103	0	0	47	19	28.7879
DCLK2	0	genome.wustl.edu	37	4	151000285	151000285	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	151000285	151000285	A	G	SNP	DCLK2	ENST00000302176	human	ensembl	74_37	+1	known	missense	c.106	p.S36G	1.000	NULL	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK2	HGNC	ENSG00000170390				39	0	0	9	7	43.75
FBXW7	0	genome.wustl.edu	37	4	153249384	153249384	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	153249384	153249384	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	missense	c.1394	p.R465H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				229	0	0	77	55	41.6667
KIAA0922	0	genome.wustl.edu	37	4	154512227	154512227	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	154512227	154512227	C	T	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	nonsense	c.1693	p.R565*	0.023	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210				106	0	0	50	35	41.1765
KIAA0922	0	genome.wustl.edu	37	4	154553946	154553946	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	154553946	154553946	C	T	SNP	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	silent	c.4284	p.N1428	0.043	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210				77	0	0	36	24	40
PLRG1	0	genome.wustl.edu	37	4	155467035	155467035	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	155467035	155467035	G	T	SNP	PLRG1	ENST00000393905	human	ensembl	74_37	-1	known	silent	c.445	p.R149	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PLRG1	HGNC	ENSG00000171566				43	0	0	24	4	14.2857
LRAT	0	genome.wustl.edu	37	4	155665906	155665906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	155665906	155665906	G	A	SNP	LRAT	ENST00000336356	human	ensembl	74_37	+1	known	missense	c.428	p.R143Q	0.027	pfam_LRAT-like_dom	pfam_LRAT-like_dom	-	no_errors	LRAT	HGNC	ENSG00000121207				81	0	0	69	9	11.5385
GRIA2	0	genome.wustl.edu	37	4	158142933	158142933	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	158142933	158142933	C	A	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	missense	c.203	p.A68E	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				90	0	0	48	11	18.6441
GRIA2	0	genome.wustl.edu	37	4	158257028	158257028	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	158257028	158257028	G	T	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	missense	c.1472	p.G491V	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				30	0	0	18	6	25
PROM1	0	genome.wustl.edu	37	4	16020141	16020141	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	16020141	16020141	C	T	SNP	PROM1	ENST00000447510	human	ensembl	74_37	-1	known	silent	c.807	p.A269	0.700	pfam_Prominin	pfam_Prominin	-	no_errors	PROM1	HGNC	ENSG00000007062				28	0	0	14	6	30
TRIM60	0	genome.wustl.edu	37	4	165961350	165961350	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	165961350	165961350	A	G	SNP	TRIM60	ENST00000341062	human	ensembl	74_37	+1	known	silent	c.126	p.V42	0.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979				99	0	0	53	37	41.1111
TRIM60	0	genome.wustl.edu	37	4	165962586	165962586	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	165962586	165962586	T	C	SNP	TRIM60	ENST00000341062	human	ensembl	74_37	+1	known	silent	c.1362	p.T454	0.267	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979				67	0	0	30	12	28.5714
SH3RF1	0	genome.wustl.edu	37	4	170038929	170038929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	170038929	170038929	C	T	SNP	SH3RF1	ENST00000284637	human	ensembl	74_37	-1	known	missense	c.1522	p.V508M	0.867	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_p67phox,prints_SH3_domain	-	no_errors	SH3RF1	HGNC	ENSG00000154447				47	0	0	24	6	20
NEK1	0	genome.wustl.edu	37	4	170428902	170428902	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	170428902	170428902	C	A	SNP	NEK1	ENST00000507142	human	ensembl	74_37	-1	known	missense	c.1875	p.E625D	0.993	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601				47	0	0	21	5	19.2308
GALNT7	0	genome.wustl.edu	37	4	174216924	174216924	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	174216924	174216924	T	C	SNP	GALNT7	ENST00000265000	human	ensembl	74_37	+1	known	missense	c.895	p.Y299H	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT7	HGNC	ENSG00000109586				49	0	0	20	18	47.3684
HMGB2	0	genome.wustl.edu	37	4	174254316	174254316	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	174254316	174254316	T	C	SNP	HMGB2	ENST00000296503	human	ensembl	74_37	-1	known	missense	c.200	p.D67G	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGB2	HGNC	ENSG00000164104				158	0	0	56	33	37.0787
CEP44	0	genome.wustl.edu	37	4	175224861	175224861	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	175224861	175224861	G	A	SNP	CEP44	ENST00000426172	human	ensembl	74_37	+1	known	missense	c.245	p.R82H	1.000	NULL	NULL	-	no_errors	CEP44	HGNC	ENSG00000164118				48	0	0	19	18	48.6486
WDR17	0	genome.wustl.edu	37	4	177058747	177058747	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	177058747	177058747	A	G	SNP	WDR17	ENST00000280190	human	ensembl	74_37	+1	known	missense	c.1416	p.I472M	0.980	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627				71	0	0	15	8	34.7826
ASB5	0	genome.wustl.edu	37	4	177142697	177142697	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	177142697	177142697	C	A	SNP	ASB5	ENST00000296525	human	ensembl	74_37	-1	known	missense	c.439	p.G147C	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB5	HGNC	ENSG00000164122				107	0	0	78	10	11.3636
TENM3	0	genome.wustl.edu	37	4	183676001	183676001	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	183676001	183676001	G	A	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.4481	p.R1494Q	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				75	0	0	40	22	35.4839
TENM3	0	genome.wustl.edu	37	4	183713688	183713688	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	183713688	183713688	A	G	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.5863	p.R1955G	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				118	0	0	59	31	34.4444
TENM3	0	genome.wustl.edu	37	4	183714662	183714662	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	183714662	183714662	A	G	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	silent	c.6837	p.G2279	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				41	0	0	23	13	36.1111
DCTD	0	genome.wustl.edu	37	4	183836080	183836080	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	183836080	183836080	C	T	SNP	DCTD	ENST00000357067	human	ensembl	74_37	-1	known	silent	c.273	p.P91	0.070	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like,pirsf_dCMP_deaminase	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like,pirsf_dCMP_deaminase	-	no_errors	DCTD	HGNC	ENSG00000129187				82	0	0	42	19	31.1475
CLDN22	0	genome.wustl.edu	37	4	184240790	184240790	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	184240790	184240790	T	C	SNP	CLDN22	ENST00000323319	human	ensembl	74_37	-1	known	silent	c.582	p.L194	0.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN22	HGNC	ENSG00000177300				221	0	0	85	79	48.1707
CDKN2AIP	0	genome.wustl.edu	37	4	184367702	184367702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	184367702	184367702	G	A	SNP	CDKN2AIP	ENST00000504169	human	ensembl	74_37	+1	known	missense	c.865	p.E289K	0.876	NULL	pfam_DUF3469,pfscan_dsRNA-bd_dom	-	no_errors	CDKN2AIP	HGNC	ENSG00000168564				79	0	0	30	17	36.1702
KIAA1430	0	genome.wustl.edu	37	4	186097046	186097046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	186097046	186097046	G	A	SNP	KIAA1430	ENST00000296775	human	ensembl	74_37	-1	known	missense	c.1214	p.P405L	0.998	NULL	NULL	-	no_errors	KIAA1430	HGNC	ENSG00000164323				69	0	0	28	14	33.3333
MTNR1A	0	genome.wustl.edu	37	4	187455571	187455571	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	187455571	187455571	G	A	SNP	MTNR1A	ENST00000307161	human	ensembl	74_37	-1	known	silent	c.325	p.L109	0.292	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt,prints_GPCR_Rhodpsn,prints_Mel_1A_rcpt,prints_NPY_rcpt,prints_Mel_rcpt_1C	-	no_errors	MTNR1A	HGNC	ENSG00000168412				85	0	0	63	16	20.2532
FAT1	0	genome.wustl.edu	37	4	187522471	187522471	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	187522471	187522471	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.11592	p.T3864	0.001	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				48	0	0	38	10	20.8333
FAT1	0	genome.wustl.edu	37	4	187541543	187541543	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	187541543	187541543	A	G	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.6197	p.V2066A	0.354	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				237	1	0.420168	105	62	37.1257
FAT1	0	genome.wustl.edu	37	4	187628340	187628340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	187628340	187628340	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.2642	p.R881H	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				87	0	0	82	9	9.89011
FAT1	0	genome.wustl.edu	37	4	187630439	187630439	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	187630439	187630439	G	A	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.543	p.N181	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				168	0	0	83	69	45.3947
WHSC1	0	genome.wustl.edu	37	4	1953854	1953854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	1953854	1953854	G	A	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	missense	c.2033	p.S678N	0.938	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				54	0	0	35	22	38.5965
NELFA	0	genome.wustl.edu	37	4	1985736	1985736	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	1985736	1985736	G	T	SNP	NELFA	ENST00000382882	human	ensembl	74_37	-1	known	missense	c.1174	p.L392M	0.023	NULL	NULL	-	no_errors	NELFA	HGNC	ENSG00000185049				42	0	0	31	17	35.4167
ENSG00000252616	0	genome.wustl.edu	37	4	218010	218010	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	218010	218010	C	A	SNP	ENSG00000252616	ENST00000516807	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.032	-	-	-	no_errors	AC079140.1	Clone_based_ensembl_gene	ENSG00000252616				52	0	0	35	17	32.6923
TNIP2	0	genome.wustl.edu	37	4	2744179	2744179	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	2744179	2744179	G	A	SNP	TNIP2	ENST00000315423	human	ensembl	74_37	-1	known	silent	c.1095	p.D365	0.000	NULL	pfam_EABR	-	no_errors	TNIP2	HGNC	ENSG00000168884				34	0	0	39	20	33.8983
RGS12	0	genome.wustl.edu	37	4	3318583	3318583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	3318583	3318583	C	T	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	missense	c.686	p.A229V	1.000	smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				87	0	0	68	9	11.6883
HGFAC	0	genome.wustl.edu	37	4	3445813	3445813	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	3445813	3445813	T	C	SNP	HGFAC	ENST00000382774	human	ensembl	74_37	+1	known	missense	c.523	p.C175R	0.845	pirsf_Coagulation_fac_XIIa/HGFA,pfam_EG-like_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EG-like_dom,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGFAC	HGNC	ENSG00000109758				54	0	0	39	26	40
HGFAC	0	genome.wustl.edu	37	4	3449321	3449321	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	3449321	3449321	C	A	SNP	HGFAC	ENST00000382774	human	ensembl	74_37	+1	known	silent	c.1458	p.T486	0.008	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EG-like_dom,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGFAC	HGNC	ENSG00000109758				355	0	0	238	149	38.5013
DOK7	0	genome.wustl.edu	37	4	3494869	3494869	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	3494869	3494869	T	C	SNP	DOK7	ENST00000389653	human	ensembl	74_37	+1	known	missense	c.1156	p.C386R	0.954	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	DOK7	HGNC	ENSG00000175920				22	0	0	9	9	50
DOK7	0	genome.wustl.edu	37	4	3494992	3494992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	3494992	3494992	G	A	SNP	DOK7	ENST00000389653	human	ensembl	74_37	+1	known	missense	c.1279	p.G427S	0.000	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	DOK7	HGNC	ENSG00000175920				18	0	0	17	10	37.037
ARAP2	0	genome.wustl.edu	37	4	36150128	36150128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	36150128	36150128	G	A	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.2899	p.P967S	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				37	0	0	11	5	31.25
ARAP2	0	genome.wustl.edu	37	4	36179455	36179455	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	36179455	36179455	G	A	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	silent	c.1851	p.N617	0.890	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				121	0	0	30	23	43.3962
ARAP2	0	genome.wustl.edu	37	4	36230285	36230285	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	36230285	36230285	A	G	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.824	p.V275A	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				118	0	0	41	25	37.8788
ARAP2	0	genome.wustl.edu	37	4	36230390	36230390	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	36230390	36230390	G	A	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.719	p.S240L	0.004	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365				129	0	0	41	31	43.0556
RELL1	0	genome.wustl.edu	37	4	37636542	37636542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	37636542	37636542	C	T	SNP	RELL1	ENST00000314117	human	ensembl	74_37	-1	known	missense	c.647	p.R216H	1.000	NULL	pfam_TNF_rcpt_RELT	-	no_errors	RELL1	HGNC	ENSG00000181826				87	0	0	51	34	40
KLHL5	0	genome.wustl.edu	37	4	39082728	39082728	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	39082728	39082728	T	C	SNP	KLHL5	ENST00000359687	human	ensembl	74_37	+1	known	missense	c.710	p.V237A	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL5	HGNC	ENSG00000109790				94	0	0	30	11	26.8293
ENSG00000253917	0	genome.wustl.edu	37	4	3949662	3949662	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	3949662	3949662	C	T	SNP	ENSG00000253917	ENST00000281228	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.055	-	-	-	no_errors	AC226119.5	Clone_based_vega_gene	ENSG00000253917				45	0	0	47	20	29.8507
PDS5A	0	genome.wustl.edu	37	4	39871063	39871063	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	39871063	39871063	C	T	SNP	PDS5A	ENST00000303538	human	ensembl	74_37	-1	known	missense	c.2456	p.G819E	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892				170	0	0	72	41	36.2832
PDS5A	0	genome.wustl.edu	37	4	39881446	39881446	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	39881446	39881446	C	A	SNP	PDS5A	ENST00000303538	human	ensembl	74_37	-1	known	missense	c.1894	p.V632L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892				63	0	0	29	16	35.5556
PDS5A	0	genome.wustl.edu	37	4	39911885	39911885	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	39911885	39911885	C	A	SNP	PDS5A	ENST00000303538	human	ensembl	74_37	-1	known	missense	c.1066	p.D356Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892				15	0	0	4	5	55.5556
RBM47	0	genome.wustl.edu	37	4	40440329	40440329	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	40440329	40440329	G	A	SNP	RBM47	ENST00000295971	human	ensembl	74_37	-1	known	silent	c.582	p.R194	0.981	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694				101	0	0	94	7	6.93069
APBB2	0	genome.wustl.edu	37	4	41016408	41016408	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	41016408	41016408	T	C	SNP	APBB2	ENST00000295974	human	ensembl	74_37	-1	known	silent	c.27	p.S9	0.490	NULL	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB2	HGNC	ENSG00000163697				37	0	0	29	12	29.2683
LIMCH1	0	genome.wustl.edu	37	4	41683053	41683053	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	41683053	41683053	A	G	SNP	LIMCH1	ENST00000503057	human	ensembl	74_37	+1	known	missense	c.3694	p.M1232V	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMCH1	HGNC	ENSG00000064042				102	0	0	40	19	32.2034
TMEM33	0	genome.wustl.edu	37	4	41937506	41937506	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	41937506	41937506	C	T	SNP	TMEM33	ENST00000325094	human	ensembl	74_37	+1	known	missense	c.5	p.A2V	0.990	NULL	pfam_UPF0121	-	no_errors	TMEM33	HGNC	ENSG00000109133				15	0	0	10	2	16.6667
YIPF7	0	genome.wustl.edu	37	4	44624560	44624560	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	44624560	44624560	G	A	SNP	YIPF7	ENST00000332990	human	ensembl	74_37	-1	known	silent	c.714	p.I238	0.984	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF7	HGNC	ENSG00000177752				59	0	0	51	15	22.7273
GABRA2	0	genome.wustl.edu	37	4	46264068	46264068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	46264068	46264068	C	T	SNP	GABRA2	ENST00000540012	human	ensembl	74_37	-1	known	missense	c.769	p.A257T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa2_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA2	HGNC	ENSG00000151834				105	0	0	45	7	13.4615
NFXL1	0	genome.wustl.edu	37	4	47912972	47912972	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	47912972	47912972	G	T	SNP	NFXL1	ENST00000381538	human	ensembl	74_37	-1	known	missense	c.275	p.A92D	1.000	NULL	pfam_Znf_NFX1,smart_Znf_NFX1,pfscan_Znf_RING	-	no_errors	NFXL1	HGNC	ENSG00000170448				40	0	0	14	4	22.2222
SLC10A4	0	genome.wustl.edu	37	4	48490841	48490841	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	48490841	48490841	A	G	SNP	SLC10A4	ENST00000273861	human	ensembl	74_37	+1	known	missense	c.1199	p.E400G	1.000	NULL	pfam_BilAc/Na_symport	-	no_errors	SLC10A4	HGNC	ENSG00000145248				73	0	0	35	5	12.5
FRYL	0	genome.wustl.edu	37	4	48501413	48501413	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	48501413	48501413	T	C	SNP	FRYL	ENST00000512810	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FRYL	HGNC	ENSG00000075539				102	0	0	40	8	16.6667
FRYL	0	genome.wustl.edu	37	4	48572887	48572887	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	48572887	48572887	G	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	nonsense	c.2953	p.R985*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				96	0	0	36	19	34.5455
MSX1	0	genome.wustl.edu	37	4	4864432	4864432	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	4864432	4864432	G	A	SNP	MSX1	ENST00000382723	human	ensembl	74_37	+1	known	silent	c.474	p.R158	0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MSX1	HGNC	ENSG00000163132				175	1	0.568182	100	62	38.2716
PIGG	0	genome.wustl.edu	37	4	502669	502669	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	502669	502669	A	G	SNP	PIGG	ENST00000453061	human	ensembl	74_37	+1	known	missense	c.811	p.M271V	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227				82	0	0	25	20	44.4444
LRRC66	0	genome.wustl.edu	37	4	52861933	52861933	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	52861933	52861933	C	T	SNP	LRRC66	ENST00000343457	human	ensembl	74_37	-1	known	missense	c.1255	p.A419T	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993				147	0	0	56	39	41.0526
RASL11B	0	genome.wustl.edu	37	4	53731563	53731563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	53731563	53731563	C	T	SNP	RASL11B	ENST00000248706	human	ensembl	74_37	+1	known	missense	c.338	p.A113V	0.992	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASL11B	HGNC	ENSG00000128045				99	0	0	68	5	6.84932
FIP1L1	0	genome.wustl.edu	37	4	54257305	54257305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	54257305	54257305	C	T	SNP	FIP1L1	ENST00000337488	human	ensembl	74_37	+1	known	missense	c.635	p.T212M	1.000	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216				159	1	0.625	63	47	42.7273
PDGFRA	0	genome.wustl.edu	37	4	55139788	55139788	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	55139788	55139788	C	T	SNP	PDGFRA	ENST00000257290	human	ensembl	74_37	+1	known	silent	c.1449	p.T483	0.599	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRA	HGNC	ENSG00000134853				122	0	0	55	26	32.0988
CEP135	0	genome.wustl.edu	37	4	56840987	56840987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	56840987	56840987	G	A	SNP	CEP135	ENST00000257287	human	ensembl	74_37	+1	known	missense	c.1325	p.R442H	1.000	superfamily_EB1_C	superfamily_Prefoldin,superfamily_EB1_C	-	no_errors	CEP135	HGNC	ENSG00000174799				92	0	0	50	29	36.7089
SRP72	0	genome.wustl.edu	37	4	57355575	57355575	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	57355575	57355575	T	C	SNP	SRP72	ENST00000342756	human	ensembl	74_37	+1	known	missense	c.1246	p.Y416H	1.000	smart_TPR_repeat	pfam_Signal_recog_part_SRP72_RNA-bd,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SRP72	HGNC	ENSG00000174780				67	0	0	19	12	38.7097
POLR2B	0	genome.wustl.edu	37	4	57865857	57865857	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	57865857	57865857	T	C	SNP	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	silent	c.810	p.I270	0.988	pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				83	0	0	30	24	44.4444
IGFBP7	0	genome.wustl.edu	37	4	57898658	57898658	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	57898658	57898658	C	A	SNP	IGFBP7	ENST00000295666	human	ensembl	74_37	-1	known	nonsense	c.763	p.G255*	1.000	pfam_Ig_I-set,smart_Ig_sub,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Kazal_dom,pfam_IGFBP-like,smart_IGFBP-like,smart_Kazal_dom,smart_Ig_sub,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	-	no_errors	IGFBP7	HGNC	ENSG00000163453				62	0	0	24	14	36.8421
CRMP1	0	genome.wustl.edu	37	4	5868421	5868421	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	5868421	5868421	G	A	SNP	CRMP1	ENST00000324989	human	ensembl	74_37	-1	known	silent	c.444	p.D148	0.996	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832				102	0	0	37	32	46.3768
PDE6B	0	genome.wustl.edu	37	4	647749	647749	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	647749	647749	T	C	SNP	PDE6B	ENST00000496514	human	ensembl	74_37	+1	known	missense	c.820	p.S274P	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256				93	0	0	70	27	27.8351
MAN2B2	0	genome.wustl.edu	37	4	6612880	6612880	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	6612880	6612880	A	G	SNP	MAN2B2	ENST00000285599	human	ensembl	74_37	+1	known	missense	c.2438	p.D813G	1.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288				65	0	0	53	25	32.0513
SYT14L	0	genome.wustl.edu	37	4	68928294	68928294	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	68928294	68928294	A	G	SNP	SYT14L	ENST00000600441	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-35D5.1	Clone_based_vega_gene	ENSG00000215127				143	0	0	64	34	34.6939
UGT2B7	0	genome.wustl.edu	37	4	69973866	69973866	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	69973866	69973866	G	A	SNP	UGT2B7	ENST00000305231	human	ensembl	74_37	+1	known	missense	c.1136	p.G379D	1.000	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B7	HGNC	ENSG00000171234				184	0	0	73	56	43.4109
C4orf40	0	genome.wustl.edu	37	4	71024255	71024255	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	71024255	71024255	G	T	SNP	C4orf40	ENST00000344526	human	ensembl	74_37	+1	known	missense	c.286	p.A96S	0.001	NULL	NULL	-	no_errors	C4orf40	HGNC	ENSG00000187533				254	0	0	144	50	25.7732
AMTN	0	genome.wustl.edu	37	4	71394459	71394459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	71394459	71394459	C	T	SNP	AMTN	ENST00000339336	human	ensembl	74_37	+1	known	missense	c.314	p.T105I	1.000	NULL	NULL	-	no_errors	AMTN	HGNC	ENSG00000187689				38	0	0	9	10	52.6316
GC	0	genome.wustl.edu	37	4	72634025	72634025	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	72634025	72634025	T	C	SNP	GC	ENST00000273951	human	ensembl	74_37	-1	known	missense	c.254	p.D85G	0.997	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_VitD-bd	pfam_Serum_albumin_N,pfam_VitD-bind_III,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_VitD-bd,prints_ALB/AFP/VDB	-	no_errors	GC	HGNC	ENSG00000145321				34	0	0	24	7	22.5806
CCDC158	0	genome.wustl.edu	37	4	77317477	77317477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	77317477	77317477	C	T	SNP	CCDC158	ENST00000388914	human	ensembl	74_37	-1	known	missense	c.233	p.R78H	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749				70	0	0	21	26	55.3191
SHROOM3	0	genome.wustl.edu	37	4	77661562	77661562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	77661562	77661562	C	T	SNP	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	missense	c.2236	p.P746S	0.001	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771				58	0	0	32	19	37.2549
BMP2K	0	genome.wustl.edu	37	4	79832337	79832337	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	79832337	79832337	A	G	SNP	BMP2K	ENST00000335016	human	ensembl	74_37	+1	known	missense	c.2636	p.N879S	0.116	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMP2K	HGNC	ENSG00000138756				47	0	0	30	15	33.3333
HELQ	0	genome.wustl.edu	37	4	84367172	84367172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	84367172	84367172	G	A	SNP	HELQ	ENST00000295488	human	ensembl	74_37	-1	known	missense	c.1460	p.T487I	0.932	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELQ	HGNC	ENSG00000163312				104	0	0	53	4	7.01754
WDFY3	0	genome.wustl.edu	37	4	85719240	85719240	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	85719240	85719240	A	G	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	silent	c.2844	p.S948	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				90	0	0	36	23	38.9831
WDFY3	0	genome.wustl.edu	37	4	85731038	85731038	+	Splice_Site	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	85731038	85731038	A	G	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	splice_site	c.2345+2	e11+2	1.000	-	-	-	no_errors	WDFY3	HGNC	ENSG00000163625				69	0	0	31	20	39.2157
PTPN13	0	genome.wustl.edu	37	4	87637691	87637691	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	87637691	87637691	C	T	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	nonsense	c.1204	p.R402*	0.922	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				18	0	0	2	5	71.4286
PTPN13	0	genome.wustl.edu	37	4	87684338	87684338	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	87684338	87684338	A	G	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	missense	c.4012	p.K1338E	0.981	pirsf_Tyr_Pase_non-rcpt_typ-13,superfamily_PDZ	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				157	0	0	66	28	29.7872
KLHL8	0	genome.wustl.edu	37	4	88091339	88091339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	88091339	88091339	C	T	SNP	KLHL8	ENST00000273963	human	ensembl	74_37	-1	known	missense	c.1429	p.V477M	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL8	HGNC	ENSG00000145332				97	0	0	63	6	8.69565
HMX1	0	genome.wustl.edu	37	4	8869697	8869697	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	8869697	8869697	T	C	SNP	HMX1	ENST00000400677	human	ensembl	74_37	-1	known	missense	c.769	p.K257E	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HMX1	HGNC	ENSG00000215612				10	0	0	12	5	29.4118
MEPE	0	genome.wustl.edu	37	4	88767622	88767622	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	88767622	88767622	T	C	SNP	MEPE	ENST00000508016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MEPE	HGNC	ENSG00000152595				132	0	0	83	65	43.9189
PIGY	0	genome.wustl.edu	37	4	89442829	89442829	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	89442829	89442829	C	T	SNP	PIGY	ENST00000527353	human	ensembl	74_37	-1	known	missense	c.112	p.A38T	0.000	NULL	NULL	-	no_errors	PIGY	HGNC	ENSG00000255072				55	0	0	37	11	22.9167
MMRN1	0	genome.wustl.edu	37	4	90856582	90856582	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	90856582	90856582	A	G	SNP	MMRN1	ENST00000264790	human	ensembl	74_37	+1	known	missense	c.1751	p.E584G	1.000	NULL	pfam_C1q,pfam_EMI_domain,pfam_EG-like_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MMRN1	HGNC	ENSG00000138722				84	0	0	36	15	29.4118
CCSER1	0	genome.wustl.edu	37	4	91229794	91229794	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	91229794	91229794	G	A	SNP	CCSER1	ENST00000333691	human	ensembl	74_37	+1	known	missense	c.359	p.S120N	0.998	NULL	NULL	-	no_errors	CCSER1	HGNC	ENSG00000184305				57	0	0	32	20	38.4615
DGKQ	0	genome.wustl.edu	37	4	954956	954956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	954956	954956	G	A	SNP	DGKQ	ENST00000273814	human	ensembl	74_37	-1	known	missense	c.2608	p.R870W	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ras-assoc,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ras-assoc,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKQ	HGNC	ENSG00000145214				44	0	0	24	24	50
PAM	0	genome.wustl.edu	37	5	102249696	102249696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	102249696	102249696	C	T	SNP	PAM	ENST00000345721	human	ensembl	74_37	+1	known	missense	c.269	p.A90V	0.998	NULL	NULL	-	no_errors	PAM	HGNC	ENSG00000145730				91	0	0	28	17	37.7778
SLC12A7	0	genome.wustl.edu	37	5	1053568	1053568	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	1053568	1053568	G	A	SNP	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	missense	c.3056	p.T1019M	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504				49	0	0	35	26	42.623
SLC12A7	0	genome.wustl.edu	37	5	1081759	1081759	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	1081759	1081759	G	T	SNP	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	silent	c.1230	p.P410	0.999	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504				98	0	0	70	8	10.2564
EPB41L4A	0	genome.wustl.edu	37	5	111600713	111600713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	111600713	111600713	G	A	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	missense	c.434	p.S145L	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				136	0	0	64	6	8.57143
APC	0	genome.wustl.edu	37	5	112163629	112163629	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	112163629	112163629	A	G	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.1552	p.T518A	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				37	0	0	17	9	34.6154
ZRSR1	0	genome.wustl.edu	37	5	112227678	112227678	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	112227678	112227678	A	G	SNP	ZRSR1	ENST00000391338	human	ensembl	74_37	+1	known	silent	c.342	p.E114	0.001	NULL	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,pfscan_RRM_dom,prints_U2_small	-	no_errors	ZRSR1	HGNC	ENSG00000212643				26	0	0	19	3	13.6364
MCC	0	genome.wustl.edu	37	5	112399736	112399736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	112399736	112399736	C	T	SNP	MCC	ENST00000302475	human	ensembl	74_37	-1	known	missense	c.1588	p.V530M	0.999	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444				109	0	0	53	40	43.0108
AQPEP	0	genome.wustl.edu	37	5	115319108	115319108	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	115319108	115319108	T	C	SNP	AQPEP	ENST00000357872	human	ensembl	74_37	+1	known	missense	c.820	p.S274P	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	AQPEP	Uniprot_gn	ENSG00000172901				85	0	0	24	17	41.4634
SEMA6A	0	genome.wustl.edu	37	5	115818188	115818188	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	115818188	115818188	G	T	SNP	SEMA6A	ENST00000257414	human	ensembl	74_37	-1	known	missense	c.1046	p.P349H	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6A	HGNC	ENSG00000092421				47	0	0	25	11	30.5556
DMXL1	0	genome.wustl.edu	37	5	118485620	118485620	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	118485620	118485620	T	A	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	missense	c.4098	p.N1366K	0.994	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				71	0	0	38	17	30.9091
CEP120	0	genome.wustl.edu	37	5	122714072	122714072	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	122714072	122714072	G	T	SNP	CEP120	ENST00000306467	human	ensembl	74_37	-1	known	missense	c.2154	p.D718E	0.996	NULL	pfam_DUF3668,superfamily_C2_dom	-	no_errors	CEP120	HGNC	ENSG00000168944				118	0	0	49	28	36.3636
CSNK1G3	0	genome.wustl.edu	37	5	122926163	122926163	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	122926163	122926163	T	C	SNP	CSNK1G3	ENST00000360683	human	ensembl	74_37	+1	known	missense	c.901	p.Y301H	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Casein_kinase-1_gamma_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1G3	HGNC	ENSG00000151292				85	0	0	28	17	37.7778
SLC6A18	0	genome.wustl.edu	37	5	1235726	1235726	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	1235726	1235726	C	A	SNP	SLC6A18	ENST00000324642	human	ensembl	74_37	+1	known	silent	c.570	p.S190	0.993	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A18	HGNC	ENSG00000164363				172	0	0	149	8	5.09554
FBN2	0	genome.wustl.edu	37	5	127641256	127641256	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	127641256	127641256	T	C	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.5621	p.Y1874C	1.000	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				77	0	0	33	23	41.0714
CDC42SE2	0	genome.wustl.edu	37	5	130726771	130726771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	130726771	130726771	C	T	SNP	CDC42SE2	ENST00000360515	human	ensembl	74_37	+1	known	missense	c.242	p.T81M	0.990	NULL	pfam_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42SE2	HGNC	ENSG00000158985				80	0	0	54	22	28.9474
RAPGEF6	0	genome.wustl.edu	37	5	130782200	130782200	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	130782200	130782200	G	A	SNP	RAPGEF6	ENST00000509018	human	ensembl	74_37	-1	known	nonsense	c.3397	p.Q1133*	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987				142	1	0.699301	51	29	36.25
SLC22A5	0	genome.wustl.edu	37	5	131728210	131728210	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	131728210	131728210	C	T	SNP	SLC22A5	ENST00000435065	human	ensembl	74_37	+1	known	silent	c.1425	p.A475	0.069	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A5	HGNC	ENSG00000197375				122	0	0	50	41	45.0549
RAD50	0	genome.wustl.edu	37	5	131931338	131931338	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	131931338	131931338	C	T	SNP	RAD50	ENST00000265335	human	ensembl	74_37	+1	known	silent	c.2043	p.C681	1.000	pfam_Rad50_Zn_hook,superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	pfam_Rad50_Zn_hook,superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	-	no_errors	RAD50	HGNC	ENSG00000113522				94	0	0	35	29	45.3125
RAD50	0	genome.wustl.edu	37	5	131939124	131939124	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	131939124	131939124	T	C	SNP	RAD50	ENST00000265335	human	ensembl	74_37	+1	known	silent	c.2340	p.P780	1.000	superfamily_P-loop_NTPase,tigrfam_Rad50_eukaryotes	pfam_Rad50_Zn_hook,superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	-	no_errors	RAD50	HGNC	ENSG00000113522				86	0	0	26	20	43.4783
CCNI2	0	genome.wustl.edu	37	5	132088655	132088655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	132088655	132088655	C	T	SNP	CCNI2	ENST00000378731	human	ensembl	74_37	+1	novel	missense	c.1103	p.A368V	0.011	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNI2	HGNC	ENSG00000205089				66	0	0	19	10	34.4828
GDF9	0	genome.wustl.edu	37	5	132197346	132197346	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	132197346	132197346	G	A	SNP	GDF9	ENST00000296875	human	ensembl	74_37	-1	known	missense	c.1300	p.P434S	0.914	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF9	HGNC	ENSG00000164404				115	0	0	87	7	7.44681
PKD2L2	0	genome.wustl.edu	37	5	137230252	137230252	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	137230252	137230252	T	C	SNP	PKD2L2	ENST00000508883	human	ensembl	74_37	+1	known	missense	c.478	p.S160P	0.000	pfam_PKD1_2_channel	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	-	no_errors	PKD2L2	HGNC	ENSG00000078795				74	0	0	25	12	32.4324
NME5	0	genome.wustl.edu	37	5	137464980	137464980	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	137464980	137464980	A	G	SNP	NME5	ENST00000265191	human	ensembl	74_37	-1	known	silent	c.307	p.L103	0.461	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,pirsf_NDK_H5	pfam_Nucleoside_diP_kinase,pfam_Dpy-30_motif,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,pirsf_NDK_H5,prints_Nucleoside_diP_kinase	-	no_errors	NME5	HGNC	ENSG00000112981				104	0	0	43	24	35.8209
DNAH5	0	genome.wustl.edu	37	5	13753574	13753574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	13753574	13753574	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.10640	p.R3547Q	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				172	0	0	64	46	41.8182
HSPA9	0	genome.wustl.edu	37	5	137903347	137903347	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	137903347	137903347	C	T	SNP	HSPA9	ENST00000297185	human	ensembl	74_37	-1	known	silent	c.600	p.S200	0.391	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam,tigrfam_Chaperone_DnaK	pfam_Hsp_70_fam,pfam_MreB_Mrl,pfam_Carb_kinase_FGGY_C,prints_Hsp_70_fam,tigrfam_Chaperone_DnaK	-	no_errors	HSPA9	HGNC	ENSG00000113013				54	0	0	22	12	35.2941
SLC23A1	0	genome.wustl.edu	37	5	138715727	138715727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	138715727	138715727	C	T	SNP	SLC23A1	ENST00000353963	human	ensembl	74_37	-1	known	missense	c.698	p.R233H	0.998	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A1	HGNC	ENSG00000170482				33	0	0	26	10	27.7778
SLC4A9	0	genome.wustl.edu	37	5	139745425	139745425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	139745425	139745425	G	A	SNP	SLC4A9	ENST00000230993	human	ensembl	74_37	+1	known	missense	c.1789	p.G597S	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073				167	0	0	85	53	38.4058
SLC4A9	0	genome.wustl.edu	37	5	139750733	139750733	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	139750733	139750733	G	A	SNP	SLC4A9	ENST00000230993	human	ensembl	74_37	+1	known	silent	c.2553	p.A851	0.016	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073				14	0	0	6	11	64.7059
APBB3	0	genome.wustl.edu	37	5	139941704	139941704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	139941704	139941704	C	T	SNP	APBB3	ENST00000356738	human	ensembl	74_37	-1	known	missense	c.607	p.V203M	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB3	HGNC	ENSG00000113108				77	0	0	59	27	31.3953
HARS2	0	genome.wustl.edu	37	5	140073551	140073551	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140073551	140073551	T	C	SNP	HARS2	ENST00000230771	human	ensembl	74_37	+1	known	missense	c.215	p.V72A	1.000	pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,tigrfam_His-tRNA-ligase	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,superfamily_Anticodon-bd,pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,tigrfam_His-tRNA-ligase	-	no_errors	HARS2	HGNC	ENSG00000112855				244	1	0.408163	104	68	39.5349
PCDHA1	0	genome.wustl.edu	37	5	140166895	140166895	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140166895	140166895	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	silent	c.1020	p.V340	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				113	0	0	89	10	10.101
PCDHA3	0	genome.wustl.edu	37	5	140182288	140182288	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140182288	140182288	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	silent	c.1506	p.R502	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				143	0	0	150	16	9.63855
PCDHA7	0	genome.wustl.edu	37	5	140215836	140215836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140215836	140215836	G	A	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.1868	p.R623H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				157	0	0	141	52	26.943
PCDHAC2	0	genome.wustl.edu	37	5	140347507	140347507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140347507	140347507	G	A	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	missense	c.1156	p.V386I	0.186	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				99	0	0	58	32	35.5556
PCDHAC2	0	genome.wustl.edu	37	5	140347896	140347896	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140347896	140347896	G	A	SNP	PCDHAC2	ENST00000289269	human	ensembl	74_37	+1	known	silent	c.1545	p.G515	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232				150	0	0	47	41	46.5909
PCDHB2	0	genome.wustl.edu	37	5	140475902	140475902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140475902	140475902	G	A	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	missense	c.1528	p.A510T	0.799	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				274	0	0	190	123	39.2971
PCDHB3	0	genome.wustl.edu	37	5	140481019	140481019	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140481019	140481019	C	T	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	silent	c.786	p.V262	0.001	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				138	0	0	36	42	53.8462
PCDHB3	0	genome.wustl.edu	37	5	140482199	140482199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140482199	140482199	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1966	p.A656T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				172	0	0	102	41	28.6713
PCDHB5	0	genome.wustl.edu	37	5	140515726	140515726	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140515726	140515726	A	G	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.710	p.D237G	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				325	1	0.306748	190	115	37.7049
PCDHB16	0	genome.wustl.edu	37	5	140563826	140563826	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140563826	140563826	G	A	SNP	PCDHB16	ENST00000361016	human	ensembl	74_37	+1	known	silent	c.1692	p.P564	0.014	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB16	HGNC	ENSG00000196963				102	0	0	115	24	17.2662
PCDHB10	0	genome.wustl.edu	37	5	140573722	140573722	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140573722	140573722	G	T	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	+1	known	missense	c.1597	p.A533S	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324				253	0	0	258	44	14.5695
PCDHB10	0	genome.wustl.edu	37	5	140574355	140574355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140574355	140574355	G	A	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	+1	known	missense	c.2230	p.A744T	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324				213	0	0	136	43	24.0223
PCDHB14	0	genome.wustl.edu	37	5	140604455	140604455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140604455	140604455	G	A	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.1378	p.V460I	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				335	0	0	191	132	40.8669
PCDHB18	0	genome.wustl.edu	37	5	140616304	140616304	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140616304	140616304	G	T	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				247	0	0	108	80	42.5532
PCDHGA1	0	genome.wustl.edu	37	5	140712134	140712134	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140712134	140712134	C	T	SNP	PCDHGA1	ENST00000517417	human	ensembl	74_37	+1	known	missense	c.1883	p.T628M	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956				103	1	0.961538	57	32	35.9551
PCDHGA2	0	genome.wustl.edu	37	5	140720244	140720244	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140720244	140720244	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	missense	c.1706	p.T569I	0.985	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				294	0	0	157	103	39.6154
PCDHGA3	0	genome.wustl.edu	37	5	140724590	140724590	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140724590	140724590	A	G	SNP	PCDHGA3	ENST00000253812	human	ensembl	74_37	+1	known	silent	c.990	p.R330	0.021	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245				106	1	0.934579	52	26	33.3333
PCDHGB1	0	genome.wustl.edu	37	5	140731931	140731931	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140731931	140731931	G	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	missense	c.2104	p.A702T	0.003	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221				241	1	0.413223	191	66	25.6809
PCDHGA5	0	genome.wustl.edu	37	5	140744704	140744704	+	Silent	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140744704	140744704	A	C	SNP	PCDHGA5	ENST00000518069	human	ensembl	74_37	+1	known	silent	c.807	p.P269	0.645	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA5	HGNC	ENSG00000253485				95	0	0	61	40	39.604
PCDHGA8	0	genome.wustl.edu	37	5	140773186	140773186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140773186	140773186	C	T	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	missense	c.806	p.P269L	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767				137	0	0	103	37	26.4286
PCDHGA11	0	genome.wustl.edu	37	5	140801741	140801741	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140801741	140801741	A	G	SNP	PCDHGA11	ENST00000398587	human	ensembl	74_37	+1	known	missense	c.947	p.Y316C	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873				135	0	0	56	42	42.8571
PCDHGC3	0	genome.wustl.edu	37	5	140856553	140856553	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140856553	140856553	C	T	SNP	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	silent	c.870	p.G290	0.083	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				130	0	0	75	49	39.5161
DIAPH1	0	genome.wustl.edu	37	5	140960325	140960325	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140960325	140960325	C	T	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	silent	c.810	p.P270	0.963	superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				105	0	0	51	34	40
FCHSD1	0	genome.wustl.edu	37	5	141028814	141028814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	141028814	141028814	C	T	SNP	FCHSD1	ENST00000435817	human	ensembl	74_37	-1	known	missense	c.437	p.R146Q	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_FCH_dom,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	FCHSD1	HGNC	ENSG00000197948				190	0	0	117	64	35.3591
ARAP3	0	genome.wustl.edu	37	5	141051820	141051820	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	141051820	141051820	C	T	SNP	ARAP3	ENST00000239440	human	ensembl	74_37	-1	known	silent	c.1434	p.L478	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318				200	0	0	141	14	9.03226
TRIO	0	genome.wustl.edu	37	5	14291024	14291024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	14291024	14291024	C	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.740	p.P247L	1.000	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				76	0	0	31	18	36.7347
LPCAT1	0	genome.wustl.edu	37	5	1467001	1467001	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	1467001	1467001	T	C	SNP	LPCAT1	ENST00000283415	human	ensembl	74_37	-1	known	missense	c.1283	p.Y428C	0.961	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	LPCAT1	HGNC	ENSG00000153395				103	0	0	57	23	28.75
LPCAT1	0	genome.wustl.edu	37	5	1477549	1477549	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	1477549	1477549	T	C	SNP	LPCAT1	ENST00000283415	human	ensembl	74_37	-1	known	missense	c.869	p.Y290C	0.993	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	LPCAT1	HGNC	ENSG00000153395				97	0	0	54	30	35.7143
FBXO38	0	genome.wustl.edu	37	5	147807425	147807425	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	147807425	147807425	C	T	SNP	FBXO38	ENST00000340253	human	ensembl	74_37	+1	known	silent	c.2568	p.D856	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO38	HGNC	ENSG00000145868				52	0	0	48	11	18.6441
FBXO38	0	genome.wustl.edu	37	5	147820078	147820078	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	147820078	147820078	T	C	SNP	FBXO38	ENST00000340253	human	ensembl	74_37	+1	known	missense	c.3262	p.Y1088H	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO38	HGNC	ENSG00000145868				51	0	0	15	18	54.5455
PPARGC1B	0	genome.wustl.edu	37	5	149225444	149225444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	149225444	149225444	C	T	SNP	PPARGC1B	ENST00000309241	human	ensembl	74_37	+1	known	missense	c.2938	p.R980W	0.789	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846				67	0	0	49	33	40.2439
TCOF1	0	genome.wustl.edu	37	5	149755683	149755683	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	149755683	149755683	C	T	SNP	TCOF1	ENST00000451292	human	ensembl	74_37	+1	known	silent	c.1932	p.C644	0.924	pfam_TCS_treacle,prints_Treacle-like_TCS	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814				232	0	0	214	12	5.30973
LPCAT1	0	genome.wustl.edu	37	5	1501684	1501684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	1501684	1501684	C	T	SNP	LPCAT1	ENST00000283415	human	ensembl	74_37	-1	known	missense	c.170	p.R57Q	1.000	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	LPCAT1	HGNC	ENSG00000153395				60	0	0	53	17	24.2857
G3BP1	0	genome.wustl.edu	37	5	151179536	151179536	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	151179536	151179536	T	C	SNP	G3BP1	ENST00000356245	human	ensembl	74_37	+1	known	silent	c.930	p.I310	0.994	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP1	HGNC	ENSG00000145907				41	0	0	19	17	47.2222
HAVCR2	0	genome.wustl.edu	37	5	156535954	156535954	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	156535954	156535954	A	G	SNP	HAVCR2	ENST00000307851	human	ensembl	74_37	-1	known	missense	c.41	p.L14P	0.993	pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	HAVCR2	HGNC	ENSG00000135077				72	0	0	41	15	26.7857
MED7	0	genome.wustl.edu	37	5	156566347	156566347	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	156566347	156566347	G	T	SNP	MED7	ENST00000286317	human	ensembl	74_37	-1	known	silent	c.96	p.P32	0.991	pfam_Mediatior_Med7	pfam_Mediatior_Med7	-	no_errors	MED7	HGNC	ENSG00000155868				83	0	0	38	22	36.6667
CYFIP2	0	genome.wustl.edu	37	5	156816338	156816338	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	156816338	156816338	G	A	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	missense	c.3424	p.V1142I	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163				46	0	0	30	23	43.3962
EBF1	0	genome.wustl.edu	37	5	158139180	158139180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	158139180	158139180	C	T	SNP	EBF1	ENST00000313708	human	ensembl	74_37	-1	known	missense	c.1531	p.A511T	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,superfamily_bHLH_dom,smart_IPT	-	no_errors	EBF1	HGNC	ENSG00000164330				31	0	0	17	6	26.087
FABP6	0	genome.wustl.edu	37	5	159659202	159659202	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	159659202	159659202	C	T	SNP	FABP6	ENST00000393980	human	ensembl	74_37	+1	known	silent	c.312	p.S104	0.121	superfamily_Calycin-like	superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	FABP6	HGNC	ENSG00000170231				29	0	0	26	11	29.7297
GABRA1	0	genome.wustl.edu	37	5	161317985	161317985	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	161317985	161317985	T	C	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	missense	c.785	p.I262T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				96	0	0	60	7	10.4478
GABRA1	0	genome.wustl.edu	37	5	161322768	161322768	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	161322768	161322768	C	T	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	missense	c.953	p.A318V	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				116	0	0	34	21	38.1818
MYO10	0	genome.wustl.edu	37	5	16711062	16711062	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	16711062	16711062	C	A	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.2124	p.Q708H	0.979	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				38	0	0	31	2	6.06061
WWC1	0	genome.wustl.edu	37	5	167812369	167812369	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	167812369	167812369	A	G	SNP	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	missense	c.383	p.Y128C	1.000	NULL	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645				73	0	0	60	31	34.0659
STK10	0	genome.wustl.edu	37	5	171523526	171523526	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	171523526	171523526	C	T	SNP	STK10	ENST00000176763	human	ensembl	74_37	-1	known	silent	c.909	p.L303	0.888	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK10	HGNC	ENSG00000072786				174	0	0	97	64	39.7516
UBTD2	0	genome.wustl.edu	37	5	171661162	171661162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	171661162	171661162	C	T	SNP	UBTD2	ENST00000393792	human	ensembl	74_37	-1	known	missense	c.271	p.A91T	1.000	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfscan_Ubiquitin_supergroup	-	no_errors	UBTD2	HGNC	ENSG00000168246				113	0	0	45	19	29.6875
DUSP1	0	genome.wustl.edu	37	5	172196764	172196764	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	172196764	172196764	G	A	SNP	DUSP1	ENST00000239223	human	ensembl	74_37	-1	known	silent	c.547	p.L183	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP1	HGNC	ENSG00000120129				63	0	0	53	5	8.62069
NKX2-5	0	genome.wustl.edu	37	5	172661785	172661785	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	172661785	172661785	T	C	SNP	NKX2-5	ENST00000329198	human	ensembl	74_37	-1	known	missense	c.302	p.D101G	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-5	HGNC	ENSG00000183072				39	0	0	19	13	40.625
CPEB4	0	genome.wustl.edu	37	5	173378896	173378896	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	173378896	173378896	C	T	SNP	CPEB4	ENST00000265085	human	ensembl	74_37	+1	known	nonsense	c.1735	p.R579*	0.995	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742				70	0	0	28	8	22.2222
RNF44	0	genome.wustl.edu	37	5	175959073	175959073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	175959073	175959073	C	T	SNP	RNF44	ENST00000274811	human	ensembl	74_37	-1	known	missense	c.229	p.G77S	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF44	HGNC	ENSG00000146083				24	0	0	33	11	25
FGFR4	0	genome.wustl.edu	37	5	176520461	176520461	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	176520461	176520461	G	A	SNP	FGFR4	ENST00000292408	human	ensembl	74_37	+1	known	missense	c.1306	p.V436M	0.993	pirsf_FGF_rcpt_fam	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR4	HGNC	ENSG00000160867				170	0	0	84	56	40
GRK6	0	genome.wustl.edu	37	5	176857878	176857878	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	176857878	176857878	G	A	SNP	GRK6	ENST00000528793	human	ensembl	74_37	+1	known	missense	c.58	p.G20S	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK6	HGNC	ENSG00000198055				40	0	0	53	4	7.01754
PDLIM7	0	genome.wustl.edu	37	5	176915118	176915118	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	176915118	176915118	T	C	SNP	PDLIM7	ENST00000355841	human	ensembl	74_37	-1	known	missense	c.1001	p.D334G	0.997	pfscan_Znf_LIM	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM7	HGNC	ENSG00000196923				114	0	0	69	46	40
PDLIM7	0	genome.wustl.edu	37	5	176918070	176918070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	176918070	176918070	G	A	SNP	PDLIM7	ENST00000355841	human	ensembl	74_37	-1	known	missense	c.476	p.P159L	0.999	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM7	HGNC	ENSG00000196923				28	0	0	17	7	29.1667
B4GALT7	0	genome.wustl.edu	37	5	177034445	177034445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	177034445	177034445	G	A	SNP	B4GALT7	ENST00000029410	human	ensembl	74_37	+1	known	missense	c.556	p.A186T	1.000	pfam_Galactosyl_T_C	pfam_Galactosyl_T_C,prints_Galactosyl_T	-	no_errors	B4GALT7	HGNC	ENSG00000027847				104	0	0	44	39	46.988
FAM153A	0	genome.wustl.edu	37	5	177175650	177175650	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	177175650	177175650	C	T	SNP	FAM153A	ENST00000515787	human	ensembl	74_37	-1	known	missense	c.82	p.V28I	0.000	NULL	NULL	-	no_errors	FAM153A	HGNC	ENSG00000170074				76	0	0	36	6	14.2857
CLK4	0	genome.wustl.edu	37	5	178045622	178045622	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	178045622	178045622	G	A	SNP	CLK4	ENST00000316308	human	ensembl	74_37	-1	known	missense	c.319	p.R107C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK4	HGNC	ENSG00000113240				166	0	0	86	43	33.3333
GRM6	0	genome.wustl.edu	37	5	178416065	178416065	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	178416065	178416065	A	G	SNP	GRM6	ENST00000231188	human	ensembl	74_37	-1	known	missense	c.1225	p.Y409H	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM6	HGNC	ENSG00000113262				43	0	0	31	4	11.4286
ADAMTS2	0	genome.wustl.edu	37	5	178585754	178585754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	178585754	178585754	G	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	missense	c.1102	p.R368W	0.139	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				140	0	0	92	31	25.2033
MGAT4B	0	genome.wustl.edu	37	5	179226267	179226267	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	179226267	179226267	T	C	SNP	MGAT4B	ENST00000337755	human	ensembl	74_37	-1	known	missense	c.1130	p.K377R	1.000	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	MGAT4B	HGNC	ENSG00000161013				51	0	0	36	21	36.8421
RASGEF1C	0	genome.wustl.edu	37	5	179555581	179555581	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	179555581	179555581	T	C	SNP	RASGEF1C	ENST00000361132	human	ensembl	74_37	-1	known	silent	c.468	p.L156	0.998	superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090				52	0	0	51	5	8.92857
RASGEF1C	0	genome.wustl.edu	37	5	179555592	179555592	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	179555592	179555592	G	A	SNP	RASGEF1C	ENST00000361132	human	ensembl	74_37	-1	known	missense	c.457	p.H153Y	0.998	superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090				45	0	0	32	22	40.7407
GFPT2	0	genome.wustl.edu	37	5	179731781	179731781	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	179731781	179731781	C	T	SNP	GFPT2	ENST00000253778	human	ensembl	74_37	-1	known	silent	c.1833	p.T611	0.001	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459				225	0	0	217	20	8.43882
FLT4	0	genome.wustl.edu	37	5	180048800	180048800	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	180048800	180048800	G	T	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.1762	p.L588M	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				117	0	0	55	55	50
CDH12	0	genome.wustl.edu	37	5	21802400	21802400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	21802400	21802400	C	T	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.1132	p.V378I	0.993	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				50	0	0	42	15	26.3158
PRDM9	0	genome.wustl.edu	37	5	23522902	23522902	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	23522902	23522902	G	C	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.790	p.A264P	0.322	NULL	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				84	0	0	56	28	33.3333
DROSHA	0	genome.wustl.edu	37	5	31511219	31511219	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	31511219	31511219	A	G	SNP	DROSHA	ENST00000344624	human	ensembl	74_37	-1	known	missense	c.1355	p.L452S	0.993	NULL	pfam_RNase_III_dom,pfam_dsRNA-bd_dom,superfamily_RNase_III_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DROSHA	HGNC	ENSG00000113360				53	0	0	38	16	29.6296
TARS	0	genome.wustl.edu	37	5	33456256	33456256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	33456256	33456256	G	A	SNP	TARS	ENST00000265112	human	ensembl	74_37	+1	known	missense	c.761	p.C254Y	1.000	pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS	HGNC	ENSG00000113407				42	0	0	12	9	42.8571
RXFP3	0	genome.wustl.edu	37	5	33938173	33938173	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	33938173	33938173	C	A	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	missense	c.1328	p.P443Q	1.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				67	0	0	41	23	35.9375
AMACR	0	genome.wustl.edu	37	5	34005900	34005900	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	34005900	34005900	G	A	SNP	AMACR	ENST00000335606	human	ensembl	74_37	-1	known	missense	c.352	p.R118W	0.000	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	AMACR	HGNC	ENSG00000242110				62	0	0	36	22	37.931
C1QTNF3	0	genome.wustl.edu	37	5	34020736	34020736	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	34020736	34020736	G	C	SNP	C1QTNF3	ENST00000382065	human	ensembl	74_37	-1	known	missense	c.912	p.H304Q	0.999	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF3	HGNC	ENSG00000082196				176	0	0	78	49	38.5827
RAI14	0	genome.wustl.edu	37	5	34823970	34823970	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	34823970	34823970	T	C	SNP	RAI14	ENST00000515799	human	ensembl	74_37	+1	known	missense	c.2032	p.Y678H	0.753	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_t-SNARE,superfamily_UBA-like,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560				70	0	0	41	25	37.8788
PRLR	0	genome.wustl.edu	37	5	35086328	35086328	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	35086328	35086328	A	G	SNP	PRLR	ENST00000382002	human	ensembl	74_37	-1	known	missense	c.185	p.L62P	0.412	pfam_Growth/epo_recpt_lig-bind,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Growth/epo_recpt_lig-bind,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PRLR	HGNC	ENSG00000113494				97	0	0	40	21	34.4262
NIPBL	0	genome.wustl.edu	37	5	36953835	36953835	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	36953835	36953835	C	A	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	missense	c.37	p.L13I	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				114	0	0	55	12	17.9104
C5orf42	0	genome.wustl.edu	37	5	37183564	37183564	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	37183564	37183564	G	A	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	silent	c.4719	p.D1573	0.812	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				45	0	0	22	13	37.1429
C5orf42	0	genome.wustl.edu	37	5	37183688	37183688	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	37183688	37183688	T	C	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	missense	c.4595	p.Q1532R	0.118	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				51	0	0	27	19	41.3043
WDR70	0	genome.wustl.edu	37	5	37697794	37697794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	37697794	37697794	C	T	SNP	WDR70	ENST00000265107	human	ensembl	74_37	+1	known	missense	c.1130	p.S377L	0.271	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR70	HGNC	ENSG00000082068				124	0	0	66	13	16.4557
LIFR	0	genome.wustl.edu	37	5	38506647	38506647	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	38506647	38506647	G	A	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	missense	c.1079	p.A360V	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594				74	0	0	36	18	33.3333
C9	0	genome.wustl.edu	37	5	39341309	39341309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	39341309	39341309	G	A	SNP	C9	ENST00000263408	human	ensembl	74_37	-1	known	missense	c.415	p.R139C	0.510	superfamily_LDrepeatLR_classA_rpt	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600				119	0	0	47	24	33.8028
ZNF131	0	genome.wustl.edu	37	5	43174664	43174664	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	43174664	43174664	A	G	SNP	ZNF131	ENST00000399534	human	ensembl	74_37	+1	known	missense	c.1301	p.E434G	1.000	smart_Znf_C2H2-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262				95	0	0	49	31	38.75
C5orf34	0	genome.wustl.edu	37	5	43505850	43505850	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	43505850	43505850	C	A	SNP	C5orf34	ENST00000306862	human	ensembl	74_37	-1	known	missense	c.932	p.R311M	1.000	NULL	NULL	-	no_errors	C5orf34	HGNC	ENSG00000172244				97	0	0	58	6	9.375
HCN1	0	genome.wustl.edu	37	5	45262085	45262085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	45262085	45262085	A	G	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.2611	p.S871P	0.126	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				156	0	0	57	50	46.729
HCN1	0	genome.wustl.edu	37	5	45262174	45262174	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	45262174	45262174	A	T	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.2522	p.L841H	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				107	0	0	49	33	40.2439
HCN1	0	genome.wustl.edu	37	5	45262506	45262506	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	45262506	45262506	C	T	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.2190	p.M730I	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				34	0	0	35	7	16.6667
PARP8	0	genome.wustl.edu	37	5	50090765	50090765	+	Silent	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	50090765	50090765	G	C	SNP	PARP8	ENST00000281631	human	ensembl	74_37	+1	known	silent	c.942	p.T314	0.051	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883				65	0	0	41	27	39.7059
FST	0	genome.wustl.edu	37	5	52779453	52779453	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	52779453	52779453	G	A	SNP	FST	ENST00000256759	human	ensembl	74_37	+1	known	missense	c.397	p.G133R	1.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,pfam_Follistatin/Osteonectin_EGF,superfamily_TB_dom,smart_Fol_N,smart_Kazal_dom	-	no_errors	FST	HGNC	ENSG00000134363				66	0	0	39	29	42.6471
SNX18	0	genome.wustl.edu	37	5	53815133	53815133	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	53815133	53815133	G	A	SNP	SNX18	ENST00000326277	human	ensembl	74_37	+1	known	missense	c.1351	p.E451K	1.000	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX18	HGNC	ENSG00000178996				80	0	0	80	6	6.97674
IL31RA	0	genome.wustl.edu	37	5	55185844	55185844	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	55185844	55185844	A	G	SNP	IL31RA	ENST00000447346	human	ensembl	74_37	+1	known	missense	c.653	p.Y218C	0.938	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL31RA	HGNC	ENSG00000164509				63	0	0	68	6	8.10811
ANKRD55	0	genome.wustl.edu	37	5	55455711	55455711	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	55455711	55455711	C	T	SNP	ANKRD55	ENST00000341048	human	ensembl	74_37	-1	known	silent	c.432	p.T144	0.760	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD55	HGNC	ENSG00000164512				86	0	0	35	25	41.6667
PLK2	0	genome.wustl.edu	37	5	57753397	57753397	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	57753397	57753397	T	C	SNP	PLK2	ENST00000274289	human	ensembl	74_37	-1	known	missense	c.727	p.T243A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK2	HGNC	ENSG00000145632				75	0	0	22	9	29.0323
RAB3C	0	genome.wustl.edu	37	5	58147175	58147175	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	58147175	58147175	C	T	SNP	RAB3C	ENST00000282878	human	ensembl	74_37	+1	known	silent	c.681	p.C227	0.998	superfamily_P-loop_NTPase,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3C	HGNC	ENSG00000152932				66	0	0	58	11	15.942
DEPDC1B	0	genome.wustl.edu	37	5	59982907	59982907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	59982907	59982907	C	T	SNP	DEPDC1B	ENST00000265036	human	ensembl	74_37	-1	known	missense	c.196	p.E66K	0.992	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom,pfscan_RhoGAP_dom	-	no_errors	DEPDC1B	HGNC	ENSG00000035499				179	0	0	73	46	38.6555
ADAMTS6	0	genome.wustl.edu	37	5	64520823	64520823	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	64520823	64520823	G	A	SNP	ADAMTS6	ENST00000381055	human	ensembl	74_37	-1	known	nonsense	c.2119	p.R707*	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192				49	0	0	24	13	35.1351
MAST4	0	genome.wustl.edu	37	5	66460174	66460174	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	66460174	66460174	G	T	SNP	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	missense	c.5176	p.V1726F	0.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				47	0	0	20	10	33.3333
OCLN	0	genome.wustl.edu	37	5	68805476	68805476	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	68805476	68805476	T	C	SNP	OCLN	ENST00000355237	human	ensembl	74_37	+1	known	missense	c.559	p.F187L	1.000	pfam_Marvel,pirsf_Occludin	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel,pirsf_Occludin,prints_Occludin	-	no_errors	OCLN	HGNC	ENSG00000197822				275	0	0	91	61	40.1316
BDP1	0	genome.wustl.edu	37	5	70751890	70751890	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	70751890	70751890	G	A	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	silent	c.186	p.E62	0.217	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				42	0	0	24	6	20
ZNF366	0	genome.wustl.edu	37	5	71740012	71740012	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	71740012	71740012	C	A	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	silent	c.1806	p.P602	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				148	0	0	109	12	9.91736
TNPO1	0	genome.wustl.edu	37	5	72171563	72171563	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	72171563	72171563	A	C	SNP	TNPO1	ENST00000337273	human	ensembl	74_37	+1	known	missense	c.800	p.E267A	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312				89	0	0	48	32	40
TNPO1	0	genome.wustl.edu	37	5	72201192	72201192	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	72201192	72201192	T	C	SNP	TNPO1	ENST00000337273	human	ensembl	74_37	+1	known	silent	c.2652	p.F884	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312				124	0	0	46	30	39.4737
TMEM174	0	genome.wustl.edu	37	5	72469088	72469088	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	72469088	72469088	C	T	SNP	TMEM174	ENST00000296776	human	ensembl	74_37	+1	known	silent	c.18	p.G6	0.188	NULL	NULL	-	no_errors	TMEM174	HGNC	ENSG00000164325				256	0	0	97	75	43.6047
HMGCR	0	genome.wustl.edu	37	5	74655258	74655258	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	74655258	74655258	T	C	SNP	HMGCR	ENST00000287936	human	ensembl	74_37	+1	known	silent	c.2334	p.I778	1.000	pfam_HMG_CoA_Rdtase,superfamily_HMG_CoA_Rdtase_sub-bd,pfscan_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161				79	0	0	26	23	46.9388
COL4A3BP	0	genome.wustl.edu	37	5	74722269	74722269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	74722269	74722269	C	T	SNP	COL4A3BP	ENST00000380494	human	ensembl	74_37	-1	known	missense	c.767	p.R256H	1.000	NULL	pfam_START_lipid-bd_dom,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_START_lipid-bd_dom,pfscan_Pleckstrin_homology,pfscan_START_lipid-bd_dom	-	no_errors	COL4A3BP	HGNC	ENSG00000113163				83	0	0	50	18	26.4706
ZDHHC11B	0	genome.wustl.edu	37	5	751277	751277	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	751277	751277	C	A	SNP	ZDHHC11B	ENST00000382776	human	ensembl	74_37	-1	known	missense	c.599	p.R200M	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11B	HGNC	ENSG00000206077				42	0	0	33	20	37.7358
F2RL2	0	genome.wustl.edu	37	5	75913673	75913673	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	75913673	75913673	G	T	SNP	F2RL2	ENST00000296641	human	ensembl	74_37	-1	known	silent	c.859	p.R287	0.023	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Prot_act_rcpt_3,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	F2RL2	HGNC	ENSG00000164220				28	0	0	21	5	19.2308
VCAN	0	genome.wustl.edu	37	5	82834774	82834774	+	Silent	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	82834774	82834774	T	G	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	silent	c.5952	p.S1984	0.118	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				64	0	0	51	5	8.92857
EDIL3	0	genome.wustl.edu	37	5	83680139	83680139	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	83680139	83680139	G	A	SNP	EDIL3	ENST00000296591	human	ensembl	74_37	-1	known	silent	c.54	p.P18	0.672	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_Galactose-bd-like,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	EDIL3	HGNC	ENSG00000164176				106	0	0	111	13	10.4839
POU5F2	0	genome.wustl.edu	37	5	93076928	93076928	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	93076928	93076928	C	T	SNP	POU5F2	ENST00000510627	human	ensembl	74_37	-1	known	silent	c.342	p.P114	0.011	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU5F2	HGNC	ENSG00000248483				74	0	0	44	13	22.807
FAM172A	0	genome.wustl.edu	37	5	93217235	93217235	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	93217235	93217235	A	G	SNP	FAM172A	ENST00000395965	human	ensembl	74_37	-1	known	missense	c.727	p.F243L	1.000	NULL	pfam_Arb2_domain	-	no_errors	FAM172A	HGNC	ENSG00000113391				126	0	0	40	28	41.1765
RHOBTB3	0	genome.wustl.edu	37	5	95116060	95116060	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	95116060	95116060	G	A	SNP	RHOBTB3	ENST00000379982	human	ensembl	74_37	+1	known	missense	c.1387	p.V463I	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,superfamily_BTB/POZ_fold,superfamily_P-loop_NTPase,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	RHOBTB3	HGNC	ENSG00000164292				81	0	0	22	20	47.619
PCSK1	0	genome.wustl.edu	37	5	95746544	95746544	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	95746544	95746544	G	A	SNP	PCSK1	ENST00000311106	human	ensembl	74_37	-1	known	silent	c.1029	p.Y343	0.218	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,pfam_Proho_convert,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK1	HGNC	ENSG00000175426				198	0	0	111	79	41.5789
PCSK1	0	genome.wustl.edu	37	5	95768714	95768714	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	95768714	95768714	A	G	SNP	PCSK1	ENST00000311106	human	ensembl	74_37	-1	known	silent	c.33	p.T11	0.011	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,pfam_Proho_convert,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK1	HGNC	ENSG00000175426				200	0	0	149	62	29.3839
FAM174A	0	genome.wustl.edu	37	5	99871377	99871377	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	99871377	99871377	C	A	SNP	FAM174A	ENST00000312637	human	ensembl	74_37	+1	known	missense	c.143	p.P48H	0.000	pfam_DUF1180	pfam_DUF1180	-	no_errors	FAM174A	HGNC	ENSG00000174132				55	0	0	25	19	43.1818
TFAP2A	0	genome.wustl.edu	37	6	10398771	10398771	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	10398771	10398771	A	G	SNP	TFAP2A	ENST00000379604	human	ensembl	74_37	-1	known	missense	c.1193	p.L398P	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_alpha_N	-	no_errors	TFAP2A	HGNC	ENSG00000137203				394	0	0	257	184	41.7234
BEND3	0	genome.wustl.edu	37	6	107390110	107390110	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	107390110	107390110	T	C	SNP	BEND3	ENST00000369042	human	ensembl	74_37	-1	known	missense	c.2285	p.N762S	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409				94	0	0	53	42	44.2105
BEND3	0	genome.wustl.edu	37	6	107390608	107390608	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	107390608	107390608	T	C	SNP	BEND3	ENST00000369042	human	ensembl	74_37	-1	known	missense	c.1787	p.N596S	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409				68	0	0	26	28	51.8519
SCML4	0	genome.wustl.edu	37	6	108066261	108066261	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	108066261	108066261	G	C	SNP	SCML4	ENST00000369021	human	ensembl	74_37	-1	known	missense	c.487	p.L163V	1.000	pfam_DUF3588	pfam_DUF3588	-	no_errors	SCML4	HGNC	ENSG00000146285				37	0	0	24	17	41.4634
MICAL1	0	genome.wustl.edu	37	6	109774467	109774467	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	109774467	109774467	C	A	SNP	MICAL1	ENST00000368952	human	ensembl	74_37	-1	known	missense	c.627	p.K209N	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL1	HGNC	ENSG00000135596				67	0	0	35	11	23.913
ZBTB24	0	genome.wustl.edu	37	6	109802745	109802745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	109802745	109802745	C	T	SNP	ZBTB24	ENST00000230122	human	ensembl	74_37	-1	known	missense	c.485	p.R162Q	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB24	HGNC	ENSG00000112365				254	0	0	87	58	40
AK9	0	genome.wustl.edu	37	6	109983847	109983847	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	109983847	109983847	T	C	SNP	AK9	ENST00000424296	human	ensembl	74_37	-1	known	missense	c.351	p.I117M	0.750	pfam_Adenylate_kin,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085				108	0	0	39	25	39.0625
WASF1	0	genome.wustl.edu	37	6	110423373	110423373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	110423373	110423373	C	T	SNP	WASF1	ENST00000359451	human	ensembl	74_37	-1	known	missense	c.940	p.G314S	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF1	HGNC	ENSG00000112290				148	0	0	87	30	25.641
GTF3C6	0	genome.wustl.edu	37	6	111288882	111288882	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	111288882	111288882	T	C	SNP	GTF3C6	ENST00000329970	human	ensembl	74_37	+1	known	silent	c.531	p.S177	0.000	NULL	pfam_TFIIIC_tau55-rel	-	no_errors	GTF3C6	HGNC	ENSG00000155115				117	0	0	56	35	38.4615
REV3L	0	genome.wustl.edu	37	6	111697073	111697073	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	111697073	111697073	G	T	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	silent	c.2485	p.R829	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				73	0	0	16	11	40.7407
TRAF3IP2	0	genome.wustl.edu	37	6	111884186	111884186	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	111884186	111884186	G	A	SNP	TRAF3IP2	ENST00000340026	human	ensembl	74_37	-1	known	silent	c.1560	p.L520	1.000	pfam_SEFIR	pfam_SEFIR	-	no_errors	TRAF3IP2	HGNC	ENSG00000056972				28	0	0	9	8	47.0588
TUBE1	0	genome.wustl.edu	37	6	112397371	112397371	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	112397371	112397371	T	C	SNP	TUBE1	ENST00000605457	human	ensembl	74_37	-1	known	missense	c.640	p.I214V	0.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935				72	0	0	14	13	48.1481
LAMA4	0	genome.wustl.edu	37	6	112461980	112461980	+	Silent	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	112461980	112461980	T	A	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	silent	c.2958	p.G986	0.012	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				61	0	0	17	8	32
LAMA4	0	genome.wustl.edu	37	6	112461999	112461999	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	112461999	112461999	G	C	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	missense	c.2939	p.T980R	0.787	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				68	0	0	20	8	28.5714
LAMA4	0	genome.wustl.edu	37	6	112512907	112512907	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	112512907	112512907	T	C	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	missense	c.649	p.T217A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				70	0	0	31	12	27.907
MARCKS	0	genome.wustl.edu	37	6	114181628	114181628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	114181628	114181628	C	T	SNP	MARCKS	ENST00000368635	human	ensembl	74_37	+1	known	missense	c.872	p.P291L	0.000	pfam_MARCKS	pfam_MARCKS,prints_MARCKS	-	no_errors	MARCKS	HGNC	ENSG00000155130				8	0	0	9	10	52.6316
NT5DC1	0	genome.wustl.edu	37	6	116542304	116542304	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	116542304	116542304	G	A	SNP	NT5DC1	ENST00000319550	human	ensembl	74_37	+1	known	missense	c.617	p.R206Q	0.003	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom	-	no_errors	NT5DC1	HGNC	ENSG00000178425				111	0	0	42	29	40.8451
DSE	0	genome.wustl.edu	37	6	116758093	116758093	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	116758093	116758093	C	T	SNP	DSE	ENST00000537543	human	ensembl	74_37	+1	known	missense	c.2519	p.A840V	0.995	NULL	superfamily_Chondroitin_lyas	-	no_errors	DSE	HGNC	ENSG00000111817				73	0	0	35	10	22.2222
FAM26D	0	genome.wustl.edu	37	6	116879011	116879011	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	116879011	116879011	C	A	SNP	FAM26D	ENST00000368596	human	ensembl	74_37	+1	known	silent	c.582	p.T194	0.997	NULL	NULL	-	no_errors	FAM26D	HGNC	ENSG00000164451				101	0	0	27	28	50.9091
FAM184A	0	genome.wustl.edu	37	6	119327663	119327663	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	119327663	119327663	G	T	SNP	FAM184A	ENST00000338891	human	ensembl	74_37	-1	known	missense	c.1764	p.D588E	0.693	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879				128	0	0	72	13	15.2941
HIVEP1	0	genome.wustl.edu	37	6	12015864	12015864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	12015864	12015864	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				94	0	0	61	20	24.6914
HIVEP1	0	genome.wustl.edu	37	6	12124064	12124064	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	12124064	12124064	A	G	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.4036	p.M1346V	0.003	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				77	0	0	28	26	48.1481
TBC1D32	0	genome.wustl.edu	37	6	121434207	121434207	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	121434207	121434207	T	C	SNP	TBC1D32	ENST00000464622	human	ensembl	74_37	-1	known	splice_site	c.327+1	e3+1	0.359	-	-	-	no_errors	TBC1D32	HGNC	ENSG00000146350				123	0	0	65	6	8.4507
HSF2	0	genome.wustl.edu	37	6	122733884	122733884	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	122733884	122733884	A	G	SNP	HSF2	ENST00000368455	human	ensembl	74_37	+1	known	missense	c.305	p.D102G	1.000	pfam_HSF_DNA-bd,smart_HSF_DNA-bd	pfam_Vert_HSTF_C,pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF2	HGNC	ENSG00000025156				117	0	0	58	46	44.2308
TRDN	0	genome.wustl.edu	37	6	123824907	123824907	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	123824907	123824907	C	A	SNP	TRDN	ENST00000398178	human	ensembl	74_37	-1	known	missense	c.750	p.K250N	0.986	pfam_Asp-B-hydro/Triadin_dom	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439				33	0	0	9	9	50
PTPRK	0	genome.wustl.edu	37	6	128388839	128388839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	128388839	128388839	G	A	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	missense	c.1982	p.A661V	0.969	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				121	0	0	47	32	40.5063
PTPRK	0	genome.wustl.edu	37	6	128399981	128399981	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	128399981	128399981	T	C	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	silent	c.1860	p.A620	0.962	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				74	0	0	49	6	10.9091
LAMA2	0	genome.wustl.edu	37	6	129608990	129608990	+	Splice_Site	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	129608990	129608990	A	G	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	splice_site	c.2538-2	e19-2	1.000	-	-	-	no_errors	LAMA2	HGNC	ENSG00000196569				158	0	0	83	9	9.78261
MED23	0	genome.wustl.edu	37	6	131912629	131912629	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	131912629	131912629	A	G	SNP	MED23	ENST00000368058	human	ensembl	74_37	-1	known	silent	c.3528	p.S1176	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282				80	0	0	41	31	43.0556
OR2A4	0	genome.wustl.edu	37	6	132022490	132022490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	132022490	132022490	C	T	SNP	OR2A4	ENST00000315453	human	ensembl	74_37	-1	known	missense	c.52	p.V18I	0.010	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A4	HGNC	ENSG00000180658				92	0	0	71	7	8.97436
CTGF	0	genome.wustl.edu	37	6	132270418	132270418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	132270418	132270418	C	T	SNP	CTGF	ENST00000367976	human	ensembl	74_37	-1	known	missense	c.1036	p.G346R	1.000	pirsf_IGFBP_CNN	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CTGF	HGNC	ENSG00000118523				112	0	0	43	27	38.5714
CTGF	0	genome.wustl.edu	37	6	132270441	132270441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	132270441	132270441	G	A	SNP	CTGF	ENST00000367976	human	ensembl	74_37	-1	known	missense	c.1013	p.S338L	1.000	pfam_Cys_knot,pirsf_IGFBP_CNN	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CTGF	HGNC	ENSG00000118523				132	0	0	52	38	42.2222
TAAR5	0	genome.wustl.edu	37	6	132910558	132910558	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	132910558	132910558	G	T	SNP	TAAR5	ENST00000258034	human	ensembl	74_37	-1	known	missense	c.268	p.L90I	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_TAAR_fam	-	no_errors	TAAR5	HGNC	ENSG00000135569				145	0	0	62	56	47.4576
EYA4	0	genome.wustl.edu	37	6	133783831	133783831	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	133783831	133783831	G	A	SNP	EYA4	ENST00000355167	human	ensembl	74_37	+1	known	missense	c.653	p.G218D	1.000	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319				67	0	0	34	29	46.0317
BCLAF1	0	genome.wustl.edu	37	6	136597544	136597544	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	136597544	136597544	T	C	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	silent	c.1119	p.G373	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				476	1	0.209644	255	59	18.7898
TNFAIP3	0	genome.wustl.edu	37	6	138197238	138197238	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	138197238	138197238	C	A	SNP	TNFAIP3	ENST00000237289	human	ensembl	74_37	+1	known	missense	c.740	p.P247H	1.000	pfam_OTU,pfscan_OTU	pfam_Znf_A20,pfam_OTU,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	TNFAIP3	HGNC	ENSG00000118503				88	0	0	65	4	5.7971
HIVEP2	0	genome.wustl.edu	37	6	143093049	143093049	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	143093049	143093049	G	A	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	nonsense	c.2827	p.R943*	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				94	0	0	57	27	32.1429
PHACTR2	0	genome.wustl.edu	37	6	144086872	144086872	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	144086872	144086872	C	T	SNP	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	missense	c.1169	p.P390L	0.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419				141	0	0	89	20	18.3486
UTRN	0	genome.wustl.edu	37	6	144803436	144803436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	144803436	144803436	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.3599	p.G1200D	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				89	0	0	39	35	47.2973
KATNBL1P6	0	genome.wustl.edu	37	6	147124814	147124814	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	147124814	147124814	C	T	SNP	KATNBL1P6	ENST00000562413	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	KATNBL1P6	HGNC	ENSG00000228283				18	0	0	14	5	26.3158
SASH1	0	genome.wustl.edu	37	6	148840732	148840732	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	148840732	148840732	C	T	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	silent	c.912	p.S304	0.000	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				88	0	0	31	29	48.3333
UST	0	genome.wustl.edu	37	6	149262500	149262500	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	149262500	149262500	C	T	SNP	UST	ENST00000367463	human	ensembl	74_37	+1	known	missense	c.377	p.S126L	1.000	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	UST	HGNC	ENSG00000111962				157	0	0	81	26	24.2991
PPIL4	0	genome.wustl.edu	37	6	149826728	149826728	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	149826728	149826728	C	T	SNP	PPIL4	ENST00000253329	human	ensembl	74_37	-1	known	missense	c.1340	p.R447Q	0.998	NULL	pfam_Cyclophilin-like_PPIase_dom,pfam_RRM_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL4	HGNC	ENSG00000131013				92	0	0	30	15	33.3333
KATNA1	0	genome.wustl.edu	37	6	149918221	149918221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	149918221	149918221	C	T	SNP	KATNA1	ENST00000335647	human	ensembl	74_37	-1	known	missense	c.1255	p.A419T	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	KATNA1	HGNC	ENSG00000186625				92	0	0	35	11	23.913
PCMT1	0	genome.wustl.edu	37	6	150114765	150114765	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	150114765	150114765	C	T	SNP	PCMT1	ENST00000367384	human	ensembl	74_37	+1	known	silent	c.552	p.D184	0.994	pfam_PCMT,tigrfam_PCMT	pfam_PCMT,tigrfam_PCMT	-	no_errors	PCMT1	HGNC	ENSG00000120265				57	0	0	23	7	23.3333
PLEKHG1	0	genome.wustl.edu	37	6	151130806	151130806	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	151130806	151130806	G	T	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	missense	c.1214	p.R405L	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				67	0	0	30	19	38.7755
ZBTB2	0	genome.wustl.edu	37	6	151687417	151687417	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	151687417	151687417	G	A	SNP	ZBTB2	ENST00000325144	human	ensembl	74_37	-1	known	missense	c.784	p.R262C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB2	HGNC	ENSG00000181472				157	0	0	72	54	42.8571
C6orf211	0	genome.wustl.edu	37	6	151775783	151775783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	151775783	151775783	G	A	SNP	C6orf211	ENST00000367294	human	ensembl	74_37	+1	known	missense	c.142	p.G48R	1.000	pfam_DUF89,superfamily_DUF89	pfam_DUF89,superfamily_DUF89	-	no_errors	C6orf211	HGNC	ENSG00000146476				79	0	0	25	3	10.7143
SYNE1	0	genome.wustl.edu	37	6	152590320	152590320	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	152590320	152590320	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.18675	p.Q6225	0.880	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				67	0	0	51	11	17.7419
SYNE1	0	genome.wustl.edu	37	6	152605226	152605226	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	152605226	152605226	A	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.18094	p.S6032P	0.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				88	0	0	30	23	43.3962
SYNE1	0	genome.wustl.edu	37	6	152658027	152658027	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	152658027	152658027	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.12477	p.R4159	0.989	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				105	0	0	63	5	7.35294
VIP	0	genome.wustl.edu	37	6	153075360	153075360	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	153075360	153075360	A	T	SNP	VIP	ENST00000367244	human	ensembl	74_37	+1	known	missense	c.167	p.E56V	0.139	NULL	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP	-	no_errors	VIP	HGNC	ENSG00000146469				73	0	0	10	19	65.5172
MTRF1L	0	genome.wustl.edu	37	6	153315697	153315697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	153315697	153315697	C	T	SNP	MTRF1L	ENST00000367233	human	ensembl	74_37	-1	known	missense	c.638	p.R213H	1.000	NULL	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1L	HGNC	ENSG00000112031				118	0	0	53	23	30.2632
JARID2	0	genome.wustl.edu	37	6	15512511	15512511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	15512511	15512511	G	A	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.3025	p.V1009I	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				111	0	0	71	32	31.068
SCAF8	0	genome.wustl.edu	37	6	155153803	155153803	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	155153803	155153803	T	C	SNP	SCAF8	ENST00000367186	human	ensembl	74_37	+1	known	silent	c.3288	p.P1096	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079				110	0	0	56	19	25.3333
TFB1M	0	genome.wustl.edu	37	6	155579106	155579106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	155579106	155579106	C	T	SNP	TFB1M	ENST00000367166	human	ensembl	74_37	-1	known	missense	c.905	p.S302N	0.980	NULL	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N	-	no_errors	TFB1M	HGNC	ENSG00000029639				133	0	0	66	53	44.5378
IGF2R	0	genome.wustl.edu	37	6	160493903	160493903	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	160493903	160493903	C	T	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	silent	c.4677	p.C1559	0.001	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				226	0	0	141	29	17.0588
IGF2R	0	genome.wustl.edu	37	6	160523613	160523613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	160523613	160523613	G	A	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.6905	p.R2302Q	1.000	NULL	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				45	0	0	35	18	33.9623
SLC22A2	0	genome.wustl.edu	37	6	160670398	160670398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	160670398	160670398	C	T	SNP	SLC22A2	ENST00000366953	human	ensembl	74_37	-1	known	missense	c.692	p.R231Q	0.109	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A2	HGNC	ENSG00000112499				152	0	0	88	38	30.1587
SLC22A3	0	genome.wustl.edu	37	6	160868775	160868775	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	160868775	160868775	G	A	SNP	SLC22A3	ENST00000392145	human	ensembl	74_37	+1	known	missense	c.1538	p.G513D	0.658	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A3	HGNC	ENSG00000146477				106	0	0	28	34	54.8387
C6orf118	0	genome.wustl.edu	37	6	165706838	165706838	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	165706838	165706838	G	A	SNP	C6orf118	ENST00000543069	human	ensembl	74_37	-1	known	missense	c.872	p.A291V	0.003	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				117	0	0	64	64	50
C6orf118	0	genome.wustl.edu	37	6	165715177	165715177	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	165715177	165715177	C	T	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	missense	c.634	p.A212T	0.000	superfamily_Ribonuclease/ribotoxin	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				88	0	0	44	36	45
PDE10A	0	genome.wustl.edu	37	6	165746572	165746572	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	165746572	165746572	G	A	SNP	PDE10A	ENST00000539869	human	ensembl	74_37	-1	known	missense	c.2312	p.T771I	0.714	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541				130	0	0	76	19	20
T	0	genome.wustl.edu	37	6	166574379	166574379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	166574379	166574379	G	A	SNP	T	ENST00000296946	human	ensembl	74_37	-1	known	missense	c.980	p.A327V	0.691	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_Brachyury,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	T	HGNC	ENSG00000164458				107	0	0	59	36	37.8947
RPS6KA2	0	genome.wustl.edu	37	6	166836791	166836791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	166836791	166836791	C	T	SNP	RPS6KA2	ENST00000510118	human	ensembl	74_37	-1	known	missense	c.1771	p.G591R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242				59	0	0	64	4	5.88235
TCTE3	0	genome.wustl.edu	37	6	170143237	170143237	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	170143237	170143237	T	C	SNP	TCTE3	ENST00000366774	human	ensembl	74_37	-1	known	missense	c.425	p.Y142C	0.046	pfam_Tctex	pfam_Tctex	-	no_errors	TCTE3	HGNC	ENSG00000184786				111	0	0	42	29	40.8451
ERMARD	0	genome.wustl.edu	37	6	170176681	170176681	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	170176681	170176681	A	G	SNP	ERMARD	ENST00000366773	human	ensembl	74_37	+1	known	missense	c.1651	p.T551A	0.000	NULL	NULL	-	no_errors	ERMARD	HGNC	ENSG00000130023				49	0	0	57	5	8.06452
FAM120B	0	genome.wustl.edu	37	6	170632310	170632310	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	170632310	170632310	A	G	SNP	FAM120B	ENST00000537664	human	ensembl	74_37	+1	known	silent	c.1947	p.R649	0.987	NULL	NULL	-	no_errors	FAM120B	HGNC	ENSG00000112584				100	0	0	28	19	40.4255
TBP	0	genome.wustl.edu	37	6	170871061	170871061	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	170871061	170871061	G	A	SNP	TBP	ENST00000230354	human	ensembl	74_37	+1	known	silent	c.237	p.Q79	0.988	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592				59	0	0	69	10	12.6582
GMDS	0	genome.wustl.edu	37	6	1726689	1726689	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	1726689	1726689	G	A	SNP	GMDS	ENST00000380815	human	ensembl	74_37	-1	known	silent	c.948	p.H316	1.000	tigrfam_GDP_Man_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,tigrfam_GDP_Man_deHydtase	-	no_errors	GMDS	HGNC	ENSG00000112699				115	1	0.862069	50	35	41.1765
FAM8A1	0	genome.wustl.edu	37	6	17601001	17601001	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	17601001	17601001	C	T	SNP	FAM8A1	ENST00000259963	human	ensembl	74_37	+1	known	silent	c.361	p.L121	1.000	NULL	pfam_RDD	-	no_errors	FAM8A1	HGNC	ENSG00000137414				70	0	0	48	24	33.3333
FAM8A1	0	genome.wustl.edu	37	6	17602852	17602852	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	17602852	17602852	C	T	SNP	FAM8A1	ENST00000259963	human	ensembl	74_37	+1	known	silent	c.744	p.H248	1.000	pfam_RDD	pfam_RDD	-	no_errors	FAM8A1	HGNC	ENSG00000137414				97	0	0	35	17	32.6923
MRS2	0	genome.wustl.edu	37	6	24403213	24403213	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	24403213	24403213	G	T	SNP	MRS2	ENST00000483634	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MRS2	HGNC	ENSG00000124532				34	0	0	22	11	33.3333
ALDH5A1	0	genome.wustl.edu	37	6	24533872	24533872	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	24533872	24533872	C	T	SNP	ALDH5A1	ENST00000348925	human	ensembl	74_37	+1	known	nonsense	c.1579	p.R527*	0.976	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	-	no_errors	ALDH5A1	HGNC	ENSG00000112294				134	0	0	61	36	37.1134
LOC101928663	0	genome.wustl.edu	37	6	25261469	25261469	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	25261469	25261469	G	A	SNP	LOC101928663	ENST00000413898	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP3-522P13.3	Clone_based_vega_gene	ENSG00000235733				8	0	0	10	3	23.0769
HIST1H4B	0	genome.wustl.edu	37	6	26027254	26027254	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	26027254	26027254	T	C	SNP	HIST1H4B	ENST00000377364	human	ensembl	74_37	-1	known	missense	c.227	p.H76R	1.000	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4B	HGNC	ENSG00000124529				89	0	0	57	39	40.625
HIST1H2BC	0	genome.wustl.edu	37	6	26123766	26123766	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	26123766	26123766	T	C	SNP	HIST1H2BC	ENST00000314332	human	ensembl	74_37	-1	known	missense	c.367	p.T123A	1.000	superfamily_Histone-fold,smart_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596				128	0	0	76	35	31.5315
HIST1H2BC	0	genome.wustl.edu	37	6	26123773	26123773	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	26123773	26123773	G	A	SNP	HIST1H2BC	ENST00000314332	human	ensembl	74_37	-1	known	silent	c.360	p.T120	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596				122	0	0	64	51	44.3478
HIST1H2AD	0	genome.wustl.edu	37	6	26199429	26199429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	26199429	26199429	C	T	SNP	HIST1H2AD	ENST00000341023	human	ensembl	74_37	-1	known	missense	c.43	p.A15T	1.000	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AD	HGNC	ENSG00000196866				44	0	0	30	16	34.7826
HIST1H3G	0	genome.wustl.edu	37	6	26271325	26271325	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	26271325	26271325	G	T	SNP	HIST1H3G	ENST00000305910	human	ensembl	74_37	-1	known	silent	c.288	p.A96	0.994	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3G	HGNC	ENSG00000256018				175	0	0	153	9	5.55556
ZNF184	0	genome.wustl.edu	37	6	27420877	27420877	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	27420877	27420877	T	C	SNP	ZNF184	ENST00000211936	human	ensembl	74_37	-1	known	missense	c.461	p.Q154R	0.066	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF184	HGNC	ENSG00000096654				185	0	0	62	40	39.2157
HIST1H2BM	0	genome.wustl.edu	37	6	27782980	27782980	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	27782980	27782980	C	T	SNP	HIST1H2BM	ENST00000359465	human	ensembl	74_37	+1	known	silent	c.159	p.T53	0.978	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BM	HGNC	ENSG00000196374				286	0	0	138	75	35.2113
HIST1H2BM	0	genome.wustl.edu	37	6	27783176	27783176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	27783176	27783176	G	A	SNP	HIST1H2BM	ENST00000359465	human	ensembl	74_37	+1	known	missense	c.355	p.V119I	1.000	superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BM	HGNC	ENSG00000196374				91	0	0	57	31	35.2273
HIST1H4K	0	genome.wustl.edu	37	6	27799300	27799300	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	27799300	27799300	A	G	SNP	HIST1H4K	ENST00000357549	human	ensembl	74_37	-1	known	silent	c.6	p.S2	1.000	superfamily_Histone-fold	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4K	HGNC	ENSG00000197914				94	0	0	71	23	24.4681
ZSCAN16	0	genome.wustl.edu	37	6	28097507	28097507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	28097507	28097507	C	T	SNP	ZSCAN16	ENST00000340487	human	ensembl	74_37	+1	known	missense	c.826	p.R276C	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN16	HGNC	ENSG00000196812				79	0	0	46	7	13.2075
ZKSCAN4	0	genome.wustl.edu	37	6	28214760	28214760	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	28214760	28214760	G	T	SNP	ZKSCAN4	ENST00000377294	human	ensembl	74_37	-1	known	missense	c.765	p.S255R	0.558	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN4	HGNC	ENSG00000187626				103	0	0	72	5	6.49351
ZKSCAN3	0	genome.wustl.edu	37	6	28327560	28327560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	28327560	28327560	G	A	SNP	ZKSCAN3	ENST00000252211	human	ensembl	74_37	+1	known	missense	c.197	p.R66Q	0.824	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN3	HGNC	ENSG00000189298				139	0	0	74	42	36.2069
SCAND3	0	genome.wustl.edu	37	6	28543226	28543226	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	28543226	28543226	T	C	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.1256	p.H419R	1.000	pfam_Integrase_cat-core,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				93	0	0	32	17	34.6939
OR14J1	0	genome.wustl.edu	37	6	29274602	29274602	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	29274602	29274602	A	G	SNP	OR14J1	ENST00000377160	human	ensembl	74_37	+1	known	missense	c.136	p.I46V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14J1	HGNC	ENSG00000204695				181	1	0.549451	78	47	37.6
HLA-F	0	genome.wustl.edu	37	6	29691536	29691536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	29691536	29691536	C	T	SNP	HLA-F	ENST00000259951	human	ensembl	74_37	+1	known	missense	c.166	p.R56W	0.997	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-F	HGNC	ENSG00000204642				20	0	0	18	9	33.3333
HLA-F	0	genome.wustl.edu	37	6	29691907	29691907	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	29691907	29691907	G	T	SNP	HLA-F	ENST00000485513	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	HLA-F	HGNC	ENSG00000204642				40	0	0	15	22	59.4595
TRIM26	0	genome.wustl.edu	37	6	30154113	30154113	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	30154113	30154113	T	C	SNP	TRIM26	ENST00000437089	human	ensembl	74_37	-1	known	missense	c.1160	p.D387G	0.069	superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM26	HGNC	ENSG00000234127				82	0	0	39	29	42.6471
GNL1	0	genome.wustl.edu	37	6	30514078	30514078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	30514078	30514078	G	A	SNP	GNL1	ENST00000376621	human	ensembl	74_37	-1	known	missense	c.1595	p.S532F	1.000	NULL	pfam_GTP_binding_domain,superfamily_P-loop_NTPase	-	no_errors	GNL1	HGNC	ENSG00000204590				10	0	0	5	8	61.5385
PPP1R18	0	genome.wustl.edu	37	6	30653469	30653469	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	30653469	30653469	T	C	SNP	PPP1R18	ENST00000274853	human	ensembl	74_37	-1	known	silent	c.327	p.L109	0.000	NULL	NULL	-	no_errors	PPP1R18	HGNC	ENSG00000146112				117	0	0	95	8	7.76699
TUBB2A	0	genome.wustl.edu	37	6	3154755	3154755	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	3154755	3154755	T	C	SNP	TUBB2A	ENST00000333628	human	ensembl	74_37	-1	known	missense	c.680	p.H227R	1.000	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2A	HGNC	ENSG00000137267				56	0	0	30	18	37.5
TUBB2A	0	genome.wustl.edu	37	6	3157684	3157684	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	3157684	3157684	A	G	SNP	TUBB2A	ENST00000333628	human	ensembl	74_37	-1	known	missense	c.14	p.V5A	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2A	HGNC	ENSG00000137267				11	0	0	13	3	18.75
PRRC2A	0	genome.wustl.edu	37	6	31593589	31593589	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	31593589	31593589	G	A	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	silent	c.780	p.P260	0.977	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				73	0	0	39	36	48
PRRC2A	0	genome.wustl.edu	37	6	31599250	31599250	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	31599250	31599250	C	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.2800	p.R934C	0.998	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				18	0	0	16	3	15.7895
PRRC2A	0	genome.wustl.edu	37	6	31600180	31600180	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	31600180	31600180	C	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	nonsense	c.3730	p.R1244*	0.035	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				74	0	0	43	29	40.2778
VARS	0	genome.wustl.edu	37	6	31745394	31745394	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	31745394	31745394	C	A	SNP	VARS	ENST00000375663	human	ensembl	74_37	-1	known	missense	c.3772	p.A1258S	0.131	superfamily_tRNA-bd_arm	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS	HGNC	ENSG00000204394				25	0	0	28	8	22.2222
HSPA1L	0	genome.wustl.edu	37	6	31777884	31777884	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	31777884	31777884	G	A	SNP	HSPA1L	ENST00000375654	human	ensembl	74_37	-1	known	silent	c.1866	p.C622	0.002	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1L	HGNC	ENSG00000204390				91	0	0	35	27	43.5484
HSPA1A	0	genome.wustl.edu	37	6	31783543	31783543	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	31783543	31783543	G	T	SNP	HSPA1A	ENST00000375651	human	ensembl	74_37	+1	known	missense	c.10	p.A4S	0.002	NULL	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1A	HGNC	ENSG00000204389				98	0	0	75	26	25.7426
PRRT1	0	genome.wustl.edu	37	6	32116928	32116928	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	32116928	32116928	G	A	SNP	PRRT1	ENST00000467780	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.911	-	-	-	no_errors	PRRT1	HGNC	ENSG00000204314				11	0	0	10	6	37.5
NOTCH4	0	genome.wustl.edu	37	6	32187376	32187376	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	32187376	32187376	G	A	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	silent	c.1503	p.C501	1.000	pirsf_Notch,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				34	0	0	17	10	37.037
TUBB2B	0	genome.wustl.edu	37	6	3225036	3225036	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	3225036	3225036	C	T	SNP	TUBB2B	ENST00000259818	human	ensembl	74_37	-1	known	silent	c.1287	p.T429	0.257	superfamily_Tub_FtsZ_C,prints_Beta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2B	HGNC	ENSG00000137285				62	0	0	60	36	37.5
HLA-DRA	0	genome.wustl.edu	37	6	32410339	32410339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	32410339	32410339	C	T	SNP	HLA-DRA	ENST00000395388	human	ensembl	74_37	+1	known	missense	c.197	p.T66M	0.934	pfam_MHC_II_a_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N	pfam_MHC_II_a_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DRA	HGNC	ENSG00000204287				151	0	0	118	10	7.8125
TAP2	0	genome.wustl.edu	37	6	32803064	32803064	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	32803064	32803064	A	C	SNP	TAP2	ENST00000374897	human	ensembl	74_37	-1	known	missense	c.812	p.L271R	0.134	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B3,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP2	HGNC	ENSG00000204267				70	0	0	44	20	31.25
RING1	0	genome.wustl.edu	37	6	33179049	33179049	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	33179049	33179049	C	T	SNP	RING1	ENST00000374656	human	ensembl	74_37	+1	known	silent	c.570	p.S190	0.020	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RING1	HGNC	ENSG00000204227				95	0	0	50	32	39.0244
VPS52	0	genome.wustl.edu	37	6	33232675	33232675	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	33232675	33232675	T	G	SNP	VPS52	ENST00000445902	human	ensembl	74_37	-1	known	missense	c.1284	p.K428N	0.998	pfam_Vps52	pfam_Vps52,pfam_Exocyst_Exoc1/SEC3	-	no_errors	VPS52	HGNC	ENSG00000223501				211	0	0	94	57	37.7483
TAPBP	0	genome.wustl.edu	37	6	33281127	33281127	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	33281127	33281127	C	T	SNP	TAPBP	ENST00000426633	human	ensembl	74_37	-1	known	silent	c.336	p.A112	0.152	NULL	pfam_Ig_C1-set,pfscan_Ig-like_dom,prints_Tapasin	-	no_errors	TAPBP	HGNC	ENSG00000231925				43	0	0	41	11	21.1538
SYNGAP1	0	genome.wustl.edu	37	6	33393628	33393628	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	33393628	33393628	G	A	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	silent	c.243	p.L81	1.000	smart_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				55	0	0	42	22	34.375
SYNGAP1	0	genome.wustl.edu	37	6	33405813	33405813	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	33405813	33405813	G	T	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	missense	c.1131	p.M377I	0.968	NULL	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				29	0	0	23	3	11.5385
SYNGAP1	0	genome.wustl.edu	37	6	33411374	33411374	+	Silent	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	33411374	33411374	T	G	SNP	SYNGAP1	ENST00000418600	human	ensembl	74_37	+1	known	silent	c.3045	p.T1015	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	SYNGAP1	HGNC	ENSG00000197283				353	0	0	291	64	18.0282
GRM4	0	genome.wustl.edu	37	6	34003743	34003743	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	34003743	34003743	C	G	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	missense	c.2144	p.C715S	0.996	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493				145	0	0	73	54	42.5197
GRM4	0	genome.wustl.edu	37	6	34004131	34004131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	34004131	34004131	G	A	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	missense	c.1756	p.P586S	0.993	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493				54	0	0	27	18	40
DEF6	0	genome.wustl.edu	37	6	35288973	35288973	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	35288973	35288973	C	T	SNP	DEF6	ENST00000316637	human	ensembl	74_37	+1	known	missense	c.1682	p.P561L	0.530	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DEF6	HGNC	ENSG00000023892				295	1	0.337838	260	19	6.81004
PPARD	0	genome.wustl.edu	37	6	35393806	35393806	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	35393806	35393806	G	A	SNP	PPARD	ENST00000311565	human	ensembl	74_37	+1	known	missense	c.1276	p.E426K	0.996	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_1Cnucl_rcpt_B,prints_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A	-	no_errors	PPARD	HGNC	ENSG00000112033				79	0	0	67	7	9.45946
C6orf222	0	genome.wustl.edu	37	6	36298298	36298298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	36298298	36298298	C	T	SNP	C6orf222	ENST00000437635	human	ensembl	74_37	-1	known	missense	c.170	p.R57K	0.000	NULL	NULL	-	no_errors	C6orf222	HGNC	ENSG00000189325				134	0	0	43	48	52.7473
SRSF3	0	genome.wustl.edu	37	6	36569517	36569517	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	36569517	36569517	C	T	SNP	SRSF3	ENST00000373715	human	ensembl	74_37	+1	known	missense	c.413	p.S138L	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF3	HGNC	ENSG00000112081				166	1	0.598802	106	57	34.9693
FGD2	0	genome.wustl.edu	37	6	36982426	36982426	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	36982426	36982426	C	A	SNP	FGD2	ENST00000274963	human	ensembl	74_37	+1	known	silent	c.828	p.A276	0.301	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Znf_FYVE,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD2	HGNC	ENSG00000146192				62	0	0	58	4	6.45161
TBC1D22B	0	genome.wustl.edu	37	6	37237385	37237385	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	37237385	37237385	T	C	SNP	TBC1D22B	ENST00000373491	human	ensembl	74_37	+1	known	silent	c.72	p.Y24	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491				45	0	0	28	14	33.3333
CMTR1	0	genome.wustl.edu	37	6	37403507	37403507	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	37403507	37403507	A	G	SNP	CMTR1	ENST00000373451	human	ensembl	74_37	+1	known	silent	c.102	p.E34	0.949	NULL	pfam_rRNA_MeTrfase_FtsJ_dom,pfam_G_patch_dom,smart_G_patch_dom,smart_WW_dom,pfscan_G_patch_dom	-	no_errors	CMTR1	HGNC	ENSG00000137200				62	0	0	33	31	48.4375
CMTR1	0	genome.wustl.edu	37	6	37418080	37418080	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	37418080	37418080	T	C	SNP	CMTR1	ENST00000373451	human	ensembl	74_37	+1	known	silent	c.498	p.P166	0.999	NULL	pfam_rRNA_MeTrfase_FtsJ_dom,pfam_G_patch_dom,smart_G_patch_dom,smart_WW_dom,pfscan_G_patch_dom	-	no_errors	CMTR1	HGNC	ENSG00000137200				69	0	0	30	29	49.1525
DNAH8	0	genome.wustl.edu	37	6	38704868	38704868	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	38704868	38704868	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.137	p.A46V	0.950	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				99	0	0	35	21	37.5
IRF4	0	genome.wustl.edu	37	6	394868	394868	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	394868	394868	G	A	SNP	IRF4	ENST00000380956	human	ensembl	74_37	+1	known	silent	c.264	p.P88	0.931	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF4	HGNC	ENSG00000137265				168	0	0	113	46	28.9308
PRPF4B	0	genome.wustl.edu	37	6	4041057	4041057	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	4041057	4041057	C	T	SNP	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	silent	c.1464	p.R488	0.180	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				73	0	0	44	27	38.0282
USP49	0	genome.wustl.edu	37	6	41773522	41773522	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	41773522	41773522	C	T	SNP	USP49	ENST00000373009	human	ensembl	74_37	-1	known	silent	c.1200	p.A400	0.213	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP49	HGNC	ENSG00000164663				58	0	0	27	30	52.6316
TRERF1	0	genome.wustl.edu	37	6	42211008	42211008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	42211008	42211008	G	A	SNP	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	missense	c.2897	p.A966V	0.120	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496				150	0	0	73	34	31.7757
TRERF1	0	genome.wustl.edu	37	6	42235905	42235905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	42235905	42235905	G	A	SNP	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	missense	c.1424	p.A475V	0.429	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496				82	0	0	48	34	41.4634
GLTSCR1L	0	genome.wustl.edu	37	6	42832398	42832398	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	42832398	42832398	G	T	SNP	GLTSCR1L	ENST00000314073	human	ensembl	74_37	+1	known	missense	c.2454	p.E818D	1.000	NULL	NULL	-	no_errors	GLTSCR1L	HGNC	ENSG00000112624				88	0	0	41	24	36.9231
PTK7	0	genome.wustl.edu	37	6	43109810	43109810	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	43109810	43109810	T	C	SNP	PTK7	ENST00000230419	human	ensembl	74_37	+1	known	missense	c.1910	p.L637P	0.997	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Immunoglobulin,pfam_Prot_kinase_dom,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK7	HGNC	ENSG00000112655				81	0	0	48	23	32.3944
SRF	0	genome.wustl.edu	37	6	43146121	43146121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	43146121	43146121	G	A	SNP	SRF	ENST00000265354	human	ensembl	74_37	+1	known	missense	c.1252	p.A418T	1.000	NULL	pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	SRF	HGNC	ENSG00000112658				109	0	0	40	29	42.029
ZNF318	0	genome.wustl.edu	37	6	43323652	43323652	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	43323652	43323652	G	A	SNP	ZNF318	ENST00000361428	human	ensembl	74_37	-1	known	silent	c.1420	p.L474	0.974	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467				173	0	0	92	56	37.8378
CAPN11	0	genome.wustl.edu	37	6	44143881	44143881	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	44143881	44143881	T	C	SNP	CAPN11	ENST00000398776	human	ensembl	74_37	+1	known	missense	c.908	p.L303P	0.007	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN11	HGNC	ENSG00000137225				46	0	0	18	11	37.931
CAPN11	0	genome.wustl.edu	37	6	44144341	44144341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	44144341	44144341	C	T	SNP	CAPN11	ENST00000398776	human	ensembl	74_37	+1	known	missense	c.1025	p.A342V	0.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN11	HGNC	ENSG00000137225				84	0	0	43	18	29.5082
CAPN11	0	genome.wustl.edu	37	6	44144696	44144696	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	44144696	44144696	C	T	SNP	CAPN11	ENST00000398776	human	ensembl	74_37	+1	known	missense	c.1198	p.R400C	0.999	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN11	HGNC	ENSG00000137225				180	0	0	152	13	7.87879
HSP90AB1	0	genome.wustl.edu	37	6	44218837	44218837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	44218837	44218837	G	A	SNP	HSP90AB1	ENST00000353801	human	ensembl	74_37	+1	known	missense	c.1010	p.R337H	1.000	pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90_fam	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384				183	0	0	80	52	39.3939
CLIC5	0	genome.wustl.edu	37	6	45882038	45882038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	45882038	45882038	C	T	SNP	CLIC5	ENST00000185206	human	ensembl	74_37	-1	known	missense	c.992	p.R331Q	0.943	superfamily_Glutathione-S-Trfase_C-like,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC5	HGNC	ENSG00000112782				91	0	0	79	20	20.202
PTCHD4	0	genome.wustl.edu	37	6	47976384	47976384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	47976384	47976384	G	A	SNP	PTCHD4	ENST00000339488	human	ensembl	74_37	-1	known	missense	c.893	p.P298L	1.000	pfam_Patched,pfscan_SSD	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD4	HGNC	ENSG00000244694				20	0	0	19	7	26.9231
DEFB112	0	genome.wustl.edu	37	6	50011439	50011439	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	50011439	50011439	T	C	SNP	DEFB112	ENST00000322246	human	ensembl	74_37	-1	known	missense	c.191	p.Q64R	0.000	NULL	NULL	-	no_errors	DEFB112	HGNC	ENSG00000180872				95	0	0	32	21	39.6226
TFAP2B	0	genome.wustl.edu	37	6	50810889	50810889	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	50810889	50810889	G	A	SNP	TFAP2B	ENST00000263046	human	ensembl	74_37	+1	known	silent	c.1194	p.P398	0.914	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196				144	0	0	149	17	10.241
GSTA1	0	genome.wustl.edu	37	6	52656537	52656537	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	52656537	52656537	A	G	SNP	GSTA1	ENST00000493331	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GSTA1	HGNC	ENSG00000243955				26	0	0	8	8	50
ICK	0	genome.wustl.edu	37	6	52870003	52870003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	52870003	52870003	C	T	SNP	ICK	ENST00000350082	human	ensembl	74_37	-1	known	missense	c.1843	p.A615T	0.993	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ICK	HGNC	ENSG00000112144				111	0	0	96	7	6.79612
FARS2	0	genome.wustl.edu	37	6	5404868	5404868	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	5404868	5404868	G	A	SNP	FARS2	ENST00000274680	human	ensembl	74_37	+1	known	missense	c.706	p.V236M	0.035	pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	pfam_Phenylalanyl-tRNA_Synthase,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd,pfscan_aa-tRNA-synth_II,tigrfam_Phe-tRNA-synth_IIc_mito	-	no_errors	FARS2	HGNC	ENSG00000145982				61	0	0	34	16	32
FAM83B	0	genome.wustl.edu	37	6	54735123	54735123	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	54735123	54735123	T	C	SNP	FAM83B	ENST00000306858	human	ensembl	74_37	+1	known	missense	c.79	p.W27R	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143				160	0	0	57	36	38.7097
COL21A1	0	genome.wustl.edu	37	6	55925815	55925815	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	55925815	55925815	A	G	SNP	COL21A1	ENST00000244728	human	ensembl	74_37	-1	known	silent	c.2226	p.P742	0.999	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL21A1	HGNC	ENSG00000124749				53	0	0	32	16	33.3333
COL21A1	0	genome.wustl.edu	37	6	56044553	56044553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	56044553	56044553	C	T	SNP	COL21A1	ENST00000244728	human	ensembl	74_37	-1	known	missense	c.463	p.A155T	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL21A1	HGNC	ENSG00000124749				48	0	0	26	7	21.2121
DST	0	genome.wustl.edu	37	6	56330968	56330968	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	56330968	56330968	A	G	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.22502	p.L7501P	1.000	pfam_GAS2_dom,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_GAS2_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				28	0	0	13	7	35
DST	0	genome.wustl.edu	37	6	56400091	56400091	+	Splice_Site	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	56400091	56400091	C	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	splice_site	c.16678-1	e63-1	1.000	-	-	-	no_errors	DST	HGNC	ENSG00000151914				51	0	0	29	17	36.9565
DST	0	genome.wustl.edu	37	6	56505385	56505385	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	56505385	56505385	G	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.1947	p.D649	1.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				87	0	0	53	4	7.01754
F13A1	0	genome.wustl.edu	37	6	6225036	6225036	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	6225036	6225036	A	G	SNP	F13A1	ENST00000264870	human	ensembl	74_37	-1	known	missense	c.856	p.Y286H	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491				114	0	0	60	55	47.8261
LY86-AS1	0	genome.wustl.edu	37	6	6347422	6347422	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	6347422	6347422	A	G	SNP	LY86-AS1	ENST00000429345	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LY86-AS1	HGNC	ENSG00000216863				9	0	0	6	8	57.1429
EXOC2	0	genome.wustl.edu	37	6	637811	637811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	637811	637811	C	T	SNP	EXOC2	ENST00000230449	human	ensembl	74_37	-1	known	missense	c.8	p.R3Q	0.976	NULL	pfam_IPT,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685				119	0	0	67	47	41.2281
LMBRD1	0	genome.wustl.edu	37	6	70428963	70428963	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	70428963	70428963	A	G	SNP	LMBRD1	ENST00000370577	human	ensembl	74_37	-1	known	missense	c.647	p.M216T	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216				26	0	0	14	11	44
FAM135A	0	genome.wustl.edu	37	6	71185436	71185436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	71185436	71185436	C	T	SNP	FAM135A	ENST00000418814	human	ensembl	74_37	+1	known	missense	c.368	p.S123L	1.000	pfam_DUF3657	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269				47	0	0	13	9	40.9091
RREB1	0	genome.wustl.edu	37	6	7230609	7230609	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	7230609	7230609	C	T	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	silent	c.2277	p.G759	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				48	0	0	47	36	43.3735
MB21D1	0	genome.wustl.edu	37	6	74138519	74138519	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	74138519	74138519	A	G	SNP	MB21D1	ENST00000370315	human	ensembl	74_37	-1	known	missense	c.1130	p.L377P	0.918	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MB21D1	HGNC	ENSG00000164430				52	0	0	23	7	23.3333
DSP	0	genome.wustl.edu	37	6	7579924	7579924	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	7579924	7579924	G	T	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	missense	c.3501	p.K1167N	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				51	0	0	33	11	25
SENP6	0	genome.wustl.edu	37	6	76405543	76405543	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	76405543	76405543	A	G	SNP	SENP6	ENST00000370014	human	ensembl	74_37	+1	known	missense	c.2099	p.K700R	1.000	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP6	HGNC	ENSG00000112701				150	0	0	40	20	33.3333
MYO6	0	genome.wustl.edu	37	6	76618318	76618318	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	76618318	76618318	G	A	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	missense	c.3416	p.R1139H	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				111	0	0	61	31	33.6957
DOPEY1	0	genome.wustl.edu	37	6	83839938	83839938	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	83839938	83839938	T	C	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.2438	p.L813P	0.994	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				51	0	0	31	9	22.5
DOPEY1	0	genome.wustl.edu	37	6	83839961	83839961	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	83839961	83839961	A	G	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.2461	p.T821A	1.000	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				50	0	0	33	11	25
CYB5R4	0	genome.wustl.edu	37	6	84603290	84603290	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	84603290	84603290	A	C	SNP	CYB5R4	ENST00000369681	human	ensembl	74_37	+1	known	missense	c.279	p.E93D	1.000	pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Cyt_B5-like_heme/steroid-bd	pfam_Cyt_B5-like_heme/steroid-bd,pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,pfam_CS_dom,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_Riboflavin_synthase-like_b-brl,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Cyt_B5-like_heme/steroid-bd,prints_NADH-Cyt_B5_reductase,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	CYB5R4	HGNC	ENSG00000065615				111	0	0	42	30	41.6667
KIAA1009	0	genome.wustl.edu	37	6	84834752	84834752	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	84834752	84834752	G	A	SNP	KIAA1009	ENST00000461137	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIAA1009	HGNC	ENSG00000135315				16	0	0	6	6	50
ZNF292	0	genome.wustl.edu	37	6	87970368	87970368	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	87970368	87970368	T	C	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	silent	c.7021	p.L2341	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				36	0	0	31	32	50.7937
ZNF292	0	genome.wustl.edu	37	6	87970811	87970811	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	87970811	87970811	T	C	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	silent	c.7464	p.F2488	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				35	0	0	11	12	52.1739
SMIM8	0	genome.wustl.edu	37	6	88046852	88046852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	88046852	88046852	C	T	SNP	SMIM8	ENST00000229570	human	ensembl	74_37	+1	known	missense	c.103	p.R35C	1.000	NULL	NULL	-	no_errors	SMIM8	HGNC	ENSG00000111850				118	0	0	35	40	53.3333
C6orf165	0	genome.wustl.edu	37	6	88173833	88173833	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	88173833	88173833	T	C	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	silent	c.1734	p.T578	0.000	NULL	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				56	0	0	21	20	48.7805
GABRR2	0	genome.wustl.edu	37	6	89978860	89978860	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	89978860	89978860	G	A	SNP	GABRR2	ENST00000602399	human	ensembl	74_37	-1	known	missense	c.457	p.R153W	0.986	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho2_rcpt,prints_GABAAa_rho_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRR2	HGNC	ENSG00000111886				158	0	0	88	50	36.2319
MDN1	0	genome.wustl.edu	37	6	90395561	90395561	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	90395561	90395561	G	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	nonsense	c.11704	p.Q3902*	0.989	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				49	0	0	19	11	36.6667
MDN1	0	genome.wustl.edu	37	6	90399785	90399785	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	90399785	90399785	G	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.10827	p.G3609	0.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				106	0	0	43	35	44.8718
MDN1	0	genome.wustl.edu	37	6	90438695	90438695	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	90438695	90438695	C	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.5304	p.K1768N	0.997	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				113	0	0	36	26	41.9355
BACH2	0	genome.wustl.edu	37	6	90660304	90660304	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	90660304	90660304	G	A	SNP	BACH2	ENST00000257749	human	ensembl	74_37	-1	known	silent	c.1521	p.C507	1.000	NULL	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182				87	0	0	44	29	39.726
FHL5	0	genome.wustl.edu	37	6	97052743	97052743	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	97052743	97052743	T	C	SNP	FHL5	ENST00000326771	human	ensembl	74_37	+1	known	missense	c.277	p.C93R	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL5	HGNC	ENSG00000112214				109	0	0	45	35	43.75
FAXC	0	genome.wustl.edu	37	6	99739596	99739596	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	99739596	99739596	G	T	SNP	FAXC	ENST00000389677	human	ensembl	74_37	-1	known	silent	c.924	p.P308	0.413	superfamily_Glutathione-S-Trfase_C-like	superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	FAXC	HGNC	ENSG00000146267				197	0	0	160	13	7.51445
PNISR	0	genome.wustl.edu	37	6	99849431	99849431	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	99849431	99849431	A	G	SNP	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	missense	c.1403	p.L468P	0.993	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				62	0	0	26	12	31.5789
LRCH4	0	genome.wustl.edu	37	7	100175504	100175504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100175504	100175504	C	T	SNP	LRCH4	ENST00000310300	human	ensembl	74_37	-1	known	missense	c.980	p.R327Q	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH4	HGNC	ENSG00000077454				65	0	0	71	6	7.79221
TFR2	0	genome.wustl.edu	37	7	100228630	100228630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100228630	100228630	G	A	SNP	TFR2	ENST00000431692	human	ensembl	74_37	-1	known	missense	c.895	p.P299S	0.163	NULL	NULL	-	no_errors	TFR2	HGNC	ENSG00000106327				10	0	0	28	6	17.6471
GIGYF1	0	genome.wustl.edu	37	7	100280085	100280085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100280085	100280085	G	A	SNP	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	missense	c.2621	p.S874L	0.882	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830				46	0	0	66	28	29.7872
GIGYF1	0	genome.wustl.edu	37	7	100283827	100283827	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100283827	100283827	G	T	SNP	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	silent	c.924	p.A308	0.959	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF1	HGNC	ENSG00000146830				82	0	0	80	6	6.97674
ZAN	0	genome.wustl.edu	37	7	100350373	100350373	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100350373	100350373	C	T	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	missense	c.2645	p.T882M	0.062	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				149	0	0	237	68	22.2951
EPHB4	0	genome.wustl.edu	37	7	100417381	100417381	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100417381	100417381	T	C	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	silent	c.1095	p.R365	0.012	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411				19	0	0	18	10	35.7143
SRRT	0	genome.wustl.edu	37	7	100482099	100482099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100482099	100482099	C	T	SNP	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	missense	c.868	p.R290W	0.883	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087				21	0	0	50	25	33.3333
VGF	0	genome.wustl.edu	37	7	100806877	100806877	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100806877	100806877	C	A	SNP	VGF	ENST00000249330	human	ensembl	74_37	-1	known	missense	c.1248	p.E416D	0.999	NULL	NULL	-	no_errors	VGF	HGNC	ENSG00000128564				11	0	0	18	5	21.7391
PLOD3	0	genome.wustl.edu	37	7	100859782	100859782	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100859782	100859782	T	C	SNP	PLOD3	ENST00000223127	human	ensembl	74_37	-1	known	missense	c.247	p.T83A	0.937	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397				89	0	0	90	5	5.26316
ZNHIT1	0	genome.wustl.edu	37	7	100867096	100867096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100867096	100867096	G	A	SNP	ZNHIT1	ENST00000305105	human	ensembl	74_37	+1	known	missense	c.416	p.R139H	1.000	pfam_Znf_HIT,pfscan_Znf_HIT	pfam_Znf_HIT,pfscan_Znf_HIT	-	no_errors	ZNHIT1	HGNC	ENSG00000106400				117	0	0	120	11	8.39695
LRWD1	0	genome.wustl.edu	37	7	102107885	102107885	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	102107885	102107885	C	A	SNP	LRWD1	ENST00000292616	human	ensembl	74_37	+1	known	missense	c.532	p.R178S	0.121	NULL	pfam_WD40_repeat,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LRWD1	HGNC	ENSG00000161036				45	0	0	46	18	28.125
LRRC17	0	genome.wustl.edu	37	7	102574541	102574541	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	102574541	102574541	C	A	SNP	LRRC17	ENST00000339431	human	ensembl	74_37	+1	known	missense	c.181	p.H61N	0.998	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606				61	0	0	59	10	14.4928
FBXL13	0	genome.wustl.edu	37	7	102669858	102669858	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	102669858	102669858	G	A	SNP	FBXL13	ENST00000313221	human	ensembl	74_37	-1	known	missense	c.8	p.P3L	1.000	NULL	smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL13	HGNC	ENSG00000161040				23	0	0	10	6	37.5
KMT2E	0	genome.wustl.edu	37	7	104752725	104752725	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	104752725	104752725	G	A	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.4522	p.A1508T	0.981	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				84	0	0	75	26	25.7426
SLC26A3	0	genome.wustl.edu	37	7	107417105	107417105	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	107417105	107417105	T	C	SNP	SLC26A3	ENST00000340010	human	ensembl	74_37	-1	known	missense	c.1561	p.K521E	1.000	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A3	HGNC	ENSG00000091138				41	0	0	32	3	8.57143
LAMB1	0	genome.wustl.edu	37	7	107642156	107642156	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	107642156	107642156	G	A	SNP	LAMB1	ENST00000222399	human	ensembl	74_37	-1	known	silent	c.60	p.R20	0.038	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,superfamily_P-loop_NTPase,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136				25	0	0	26	14	35
NRCAM	0	genome.wustl.edu	37	7	107880468	107880468	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	107880468	107880468	G	A	SNP	NRCAM	ENST00000379028	human	ensembl	74_37	-1	known	missense	c.41	p.A14V	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NRCAM	HGNC	ENSG00000091129				120	0	0	75	36	32.4324
GPR146	0	genome.wustl.edu	37	7	1097807	1097807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	1097807	1097807	C	T	SNP	GPR146	ENST00000297468	human	ensembl	74_37	+1	known	missense	c.656	p.P219L	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR146	HGNC	ENSG00000164849				17	0	0	18	12	40
LRRN3	0	genome.wustl.edu	37	7	110763397	110763397	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	110763397	110763397	T	C	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	missense	c.569	p.L190P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				114	0	0	64	21	24.7059
DOCK4	0	genome.wustl.edu	37	7	111368610	111368610	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	111368610	111368610	G	A	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	missense	c.5648	p.A1883V	0.001	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				73	0	0	80	43	34.9593
GPER1	0	genome.wustl.edu	37	7	1131797	1131797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	1131797	1131797	G	A	SNP	GPER1	ENST00000297469	human	ensembl	74_37	+1	known	missense	c.433	p.V145I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPER1	HGNC	ENSG00000164850				135	0	0	104	44	29.7297
MDFIC	0	genome.wustl.edu	37	7	114655773	114655773	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	114655773	114655773	G	A	SNP	MDFIC	ENST00000393486	human	ensembl	74_37	+1	known	silent	c.525	p.L175	1.000	NULL	NULL	-	no_errors	MDFIC	HGNC	ENSG00000135272				449	0	0	341	65	16.0099
THSD7A	0	genome.wustl.edu	37	7	11676578	11676578	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	11676578	11676578	G	A	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	silent	c.201	p.G67	0.683	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				117	1	0.847458	99	39	28.2609
CFTR	0	genome.wustl.edu	37	7	117199603	117199603	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	117199603	117199603	A	C	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	missense	c.1478	p.Q493P	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626				110	0	0	52	30	36.5854
THSD7A	0	genome.wustl.edu	37	7	11871469	11871469	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	11871469	11871469	A	G	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	missense	c.104	p.L35P	0.002	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				9	0	0	15	4	21.0526
KCND2	0	genome.wustl.edu	37	7	119915475	119915475	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	119915475	119915475	T	C	SNP	KCND2	ENST00000331113	human	ensembl	74_37	+1	known	silent	c.789	p.S263	0.992	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408				73	0	0	70	30	30
KCND2	0	genome.wustl.edu	37	7	119915782	119915782	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	119915782	119915782	G	A	SNP	KCND2	ENST00000331113	human	ensembl	74_37	+1	known	missense	c.1096	p.V366I	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408				94	0	0	72	22	23.4043
TSPAN12	0	genome.wustl.edu	37	7	120455811	120455811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	120455811	120455811	C	T	SNP	TSPAN12	ENST00000222747	human	ensembl	74_37	-1	known	missense	c.332	p.G111D	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN12	HGNC	ENSG00000106025				36	0	0	22	9	29.0323
RNF133	0	genome.wustl.edu	37	7	122338733	122338733	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	122338733	122338733	T	C	SNP	RNF133	ENST00000340112	human	ensembl	74_37	-1	known	silent	c.240	p.G80	0.926	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF133	HGNC	ENSG00000188050				154	1	0.645161	81	47	36.7188
ASB15	0	genome.wustl.edu	37	7	123269126	123269126	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	123269126	123269126	A	G	SNP	ASB15	ENST00000275699	human	ensembl	74_37	+1	known	missense	c.1078	p.N360D	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB15	HGNC	ENSG00000146809				129	0	0	73	27	27
HYAL4	0	genome.wustl.edu	37	7	123517154	123517154	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	123517154	123517154	C	A	SNP	HYAL4	ENST00000223026	human	ensembl	74_37	+1	known	nonsense	c.1391	p.S464*	0.002	pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL4	HGNC	ENSG00000106302				110	0	0	75	30	28.5714
GPR37	0	genome.wustl.edu	37	7	124387107	124387107	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	124387107	124387107	G	A	SNP	GPR37	ENST00000303921	human	ensembl	74_37	-1	known	silent	c.1314	p.Y438	0.488	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37	HGNC	ENSG00000170775				121	0	0	92	37	28.6822
RBM28	0	genome.wustl.edu	37	7	127950948	127950948	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	127950948	127950948	T	C	SNP	RBM28	ENST00000223073	human	ensembl	74_37	-1	known	missense	c.2182	p.T728A	0.258	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM28	HGNC	ENSG00000106344				96	0	0	84	35	29.4118
FAM71F1	0	genome.wustl.edu	37	7	128356940	128356940	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	128356940	128356940	T	C	SNP	FAM71F1	ENST00000315184	human	ensembl	74_37	+1	known	missense	c.323	p.V108A	0.997	NULL	pfam_DUF3699	-	no_errors	FAM71F1	HGNC	ENSG00000135248				49	0	0	54	9	14.2857
CCDC136	0	genome.wustl.edu	37	7	128441353	128441353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	128441353	128441353	C	T	SNP	CCDC136	ENST00000297788	human	ensembl	74_37	+1	known	missense	c.460	p.R154W	1.000	NULL	NULL	-	no_errors	CCDC136	HGNC	ENSG00000128596				33	0	0	43	12	21.8182
FLNC	0	genome.wustl.edu	37	7	128484941	128484941	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	128484941	128484941	C	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.3422	p.P1141H	1.000	pfam_Filamin/ABP280_repeat-like,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				128	0	0	109	37	25.3425
IRF5	0	genome.wustl.edu	37	7	128587396	128587396	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	128587396	128587396	C	T	SNP	IRF5	ENST00000357234	human	ensembl	74_37	+1	known	silent	c.594	p.P198	0.000	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF5	HGNC	ENSG00000128604				27	0	0	21	12	36.3636
SMO	0	genome.wustl.edu	37	7	128845470	128845470	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	128845470	128845470	G	A	SNP	SMO	ENST00000249373	human	ensembl	74_37	+1	known	nonsense	c.767	p.W256*	1.000	pfam_Frizzled,pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602				155	0	0	136	57	29.5337
STRIP2	0	genome.wustl.edu	37	7	129096388	129096388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	129096388	129096388	C	T	SNP	STRIP2	ENST00000249344	human	ensembl	74_37	+1	known	missense	c.943	p.R315C	1.000	pfam_N1221	pfam_DUF3402,pfam_N1221	-	no_errors	STRIP2	HGNC	ENSG00000128578				90	0	0	112	38	25.3333
CPA1	0	genome.wustl.edu	37	7	130025744	130025744	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	130025744	130025744	G	A	SNP	CPA1	ENST00000011292	human	ensembl	74_37	+1	known	missense	c.1052	p.G351D	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704				37	0	0	26	11	29.7297
PODXL	0	genome.wustl.edu	37	7	131189178	131189178	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	131189178	131189178	C	A	SNP	PODXL	ENST00000541194	human	ensembl	74_37	-1	known	missense	c.1575	p.Q525H	1.000	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567				147	0	0	104	27	20.6107
PODXL	0	genome.wustl.edu	37	7	131195724	131195724	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	131195724	131195724	C	T	SNP	PODXL	ENST00000541194	human	ensembl	74_37	-1	known	missense	c.575	p.R192Q	0.000	pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567				121	0	0	108	42	28
PLXNA4	0	genome.wustl.edu	37	7	131887472	131887472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	131887472	131887472	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.2519	p.A840V	0.571	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				60	0	0	51	19	27.1429
PLXNA4	0	genome.wustl.edu	37	7	132174163	132174163	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	132174163	132174163	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.1259	p.R420H	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				62	0	0	36	7	16.2791
BPGM	0	genome.wustl.edu	37	7	134346399	134346399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	134346399	134346399	C	T	SNP	BPGM	ENST00000344924	human	ensembl	74_37	+1	known	missense	c.140	p.A47V	0.994	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	BPGM	HGNC	ENSG00000172331				63	0	0	50	27	35.0649
CALD1	0	genome.wustl.edu	37	7	134625972	134625972	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	134625972	134625972	A	G	SNP	CALD1	ENST00000361388	human	ensembl	74_37	+1	known	missense	c.829	p.T277A	0.200	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786				61	0	0	46	12	20.6897
TMEM140	0	genome.wustl.edu	37	7	134849267	134849267	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	134849267	134849267	T	C	SNP	TMEM140	ENST00000275767	human	ensembl	74_37	+1	known	missense	c.74	p.I25T	0.110	NULL	NULL	-	no_errors	TMEM140	HGNC	ENSG00000146859				127	0	0	113	43	27.5641
NUP205	0	genome.wustl.edu	37	7	135333151	135333151	+	Splice_Site	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	135333151	135333151	G	A	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	splice_site	c.5887-1	e43-1	1.000	-	-	-	no_errors	NUP205	HGNC	ENSG00000155561				70	0	0	51	14	21.5385
SLC13A4	0	genome.wustl.edu	37	7	135370392	135370392	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	135370392	135370392	A	G	SNP	SLC13A4	ENST00000354042	human	ensembl	74_37	-1	known	missense	c.1483	p.S495P	1.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707				226	1	0.440529	169	54	24.2152
AKR1D1	0	genome.wustl.edu	37	7	137790156	137790156	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	137790156	137790156	A	G	SNP	AKR1D1	ENST00000242375	human	ensembl	74_37	+1	known	missense	c.560	p.H187R	0.963	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1D1	HGNC	ENSG00000122787				193	0	0	222	73	24.7458
ZC3HAV1	0	genome.wustl.edu	37	7	138768595	138768595	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	138768595	138768595	C	T	SNP	ZC3HAV1	ENST00000242351	human	ensembl	74_37	-1	known	missense	c.628	p.D210N	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	ZC3HAV1	HGNC	ENSG00000105939				62	0	0	68	22	24.4444
KLRG2	0	genome.wustl.edu	37	7	139168208	139168208	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	139168208	139168208	C	A	SNP	KLRG2	ENST00000340940	human	ensembl	74_37	-1	known	missense	c.181	p.G61C	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRG2	HGNC	ENSG00000188883				27	0	0	39	5	11.3636
HIPK2	0	genome.wustl.edu	37	7	139416624	139416624	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	139416624	139416624	G	T	SNP	HIPK2	ENST00000406875	human	ensembl	74_37	-1	known	silent	c.210	p.S70	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393				43	0	0	46	16	25.8065
TBXAS1	0	genome.wustl.edu	37	7	139719836	139719836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	139719836	139719836	G	A	SNP	TBXAS1	ENST00000414508	human	ensembl	74_37	+1	known	missense	c.1379	p.S460N	1.000	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	TBXAS1	HGNC	ENSG00000059377				62	0	0	53	20	27.3973
PARP12	0	genome.wustl.edu	37	7	139741630	139741630	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	139741630	139741630	G	T	SNP	PARP12	ENST00000263549	human	ensembl	74_37	-1	known	nonsense	c.996	p.C332*	0.000	pfscan_WWE-dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Znf_CCCH,smart_Znf_CCCH,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP12	HGNC	ENSG00000059378				127	0	0	109	41	27.3333
DENND2A	0	genome.wustl.edu	37	7	140221778	140221778	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	140221778	140221778	G	A	SNP	DENND2A	ENST00000275884	human	ensembl	74_37	-1	known	missense	c.2788	p.R930W	1.000	pfam_dDENN_dom,smart_dDENN_dom,pfscan_dDENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966				73	0	0	57	36	38.7097
DENND2A	0	genome.wustl.edu	37	7	140285507	140285507	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	140285507	140285507	G	A	SNP	DENND2A	ENST00000275884	human	ensembl	74_37	-1	known	missense	c.1127	p.P376L	0.996	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966				135	0	0	108	39	26.5306
MGAM	0	genome.wustl.edu	37	7	141754637	141754637	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	141754637	141754637	A	G	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	silent	c.3243	p.Q1081	0.002	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				165	0	0	125	54	30.1676
PRSS3P2	0	genome.wustl.edu	37	7	142480049	142480049	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	142480049	142480049	G	A	SNP	PRSS3P2	ENST00000603901	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRSS3P2	HGNC	ENSG00000250606				138	1	0.719424	132	33	20
TRPV6	0	genome.wustl.edu	37	7	142574967	142574967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	142574967	142574967	G	A	SNP	TRPV6	ENST00000359396	human	ensembl	74_37	-1	known	missense	c.415	p.R139C	0.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125				123	0	0	116	32	21.6216
EPHA1	0	genome.wustl.edu	37	7	143097047	143097047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	143097047	143097047	G	A	SNP	EPHA1	ENST00000275815	human	ensembl	74_37	-1	known	missense	c.532	p.R178C	0.026	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904				32	0	0	30	21	41.1765
FAM115A	0	genome.wustl.edu	37	7	143573685	143573685	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	143573685	143573685	G	A	SNP	FAM115A	ENST00000479870	human	ensembl	74_37	-1	known	missense	c.17	p.A6V	1.000	NULL	NULL	-	no_errors	FAM115A	HGNC	ENSG00000198420				85	0	0	60	34	36.1702
OR2A25	0	genome.wustl.edu	37	7	143771510	143771510	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	143771510	143771510	G	A	SNP	OR2A25	ENST00000408898	human	ensembl	74_37	+1	known	silent	c.198	p.A66	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A25	HGNC	ENSG00000221933				115	0	0	109	36	24.8276
OR2A12	0	genome.wustl.edu	37	7	143793059	143793059	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	143793059	143793059	C	A	SNP	OR2A12	ENST00000408949	human	ensembl	74_37	+1	known	missense	c.859	p.L287I	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A12	HGNC	ENSG00000221858				388	0	0	289	98	25.323
CNTNAP2	0	genome.wustl.edu	37	7	148112638	148112638	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	148112638	148112638	C	G	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.3926	p.A1309G	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				79	0	0	69	27	28.125
CUL1	0	genome.wustl.edu	37	7	148451198	148451198	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	148451198	148451198	C	T	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	nonsense	c.271	p.R91*	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				26	0	0	29	3	9.375
ZNF786	0	genome.wustl.edu	37	7	148769470	148769470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	148769470	148769470	G	A	SNP	ZNF786	ENST00000491431	human	ensembl	74_37	-1	known	missense	c.394	p.P132S	0.015	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362				27	0	0	25	11	30.5556
MICALL2	0	genome.wustl.edu	37	7	1488346	1488346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	1488346	1488346	C	T	SNP	MICALL2	ENST00000297508	human	ensembl	74_37	-1	known	missense	c.244	p.E82K	0.996	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL2	HGNC	ENSG00000164877				138	0	0	160	50	23.8095
ZNF783	0	genome.wustl.edu	37	7	148979127	148979127	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	148979127	148979127	T	C	SNP	ZNF783	ENST00000434415	human	ensembl	74_37	+1	known	missense	c.1334	p.F445S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF783	HGNC	ENSG00000204946				15	0	0	31	9	22.5
ZNF783	0	genome.wustl.edu	37	7	148979206	148979206	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	148979206	148979206	C	T	SNP	ZNF783	ENST00000434415	human	ensembl	74_37	+1	known	silent	c.1413	p.C471	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF783	HGNC	ENSG00000204946				42	0	0	41	13	24.0741
SSPO	0	genome.wustl.edu	37	7	149477454	149477454	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	149477454	149477454	C	T	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				18	0	0	17	9	34.6154
SSPO	0	genome.wustl.edu	37	7	149497409	149497409	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	149497409	149497409	G	A	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				16	0	0	16	9	36
SSPO	0	genome.wustl.edu	37	7	149500066	149500066	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	149500066	149500066	G	T	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				10	0	0	14	8	36.3636
REPIN1	0	genome.wustl.edu	37	7	150069776	150069776	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150069776	150069776	C	T	SNP	REPIN1	ENST00000489432	human	ensembl	74_37	+1	known	silent	c.1617	p.T539	0.972	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REPIN1	HGNC	ENSG00000214022				75	0	0	90	37	29.1339
TMEM176B	0	genome.wustl.edu	37	7	150493585	150493585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150493585	150493585	C	T	SNP	TMEM176B	ENST00000326442	human	ensembl	74_37	-1	known	missense	c.73	p.V25I	0.568	NULL	pfam_CD20-like,superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM176B	HGNC	ENSG00000106565				81	0	0	75	4	5.06329
AOC1	0	genome.wustl.edu	37	7	150554719	150554719	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150554719	150554719	C	T	SNP	AOC1	ENST00000416793	human	ensembl	74_37	+1	known	silent	c.1161	p.P387	0.487	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC1	HGNC	ENSG00000002726				135	0	0	153	41	21.134
AOC1	0	genome.wustl.edu	37	7	150555029	150555029	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150555029	150555029	A	G	SNP	AOC1	ENST00000416793	human	ensembl	74_37	+1	known	missense	c.1471	p.T491A	1.000	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC1	HGNC	ENSG00000002726				98	0	0	88	28	24.1379
AOC1	0	genome.wustl.edu	37	7	150558050	150558050	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150558050	150558050	C	T	SNP	AOC1	ENST00000416793	human	ensembl	74_37	+1	known	missense	c.2066	p.T689M	1.000	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC1	HGNC	ENSG00000002726				87	0	0	85	23	21.2963
KCNH2	0	genome.wustl.edu	37	7	150656686	150656686	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150656686	150656686	C	G	SNP	KCNH2	ENST00000262186	human	ensembl	74_37	-1	known	missense	c.446	p.G149A	0.016	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118				82	0	0	72	20	21.7391
KCNH2	0	genome.wustl.edu	37	7	150674958	150674958	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150674958	150674958	A	G	SNP	KCNH2	ENST00000262186	human	ensembl	74_37	-1	known	missense	c.44	p.L15P	1.000	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118				25	0	0	23	6	20.6897
ATG9B	0	genome.wustl.edu	37	7	150721263	150721263	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150721263	150721263	G	A	SNP	ATG9B	ENST00000377974	human	ensembl	74_37	-1	known	missense	c.248	p.A83V	0.359	NULL	pfam_Autophagy-rel_prot_9	-	no_errors	ATG9B	HGNC	ENSG00000181652				27	0	0	21	7	25
ABCB8	0	genome.wustl.edu	37	7	150737962	150737962	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150737962	150737962	C	T	SNP	ABCB8	ENST00000297504	human	ensembl	74_37	+1	known	missense	c.1487	p.T496M	0.943	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB8	HGNC	ENSG00000197150				22	0	0	20	7	25.9259
ASIC3	0	genome.wustl.edu	37	7	150749682	150749682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150749682	150749682	C	T	SNP	ASIC3	ENST00000297512	human	ensembl	74_37	+1	known	missense	c.1559	p.P520L	0.096	NULL	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC3	HGNC	ENSG00000213199				124	0	0	161	9	5.29412
SLC4A2	0	genome.wustl.edu	37	7	150761736	150761736	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150761736	150761736	C	A	SNP	SLC4A2	ENST00000413384	human	ensembl	74_37	+1	known	missense	c.341	p.P114Q	0.985	NULL	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889				54	0	0	69	26	27.3684
SLC4A2	0	genome.wustl.edu	37	7	150771106	150771106	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150771106	150771106	G	A	SNP	SLC4A2	ENST00000482697	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC4A2	HGNC	ENSG00000164889				82	0	0	77	39	33.6207
FASTK	0	genome.wustl.edu	37	7	150775020	150775020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150775020	150775020	G	A	SNP	FASTK	ENST00000297532	human	ensembl	74_37	-1	known	missense	c.985	p.P329S	1.000	pfam_FAST_Leu-rich	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTK	HGNC	ENSG00000164896				129	0	0	97	27	21.7742
FASTK	0	genome.wustl.edu	37	7	150775740	150775740	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150775740	150775740	T	C	SNP	FASTK	ENST00000297532	human	ensembl	74_37	-1	known	missense	c.734	p.Q245R	1.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTK	HGNC	ENSG00000164896				42	0	0	41	21	33.871
FASTK	0	genome.wustl.edu	37	7	150776883	150776883	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150776883	150776883	T	C	SNP	FASTK	ENST00000297532	human	ensembl	74_37	-1	known	missense	c.209	p.D70G	1.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTK	HGNC	ENSG00000164896				17	0	0	22	7	24.1379
AGAP3	0	genome.wustl.edu	37	7	150839592	150839592	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150839592	150839592	G	A	SNP	AGAP3	ENST00000397238	human	ensembl	74_37	+1	known	missense	c.2144	p.R715H	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP3	HGNC	ENSG00000133612				87	0	0	72	24	25
ASB10	0	genome.wustl.edu	37	7	150873338	150873338	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150873338	150873338	G	T	SNP	ASB10	ENST00000422024	human	ensembl	74_37	-1	known	missense	c.1400	p.P467H	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB10	HGNC	ENSG00000146926				56	0	0	54	5	8.47458
SMARCD3	0	genome.wustl.edu	37	7	150937242	150937242	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	150937242	150937242	G	A	SNP	SMARCD3	ENST00000262188	human	ensembl	74_37	-1	known	silent	c.1129	p.L377	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD3	HGNC	ENSG00000082014				86	0	0	61	26	29.8851
WDR86	0	genome.wustl.edu	37	7	151093046	151093046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	151093046	151093046	G	A	SNP	WDR86	ENST00000477459	human	ensembl	74_37	-1	known	missense	c.158	p.A53V	1.000	superfamily_Quinonprotein_ADH-like_supfam,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR86	HGNC	ENSG00000187260				15	0	0	14	3	17.6471
DPP6	0	genome.wustl.edu	37	7	154561143	154561143	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	154561143	154561143	A	G	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	silent	c.900	p.T300	0.930	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				82	0	0	48	15	23.8095
DPP6	0	genome.wustl.edu	37	7	154595578	154595578	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	154595578	154595578	A	G	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	missense	c.1412	p.N471S	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				37	0	0	43	10	18.8679
PAXIP1	0	genome.wustl.edu	37	7	154738222	154738222	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	154738222	154738222	C	A	SNP	PAXIP1	ENST00000397192	human	ensembl	74_37	-1	known	missense	c.3133	p.D1045Y	1.000	smart_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212				70	0	0	72	4	5.26316
HTR5A	0	genome.wustl.edu	37	7	154876139	154876139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	154876139	154876139	C	T	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	missense	c.1016	p.T339M	1.000	prints_GPCR_Rhodpsn,prints_5HT_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219				168	0	0	168	9	5.08475
ENSG00000224903	0	genome.wustl.edu	37	7	156447220	156447220	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	156447220	156447220	C	T	SNP	ENSG00000224903	ENST00000455709	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC005534.8	Clone_based_vega_gene	ENSG00000224903				27	0	0	23	11	32.3529
RNF32	0	genome.wustl.edu	37	7	156451251	156451251	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	156451251	156451251	T	C	SNP	RNF32	ENST00000317955	human	ensembl	74_37	+1	known	missense	c.671	p.F224S	1.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_IQ_motif_EF-hand-BS,pfscan_Znf_RING	-	no_errors	RNF32	HGNC	ENSG00000105982				57	0	0	37	20	35.0877
ANKMY2	0	genome.wustl.edu	37	7	16685330	16685330	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	16685330	16685330	G	A	SNP	ANKMY2	ENST00000421746	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKMY2	HGNC	ENSG00000106524				30	0	0	27	2	6.89655
HDAC9	0	genome.wustl.edu	37	7	18625006	18625006	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	18625006	18625006	G	A	SNP	HDAC9	ENST00000441542	human	ensembl	74_37	+1	known	missense	c.125	p.R42H	1.000	pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052				115	0	0	70	31	30.6931
SP8	0	genome.wustl.edu	37	7	20824196	20824196	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	20824196	20824196	G	A	SNP	SP8	ENST00000418710	human	ensembl	74_37	-1	known	missense	c.1240	p.R414C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Antifreeze_1	-	no_errors	SP8	HGNC	ENSG00000164651				13	0	0	28	10	26.3158
DNAH11	0	genome.wustl.edu	37	7	21657286	21657286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	21657286	21657286	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.4160	p.G1387D	0.988	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				27	0	0	37	19	33.9286
DNAH11	0	genome.wustl.edu	37	7	21742330	21742330	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	21742330	21742330	T	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.6204	p.D2068E	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				33	0	0	16	8	33.3333
CDCA7L	0	genome.wustl.edu	37	7	21945971	21945971	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	21945971	21945971	A	G	SNP	CDCA7L	ENST00000406877	human	ensembl	74_37	-1	known	missense	c.857	p.F286S	1.000	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7L	HGNC	ENSG00000164649				194	0	0	176	12	6.38298
SNX8	0	genome.wustl.edu	37	7	2297144	2297144	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	2297144	2297144	C	T	SNP	SNX8	ENST00000222990	human	ensembl	74_37	-1	known	silent	c.990	p.L330	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX8	HGNC	ENSG00000106266				32	0	0	28	8	22.2222
SNX8	0	genome.wustl.edu	37	7	2311527	2311527	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	2311527	2311527	G	A	SNP	SNX8	ENST00000222990	human	ensembl	74_37	-1	known	silent	c.498	p.S166	0.235	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX8	HGNC	ENSG00000106266				36	0	0	23	9	28.125
FAM221A	0	genome.wustl.edu	37	7	23729040	23729040	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	23729040	23729040	A	T	SNP	FAM221A	ENST00000344962	human	ensembl	74_37	+1	known	missense	c.392	p.D131V	0.998	NULL	NULL	-	no_errors	FAM221A	HGNC	ENSG00000188732				75	0	0	54	18	25
BRAT1	0	genome.wustl.edu	37	7	2583333	2583333	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	2583333	2583333	A	G	SNP	BRAT1	ENST00000340611	human	ensembl	74_37	-1	known	missense	c.694	p.W232R	0.984	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	BRAT1	HGNC	ENSG00000106009				73	0	0	102	30	22.7273
TTYH3	0	genome.wustl.edu	37	7	2687708	2687708	+	RNA	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	2687708	2687708	C	G	SNP	TTYH3	ENST00000477439	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTYH3	HGNC	ENSG00000136295				45	0	0	52	15	22.3881
TRIL	0	genome.wustl.edu	37	7	28997640	28997640	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	28997640	28997640	C	T	SNP	TRIL	ENST00000322982	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	TRIL	HGNC	ENSG00000176734				19	0	0	23	11	32.3529
CARD11	0	genome.wustl.edu	37	7	2974165	2974165	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	2974165	2974165	C	T	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	silent	c.1440	p.S480	0.001	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				48	0	0	49	13	20.9677
CARD11	0	genome.wustl.edu	37	7	2985499	2985499	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	2985499	2985499	T	C	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	silent	c.312	p.K104	0.644	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				230	0	0	251	85	25.2976
PLEKHA8	0	genome.wustl.edu	37	7	30094482	30094482	+	Splice_Site	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	30094482	30094482	G	A	SNP	PLEKHA8	ENST00000449726	human	ensembl	74_37	+1	known	splice_site	c.953+1	e8+1	1.000	-	-	-	no_errors	PLEKHA8	HGNC	ENSG00000106086				120	1	0.826446	68	21	23.5955
INMT	0	genome.wustl.edu	37	7	30795070	30795070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	30795070	30795070	G	A	SNP	INMT	ENST00000013222	human	ensembl	74_37	+1	known	missense	c.395	p.R132Q	0.942	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	INMT	HGNC	ENSG00000241644				46	0	0	48	9	15.7895
FAM188B	0	genome.wustl.edu	37	7	30825421	30825421	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	30825421	30825421	C	T	SNP	FAM188B	ENST00000265299	human	ensembl	74_37	+1	known	missense	c.476	p.P159L	0.003	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125				144	0	0	92	37	28.6822
FAM188B	0	genome.wustl.edu	37	7	30921938	30921938	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	30921938	30921938	G	A	SNP	FAM188B	ENST00000265299	human	ensembl	74_37	+1	known	missense	c.2114	p.G705D	1.000	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125				47	0	0	52	4	7.14286
PDE1C	0	genome.wustl.edu	37	7	31918629	31918629	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	31918629	31918629	C	A	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	missense	c.405	p.Q135H	1.000	pfam_PDEase_N	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678				127	0	0	135	21	13.4615
BMPER	0	genome.wustl.edu	37	7	34097736	34097736	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	34097736	34097736	T	C	SNP	BMPER	ENST00000297161	human	ensembl	74_37	+1	known	silent	c.993	p.C331	1.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619				66	0	0	43	22	33.8462
BMPER	0	genome.wustl.edu	37	7	34118552	34118552	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	34118552	34118552	T	C	SNP	BMPER	ENST00000297161	human	ensembl	74_37	+1	known	missense	c.1162	p.Y388H	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619				141	0	0	112	60	34.8837
DPY19L2P1	0	genome.wustl.edu	37	7	35131480	35131480	+	RNA	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	35131480	35131480	A	T	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				60	0	0	60	4	6.25
EEPD1	0	genome.wustl.edu	37	7	36194750	36194750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	36194750	36194750	G	A	SNP	EEPD1	ENST00000242108	human	ensembl	74_37	+1	known	missense	c.817	p.V273M	0.018	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_HhH_motif,pfam_Endo/exonuclease/phosphatase,pfam_GspK,superfamily_Endo/exonuclease/phosphatase,superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_DNA-bd_motif,tigrfam_Competence_ComEA_HhH	-	no_errors	EEPD1	HGNC	ENSG00000122547				46	0	0	52	10	16.129
POU6F2	0	genome.wustl.edu	37	7	39500290	39500290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	39500290	39500290	C	T	SNP	POU6F2	ENST00000403058	human	ensembl	74_37	+1	known	missense	c.1547	p.A516V	1.000	pfam_POU_specific,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,pfscan_POU_specific	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536				18	0	0	19	5	20.8333
POU6F2	0	genome.wustl.edu	37	7	39504019	39504019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	39504019	39504019	C	T	SNP	POU6F2	ENST00000403058	human	ensembl	74_37	+1	known	missense	c.1810	p.P604S	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536				48	0	0	54	5	8.47458
CDK13	0	genome.wustl.edu	37	7	40134449	40134449	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	40134449	40134449	C	T	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	missense	c.4409	p.P1470L	0.990	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				75	0	0	62	36	36.7347
SDK1	0	genome.wustl.edu	37	7	4153057	4153057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	4153057	4153057	C	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.3571	p.R1191W	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				189	0	0	202	42	17.2131
SDK1	0	genome.wustl.edu	37	7	4169577	4169577	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	4169577	4169577	G	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.3977	p.R1326M	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				70	0	0	89	24	21.2389
GLI3	0	genome.wustl.edu	37	7	42018275	42018275	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	42018275	42018275	G	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	nonsense	c.1570	p.Q524*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				102	0	0	71	4	5.33333
COA1	0	genome.wustl.edu	37	7	43687183	43687183	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	43687183	43687183	G	A	SNP	COA1	ENST00000223336	human	ensembl	74_37	-1	known	silent	c.66	p.H22	0.000	NULL	NULL	-	no_errors	COA1	HGNC	ENSG00000106603				68	0	0	70	34	32.6923
URGCP	0	genome.wustl.edu	37	7	43916483	43916483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	43916483	43916483	C	T	SNP	URGCP	ENST00000453200	human	ensembl	74_37	-1	known	missense	c.2579	p.R860Q	0.855	NULL	superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608				66	0	0	48	23	32.3944
LINC00957	0	genome.wustl.edu	37	7	44078881	44078881	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	44078881	44078881	A	G	SNP	LINC00957	ENST00000416824	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.111	-	-	-	no_errors	LINC00957	HGNC	ENSG00000235314				8	0	0	17	8	32
DBNL	0	genome.wustl.edu	37	7	44100420	44100420	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	44100420	44100420	G	T	SNP	DBNL	ENST00000468694	human	ensembl	74_37	+1	known	missense	c.1225	p.G409C	0.931	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Actin-bd_cofilin/tropomyosin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Actin-bd_cofilin/tropomyosin,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DBNL	HGNC	ENSG00000136279				67	0	0	54	20	27.027
AEBP1	0	genome.wustl.edu	37	7	44150385	44150385	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	44150385	44150385	T	C	SNP	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	missense	c.1462	p.Y488H	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				161	1	0.617284	164	61	27.1111
AEBP1	0	genome.wustl.edu	37	7	44151520	44151520	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	44151520	44151520	G	A	SNP	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	silent	c.1908	p.L636	0.662	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				39	0	0	40	17	29.8246
NPC1L1	0	genome.wustl.edu	37	7	44579394	44579394	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	44579394	44579394	C	T	SNP	NPC1L1	ENST00000289547	human	ensembl	74_37	-1	known	missense	c.602	p.R201H	1.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520				99	0	0	133	10	6.99301
DDX56	0	genome.wustl.edu	37	7	44612258	44612258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	44612258	44612258	G	A	SNP	DDX56	ENST00000258772	human	ensembl	74_37	-1	known	missense	c.469	p.R157C	0.841	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX56	HGNC	ENSG00000136271				172	0	0	134	46	25.5556
OGDH	0	genome.wustl.edu	37	7	44736535	44736535	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	44736535	44736535	T	C	SNP	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	silent	c.1923	p.T641	0.001	pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953				33	0	0	22	11	33.3333
OGDH	0	genome.wustl.edu	37	7	44737841	44737841	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	44737841	44737841	C	T	SNP	OGDH	ENST00000222673	human	ensembl	74_37	+1	known	silent	c.2409	p.N803	0.608	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDH	HGNC	ENSG00000105953				68	0	0	48	10	17.2414
PURB	0	genome.wustl.edu	37	7	44924609	44924609	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	44924609	44924609	G	A	SNP	PURB	ENST00000395699	human	ensembl	74_37	-1	known	silent	c.339	p.G113	1.000	pfam_PUR_DNA_RNA-bd	pfam_PUR_DNA_RNA-bd,smart_PUR_DNA_RNA-bd	-	no_errors	PURB	HGNC	ENSG00000146676				15	0	0	17	5	22.7273
TBRG4	0	genome.wustl.edu	37	7	45142092	45142092	+	Splice_Site	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	45142092	45142092	T	C	SNP	TBRG4	ENST00000258770	human	ensembl	74_37	-1	known	splice_site	c.1177-2	e6-2	1.000	-	-	-	no_errors	TBRG4	HGNC	ENSG00000136270				74	0	0	66	38	36.5385
ADCY1	0	genome.wustl.edu	37	7	45614583	45614583	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	45614583	45614583	G	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	silent	c.441	p.R147	0.016	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				33	0	0	42	10	19.2308
ADCY1	0	genome.wustl.edu	37	7	45753551	45753551	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	45753551	45753551	C	A	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	missense	c.3317	p.P1106Q	0.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				77	0	0	55	28	33.7349
IGFBP1	0	genome.wustl.edu	37	7	45928278	45928278	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	45928278	45928278	C	T	SNP	IGFBP1	ENST00000275525	human	ensembl	74_37	+1	known	silent	c.27	p.V9	0.110	NULL	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP1	-	no_errors	IGFBP1	HGNC	ENSG00000146678				24	0	0	33	13	28.2609
TNS3	0	genome.wustl.edu	37	7	47408456	47408456	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	47408456	47408456	A	G	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.1787	p.V596A	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				94	0	0	93	32	25.6
TNS3	0	genome.wustl.edu	37	7	47408585	47408585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	47408585	47408585	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.1658	p.R553Q	0.064	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				95	0	0	81	34	29.5652
TNS3	0	genome.wustl.edu	37	7	47409215	47409215	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	47409215	47409215	A	G	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.1028	p.L343P	0.976	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				37	0	0	50	13	20.6349
TNS3	0	genome.wustl.edu	37	7	47440452	47440452	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	47440452	47440452	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	silent	c.783	p.Q261	1.000	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				87	0	0	86	29	25.2174
TNS3	0	genome.wustl.edu	37	7	47467920	47467920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	47467920	47467920	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.379	p.V127I	0.984	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				90	0	0	85	8	8.60215
C7orf65	0	genome.wustl.edu	37	7	47694914	47694914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	47694914	47694914	G	A	SNP	C7orf65	ENST00000408988	human	ensembl	74_37	+1	putative	missense	c.38	p.R13Q	0.000	NULL	NULL	-	no_errors	C7orf65	HGNC	ENSG00000221845				42	0	0	59	18	23.3766
PKD1L1	0	genome.wustl.edu	37	7	47840378	47840378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	47840378	47840378	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	missense	c.8062	p.G2688R	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				129	0	0	98	42	30
PKD1L1	0	genome.wustl.edu	37	7	47944043	47944043	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	47944043	47944043	G	T	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	silent	c.1863	p.A621	0.164	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				82	0	0	46	17	26.9841
PKD1L1	0	genome.wustl.edu	37	7	47968882	47968882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	47968882	47968882	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	missense	c.979	p.G327R	0.494	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				215	0	0	186	77	29.2776
AP5Z1	0	genome.wustl.edu	37	7	4823046	4823046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	4823046	4823046	G	A	SNP	AP5Z1	ENST00000348624	human	ensembl	74_37	+1	known	missense	c.466	p.V156I	0.001	NULL	NULL	-	no_errors	AP5Z1	HGNC	ENSG00000242802				60	0	0	39	22	36.0656
AP5Z1	0	genome.wustl.edu	37	7	4824582	4824582	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	4824582	4824582	C	T	SNP	AP5Z1	ENST00000348624	human	ensembl	74_37	+1	known	silent	c.834	p.S278	0.011	NULL	NULL	-	no_errors	AP5Z1	HGNC	ENSG00000242802				33	0	0	25	8	24.2424
AP5Z1	0	genome.wustl.edu	37	7	4830499	4830499	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	4830499	4830499	A	G	SNP	AP5Z1	ENST00000348624	human	ensembl	74_37	+1	known	missense	c.2134	p.S712G	1.000	NULL	NULL	-	no_errors	AP5Z1	HGNC	ENSG00000242802				15	0	0	17	4	19.0476
ABCA13	0	genome.wustl.edu	37	7	48313562	48313562	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	48313562	48313562	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	silent	c.4299	p.S1433	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				51	0	0	34	12	26.087
RADIL	0	genome.wustl.edu	37	7	4839270	4839270	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	4839270	4839270	C	T	SNP	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	missense	c.3113	p.G1038D	0.998	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927				19	0	0	24	10	29.4118
ABCA13	0	genome.wustl.edu	37	7	48412054	48412054	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	48412054	48412054	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.11093	p.V3698A	0.987	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				90	0	0	66	20	23.2558
RADIL	0	genome.wustl.edu	37	7	4841381	4841381	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	4841381	4841381	C	A	SNP	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	silent	c.2745	p.G915	0.000	NULL	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927				24	0	0	23	6	20.6897
COBL	0	genome.wustl.edu	37	7	51096986	51096986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	51096986	51096986	C	T	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	missense	c.2053	p.A685T	0.000	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078				84	0	0	81	15	15.625
TNRC18	0	genome.wustl.edu	37	7	5352149	5352149	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	5352149	5352149	G	A	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	silent	c.8373	p.F2791	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				52	0	0	58	13	18.3099
TNRC18	0	genome.wustl.edu	37	7	5410796	5410796	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	5410796	5410796	C	T	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	silent	c.3429	p.P1143	0.930	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				37	0	0	53	12	18.4615
EGFR	0	genome.wustl.edu	37	7	55270249	55270249	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	55270249	55270249	C	T	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	nonsense	c.3202	p.R1068*	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				33	0	0	29	10	25.641
SEPT14	0	genome.wustl.edu	37	7	55912280	55912280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	55912280	55912280	C	T	SNP	SEPT14	ENST00000388975	human	ensembl	74_37	-1	known	missense	c.307	p.V103I	0.998	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT14	HGNC	ENSG00000154997				178	0	0	96	37	27.8195
CCT6A	0	genome.wustl.edu	37	7	56128577	56128577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	56128577	56128577	G	A	SNP	CCT6A	ENST00000275603	human	ensembl	74_37	+1	known	missense	c.1291	p.G431S	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6A	HGNC	ENSG00000146731				80	0	0	60	21	25.9259
ZNF716	0	genome.wustl.edu	37	7	57522188	57522188	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	57522188	57522188	T	C	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	missense	c.62	p.I21T	0.207	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				34	0	0	51	11	17.7419
EIF2AK1	0	genome.wustl.edu	37	7	6066525	6066525	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	6066525	6066525	C	T	SNP	EIF2AK1	ENST00000199389	human	ensembl	74_37	-1	known	missense	c.1598	p.R533Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232				128	0	0	125	8	6.01504
ZNF107	0	genome.wustl.edu	37	7	64168001	64168001	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	64168001	64168001	A	G	SNP	ZNF107	ENST00000344930	human	ensembl	74_37	+1	known	missense	c.1319	p.Y440C	0.017	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF107	HGNC	ENSG00000196247				38	0	0	40	19	32.2034
ZNF138	0	genome.wustl.edu	37	7	64292082	64292082	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	64292082	64292082	A	G	SNP	ZNF138	ENST00000359735	human	ensembl	74_37	+1	known	silent	c.291	p.S97	0.012	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF138	HGNC	ENSG00000197008				63	0	0	47	18	27.6923
DAGLB	0	genome.wustl.edu	37	7	6449476	6449476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	6449476	6449476	C	T	SNP	DAGLB	ENST00000297056	human	ensembl	74_37	-1	known	missense	c.2011	p.V671M	0.000	NULL	pfam_Lipase_3	-	no_errors	DAGLB	HGNC	ENSG00000164535				57	0	0	46	22	32.3529
CCT6P1	0	genome.wustl.edu	37	7	65220792	65220792	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	65220792	65220792	A	G	SNP	CCT6P1	ENST00000442266	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CCT6P1	HGNC	ENSG00000228409				33	0	0	36	12	25
CCT6P1	0	genome.wustl.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	65222986	65222986	G	T	SNP	CCT6P1	ENST00000442266	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	CCT6P1	HGNC	ENSG00000228409				18	0	0	18	4	18.1818
GUSB	0	genome.wustl.edu	37	7	65441107	65441107	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	65441107	65441107	G	A	SNP	GUSB	ENST00000304895	human	ensembl	74_37	-1	known	silent	c.807	p.V269	0.000	pfam_Glyco_hydro_2_Ig-like,superfamily_Glyco_hydro_2_Ig-like	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919				69	0	0	77	36	31.8584
ZNF12	0	genome.wustl.edu	37	7	6731628	6731628	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	6731628	6731628	A	G	SNP	ZNF12	ENST00000405858	human	ensembl	74_37	-1	known	silent	c.945	p.H315	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631				92	0	0	89	8	8.24742
PMS2CL	0	genome.wustl.edu	37	7	6791111	6791111	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	6791111	6791111	A	G	SNP	PMS2CL	ENST00000486256	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PMS2CL	HGNC	ENSG00000187953				58	0	0	24	10	29.4118
TYW1B	0	genome.wustl.edu	37	7	72281143	72281143	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	72281143	72281143	A	G	SNP	TYW1B	ENST00000438904	human	ensembl	74_37	-1	known	missense	c.346	p.F116L	1.000	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1B	HGNC	ENSG00000254184				170	0	0	101	47	31.7568
POM121	0	genome.wustl.edu	37	7	72413424	72413424	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	72413424	72413424	G	A	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	silent	c.2892	p.P964	0.116	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313				91	0	0	108	25	18.797
STAG3L3	0	genome.wustl.edu	37	7	72440408	72440408	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	72440408	72440408	G	A	SNP	STAG3L3	ENST00000436857	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	STAG3L3	HGNC	ENSG00000174353				30	0	0	31	14	31.1111
GTF2IRD2P1	0	genome.wustl.edu	37	7	72657672	72657672	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	72657672	72657672	C	T	SNP	GTF2IRD2P1	ENST00000425256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.211	-	-	-	no_errors	GTF2IRD2P1	HGNC	ENSG00000214544				154	0	0	111	49	30.625
TRIM50	0	genome.wustl.edu	37	7	72738501	72738501	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	72738501	72738501	C	T	SNP	TRIM50	ENST00000333149	human	ensembl	74_37	-1	known	silent	c.285	p.P95	0.948	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM50	HGNC	ENSG00000146755				146	0	0	103	54	34.3949
MLXIPL	0	genome.wustl.edu	37	7	73010556	73010556	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	73010556	73010556	C	T	SNP	MLXIPL	ENST00000313375	human	ensembl	74_37	-1	known	missense	c.1985	p.R662H	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIPL	HGNC	ENSG00000009950				134	0	0	134	47	25.9669
DNAJC30	0	genome.wustl.edu	37	7	73097222	73097222	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	73097222	73097222	G	A	SNP	DNAJC30	ENST00000395176	human	ensembl	74_37	-1	known	missense	c.532	p.R178W	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC30	HGNC	ENSG00000176410				89	0	0	54	38	41.3043
ELN	0	genome.wustl.edu	37	7	73457318	73457318	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	73457318	73457318	T	C	SNP	ELN	ENST00000358929	human	ensembl	74_37	+1	known	silent	c.330	p.A110	0.998	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540				82	0	0	95	16	14.4144
CLIP2	0	genome.wustl.edu	37	7	73770846	73770846	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	73770846	73770846	A	G	SNP	CLIP2	ENST00000223398	human	ensembl	74_37	+1	known	missense	c.910	p.M304V	0.985	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665				90	0	0	79	35	30.7018
GTF2IRD2B	0	genome.wustl.edu	37	7	74564095	74564095	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	74564095	74564095	A	G	SNP	GTF2IRD2B	ENST00000312575	human	ensembl	74_37	+1	known	silent	c.1842	p.V614	0.530	superfamily_RNaseH-like_dom	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2B	HGNC	ENSG00000174428				132	0	0	109	36	24.8276
NSUN5P1	0	genome.wustl.edu	37	7	75045612	75045612	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	75045612	75045612	G	A	SNP	NSUN5P1	ENST00000393633	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.073	-	-	-	no_errors	NSUN5P1	HGNC	ENSG00000223705				34	0	0	26	14	35
HIP1	0	genome.wustl.edu	37	7	75182750	75182750	+	Splice_Site	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	75182750	75182750	A	G	SNP	HIP1	ENST00000336926	human	ensembl	74_37	-1	known	splice_site	c.2295+2	e22+2	0.996	-	-	-	no_errors	HIP1	HGNC	ENSG00000127946				170	0	0	140	70	33.3333
HIP1	0	genome.wustl.edu	37	7	75203099	75203099	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	75203099	75203099	A	G	SNP	HIP1	ENST00000336926	human	ensembl	74_37	-1	known	missense	c.712	p.Y238H	1.000	pfam_ANTH_dom,superfamily_ARM-type_fold	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1	HGNC	ENSG00000127946				78	0	0	80	39	32.7731
POR	0	genome.wustl.edu	37	7	75608787	75608787	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	75608787	75608787	T	C	SNP	POR	ENST00000461988	human	ensembl	74_37	+1	known	missense	c.256	p.F86L	1.000	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	POR	HGNC	ENSG00000127948				39	0	0	36	14	28
DTX2	0	genome.wustl.edu	37	7	76109916	76109916	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	76109916	76109916	C	A	SNP	DTX2	ENST00000324432	human	ensembl	74_37	+1	known	silent	c.90	p.T30	0.989	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	HGNC	ENSG00000091073				47	0	0	54	12	18.1818
DTX2	0	genome.wustl.edu	37	7	76134880	76134880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	76134880	76134880	G	A	SNP	DTX2	ENST00000324432	human	ensembl	74_37	+1	known	missense	c.1831	p.A611T	0.956	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	HGNC	ENSG00000091073				19	0	0	11	7	38.8889
DTX2P1-UPK3BP1-PMS2P11	0	genome.wustl.edu	37	7	76610442	76610442	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	76610442	76610442	C	T	SNP	DTX2P1-UPK3BP1-PMS2P11	ENST00000579700	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	DTX2P1-UPK3BP1-PMS2P11	HGNC	ENSG00000265479				101	0	0	158	26	14.1304
GSAP	0	genome.wustl.edu	37	7	76942814	76942814	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	76942814	76942814	C	T	SNP	GSAP	ENST00000257626	human	ensembl	74_37	-1	known	silent	c.2262	p.R754	0.998	NULL	NULL	-	no_errors	GSAP	HGNC	ENSG00000186088				21	0	0	21	9	30
MAGI2	0	genome.wustl.edu	37	7	77756556	77756556	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	77756556	77756556	G	A	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	silent	c.3381	p.P1127	0.000	superfamily_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				180	0	0	156	62	28.4404
MAGI2	0	genome.wustl.edu	37	7	77762325	77762325	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	77762325	77762325	C	T	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	silent	c.3084	p.A1028	1.000	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				183	0	0	196	70	26.3158
GNAT3	0	genome.wustl.edu	37	7	80091865	80091865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	80091865	80091865	C	T	SNP	GNAT3	ENST00000398291	human	ensembl	74_37	-1	known	missense	c.673	p.A225T	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT3	HGNC	ENSG00000214415				84	0	0	76	4	5
CACNA2D1	0	genome.wustl.edu	37	7	81598282	81598282	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	81598282	81598282	T	C	SNP	CACNA2D1	ENST00000356253	human	ensembl	74_37	-1	known	silent	c.2352	p.G784	1.000	NULL	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956				114	1	0.869565	72	38	34.5455
PCLO	0	genome.wustl.edu	37	7	82595415	82595415	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	82595415	82595415	T	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.3689	p.E1230G	0.234	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				217	0	0	177	60	25.3165
PCLO	0	genome.wustl.edu	37	7	82784067	82784067	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	82784067	82784067	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.1890	p.T630	0.001	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				105	0	0	66	19	22.3529
SEMA3E	0	genome.wustl.edu	37	7	83047757	83047757	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	83047757	83047757	T	C	SNP	SEMA3E	ENST00000307792	human	ensembl	74_37	-1	known	missense	c.499	p.R167G	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3E	HGNC	ENSG00000170381				26	0	0	14	9	39.1304
FZD1	0	genome.wustl.edu	37	7	90895652	90895652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	90895652	90895652	C	T	SNP	FZD1	ENST00000287934	human	ensembl	74_37	+1	known	missense	c.1457	p.A486V	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD1	HGNC	ENSG00000157240				243	0	0	302	91	23.1552
AKAP9	0	genome.wustl.edu	37	7	91729181	91729181	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	91729181	91729181	A	G	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.10906	p.N3636D	0.230	superfamily_YbaB	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				106	0	0	72	39	35.1351
ANKIB1	0	genome.wustl.edu	37	7	91972386	91972386	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	91972386	91972386	A	G	SNP	ANKIB1	ENST00000265742	human	ensembl	74_37	+1	known	missense	c.836	p.N279S	1.000	NULL	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629				133	0	0	144	39	21.3115
CCDC132	0	genome.wustl.edu	37	7	92883210	92883210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	92883210	92883210	C	T	SNP	CCDC132	ENST00000305866	human	ensembl	74_37	+1	known	missense	c.263	p.A88V	1.000	pfam_Vacuolar_sorting-assoc_54	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766				41	0	0	21	5	19.2308
TFPI2	0	genome.wustl.edu	37	7	93519623	93519623	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	93519623	93519623	C	T	SNP	TFPI2	ENST00000222543	human	ensembl	74_37	-1	known	missense	c.97	p.A33T	0.000	pirsf_Prot_inhib_I2_TFPI,superfamily_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	pirsf_Prot_inhib_I2_TFPI,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	TFPI2	HGNC	ENSG00000105825				55	0	0	57	21	26.9231
CASD1	0	genome.wustl.edu	37	7	94184854	94184854	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	94184854	94184854	C	A	SNP	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	silent	c.2178	p.I726	0.997	NULL	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995				56	0	0	41	22	34.9206
PEG10	0	genome.wustl.edu	37	7	94293284	94293284	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	94293284	94293284	G	A	SNP	PEG10	ENST00000482108	human	ensembl	74_37	+1	known	missense	c.416	p.R139H	0.035	pfam_Retrotrans_gag_dom	pfam_Retrotrans_gag_dom,superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PEG10	HGNC	ENSG00000242265				156	0	0	190	11	5.47264
SLC25A13	0	genome.wustl.edu	37	7	95751286	95751286	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	95751286	95751286	T	C	SNP	SLC25A13	ENST00000416240	human	ensembl	74_37	-1	known	missense	c.1618	p.T540A	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864				117	0	0	100	37	27.0073
SLC25A13	0	genome.wustl.edu	37	7	95800793	95800793	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	95800793	95800793	T	C	SNP	SLC25A13	ENST00000416240	human	ensembl	74_37	-1	known	missense	c.1224	p.I408M	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864				40	0	0	27	9	25
ASNS	0	genome.wustl.edu	37	7	97482432	97482432	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	97482432	97482432	A	G	SNP	ASNS	ENST00000175506	human	ensembl	74_37	-1	known	silent	c.1416	p.D472	1.000	NULL	pfam_Asn_synthase,pfam_GATase_dom,tigrfam_Asn_synth_AEB	-	no_errors	ASNS	HGNC	ENSG00000070669				58	0	0	36	11	23.4043
BAIAP2L1	0	genome.wustl.edu	37	7	97933665	97933665	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	97933665	97933665	C	T	SNP	BAIAP2L1	ENST00000005260	human	ensembl	74_37	-1	known	missense	c.1265	p.S422N	1.000	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2L1	HGNC	ENSG00000006453				43	0	0	51	15	22.7273
TMEM130	0	genome.wustl.edu	37	7	98460759	98460759	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	98460759	98460759	C	T	SNP	TMEM130	ENST00000416379	human	ensembl	74_37	-1	known	missense	c.350	p.C117Y	1.000	NULL	superfamily_PKD_dom,pfscan_PKD_dom	-	no_errors	TMEM130	HGNC	ENSG00000166448				112	0	0	119	32	21.1921
TMEM130	0	genome.wustl.edu	37	7	98460916	98460916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	98460916	98460916	C	T	SNP	TMEM130	ENST00000416379	human	ensembl	74_37	-1	known	missense	c.193	p.A65T	0.001	NULL	superfamily_PKD_dom,pfscan_PKD_dom	-	no_errors	TMEM130	HGNC	ENSG00000166448				38	0	0	51	13	20.3125
TRRAP	0	genome.wustl.edu	37	7	98495397	98495397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	98495397	98495397	G	A	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.541	p.E181K	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				90	0	0	89	27	23.2759
SMURF1	0	genome.wustl.edu	37	7	98658259	98658259	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	98658259	98658259	T	C	SNP	SMURF1	ENST00000361125	human	ensembl	74_37	-1	known	missense	c.166	p.N56D	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF1	HGNC	ENSG00000198742				40	0	0	33	25	43.1034
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99022489	99022489	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	99022489	99022489	G	A	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	nonsense	c.1813	p.Q605*	1.000	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919				68	0	0	50	27	35.0649
ZNF789	0	genome.wustl.edu	37	7	99081725	99081725	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	99081725	99081725	C	T	SNP	ZNF789	ENST00000331410	human	ensembl	74_37	+1	known	missense	c.224	p.P75L	0.066	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF789	HGNC	ENSG00000198556				125	0	0	92	45	32.8467
TRIM4	0	genome.wustl.edu	37	7	99516942	99516942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	99516942	99516942	C	T	SNP	TRIM4	ENST00000355947	human	ensembl	74_37	-1	known	missense	c.83	p.G28D	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM4	HGNC	ENSG00000146833				8	0	0	12	4	25
ZNF3	0	genome.wustl.edu	37	7	99674943	99674943	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	99674943	99674943	T	G	SNP	ZNF3	ENST00000299667	human	ensembl	74_37	-1	known	missense	c.38	p.Q13P	0.999	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF3	HGNC	ENSG00000166526				102	0	0	64	28	30.4348
MCM7	0	genome.wustl.edu	37	7	99696971	99696971	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	99696971	99696971	T	A	SNP	MCM7	ENST00000303887	human	ensembl	74_37	-1	known	missense	c.332	p.Q111L	0.998	superfamily_NA-bd_OB-fold	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508				126	0	0	146	61	29.4686
CNPY4	0	genome.wustl.edu	37	7	99722519	99722519	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	99722519	99722519	C	A	SNP	CNPY4	ENST00000480692	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CNPY4	HGNC	ENSG00000166997				132	0	0	123	52	29.7143
VPS13B	0	genome.wustl.edu	37	8	100831680	100831680	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	100831680	100831680	A	G	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.8737	p.T2913A	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				99	0	0	40	38	48.7179
FBXO43	0	genome.wustl.edu	37	8	101154026	101154026	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	101154026	101154026	A	G	SNP	FBXO43	ENST00000428847	human	ensembl	74_37	-1	known	silent	c.456	p.C152	0.000	NULL	pfam_Znf_C6HC,superfamily_F-box_dom,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509				113	0	0	48	28	36.8421
SPAG1	0	genome.wustl.edu	37	8	101271490	101271490	+	RNA	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	101271490	101271490	A	G	SNP	SPAG1	ENST00000519409	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SPAG1	HGNC	ENSG00000104450				76	0	0	34	24	41.3793
RNF19A	0	genome.wustl.edu	37	8	101300184	101300184	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	101300184	101300184	C	T	SNP	RNF19A	ENST00000341084	human	ensembl	74_37	-1	known	silent	c.219	p.R73	0.998	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677				146	0	0	41	35	46.0526
KLF10	0	genome.wustl.edu	37	8	103663818	103663818	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	103663818	103663818	C	T	SNP	KLF10	ENST00000285407	human	ensembl	74_37	-1	known	missense	c.742	p.V248M	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF10	HGNC	ENSG00000155090				90	0	0	44	18	29.0323
PRSS55	0	genome.wustl.edu	37	8	10383157	10383157	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	10383157	10383157	G	A	SNP	PRSS55	ENST00000328655	human	ensembl	74_37	+1	known	missense	c.62	p.R21Q	0.036	NULL	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS55	HGNC	ENSG00000184647				66	0	0	31	15	32.6087
LRP12	0	genome.wustl.edu	37	8	105601078	105601078	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	105601078	105601078	C	T	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	silent	c.48	p.A16	0.425	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				17	0	0	25	21	45.6522
ZFPM2	0	genome.wustl.edu	37	8	106813943	106813943	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	106813943	106813943	C	T	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	missense	c.1633	p.P545S	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				159	0	0	67	32	32.3232
SLC35G5	0	genome.wustl.edu	37	8	11189439	11189439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	11189439	11189439	C	T	SNP	SLC35G5	ENST00000382435	human	ensembl	74_37	+1	known	missense	c.824	p.T275I	0.965	pfam_DMT	pfam_DMT	-	no_errors	SLC35G5	HGNC	ENSG00000177710				147	0	0	82	54	39.7059
DSCC1	0	genome.wustl.edu	37	8	120865336	120865336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	120865336	120865336	G	A	SNP	DSCC1	ENST00000313655	human	ensembl	74_37	-1	known	missense	c.302	p.P101L	1.000	pfam_Sister_chromatid_cohesion_Dcc1	pfam_Sister_chromatid_cohesion_Dcc1	-	no_errors	DSCC1	HGNC	ENSG00000136982				76	0	0	16	19	54.2857
DEPTOR	0	genome.wustl.edu	37	8	121021305	121021305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	121021305	121021305	G	A	SNP	DEPTOR	ENST00000286234	human	ensembl	74_37	+1	known	missense	c.1034	p.R345Q	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DEP_dom,superfamily_PDZ,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ	-	no_errors	DEPTOR	HGNC	ENSG00000155792				34	0	0	30	18	37.5
SNTB1	0	genome.wustl.edu	37	8	121644750	121644750	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	121644750	121644750	C	T	SNP	SNTB1	ENST00000395601	human	ensembl	74_37	-1	known	silent	c.930	p.E310	1.000	NULL	pfam_PDZ,pfam_Pleckstrin_homology,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB1	HGNC	ENSG00000172164				67	0	0	37	19	33.9286
FAM86B2	0	genome.wustl.edu	37	8	12287944	12287944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	12287944	12287944	G	A	SNP	FAM86B2	ENST00000262365	human	ensembl	74_37	-1	known	missense	c.257	p.T86M	0.989	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86B2	HGNC	ENSG00000145002				41	0	0	37	11	22.9167
ZHX2	0	genome.wustl.edu	37	8	123965085	123965085	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	123965085	123965085	G	T	SNP	ZHX2	ENST00000314393	human	ensembl	74_37	+1	known	missense	c.1335	p.K445N	0.996	superfamily_Homeodomain-like,smart_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764				55	0	0	48	20	29.4118
FBXO32	0	genome.wustl.edu	37	8	124515635	124515635	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	124515635	124515635	A	G	SNP	FBXO32	ENST00000517956	human	ensembl	74_37	-1	known	missense	c.1046	p.F349S	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO32	HGNC	ENSG00000156804				55	0	0	25	12	32.4324
ANXA13	0	genome.wustl.edu	37	8	124714888	124714888	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	124714888	124714888	G	A	SNP	ANXA13	ENST00000262219	human	ensembl	74_37	-1	known	silent	c.303	p.Y101	0.998	pfam_Annexin_repeat,smart_Annexin_repeat	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXIII	-	no_errors	ANXA13	HGNC	ENSG00000104537				99	0	0	88	6	6.38298
FER1L6	0	genome.wustl.edu	37	8	124992883	124992883	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	124992883	124992883	A	T	SNP	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	missense	c.1242	p.K414N	0.625	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				124	0	0	76	49	39.2
FER1L6	0	genome.wustl.edu	37	8	125113580	125113580	+	Splice_Site	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	125113580	125113580	G	A	SNP	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	splice_site	c.5125+1	e37+1	1.000	-	-	-	no_errors	FER1L6	HGNC	ENSG00000214814				54	0	0	19	16	45.7143
NDUFB9	0	genome.wustl.edu	37	8	125562077	125562077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	125562077	125562077	G	A	SNP	NDUFB9	ENST00000276689	human	ensembl	74_37	+1	known	missense	c.484	p.D162N	0.729	NULL	pfam_Complex1_LYR	-	no_errors	NDUFB9	HGNC	ENSG00000147684				59	0	0	38	17	30.9091
KIAA0196	0	genome.wustl.edu	37	8	126049532	126049532	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	126049532	126049532	T	C	SNP	KIAA0196	ENST00000318410	human	ensembl	74_37	-1	known	missense	c.3128	p.N1043S	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961				102	0	0	33	16	32.6531
ADCY8	0	genome.wustl.edu	37	8	131964196	131964196	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	131964196	131964196	T	C	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.1159	p.I387V	1.000	smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				83	0	0	27	18	40
ADCY8	0	genome.wustl.edu	37	8	132052023	132052023	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	132052023	132052023	T	C	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.557	p.N186S	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				73	0	0	41	26	38.806
PHF20L1	0	genome.wustl.edu	37	8	133854953	133854953	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	133854953	133854953	C	T	SNP	PHF20L1	ENST00000220847	human	ensembl	74_37	+1	known	missense	c.742	p.H248Y	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	-	no_errors	PHF20L1	HGNC	ENSG00000129292				83	0	0	32	18	36
TG	0	genome.wustl.edu	37	8	133883650	133883650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	133883650	133883650	G	A	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.332	p.S111N	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				117	0	0	42	34	44.7368
ZFAT	0	genome.wustl.edu	37	8	135613725	135613725	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	135613725	135613725	T	C	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.2237	p.Y746C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				101	0	0	48	35	42.1687
KCNK9	0	genome.wustl.edu	37	8	140631269	140631269	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	140631269	140631269	C	T	SNP	KCNK9	ENST00000303015	human	ensembl	74_37	-1	known	silent	c.357	p.P119	0.027	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK,prints_KCNK9,prints_2pore_dom_K_chnl	-	no_errors	KCNK9	HGNC	ENSG00000169427				36	0	0	39	19	32.7586
AGO2	0	genome.wustl.edu	37	8	141549445	141549445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	141549445	141549445	G	A	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	missense	c.2143	p.L715F	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				86	0	0	58	30	34.0909
DENND3	0	genome.wustl.edu	37	8	142151330	142151330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	142151330	142151330	C	T	SNP	DENND3	ENST00000262585	human	ensembl	74_37	+1	known	missense	c.290	p.T97M	0.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339				120	0	0	92	20	17.8571
ZNF696	0	genome.wustl.edu	37	8	144378556	144378556	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	144378556	144378556	C	T	SNP	ZNF696	ENST00000330143	human	ensembl	74_37	+1	known	silent	c.711	p.Y237	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF696	HGNC	ENSG00000185730				29	0	0	30	17	36.1702
NAPRT1	0	genome.wustl.edu	37	8	144657425	144657425	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	144657425	144657425	T	C	SNP	NAPRT1	ENST00000276844	human	ensembl	74_37	-1	known	missense	c.1382	p.E461G	0.052	superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB	-	no_errors	NAPRT1	HGNC	ENSG00000147813				53	0	0	32	26	44.8276
EPPK1	0	genome.wustl.edu	37	8	144940342	144940342	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	144940342	144940342	G	A	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.7080	p.D2360	0.843	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				463	0	0	536	35	6.1296
EPPK1	0	genome.wustl.edu	37	8	144941902	144941902	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	144941902	144941902	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.5520	p.T1840	0.000	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				192	1	0.518135	118	61	34.0782
PLEC	0	genome.wustl.edu	37	8	144990789	144990789	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	144990789	144990789	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.13611	p.P4537	0.184	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				78	0	0	46	27	36.9863
PLEC	0	genome.wustl.edu	37	8	144990949	144990949	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	144990949	144990949	T	C	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.13451	p.D4484G	1.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				80	0	0	49	37	43.0233
PLEC	0	genome.wustl.edu	37	8	144999695	144999695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	144999695	144999695	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.4813	p.R1605C	0.969	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				40	0	0	25	12	32.4324
PARP10	0	genome.wustl.edu	37	8	145057704	145057704	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	145057704	145057704	G	T	SNP	PARP10	ENST00000313028	human	ensembl	74_37	-1	known	missense	c.2053	p.L685I	0.561	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685				26	0	0	9	3	25
CYC1	0	genome.wustl.edu	37	8	145150773	145150773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	145150773	145150773	G	A	SNP	CYC1	ENST00000318911	human	ensembl	74_37	+1	known	missense	c.167	p.G56D	1.000	NULL	pfam_Cyt_c1,superfamily_Cyt_c-like_dom,superfamily_Cyt_c1_TM_anchor_C,prints_Cyt_c1	-	no_errors	CYC1	HGNC	ENSG00000179091				74	0	0	58	37	38.9474
HSF1	0	genome.wustl.edu	37	8	145537600	145537600	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	145537600	145537600	G	A	SNP	HSF1	ENST00000528842	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	HSF1	HGNC	ENSG00000185122				58	0	0	37	25	40.3226
KIFC2	0	genome.wustl.edu	37	8	145692389	145692389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	145692389	145692389	G	A	SNP	KIFC2	ENST00000301332	human	ensembl	74_37	+1	known	missense	c.226	p.A76T	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIFC2	HGNC	ENSG00000167702				20	0	0	12	4	25
ZNF16	0	genome.wustl.edu	37	8	146156380	146156380	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	146156380	146156380	T	C	SNP	ZNF16	ENST00000276816	human	ensembl	74_37	-1	known	missense	c.1793	p.E598G	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631				79	0	0	52	7	11.8644
ZNF16	0	genome.wustl.edu	37	8	146156435	146156435	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	146156435	146156435	T	C	SNP	ZNF16	ENST00000276816	human	ensembl	74_37	-1	known	missense	c.1738	p.K580E	0.972	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631				74	0	0	31	23	42.5926
MSR1	0	genome.wustl.edu	37	8	15978090	15978090	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	15978090	15978090	G	A	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	silent	c.1059	p.V353	0.262	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				104	0	0	61	44	41.9048
SLC7A2	0	genome.wustl.edu	37	8	17400836	17400836	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	17400836	17400836	G	A	SNP	SLC7A2	ENST00000004531	human	ensembl	74_37	+1	known	silent	c.108	p.S36	0.000	NULL	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989				64	0	0	28	22	44
ARHGEF10	0	genome.wustl.edu	37	8	1842674	1842674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	1842674	1842674	C	T	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	missense	c.1451	p.A484V	0.999	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				69	0	0	48	10	17.2414
PSD3	0	genome.wustl.edu	37	8	18666263	18666263	+	Splice_Site	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	18666263	18666263	A	G	SNP	PSD3	ENST00000286485	human	ensembl	74_37	-1	known	splice_site	c.32+2	e1+2	1.000	-	-	-	no_errors	PSD3	HGNC	ENSG00000156011				52	0	0	27	18	40
MYOM2	0	genome.wustl.edu	37	8	2026951	2026951	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	2026951	2026951	C	T	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	nonsense	c.1399	p.R467*	0.982	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				298	0	0	124	85	40.6699
NUDT18	0	genome.wustl.edu	37	8	21965652	21965652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	21965652	21965652	C	T	SNP	NUDT18	ENST00000309188	human	ensembl	74_37	-1	known	missense	c.368	p.R123H	0.129	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase	-	no_errors	NUDT18	HGNC	ENSG00000173566				11	0	0	6	6	50
POLR3D	0	genome.wustl.edu	37	8	22105771	22105771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	22105771	22105771	C	T	SNP	POLR3D	ENST00000397802	human	ensembl	74_37	+1	known	missense	c.466	p.R156C	1.000	NULL	pfam_RPC4	-	no_errors	POLR3D	HGNC	ENSG00000168495				149	0	0	120	11	8.39695
SLC39A14	0	genome.wustl.edu	37	8	22262311	22262311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	22262311	22262311	G	A	SNP	SLC39A14	ENST00000359741	human	ensembl	74_37	+1	known	missense	c.88	p.A30T	0.419	NULL	pfam_ZIP	-	no_errors	SLC39A14	HGNC	ENSG00000104635				154	0	0	138	9	6.12245
PDLIM2	0	genome.wustl.edu	37	8	22442669	22442669	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	22442669	22442669	G	A	SNP	PDLIM2	ENST00000308354	human	ensembl	74_37	+1	known	missense	c.1205	p.S402N	0.358	NULL	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM2	HGNC	ENSG00000120913				117	0	0	48	36	42.8571
LOXL2	0	genome.wustl.edu	37	8	23167365	23167365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	23167365	23167365	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	missense	c.1696	p.R566W	1.000	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				67	0	0	25	17	40.4762
ADAMDEC1	0	genome.wustl.edu	37	8	24262849	24262849	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	24262849	24262849	G	T	SNP	ADAMDEC1	ENST00000519953	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.029	-	-	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028				38	0	0	18	13	41.9355
NEFM	0	genome.wustl.edu	37	8	24771467	24771467	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	24771467	24771467	G	A	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.161	p.R54H	1.000	pfam_Intermed_filament_DNA-bd	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				86	0	0	57	14	19.7183
NEFM	0	genome.wustl.edu	37	8	24771944	24771944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	24771944	24771944	C	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.638	p.A213V	0.998	pfam_IF,prints_Keratin_I	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				47	0	0	24	23	48.9362
DOCK5	0	genome.wustl.edu	37	8	25174531	25174531	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	25174531	25174531	C	T	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	missense	c.1327	p.R443W	1.000	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				85	0	0	36	29	44.6154
PTK2B	0	genome.wustl.edu	37	8	27308338	27308338	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	27308338	27308338	C	T	SNP	PTK2B	ENST00000346049	human	ensembl	74_37	+1	known	missense	c.2413	p.R805W	0.997	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899				49	0	0	52	6	10.3448
CHRNA2	0	genome.wustl.edu	37	8	27320602	27320602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	27320602	27320602	G	A	SNP	CHRNA2	ENST00000407991	human	ensembl	74_37	-1	known	missense	c.1358	p.A453V	0.001	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA2	HGNC	ENSG00000120903				119	0	0	57	27	32.1429
SCARA5	0	genome.wustl.edu	37	8	27779530	27779530	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	27779530	27779530	C	T	SNP	SCARA5	ENST00000354914	human	ensembl	74_37	-1	known	silent	c.474	p.A158	0.137	NULL	pfam_SRCR,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	SCARA5	HGNC	ENSG00000168079				23	0	0	8	14	63.6364
NUGGC	0	genome.wustl.edu	37	8	27922170	27922170	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	27922170	27922170	G	A	SNP	NUGGC	ENST00000341513	human	ensembl	74_37	-1	known	missense	c.790	p.R264C	0.116	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	NUGGC	HGNC	ENSG00000189233				60	0	0	52	5	8.77193
UBXN8	0	genome.wustl.edu	37	8	30601697	30601697	+	RNA	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	30601697	30601697	T	A	SNP	UBXN8	ENST00000265616	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBXN8	HGNC	ENSG00000104691				23	0	0	10	8	44.4444
DUSP26	0	genome.wustl.edu	37	8	33451249	33451249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	33451249	33451249	G	A	SNP	DUSP26	ENST00000256261	human	ensembl	74_37	-1	known	missense	c.238	p.R80C	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famA,prints_Atypical_DUSP	-	no_errors	DUSP26	HGNC	ENSG00000133878				48	0	0	32	15	31.9149
HTRA4	0	genome.wustl.edu	37	8	38834212	38834212	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	38834212	38834212	A	G	SNP	HTRA4	ENST00000302495	human	ensembl	74_37	+1	known	missense	c.725	p.D242G	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,prints_Peptidase_S1C	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA4	HGNC	ENSG00000169495				52	0	0	23	15	39.4737
ANK1	0	genome.wustl.edu	37	8	41529903	41529903	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	41529903	41529903	C	T	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.5065	p.V1689M	0.941	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				132	0	0	73	5	6.41026
KAT6A	0	genome.wustl.edu	37	8	41790996	41790996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	41790996	41790996	C	T	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.4742	p.S1581N	0.992	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				66	0	0	48	29	37.6623
PLAT	0	genome.wustl.edu	37	8	42037527	42037527	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	42037527	42037527	C	T	SNP	PLAT	ENST00000220809	human	ensembl	74_37	-1	known	missense	c.1280	p.R427H	0.482	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Kringle,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PLAT	HGNC	ENSG00000104368				28	0	0	19	8	29.6296
DKK4	0	genome.wustl.edu	37	8	42232287	42232287	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	42232287	42232287	C	T	SNP	DKK4	ENST00000220812	human	ensembl	74_37	-1	known	missense	c.407	p.G136D	0.073	NULL	pfam_Dickkopf_N,pfam_Prokineticin_domain	-	no_errors	DKK4	HGNC	ENSG00000104371				222	0	0	124	45	26.6272
CHRNB3	0	genome.wustl.edu	37	8	42586906	42586906	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	42586906	42586906	C	A	SNP	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	silent	c.456	p.S152	0.142	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432				78	0	0	36	5	12.1951
PRKDC	0	genome.wustl.edu	37	8	48749922	48749922	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	48749922	48749922	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.7609	p.R2537W	1.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				38	0	0	13	10	43.4783
PRKDC	0	genome.wustl.edu	37	8	48852211	48852211	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	48852211	48852211	A	G	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.1013	p.L338P	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				58	0	0	38	15	28.3019
PXDNL	0	genome.wustl.edu	37	8	52321984	52321984	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	52321984	52321984	A	G	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2200	p.C734R	0.992	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				32	0	0	25	6	19.3548
PXDNL	0	genome.wustl.edu	37	8	52366263	52366263	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	52366263	52366263	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	silent	c.1065	p.G355	0.997	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				69	0	0	40	20	33.3333
NPBWR1	0	genome.wustl.edu	37	8	53852828	53852828	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	53852828	53852828	T	A	SNP	NPBWR1	ENST00000331251	human	ensembl	74_37	+1	known	missense	c.361	p.F121I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Opioid_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729				42	0	0	49	4	7.54717
PLAG1	0	genome.wustl.edu	37	8	57079998	57079998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	57079998	57079998	G	A	SNP	PLAG1	ENST00000316981	human	ensembl	74_37	-1	known	missense	c.307	p.R103W	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAG1	HGNC	ENSG00000181690				24	0	0	13	4	23.5294
SDR16C5	0	genome.wustl.edu	37	8	57228768	57228768	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	57228768	57228768	C	A	SNP	SDR16C5	ENST00000303749	human	ensembl	74_37	-1	known	missense	c.139	p.G47C	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR16C5	HGNC	ENSG00000170786				103	0	0	51	32	38.5542
CLVS1	0	genome.wustl.edu	37	8	62371019	62371019	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	62371019	62371019	A	G	SNP	CLVS1	ENST00000325897	human	ensembl	74_37	+1	known	missense	c.895	p.T299A	1.000	superfamily_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	CLVS1	HGNC	ENSG00000177182				88	0	0	34	23	40.3509
ASPH	0	genome.wustl.edu	37	8	62430155	62430155	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	62430155	62430155	C	T	SNP	ASPH	ENST00000379454	human	ensembl	74_37	-1	known	silent	c.2058	p.R686	1.000	pfam_Asp_Arg_b-Hydrxlase	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363				97	0	0	47	22	31.8841
ANGPT2	0	genome.wustl.edu	37	8	6372234	6372234	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	6372234	6372234	G	A	SNP	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	silent	c.996	p.S332	0.110	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				223	0	0	158	15	8.67052
ANGPT2	0	genome.wustl.edu	37	8	6378851	6378851	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	6378851	6378851	A	G	SNP	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	missense	c.647	p.L216P	0.996	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				67	0	0	26	11	29.7297
VCPIP1	0	genome.wustl.edu	37	8	67563711	67563711	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	67563711	67563711	T	A	SNP	VCPIP1	ENST00000310421	human	ensembl	74_37	-1	known	missense	c.2779	p.I927F	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073				92	0	0	29	21	42
ARFGEF1	0	genome.wustl.edu	37	8	68150672	68150672	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	68150672	68150672	T	C	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	silent	c.3195	p.K1065	0.998	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				67	0	0	22	9	29.0323
SULF1	0	genome.wustl.edu	37	8	70515459	70515459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	70515459	70515459	C	T	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	missense	c.1094	p.A365V	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				219	0	0	135	53	28.1915
LY96	0	genome.wustl.edu	37	8	74903730	74903730	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	74903730	74903730	C	A	SNP	LY96	ENST00000284818	human	ensembl	74_37	+1	known	missense	c.53	p.A18D	0.841	NULL	pfam_ML_dom,superfamily_Ig_E-set,smart_ML_dom	-	no_errors	LY96	HGNC	ENSG00000154589				128	0	0	68	16	19.0476
JPH1	0	genome.wustl.edu	37	8	75227797	75227797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	75227797	75227797	G	A	SNP	JPH1	ENST00000519947	human	ensembl	74_37	-1	known	missense	c.73	p.R25C	1.000	NULL	NULL	-	no_errors	JPH1	HGNC	ENSG00000104369				36	0	0	45	14	23.7288
ZFHX4	0	genome.wustl.edu	37	8	77766906	77766906	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	77766906	77766906	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	silent	c.7749	p.D2583	0.984	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				60	0	0	35	13	27.0833
ZFHX4	0	genome.wustl.edu	37	8	77768043	77768043	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	77768043	77768043	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	silent	c.8886	p.L2962	0.968	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				42	0	0	21	15	41.6667
ZFHX4	0	genome.wustl.edu	37	8	77768387	77768387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	77768387	77768387	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.9230	p.T3077M	0.671	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				159	0	0	100	62	38.2716
CA13	0	genome.wustl.edu	37	8	86171741	86171741	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	86171741	86171741	A	G	SNP	CA13	ENST00000321764	human	ensembl	74_37	+1	known	missense	c.327	p.I109M	0.231	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA13	HGNC	ENSG00000185015				115	0	0	54	32	37.2093
CPNE3	0	genome.wustl.edu	37	8	87568519	87568519	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	87568519	87568519	G	A	SNP	CPNE3	ENST00000198765	human	ensembl	74_37	+1	known	missense	c.1444	p.A482T	1.000	smart_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE3	HGNC	ENSG00000085719				80	0	0	42	11	20.7547
RUNX1T1	0	genome.wustl.edu	37	8	92998411	92998411	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	92998411	92998411	C	T	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	missense	c.1253	p.G418D	1.000	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				151	0	0	75	63	45.6522
RUNX1T1	0	genome.wustl.edu	37	8	92999191	92999191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	92999191	92999191	C	T	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	missense	c.1034	p.G345D	1.000	NULL	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				89	0	0	37	35	48.6111
RBM12B	0	genome.wustl.edu	37	8	94745716	94745716	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	94745716	94745716	T	C	SNP	RBM12B	ENST00000399300	human	ensembl	74_37	-1	known	missense	c.2923	p.N975D	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808				44	0	0	20	9	31.0345
TMEM67	0	genome.wustl.edu	37	8	94767147	94767147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	94767147	94767147	C	T	SNP	TMEM67	ENST00000453321	human	ensembl	74_37	+1	known	missense	c.5	p.A2V	0.636	NULL	pfam_Meckelin,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	TMEM67	HGNC	ENSG00000164953				140	0	0	83	46	35.6589
POP1	0	genome.wustl.edu	37	8	99149119	99149119	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	99149119	99149119	G	A	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	silent	c.1299	p.R433	0.978	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				159	0	0	70	55	44
NIPAL2	0	genome.wustl.edu	37	8	99264772	99264772	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	99264772	99264772	C	T	SNP	NIPAL2	ENST00000341166	human	ensembl	74_37	-1	known	missense	c.295	p.V99M	0.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA	-	no_errors	NIPAL2	HGNC	ENSG00000104361				82	0	0	52	5	8.77193
KCNS2	0	genome.wustl.edu	37	8	99441079	99441079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	99441079	99441079	G	A	SNP	KCNS2	ENST00000287042	human	ensembl	74_37	+1	known	missense	c.872	p.G291D	1.000	pfam_Ion_trans_dom	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486				102	0	0	59	39	39.7959
STK3	0	genome.wustl.edu	37	8	99539030	99539030	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	99539030	99539030	A	G	SNP	STK3	ENST00000419617	human	ensembl	74_37	-1	known	silent	c.1257	p.P419	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Mst1_SARAH_domain,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SARAH_dom,pfscan_Prot_kinase_dom	-	no_errors	STK3	HGNC	ENSG00000104375				48	0	0	38	12	24
TDRD7	0	genome.wustl.edu	37	9	100240782	100240782	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	100240782	100240782	C	T	SNP	TDRD7	ENST00000355295	human	ensembl	74_37	+1	known	missense	c.2228	p.T743I	0.575	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116				141	0	0	51	17	25
XPA	0	genome.wustl.edu	37	9	100456035	100456035	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	100456035	100456035	G	T	SNP	XPA	ENST00000375128	human	ensembl	74_37	-1	known	missense	c.179	p.A60D	0.035	NULL	pfam_XPA_C,pfam_Znf_XPA_CS,superfamily_DNA-bd_dom_put,tigrfam_XPA	-	no_errors	XPA	HGNC	ENSG00000136936				66	0	0	19	18	48.6486
FOXE1	0	genome.wustl.edu	37	9	100617187	100617187	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	100617187	100617187	G	A	SNP	FOXE1	ENST00000375123	human	ensembl	74_37	+1	known	missense	c.991	p.G331S	0.987	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXE1	HGNC	ENSG00000178919				15	0	0	18	18	50
MSANTD3	0	genome.wustl.edu	37	9	103204337	103204337	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	103204337	103204337	G	A	SNP	MSANTD3	ENST00000395067	human	ensembl	74_37	+1	known	silent	c.117	p.A39	0.001	NULL	NULL	-	no_errors	MSANTD3	HGNC	ENSG00000066697				69	0	0	34	17	33.3333
RNF20	0	genome.wustl.edu	37	9	104309176	104309176	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	104309176	104309176	G	A	SNP	RNF20	ENST00000389120	human	ensembl	74_37	+1	known	silent	c.822	p.L274	0.966	superfamily_STAT_TF_coiled-coil	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827				79	0	0	46	7	13.2075
ABCA1	0	genome.wustl.edu	37	9	107602587	107602587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	107602587	107602587	C	T	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	missense	c.1027	p.A343T	0.043	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				89	0	0	38	21	35.5932
ZNF462	0	genome.wustl.edu	37	9	109690913	109690913	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	109690913	109690913	T	C	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.4720	p.Y1574H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				64	0	0	62	7	10.1449
ZNF462	0	genome.wustl.edu	37	9	109694687	109694687	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	109694687	109694687	C	T	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	silent	c.6153	p.Y2051	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				40	0	0	20	18	47.3684
ACTL7A	0	genome.wustl.edu	37	9	111625537	111625537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	111625537	111625537	G	A	SNP	ACTL7A	ENST00000333999	human	ensembl	74_37	+1	known	missense	c.935	p.C312Y	0.984	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7A	HGNC	ENSG00000187003				103	0	0	56	36	39.1304
IKBKAP	0	genome.wustl.edu	37	9	111673454	111673454	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	111673454	111673454	A	G	SNP	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	missense	c.1196	p.V399A	0.996	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061				44	0	0	19	9	32.1429
IKBKAP	0	genome.wustl.edu	37	9	111674645	111674645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	111674645	111674645	C	T	SNP	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	missense	c.1088	p.C363Y	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061				88	0	0	62	17	21.519
EPB41L4B	0	genome.wustl.edu	37	9	111970203	111970203	+	Splice_Site	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	111970203	111970203	C	T	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	splice_site	c.1878+1	e18+1	1.000	-	-	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				157	0	0	52	43	45.2632
SVEP1	0	genome.wustl.edu	37	9	113217886	113217886	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	113217886	113217886	G	A	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	silent	c.3771	p.C1257	0.025	pfam_EG-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				36	0	0	19	9	32.1429
KIAA0368	0	genome.wustl.edu	37	9	114131334	114131334	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	114131334	114131334	C	T	SNP	KIAA0368	ENST00000259335	human	ensembl	74_37	-1	known	silent	c.5628	p.P1876	0.985	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813				102	0	0	40	21	34.4262
KIAA0368	0	genome.wustl.edu	37	9	114145514	114145514	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	114145514	114145514	G	A	SNP	KIAA0368	ENST00000259335	human	ensembl	74_37	-1	known	silent	c.4314	p.T1438	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813				31	0	0	26	10	27.7778
KIAA0368	0	genome.wustl.edu	37	9	114246712	114246712	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	114246712	114246712	C	T	SNP	KIAA0368	ENST00000259335	human	ensembl	74_37	-1	known	silent	c.201	p.A67	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA0368	HGNC	ENSG00000136813				22	0	0	15	16	51.6129
ZNF618	0	genome.wustl.edu	37	9	116750619	116750619	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	116750619	116750619	C	T	SNP	ZNF618	ENST00000374126	human	ensembl	74_37	+1	known	silent	c.96	p.S32	1.000	NULL	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657				33	0	0	23	14	37.8378
ZNF618	0	genome.wustl.edu	37	9	116811006	116811006	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	116811006	116811006	G	T	SNP	ZNF618	ENST00000374126	human	ensembl	74_37	+1	known	missense	c.1424	p.R475M	1.000	NULL	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657				91	0	0	62	36	36.7347
COL27A1	0	genome.wustl.edu	37	9	117050991	117050991	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	117050991	117050991	G	T	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.4054	p.G1352C	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				42	0	0	15	13	46.4286
TNC	0	genome.wustl.edu	37	9	117852871	117852871	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	117852871	117852871	C	A	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	nonsense	c.427	p.G143*	0.999	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				230	0	0	101	69	40.5882
PAPPA	0	genome.wustl.edu	37	9	118950086	118950086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	118950086	118950086	G	A	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	missense	c.1069	p.V357M	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				78	0	0	22	10	31.25
ASTN2	0	genome.wustl.edu	37	9	119188190	119188190	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	119188190	119188190	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	silent	c.3960	p.T1320	0.018	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				43	0	0	38	22	36.6667
ASTN2	0	genome.wustl.edu	37	9	119903695	119903695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	119903695	119903695	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.1078	p.R360C	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				74	0	0	43	12	21.8182
ASTN2	0	genome.wustl.edu	37	9	120053672	120053672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	120053672	120053672	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.563	p.A188V	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				108	0	0	67	36	34.9515
TLR4	0	genome.wustl.edu	37	9	120476762	120476762	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	120476762	120476762	T	C	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.2356	p.Y786H	1.000	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				119	0	0	58	42	42
PSMD5	0	genome.wustl.edu	37	9	123595605	123595605	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	123595605	123595605	G	T	SNP	PSMD5	ENST00000210313	human	ensembl	74_37	-1	known	silent	c.303	p.I101	0.993	pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold	pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold	-	no_errors	PSMD5	HGNC	ENSG00000095261				157	0	0	61	46	42.9907
TRAF1	0	genome.wustl.edu	37	9	123671571	123671571	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	123671571	123671571	C	T	SNP	TRAF1	ENST00000373887	human	ensembl	74_37	-1	known	silent	c.969	p.S323	0.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	-	no_errors	TRAF1	HGNC	ENSG00000056558				349	0	0	194	140	41.9162
C5	0	genome.wustl.edu	37	9	123783955	123783955	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	123783955	123783955	C	T	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	silent	c.1134	p.S378	0.000	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804				145	0	0	57	29	33.7209
DAB2IP	0	genome.wustl.edu	37	9	124535231	124535231	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	124535231	124535231	C	A	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	silent	c.2424	p.T808	1.000	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				64	0	0	35	13	27.0833
OR1B1	0	genome.wustl.edu	37	9	125391289	125391289	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	125391289	125391289	C	T	SNP	OR1B1	ENST00000304833	human	ensembl	74_37	-1	known	missense	c.526	p.G176S	0.034	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1B1	HGNC	ENSG00000171484				59	0	0	16	11	40.7407
OR1K1	0	genome.wustl.edu	37	9	125562731	125562731	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	125562731	125562731	A	G	SNP	OR1K1	ENST00000277309	human	ensembl	74_37	+1	known	silent	c.330	p.V110	0.005	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1K1	HGNC	ENSG00000165204				102	0	0	59	32	35.1648
RC3H2	0	genome.wustl.edu	37	9	125652521	125652521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	125652521	125652521	C	T	SNP	RC3H2	ENST00000471874	human	ensembl	74_37	-1	known	missense	c.653	p.R218Q	0.029	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586				18	0	0	11	4	26.6667
ZBTB6	0	genome.wustl.edu	37	9	125674193	125674193	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	125674193	125674193	A	G	SNP	ZBTB6	ENST00000373659	human	ensembl	74_37	-1	known	silent	c.159	p.A53	0.988	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB6	HGNC	ENSG00000186130				137	0	0	54	31	36.4706
RABGAP1	0	genome.wustl.edu	37	9	125761008	125761008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	125761008	125761008	G	A	SNP	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	missense	c.1337	p.R446H	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				102	0	0	48	28	36.8421
RABGAP1	0	genome.wustl.edu	37	9	125839022	125839022	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	125839022	125839022	A	T	SNP	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	missense	c.2405	p.E802V	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				44	0	0	11	6	35.2941
CRB2	0	genome.wustl.edu	37	9	126134517	126134517	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	126134517	126134517	G	A	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	missense	c.2498	p.C833Y	1.000	pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204				91	0	0	50	28	35.8974
LHX2	0	genome.wustl.edu	37	9	126777648	126777648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	126777648	126777648	G	A	SNP	LHX2	ENST00000373615	human	ensembl	74_37	+1	known	missense	c.571	p.A191T	0.068	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX2	HGNC	ENSG00000106689				41	0	0	58	4	6.45161
MAPKAP1	0	genome.wustl.edu	37	9	128246828	128246828	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	128246828	128246828	C	T	SNP	MAPKAP1	ENST00000265960	human	ensembl	74_37	-1	known	silent	c.1101	p.S367	0.010	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487				83	0	0	50	4	7.40741
MVB12B	0	genome.wustl.edu	37	9	129102803	129102803	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	129102803	129102803	C	A	SNP	MVB12B	ENST00000361171	human	ensembl	74_37	+1	known	missense	c.98	p.P33H	1.000	NULL	pfam_FAM125	-	no_errors	MVB12B	HGNC	ENSG00000196814				125	0	0	51	26	33.7662
ZBTB43	0	genome.wustl.edu	37	9	129595580	129595580	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	129595580	129595580	C	T	SNP	ZBTB43	ENST00000373457	human	ensembl	74_37	+1	known	silent	c.792	p.Y264	0.013	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155				37	0	0	14	15	51.7241
GARNL3	0	genome.wustl.edu	37	9	130155573	130155573	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	130155573	130155573	G	A	SNP	GARNL3	ENST00000496711	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	GARNL3	HGNC	ENSG00000136895				56	0	0	33	4	10.8108
SLC2A8	0	genome.wustl.edu	37	9	130167203	130167203	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	130167203	130167203	A	G	SNP	SLC2A8	ENST00000373371	human	ensembl	74_37	+1	known	silent	c.1083	p.A361	0.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A8	HGNC	ENSG00000136856				89	0	0	55	23	29.4872
STXBP1	0	genome.wustl.edu	37	9	130438929	130438929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	130438929	130438929	C	T	SNP	STXBP1	ENST00000373299	human	ensembl	74_37	+1	known	missense	c.1256	p.T419M	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854				34	0	0	23	12	34.2857
SH2D3C	0	genome.wustl.edu	37	9	130507283	130507283	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	130507283	130507283	C	T	SNP	SH2D3C	ENST00000314830	human	ensembl	74_37	-1	known	missense	c.1360	p.G454R	0.636	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	SH2D3C	HGNC	ENSG00000095370				81	0	0	60	35	36.8421
FPGS	0	genome.wustl.edu	37	9	130566653	130566653	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	130566653	130566653	G	T	SNP	FPGS	ENST00000373247	human	ensembl	74_37	+1	known	missense	c.228	p.L76F	1.000	superfamily_Mur_ligase_cen,tigrfam_Folylpolyglutamate_synth	superfamily_Mur_ligase_cen,superfamily_Mur_ligase_C,tigrfam_Folylpolyglutamate_synth	-	no_errors	FPGS	HGNC	ENSG00000136877				71	0	0	36	19	34.5455
ST6GALNAC6	0	genome.wustl.edu	37	9	130649057	130649057	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	130649057	130649057	G	A	SNP	ST6GALNAC6	ENST00000291839	human	ensembl	74_37	-1	known	missense	c.823	p.R275C	1.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC6	HGNC	ENSG00000160408				56	0	0	23	28	54.902
PKN3	0	genome.wustl.edu	37	9	131477738	131477738	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	131477738	131477738	A	G	SNP	PKN3	ENST00000291906	human	ensembl	74_37	+1	known	missense	c.1807	p.S603G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN3	HGNC	ENSG00000160447				61	0	0	37	26	41.2698
ZER1	0	genome.wustl.edu	37	9	131516110	131516110	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	131516110	131516110	T	C	SNP	ZER1	ENST00000291900	human	ensembl	74_37	-1	known	missense	c.287	p.D96G	1.000	NULL	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ZER1	HGNC	ENSG00000160445				13	0	0	13	7	35
C9orf114	0	genome.wustl.edu	37	9	131588873	131588873	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	131588873	131588873	T	C	SNP	C9orf114	ENST00000361256	human	ensembl	74_37	-1	known	missense	c.404	p.K135R	1.000	pfam_Put_MeTrfase	pfam_Put_MeTrfase,superfamily_NA-bd_OB-fold	-	no_errors	C9orf114	HGNC	ENSG00000198917				48	0	0	20	15	42.8571
NUP188	0	genome.wustl.edu	37	9	131715088	131715088	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	131715088	131715088	C	T	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	nonsense	c.124	p.R42*	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				83	0	0	47	22	31.8841
NUP188	0	genome.wustl.edu	37	9	131733113	131733113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	131733113	131733113	G	A	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.989	p.R330H	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				112	0	0	64	39	37.8641
MPDZ	0	genome.wustl.edu	37	9	13183417	13183417	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	13183417	13183417	C	A	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.2649	p.K883N	1.000	NULL	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				29	0	0	13	6	31.5789
TOR1B	0	genome.wustl.edu	37	9	132569623	132569623	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	132569623	132569623	G	A	SNP	TOR1B	ENST00000259339	human	ensembl	74_37	+1	known	missense	c.622	p.A208T	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	pfam_Torsin,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	-	no_errors	TOR1B	HGNC	ENSG00000136816				165	0	0	90	35	28
PPAPDC3	0	genome.wustl.edu	37	9	134183546	134183546	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	134183546	134183546	G	A	SNP	PPAPDC3	ENST00000372264	human	ensembl	74_37	+1	known	missense	c.688	p.V230M	0.986	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAPDC3	HGNC	ENSG00000160539				43	0	0	34	6	15
PRRC2B	0	genome.wustl.edu	37	9	134323116	134323116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	134323116	134323116	C	T	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.1045	p.R349W	0.998	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				39	0	0	20	10	33.3333
RAPGEF1	0	genome.wustl.edu	37	9	134473641	134473641	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	134473641	134473641	T	G	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	missense	c.2054	p.E685A	1.000	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263				36	0	0	25	14	35.8974
NTNG2	0	genome.wustl.edu	37	9	135073695	135073695	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	135073695	135073695	T	C	SNP	NTNG2	ENST00000360670	human	ensembl	74_37	+1	known	missense	c.556	p.S186P	0.997	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358				46	0	0	31	26	45.614
SETX	0	genome.wustl.edu	37	9	135153636	135153636	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	135153636	135153636	C	A	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.6663	p.Q2221H	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				117	0	0	79	11	12.2222
AK8	0	genome.wustl.edu	37	9	135690031	135690031	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	135690031	135690031	T	G	SNP	AK8	ENST00000298545	human	ensembl	74_37	-1	known	missense	c.973	p.M325L	0.000	pfam_Adenylate_kin,superfamily_P-loop_NTPase	pfam_Adenylate_kin,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin	-	no_errors	AK8	HGNC	ENSG00000165695				61	0	0	45	24	34.7826
GTF3C5	0	genome.wustl.edu	37	9	135919143	135919143	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	135919143	135919143	G	A	SNP	GTF3C5	ENST00000372108	human	ensembl	74_37	+1	known	silent	c.402	p.V134	0.987	pfam_TF_IIIC_su-5	pfam_TF_IIIC_su-5	-	no_errors	GTF3C5	HGNC	ENSG00000148308				97	0	0	63	13	17.1053
CEL	0	genome.wustl.edu	37	9	135945943	135945943	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	135945943	135945943	A	G	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	missense	c.1391	p.Y464C	0.999	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835				131	0	0	65	50	43.4783
GBGT1	0	genome.wustl.edu	37	9	136030623	136030623	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	136030623	136030623	G	A	SNP	GBGT1	ENST00000372040	human	ensembl	74_37	-1	known	nonsense	c.301	p.Q101*	0.811	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GBGT1	HGNC	ENSG00000148288				44	0	0	26	17	39.5349
MED22	0	genome.wustl.edu	37	9	136208462	136208462	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	136208462	136208462	G	T	SNP	MED22	ENST00000343730	human	ensembl	74_37	-1	known	missense	c.496	p.L166I	1.000	NULL	pfam_Mediator_Med22	-	no_errors	MED22	HGNC	ENSG00000148297				34	0	0	28	13	31.7073
ADAMTS13	0	genome.wustl.edu	37	9	136305465	136305465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	136305465	136305465	C	T	SNP	ADAMTS13	ENST00000371929	human	ensembl	74_37	+1	known	missense	c.1787	p.A596V	0.998	NULL	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB_dom,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				90	0	0	64	17	20.9877
ADAMTSL2	0	genome.wustl.edu	37	9	136406103	136406103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	136406103	136406103	G	A	SNP	ADAMTSL2	ENST00000393061	human	ensembl	74_37	+1	known	missense	c.989	p.R330H	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859				37	0	0	29	9	23.6842
SARDH	0	genome.wustl.edu	37	9	136573438	136573438	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	136573438	136573438	G	A	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	missense	c.1441	p.R481C	0.999	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				101	0	0	68	42	38.1818
VAV2	0	genome.wustl.edu	37	9	136726543	136726543	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	136726543	136726543	C	T	SNP	VAV2	ENST00000371850	human	ensembl	74_37	-1	known	silent	c.333	p.A111	0.109	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293				32	0	0	17	10	37.037
BRD3	0	genome.wustl.edu	37	9	136913300	136913300	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	136913300	136913300	C	T	SNP	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	missense	c.991	p.A331T	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				26	0	0	15	19	55.8824
FCN2	0	genome.wustl.edu	37	9	137775200	137775200	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	137775200	137775200	C	T	SNP	FCN2	ENST00000291744	human	ensembl	74_37	+1	known	silent	c.267	p.N89	0.976	pfam_Collagen	pfam_Fibrinogen_a/b/g_C_dom,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FCN2	HGNC	ENSG00000160339				58	0	0	31	21	40.3846
MRPS2	0	genome.wustl.edu	37	9	138393669	138393669	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	138393669	138393669	C	T	SNP	MRPS2	ENST00000472852	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MRPS2	HGNC	ENSG00000122140				101	0	0	37	35	48.6111
KCNT1	0	genome.wustl.edu	37	9	138678159	138678159	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	138678159	138678159	C	T	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	silent	c.3294	p.D1098	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147				9	0	0	21	4	16
UBAC1	0	genome.wustl.edu	37	9	138830129	138830129	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	138830129	138830129	A	G	SNP	UBAC1	ENST00000371756	human	ensembl	74_37	-1	known	silent	c.1041	p.F347	0.992	superfamily_UBA-like	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAC1	HGNC	ENSG00000130560				88	0	0	74	10	11.9048
LCN6	0	genome.wustl.edu	37	9	139641987	139641987	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	139641987	139641987	A	G	SNP	LCN6	ENST00000341206	human	ensembl	74_37	-1	known	missense	c.119	p.V40A	0.572	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	-	no_errors	LCN6	HGNC	ENSG00000267206				59	0	0	36	24	40
MAMDC4	0	genome.wustl.edu	37	9	139754412	139754412	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	139754412	139754412	C	T	SNP	MAMDC4	ENST00000445819	human	ensembl	74_37	+1	known	silent	c.3505	p.L1169	0.885	NULL	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	MAMDC4	HGNC	ENSG00000177943				15	0	0	23	16	41.0256
FBXW5	0	genome.wustl.edu	37	9	139836473	139836473	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	139836473	139836473	G	A	SNP	FBXW5	ENST00000487794	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FBXW5	HGNC	ENSG00000159069				18	0	0	9	7	43.75
FBXW5	0	genome.wustl.edu	37	9	139836876	139836876	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	139836876	139836876	T	C	SNP	FBXW5	ENST00000325285	human	ensembl	74_37	-1	known	missense	c.718	p.K240E	1.000	superfamily_Quinoprot_gluc/sorb_DH	pfam_WD40_repeat,pfam_F-box_dom,superfamily_Quinoprot_gluc/sorb_DH,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW5	HGNC	ENSG00000159069				65	0	0	30	19	38.7755
ABCA2	0	genome.wustl.edu	37	9	139917374	139917374	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	139917374	139917374	G	T	SNP	ABCA2	ENST00000492260	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	ABCA2	HGNC	ENSG00000107331				10	0	0	7	4	36.3636
UAP1L1	0	genome.wustl.edu	37	9	139973063	139973063	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	139973063	139973063	C	T	SNP	UAP1L1	ENST00000409858	human	ensembl	74_37	+1	known	silent	c.604	p.L202	1.000	pfam_UDPGP_trans	pfam_UDPGP_trans	-	no_errors	UAP1L1	HGNC	ENSG00000197355				62	0	0	33	33	50
FAM166A	0	genome.wustl.edu	37	9	140139908	140139908	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	140139908	140139908	G	A	SNP	FAM166A	ENST00000344774	human	ensembl	74_37	-1	known	silent	c.373	p.L125	0.000	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166A	HGNC	ENSG00000188163				120	0	0	57	53	48.1818
EXD3	0	genome.wustl.edu	37	9	140246528	140246528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	140246528	140246528	G	A	SNP	EXD3	ENST00000340951	human	ensembl	74_37	-1	known	missense	c.1163	p.A388V	0.000	superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_Mut7-C_RNAse_dom,pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD3	HGNC	ENSG00000187609				31	0	0	15	12	44.4444
NSMF	0	genome.wustl.edu	37	9	140347536	140347536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	140347536	140347536	G	A	SNP	NSMF	ENST00000371475	human	ensembl	74_37	-1	known	missense	c.1019	p.T340I	0.219	NULL	superfamily_P-loop_NTPase	-	no_errors	NSMF	HGNC	ENSG00000165802				50	0	0	47	6	11.3208
PNPLA7	0	genome.wustl.edu	37	9	140372528	140372528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	140372528	140372528	G	A	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.2840	p.T947M	1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				8	0	0	5	3	37.5
PNPLA7	0	genome.wustl.edu	37	9	140379167	140379167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	140379167	140379167	G	A	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.2219	p.T740M	0.000	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				26	0	0	11	6	35.2941
PNPLA7	0	genome.wustl.edu	37	9	140396151	140396151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	140396151	140396151	G	A	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.1502	p.A501V	0.424	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				38	0	0	21	9	30
EHMT1	0	genome.wustl.edu	37	9	140707883	140707883	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	140707883	140707883	C	T	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	silent	c.3081	p.N1027	0.634	pfam_Pre-SET_dom,smart_Pre-SET_Zn-bd_sub	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				31	0	0	15	9	37.5
CACNA1B	0	genome.wustl.edu	37	9	140852063	140852063	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	140852063	140852063	G	A	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	silent	c.1260	p.A420	0.264	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				10	0	0	10	4	28.5714
CCDC171	0	genome.wustl.edu	37	9	15744460	15744460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	15744460	15744460	G	A	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	missense	c.2239	p.A747T	1.000	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				226	0	0	141	11	7.23684
BNC2	0	genome.wustl.edu	37	9	16436034	16436034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	16436034	16436034	G	A	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.2158	p.R720W	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				129	0	0	52	26	33.3333
CNTLN	0	genome.wustl.edu	37	9	17464498	17464498	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	17464498	17464498	A	G	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.3408	p.I1136M	0.952	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				152	0	0	47	35	42.6829
ADAMTSL1	0	genome.wustl.edu	37	9	18721613	18721613	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	18721613	18721613	C	T	SNP	ADAMTSL1	ENST00000380548	human	ensembl	74_37	+1	novel	silent	c.1956	p.R652	0.994	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				109	0	0	43	53	55.2083
PLIN2	0	genome.wustl.edu	37	9	19116264	19116264	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	19116264	19116264	A	G	SNP	PLIN2	ENST00000276914	human	ensembl	74_37	-1	known	silent	c.1296	p.S432	0.057	NULL	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN2	HGNC	ENSG00000147872				95	0	0	44	25	36.2319
SMARCA2	0	genome.wustl.edu	37	9	2039678	2039678	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	2039678	2039678	A	G	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.568	p.K190E	1.000	pfam_Gln-Leu-Gln_QLQ,smart_Gln-Leu-Gln_QLQ	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				90	0	0	57	27	32.1429
FOCAD	0	genome.wustl.edu	37	9	20885257	20885257	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	20885257	20885257	T	C	SNP	FOCAD	ENST00000603552	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FOCAD	HGNC	ENSG00000188352				78	0	0	33	18	35.2941
FOCAD	0	genome.wustl.edu	37	9	20990121	20990121	+	Splice_Site	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	20990121	20990121	G	T	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	splice_site	c.5005-1	e41-1	1.000	-	-	-	no_errors	FOCAD	HGNC	ENSG00000188352				80	0	0	30	18	37.5
IFNW1	0	genome.wustl.edu	37	9	21141078	21141078	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	21141078	21141078	C	T	SNP	IFNW1	ENST00000380229	human	ensembl	74_37	-1	known	nonsense	c.492	p.W164*	1.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNW1	HGNC	ENSG00000177047				116	0	0	45	15	25
SMARCA2	0	genome.wustl.edu	37	9	2191331	2191331	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	2191331	2191331	G	T	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.4660	p.G1554C	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				81	0	0	40	25	38.4615
CDKN2A	0	genome.wustl.edu	37	9	21970981	21970981	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	21970981	21970981	A	T	SNP	CDKN2A	ENST00000446177	human	ensembl	74_37	-1	known	missense	c.377	p.V126D	0.581	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2A	HGNC	ENSG00000147889				45	0	0	29	19	39.5833
LRRC19	0	genome.wustl.edu	37	9	26998170	26998170	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	26998170	26998170	T	A	SNP	LRRC19	ENST00000380055	human	ensembl	74_37	-1	known	missense	c.151	p.I51L	0.964	NULL	smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC19	HGNC	ENSG00000184434				65	0	0	28	18	39.1304
KCNV2	0	genome.wustl.edu	37	9	2718806	2718806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	2718806	2718806	C	T	SNP	KCNV2	ENST00000382082	human	ensembl	74_37	+1	known	missense	c.1067	p.T356M	0.845	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263				122	0	0	74	41	35.6522
AQP3	0	genome.wustl.edu	37	9	33442199	33442199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	33442199	33442199	G	A	SNP	AQP3	ENST00000297991	human	ensembl	74_37	-1	known	missense	c.721	p.H241Y	0.086	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_3,prints_MIP,tigrfam_MIP	-	no_errors	AQP3	HGNC	ENSG00000165272				80	0	0	56	17	23.2877
PTENP1	0	genome.wustl.edu	37	9	33676757	33676757	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	33676757	33676757	C	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				30	0	0	17	9	34.6154
DCAF12	0	genome.wustl.edu	37	9	34098434	34098434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	34098434	34098434	C	T	SNP	DCAF12	ENST00000361264	human	ensembl	74_37	-1	known	missense	c.683	p.R228Q	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12	HGNC	ENSG00000198876				121	0	0	66	40	37.7358
DNAI1	0	genome.wustl.edu	37	9	34500820	34500820	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	34500820	34500820	C	A	SNP	DNAI1	ENST00000242317	human	ensembl	74_37	+1	known	silent	c.1002	p.S334	0.359	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DNAI1	HGNC	ENSG00000122735				52	0	0	34	6	15
CNTFR	0	genome.wustl.edu	37	9	34568917	34568917	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	34568917	34568917	G	A	SNP	CNTFR	ENST00000351266	human	ensembl	74_37	-1	known	silent	c.63	p.Y21	0.988	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTFR	HGNC	ENSG00000122756				13	0	0	8	3	27.2727
FAM214B	0	genome.wustl.edu	37	9	35107521	35107521	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	35107521	35107521	G	A	SNP	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	missense	c.751	p.P251S	0.865	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238				155	0	0	132	40	23.2558
RUSC2	0	genome.wustl.edu	37	9	35546612	35546612	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	35546612	35546612	G	T	SNP	RUSC2	ENST00000361226	human	ensembl	74_37	+1	known	missense	c.94	p.G32W	0.940	NULL	pfam_Run,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC2	HGNC	ENSG00000198853				140	0	0	81	43	34.6774
FAM166B	0	genome.wustl.edu	37	9	35562663	35562663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	35562663	35562663	C	T	SNP	FAM166B	ENST00000447837	human	ensembl	74_37	-1	known	missense	c.527	p.R176Q	0.018	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166B	HGNC	ENSG00000215187				37	0	0	22	15	40.5405
CA9	0	genome.wustl.edu	37	9	35676366	35676366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	35676366	35676366	G	A	SNP	CA9	ENST00000378357	human	ensembl	74_37	+1	known	missense	c.820	p.V274M	0.965	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA9	HGNC	ENSG00000107159				193	0	0	93	68	42.236
TMEM8B	0	genome.wustl.edu	37	9	35846850	35846850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	35846850	35846850	C	T	SNP	TMEM8B	ENST00000377988	human	ensembl	74_37	+1	known	missense	c.677	p.A226V	1.000	NULL	pfam_DUF3522	-	no_errors	TMEM8B	HGNC	ENSG00000137103				149	0	0	49	35	41.6667
GNE	0	genome.wustl.edu	37	9	36246457	36246457	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	36246457	36246457	G	A	SNP	GNE	ENST00000396594	human	ensembl	74_37	-1	known	nonsense	c.280	p.Q94*	1.000	pfam_UDP_GlcNAc_Epimerase_2,tigrfam_UDP-GlcNAc_Epase	pfam_UDP_GlcNAc_Epimerase_2,pfam_ROK,prints_Hexokinase,tigrfam_UDP-GlcNAc_Epase	-	no_errors	GNE	HGNC	ENSG00000159921				83	0	0	26	20	43.4783
ZBTB5	0	genome.wustl.edu	37	9	37442190	37442190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	37442190	37442190	G	A	SNP	ZBTB5	ENST00000307750	human	ensembl	74_37	-1	known	missense	c.359	p.T120M	0.997	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795				134	0	0	58	43	42.5743
POLR1E	0	genome.wustl.edu	37	9	37503056	37503056	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	37503056	37503056	A	G	SNP	POLR1E	ENST00000377792	human	ensembl	74_37	+1	known	missense	c.1303	p.K435E	0.990	pfam_RNA_pol-assoc_fac_A49-like	pfam_RNA_pol-assoc_fac_A49-like	-	no_errors	POLR1E	HGNC	ENSG00000137054				156	0	0	134	22	14.1026
FBXO10	0	genome.wustl.edu	37	9	37521665	37521665	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	37521665	37521665	C	T	SNP	FBXO10	ENST00000432825	human	ensembl	74_37	-1	known	missense	c.2101	p.A701T	0.989	smart_Carb-bd_sugar_hydrolysis-dom	pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,pfscan_F-box_dom,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO10	HGNC	ENSG00000147912				50	0	0	51	6	10.5263
ALDH1B1	0	genome.wustl.edu	37	9	38396150	38396150	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	38396150	38396150	C	T	SNP	ALDH1B1	ENST00000377698	human	ensembl	74_37	+1	known	silent	c.405	p.Y135	0.906	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1B1	HGNC	ENSG00000137124				171	0	0	96	79	45.1429
GLIS3	0	genome.wustl.edu	37	9	4117916	4117916	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	4117916	4117916	A	G	SNP	GLIS3	ENST00000381971	human	ensembl	74_37	-1	known	missense	c.1562	p.I521T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS3	HGNC	ENSG00000107249				102	0	0	54	38	41.3043
KGFLP2	0	genome.wustl.edu	37	9	41963899	41963899	+	RNA	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	41963899	41963899	G	T	SNP	KGFLP2	ENST00000454645	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-204M4.2	Clone_based_vega_gene	ENSG00000204837				166	0	0	86	15	14.8515
FOXD4L5	0	genome.wustl.edu	37	9	70177685	70177685	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	70177685	70177685	G	T	SNP	FOXD4L5	ENST00000377420	human	ensembl	74_37	-1	known	missense	c.299	p.S100Y	0.011	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L5	HGNC	ENSG00000204779				182	0	0	189	43	18.5345
PGM5	0	genome.wustl.edu	37	9	70993152	70993152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	70993152	70993152	C	T	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.299	p.S100L	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				49	0	0	61	24	28.2353
TJP2	0	genome.wustl.edu	37	9	71854958	71854958	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	71854958	71854958	G	A	SNP	TJP2	ENST00000539225	human	ensembl	74_37	+1	known	missense	c.2554	p.V852I	0.979	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139				62	0	0	23	15	39.4737
TJP2	0	genome.wustl.edu	37	9	71869217	71869217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	71869217	71869217	G	A	SNP	TJP2	ENST00000539225	human	ensembl	74_37	+1	known	missense	c.3593	p.R1198H	1.000	NULL	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139				130	0	0	92	10	9.80392
TRPM3	0	genome.wustl.edu	37	9	73151350	73151350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	73151350	73151350	G	A	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.4724	p.T1575I	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				109	0	0	55	23	29.4872
GCNT1	0	genome.wustl.edu	37	9	79117265	79117265	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	79117265	79117265	C	A	SNP	GCNT1	ENST00000480311	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GCNT1	HGNC	ENSG00000187210				51	0	0	32	2	5.88235
PRUNE2	0	genome.wustl.edu	37	9	79259732	79259732	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	79259732	79259732	G	A	SNP	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	missense	c.7577	p.T2526I	0.998	pfam_Bcl2-/adenovirus-E1B	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				53	0	0	33	23	41.0714
DMRT1	0	genome.wustl.edu	37	9	841877	841877	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	841877	841877	G	A	SNP	DMRT1	ENST00000382276	human	ensembl	74_37	+1	known	silent	c.39	p.P13	0.000	NULL	pfam_DM_DNA-bd,pfam_DMRT1-like,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT1	HGNC	ENSG00000137090				33	0	0	28	2	6.66667
TLE1	0	genome.wustl.edu	37	9	84208020	84208020	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	84208020	84208020	T	C	SNP	TLE1	ENST00000376499	human	ensembl	74_37	-1	known	missense	c.1501	p.T501A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE1	HGNC	ENSG00000196781				167	0	0	128	14	9.85915
RASEF	0	genome.wustl.edu	37	9	85611951	85611951	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	85611951	85611951	T	C	SNP	RASEF	ENST00000376447	human	ensembl	74_37	-1	known	missense	c.1896	p.I632M	0.820	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_Vinculin/catenin,smart_EF_hand_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_hand_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105				59	0	0	26	18	40.9091
GOLM1	0	genome.wustl.edu	37	9	88692475	88692475	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	88692475	88692475	C	T	SNP	GOLM1	ENST00000388711	human	ensembl	74_37	-1	known	missense	c.161	p.R54H	1.000	NULL	NULL	-	no_errors	GOLM1	HGNC	ENSG00000135052				145	1	0.684932	66	44	40
SPATA31C1	0	genome.wustl.edu	37	9	90535893	90535893	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	90535893	90535893	C	T	SNP	SPATA31C1	ENST00000602681	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SPATA31C1	HGNC	ENSG00000230246				425	0	0	216	91	29.6417
WNK2	0	genome.wustl.edu	37	9	96030326	96030326	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	96030326	96030326	G	A	SNP	WNK2	ENST00000297954	human	ensembl	74_37	+1	known	missense	c.3892	p.A1298T	0.972	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK2	HGNC	ENSG00000165238				23	0	0	11	8	42.1053
ZNF169	0	genome.wustl.edu	37	9	97062526	97062526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	97062526	97062526	G	A	SNP	ZNF169	ENST00000395395	human	ensembl	74_37	+1	known	missense	c.686	p.S229N	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787				67	0	0	40	21	34.4262
FBP2	0	genome.wustl.edu	37	9	97346939	97346939	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	97346939	97346939	C	T	SNP	FBP2	ENST00000375337	human	ensembl	74_37	-1	known	missense	c.346	p.V116I	1.000	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPtase,prints_SBPase	-	no_errors	FBP2	HGNC	ENSG00000130957				57	0	0	44	4	8.33333
PTCH1	0	genome.wustl.edu	37	9	98231260	98231260	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	98231260	98231260	A	G	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.2023	p.Y675H	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				138	0	0	85	46	35.1145
CSTF2	0	genome.wustl.edu	37	X	100077249	100077249	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	100077249	100077249	C	T	SNP	CSTF2	ENST00000415585	human	ensembl	74_37	+1	known	silent	c.147	p.Y49	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2	HGNC	ENSG00000101811				51	0	0	20	19	48.7179
XKRX	0	genome.wustl.edu	37	X	100183088	100183088	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	100183088	100183088	T	C	SNP	XKRX	ENST00000328526	human	ensembl	74_37	-1	known	missense	c.245	p.Y82C	0.999	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKRX	HGNC	ENSG00000182489				158	0	0	52	47	47.4747
BTK	0	genome.wustl.edu	37	X	100613407	100613407	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	100613407	100613407	T	C	SNP	BTK	ENST00000308731	human	ensembl	74_37	-1	known	missense	c.993	p.I331M	0.993	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671				190	1	0.52356	68	54	44.2623
GLA	0	genome.wustl.edu	37	X	100653081	100653081	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	100653081	100653081	T	C	SNP	GLA	ENST00000218516	human	ensembl	74_37	-1	known	missense	c.1006	p.N336D	0.000	NULL	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	GLA	HGNC	ENSG00000102393				92	0	0	38	25	39.6825
GPRASP1	0	genome.wustl.edu	37	X	101911431	101911431	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	101911431	101911431	T	A	SNP	GPRASP1	ENST00000361600	human	ensembl	74_37	+1	known	missense	c.2590	p.S864T	0.014	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932				160	1	0.621118	80	88	52.381
RAB40A	0	genome.wustl.edu	37	X	102755236	102755236	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	102755236	102755236	A	G	SNP	RAB40A	ENST00000304236	human	ensembl	74_37	-1	known	missense	c.449	p.V150A	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_SOCS_C,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,smart_SOCS_C,prints_Small_GTPase,pfscan_SOCS_C,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB40A	HGNC	ENSG00000172476				121	0	0	65	34	34.3434
IL1RAPL2	0	genome.wustl.edu	37	X	104512145	104512145	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	104512145	104512145	A	G	SNP	IL1RAPL2	ENST00000344799	human	ensembl	74_37	+1	known	silent	c.618	p.E206	0.996	smart_Ig_sub,pfscan_Ig-like_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ	-	no_errors	IL1RAPL2	HGNC	ENSG00000189108				68	0	0	28	18	39.1304
FRMPD3	0	genome.wustl.edu	37	X	106845523	106845523	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	106845523	106845523	G	T	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	silent	c.4353	p.L1451	0.995	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234				86	0	0	41	25	37.8788
ALG13	0	genome.wustl.edu	37	X	110951411	110951411	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	110951411	110951411	T	C	SNP	ALG13	ENST00000251943	human	ensembl	74_37	+1	known	silent	c.228	p.P76	0.037	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901				91	0	0	38	31	44.9275
TRPC5	0	genome.wustl.edu	37	X	111078168	111078168	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	111078168	111078168	T	C	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.1877	p.N626S	1.000	prints_TRPC_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				289	0	0	189	16	7.80488
HTR2C	0	genome.wustl.edu	37	X	114141413	114141413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	114141413	114141413	C	T	SNP	HTR2C	ENST00000276198	human	ensembl	74_37	+1	known	missense	c.812	p.T271M	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2C_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246				241	0	0	145	93	39.0756
ENSG00000228532	0	genome.wustl.edu	37	X	114953402	114953402	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	114953402	114953402	G	A	SNP	ENSG00000228532	ENST00000449327	human	ensembl	74_37	-1	novel	nonsense	c.148	p.R50*	0.673	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	RP1-241P17.4	Clone_based_vega_gene	ENSG00000228532				103	0	0	94	5	5.05051
MSL3	0	genome.wustl.edu	37	X	11778981	11778981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	11778981	11778981	C	T	SNP	MSL3	ENST00000312196	human	ensembl	74_37	+1	known	missense	c.307	p.R103C	1.000	superfamily_Chromodomain-like	pfam_MRG_dom,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302				29	0	0	11	4	26.6667
ZCCHC12	0	genome.wustl.edu	37	X	117959764	117959764	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	117959764	117959764	G	T	SNP	ZCCHC12	ENST00000310164	human	ensembl	74_37	+1	known	missense	c.557	p.R186M	0.425	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460				184	0	0	76	47	38.2114
SEPT6	0	genome.wustl.edu	37	X	118763453	118763453	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	118763453	118763453	G	A	SNP	SEPT6	ENST00000394617	human	ensembl	74_37	-1	known	missense	c.1198	p.R400C	1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT6	HGNC	ENSG00000125354				124	0	0	68	33	32.6733
TMEM255A	0	genome.wustl.edu	37	X	119394855	119394855	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	119394855	119394855	G	T	SNP	TMEM255A	ENST00000309720	human	ensembl	74_37	-1	known	missense	c.920	p.P307H	1.000	NULL	NULL	-	no_errors	TMEM255A	HGNC	ENSG00000125355				79	0	0	30	31	50.8197
CUL4B	0	genome.wustl.edu	37	X	119674406	119674406	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	119674406	119674406	G	A	SNP	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	silent	c.1509	p.S503	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290				38	0	0	21	8	27.5862
GRIA3	0	genome.wustl.edu	37	X	122551644	122551644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	122551644	122551644	C	T	SNP	GRIA3	ENST00000541091	human	ensembl	74_37	+1	known	missense	c.1844	p.A615V	0.075	smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd	-	no_errors	GRIA3	HGNC	ENSG00000125675				109	1	0.909091	38	25	39.6825
THOC2	0	genome.wustl.edu	37	X	122755187	122755187	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	122755187	122755187	A	G	SNP	THOC2	ENST00000245838	human	ensembl	74_37	-1	known	missense	c.4037	p.V1346A	0.111	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676				146	0	0	46	41	47.1264
TENM1	0	genome.wustl.edu	37	X	123805641	123805641	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	123805641	123805641	C	A	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	nonsense	c.1060	p.G354*	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				223	0	0	100	46	31.5068
ELF4	0	genome.wustl.edu	37	X	129203502	129203502	+	Silent	SNP	A	A	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	129203502	129203502	A	C	SNP	ELF4	ENST00000308167	human	ensembl	74_37	-1	known	silent	c.960	p.S320	0.115	NULL	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF4	HGNC	ENSG00000102034				173	1	0.574713	90	60	40
TLR8	0	genome.wustl.edu	37	X	12937486	12937486	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	12937486	12937486	A	G	SNP	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	missense	c.327	p.I109M	0.000	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				198	1	0.502513	117	84	41.791
ENSG00000229702	0	genome.wustl.edu	37	X	129629169	129629169	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	129629169	129629169	C	T	SNP	ENSG00000229702	ENST00000458525	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.754	-	-	-	no_errors	RP1-274L7.1	Clone_based_vega_gene	ENSG00000229702				91	0	0	33	25	43.1034
IGSF1	0	genome.wustl.edu	37	X	130409637	130409637	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	130409637	130409637	T	C	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.3014	p.Y1005C	0.973	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				160	0	0	71	46	39.3162
HS6ST2	0	genome.wustl.edu	37	X	132090883	132090883	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	132090883	132090883	C	T	SNP	HS6ST2	ENST00000521489	human	ensembl	74_37	-1	known	silent	c.900	p.V300	1.000	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST2	HGNC	ENSG00000171004				9	0	0	5	3	37.5
HS6ST2	0	genome.wustl.edu	37	X	132090966	132090966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	132090966	132090966	G	A	SNP	HS6ST2	ENST00000521489	human	ensembl	74_37	-1	known	missense	c.817	p.R273W	0.999	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST2	HGNC	ENSG00000171004				17	0	0	13	8	38.0952
USP26	0	genome.wustl.edu	37	X	132161217	132161217	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	132161217	132161217	C	T	SNP	USP26	ENST00000370832	human	ensembl	74_37	-1	known	silent	c.1032	p.R344	0.001	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				109	0	0	32	26	44.8276
SAGE1	0	genome.wustl.edu	37	X	134990644	134990644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	134990644	134990644	G	A	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	missense	c.1309	p.V437I	0.001	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				185	0	0	77	38	33.0435
SLC9A6	0	genome.wustl.edu	37	X	135067951	135067951	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	135067951	135067951	G	A	SNP	SLC9A6	ENST00000370695	human	ensembl	74_37	+1	known	missense	c.290	p.R97H	1.000	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A6	HGNC	ENSG00000198689				209	1	0.47619	147	100	40.4858
FHL1	0	genome.wustl.edu	37	X	135291440	135291440	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	135291440	135291440	A	G	SNP	FHL1	ENST00000345434	human	ensembl	74_37	+1	known	missense	c.727	p.K243E	1.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL1	HGNC	ENSG00000022267				72	0	0	40	25	38.4615
MAP7D3	0	genome.wustl.edu	37	X	135301782	135301782	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	135301782	135301782	C	T	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	silent	c.2481	p.A827	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				191	0	0	67	31	31.6327
GPR112	0	genome.wustl.edu	37	X	135429336	135429336	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	135429336	135429336	C	A	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	silent	c.3471	p.S1157	0.085	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				204	0	0	106	68	39.0805
ZIC3	0	genome.wustl.edu	37	X	136649419	136649419	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	136649419	136649419	G	T	SNP	ZIC3	ENST00000287538	human	ensembl	74_37	+1	known	missense	c.569	p.G190V	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC3	HGNC	ENSG00000156925				94	0	0	80	20	20
FGF13	0	genome.wustl.edu	37	X	137793157	137793157	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	137793157	137793157	C	T	SNP	FGF13	ENST00000315930	human	ensembl	74_37	-1	known	silent	c.9	p.A3	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF13	HGNC	ENSG00000129682				86	0	0	82	5	5.74713
F9	0	genome.wustl.edu	37	X	138644209	138644209	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	138644209	138644209	G	A	SNP	F9	ENST00000218099	human	ensembl	74_37	+1	known	silent	c.1365	p.K455	0.701	superfamily_Trypsin-like_Pept_dom,pirsf_Pept_S1A_FX,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,pirsf_Pept_S1A_FX,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain	-	no_errors	F9	HGNC	ENSG00000101981				66	0	0	45	4	8.16327
ATP11C	0	genome.wustl.edu	37	X	138882248	138882248	+	Silent	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	138882248	138882248	G	T	SNP	ATP11C	ENST00000327569	human	ensembl	74_37	-1	known	silent	c.690	p.I230	0.998	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11C	HGNC	ENSG00000101974				79	0	0	51	20	28.169
AFF2	0	genome.wustl.edu	37	X	147733536	147733536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	147733536	147733536	C	T	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	missense	c.64	p.R22C	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				219	0	0	112	52	31.7073
AFF2	0	genome.wustl.edu	37	X	147744087	147744087	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	147744087	147744087	T	C	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	missense	c.839	p.M280T	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				187	0	0	88	55	38.4615
AFF2	0	genome.wustl.edu	37	X	147967422	147967422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	147967422	147967422	G	A	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	missense	c.1266	p.M422I	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				373	0	0	329	24	6.79887
MTM1	0	genome.wustl.edu	37	X	149818188	149818188	+	Splice_Site	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	149818188	149818188	G	A	SNP	MTM1	ENST00000370396	human	ensembl	74_37	+1	known	splice_site	c.868-1	e9-1	1.000	-	-	-	no_errors	MTM1	HGNC	ENSG00000171100				89	0	0	40	29	42.029
MTMR1	0	genome.wustl.edu	37	X	149905188	149905188	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	149905188	149905188	C	A	SNP	MTMR1	ENST00000445323	human	ensembl	74_37	+1	known	missense	c.1202	p.P401H	1.000	smart_Tyr_Pase_cat	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR1	HGNC	ENSG00000063601				72	0	0	36	27	42.8571
MTMR1	0	genome.wustl.edu	37	X	149912872	149912872	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	149912872	149912872	C	T	SNP	MTMR1	ENST00000445323	human	ensembl	74_37	+1	known	nonsense	c.1513	p.R505*	1.000	smart_Tyr_Pase_cat	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR1	HGNC	ENSG00000063601				152	1	0.653595	63	43	40.566
GABRE	0	genome.wustl.edu	37	X	151138815	151138815	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	151138815	151138815	C	T	SNP	GABRE	ENST00000370328	human	ensembl	74_37	-1	known	missense	c.116	p.G39D	0.006	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAe_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRE	HGNC	ENSG00000102287				219	0	0	92	69	42.8571
ENSG00000266560	0	genome.wustl.edu	37	X	151283626	151283626	+	RNA	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	151283626	151283626	C	T	SNP	ENSG00000266560	ENST00000509345	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-1007I13.4	Clone_based_vega_gene	ENSG00000266560				201	0	0	91	62	40.5229
GABRA3	0	genome.wustl.edu	37	X	151358315	151358315	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	151358315	151358315	C	T	SNP	GABRA3	ENST00000370314	human	ensembl	74_37	-1	known	missense	c.1030	p.V344I	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677				76	0	0	46	17	26.9841
MAGEA12	0	genome.wustl.edu	37	X	151900066	151900066	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	151900066	151900066	C	T	SNP	MAGEA12	ENST00000357916	human	ensembl	74_37	-1	known	silent	c.735	p.L245	0.007	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401				292	0	0	154	66	30
PNMA3	0	genome.wustl.edu	37	X	152226190	152226190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	152226190	152226190	G	A	SNP	PNMA3	ENST00000370264	human	ensembl	74_37	+1	known	missense	c.778	p.A260T	0.001	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PNMA3	HGNC	ENSG00000183837				199	0	0	78	76	49.3506
ATP2B3	0	genome.wustl.edu	37	X	152807870	152807870	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	152807870	152807870	C	T	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.754	p.R252C	1.000	pfam_ATPase_P-typ_transduc_dom_A,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				63	0	0	52	28	35
ATP2B3	0	genome.wustl.edu	37	X	152845526	152845526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	152845526	152845526	C	T	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.3433	p.P1145S	1.000	pfam_ATP_Ca_trans_C	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				292	0	0	290	23	7.34824
PNCK	0	genome.wustl.edu	37	X	152938067	152938067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	152938067	152938067	G	A	SNP	PNCK	ENST00000447676	human	ensembl	74_37	-1	known	missense	c.403	p.R135W	0.387	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PNCK	HGNC	ENSG00000130822				113	0	0	61	57	48.3051
BCAP31	0	genome.wustl.edu	37	X	152986489	152986489	+	RNA	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	152986489	152986489	C	A	SNP	BCAP31	ENST00000468947	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BCAP31	HGNC	ENSG00000185825				29	0	0	16	8	33.3333
PDZD4	0	genome.wustl.edu	37	X	153069711	153069711	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153069711	153069711	G	A	SNP	PDZD4	ENST00000164640	human	ensembl	74_37	-1	known	silent	c.1407	p.S469	0.978	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840				43	0	0	34	16	32
L1CAM	0	genome.wustl.edu	37	X	153130378	153130378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153130378	153130378	C	T	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	missense	c.2950	p.D984N	0.922	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				235	0	0	186	53	22.1757
MECP2	0	genome.wustl.edu	37	X	153297719	153297719	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153297719	153297719	G	A	SNP	MECP2	ENST00000303391	human	ensembl	74_37	-1	known	missense	c.316	p.R106W	0.972	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057				176	0	0	83	64	43.5374
OPN1LW	0	genome.wustl.edu	37	X	153416216	153416216	+	Silent	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153416216	153416216	C	A	SNP	OPN1LW	ENST00000369951	human	ensembl	74_37	+1	known	silent	c.201	p.S67	0.001	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_red/grn,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076				296	0	0	149	49	24.7475
PIGA	0	genome.wustl.edu	37	X	15349522	15349522	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	15349522	15349522	A	G	SNP	PIGA	ENST00000333590	human	ensembl	74_37	-1	known	silent	c.531	p.D177	1.000	NULL	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195				109	0	0	31	22	41.5094
TKTL1	0	genome.wustl.edu	37	X	153556271	153556271	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153556271	153556271	C	T	SNP	TKTL1	ENST00000369915	human	ensembl	74_37	+1	known	missense	c.1585	p.R529W	0.468	pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350				271	0	0	117	92	44.0191
FLNA	0	genome.wustl.edu	37	X	153581805	153581805	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153581805	153581805	A	G	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.5881	p.S1961P	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				114	0	0	62	45	42.0561
FLNA	0	genome.wustl.edu	37	X	153595185	153595185	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153595185	153595185	C	T	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.902	p.R301Q	0.999	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				132	0	0	89	6	6.31579
PLXNA3	0	genome.wustl.edu	37	X	153690582	153690582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153690582	153690582	G	A	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	missense	c.1249	p.V417M	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				123	0	0	61	40	39.604
ASMTL	0	genome.wustl.edu	37	X	1537918	1537918	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	1537918	1537918	C	T	SNP	ASMTL	ENST00000381317	human	ensembl	74_37	-1	known	silent	c.1335	p.T445	0.989	pfam_O_MeTrfase_2	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093				32	0	0	18	8	30.7692
F8	0	genome.wustl.edu	37	X	154133272	154133272	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	154133272	154133272	A	G	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	silent	c.5400	p.R1800	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				95	0	0	35	30	46.1538
P2RY8	0	genome.wustl.edu	37	X	1585129	1585129	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	1585129	1585129	T	A	SNP	P2RY8	ENST00000381297	human	ensembl	74_37	-1	known	missense	c.323	p.Y108F	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	P2RY8	HGNC	ENSG00000182162				37	0	0	26	20	43.4783
RBBP7	0	genome.wustl.edu	37	X	16870947	16870947	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	16870947	16870947	C	T	SNP	RBBP7	ENST00000380087	human	ensembl	74_37	-1	known	silent	c.810	p.A270	0.011	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Histone-bd_RBBP4_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RBBP7	HGNC	ENSG00000102054				217	0	0	150	79	34.4978
AKAP17A	0	genome.wustl.edu	37	X	1713017	1713017	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	1713017	1713017	A	G	SNP	AKAP17A	ENST00000313871	human	ensembl	74_37	+1	known	missense	c.662	p.Y221C	0.935	NULL	NULL	-	no_errors	AKAP17A	HGNC	ENSG00000197976				131	0	0	71	41	36.6071
NHS	0	genome.wustl.edu	37	X	17743968	17743968	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	17743968	17743968	G	A	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	missense	c.1679	p.R560K	1.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				125	0	0	56	46	45.098
NHS	0	genome.wustl.edu	37	X	17744389	17744389	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	17744389	17744389	T	C	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	silent	c.2100	p.S700	0.243	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				249	0	0	136	98	41.8803
MBTPS2	0	genome.wustl.edu	37	X	21871621	21871621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	21871621	21871621	G	A	SNP	MBTPS2	ENST00000379484	human	ensembl	74_37	+1	known	missense	c.670	p.G224S	1.000	pfam_Peptidase_M50,superfamily_PDZ	pfam_Peptidase_M50,superfamily_PDZ,prints_MBTPS2	-	no_errors	MBTPS2	HGNC	ENSG00000012174				156	0	0	62	37	37.3737
DDX53	0	genome.wustl.edu	37	X	23018420	23018420	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	23018420	23018420	A	G	SNP	DDX53	ENST00000327968	human	ensembl	74_37	+1	known	missense	c.246	p.I82M	0.007	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,superfamily_P-loop_NTPase,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX53	HGNC	ENSG00000184735				131	0	0	73	56	43.4109
PTCHD1	0	genome.wustl.edu	37	X	23411871	23411871	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	23411871	23411871	A	G	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	missense	c.2236	p.K746E	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186				121	0	0	44	31	41.3333
ZBED1	0	genome.wustl.edu	37	X	2407120	2407120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	2407120	2407120	C	T	SNP	ZBED1	ENST00000381218	human	ensembl	74_37	-1	known	missense	c.1641	p.M547I	1.000	superfamily_RNaseH-like_dom	pfam_HATC_dom_C,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717				72	0	0	54	12	18.1818
ARX	0	genome.wustl.edu	37	X	25033798	25033798	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	25033798	25033798	T	C	SNP	ARX	ENST00000379044	human	ensembl	74_37	-1	known	silent	c.57	p.K19	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom,prints_Antifreeze_1	-	no_errors	ARX	HGNC	ENSG00000004848				15	0	0	19	7	26.9231
PPP2R3B	0	genome.wustl.edu	37	X	299352	299352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	299352	299352	G	A	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	missense	c.1564	p.P522S	0.998	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				29	0	0	32	16	33.3333
DMD	0	genome.wustl.edu	37	X	32490321	32490321	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	32490321	32490321	G	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.2909	p.T970N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				147	0	0	59	37	38.5417
FAM47B	0	genome.wustl.edu	37	X	34961384	34961384	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	34961384	34961384	C	A	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	missense	c.436	p.L146I	0.028	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				96	0	0	46	38	45.2381
FAM47B	0	genome.wustl.edu	37	X	34961421	34961421	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	34961421	34961421	A	G	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	missense	c.473	p.K158R	0.808	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				76	0	0	39	17	30.3571
FAM47B	0	genome.wustl.edu	37	X	34961700	34961700	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	34961700	34961700	C	A	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	missense	c.752	p.P251H	0.618	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				165	0	0	89	74	45.3988
FAM47B	0	genome.wustl.edu	37	X	34962108	34962108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	34962108	34962108	C	T	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	missense	c.1160	p.P387L	0.001	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132				83	0	0	38	21	35.5932
RPGR	0	genome.wustl.edu	37	X	38129019	38129019	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	38129019	38129019	G	A	SNP	RPGR	ENST00000339363	human	ensembl	74_37	-1	known	missense	c.2923	p.P975S	0.004	superfamily_RCC1/BLIP-II	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313				73	0	0	25	16	39.0244
BCOR	0	genome.wustl.edu	37	X	39934412	39934412	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	39934412	39934412	T	C	SNP	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	missense	c.187	p.R63G	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337				37	0	0	18	11	37.931
DDX3X	0	genome.wustl.edu	37	X	41205842	41205842	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	41205842	41205842	C	T	SNP	DDX3X	ENST00000399959	human	ensembl	74_37	+1	known	missense	c.1582	p.R528C	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3X	HGNC	ENSG00000215301				167	0	0	89	9	9.18367
NYX	0	genome.wustl.edu	37	X	41333774	41333774	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	41333774	41333774	T	C	SNP	NYX	ENST00000342595	human	ensembl	74_37	+1	known	silent	c.1068	p.R356	0.258	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	NYX	HGNC	ENSG00000188937				24	0	0	25	14	35.8974
NYX	0	genome.wustl.edu	37	X	41334051	41334051	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	41334051	41334051	C	T	SNP	NYX	ENST00000342595	human	ensembl	74_37	+1	known	missense	c.1345	p.R449C	0.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	NYX	HGNC	ENSG00000188937				15	0	0	10	6	37.5
CXorf36	0	genome.wustl.edu	37	X	45059991	45059991	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	45059991	45059991	G	A	SNP	CXorf36	ENST00000398000	human	ensembl	74_37	-1	known	silent	c.81	p.S27	0.957	NULL	NULL	-	no_errors	CXorf36	HGNC	ENSG00000147113				40	0	0	17	3	15
RP2	0	genome.wustl.edu	37	X	46712975	46712975	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	46712975	46712975	C	T	SNP	RP2	ENST00000218340	human	ensembl	74_37	+1	known	missense	c.167	p.T56M	0.587	superfamily_Adenylate_cyclase-assoc_CAP_C,pirsf_Protein_XRP2	pfam_Tubulin-bd_cofactor_C_dom,superfamily_Nucleoside_diP_kinase,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif,pirsf_Protein_XRP2	-	no_errors	RP2	HGNC	ENSG00000102218				160	0	0	52	41	44.086
ZNF157	0	genome.wustl.edu	37	X	47271825	47271825	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	47271825	47271825	A	T	SNP	ZNF157	ENST00000377073	human	ensembl	74_37	+1	known	missense	c.353	p.D118V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF157	HGNC	ENSG00000147117				95	0	0	32	36	52.9412
ARAF	0	genome.wustl.edu	37	X	47426492	47426492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	47426492	47426492	C	T	SNP	ARAF	ENST00000377045	human	ensembl	74_37	+1	known	missense	c.835	p.R279C	0.969	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	ARAF	HGNC	ENSG00000078061				61	0	0	43	26	37.6812
CFP	0	genome.wustl.edu	37	X	47486574	47486574	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	47486574	47486574	C	T	SNP	CFP	ENST00000247153	human	ensembl	74_37	-1	known	silent	c.732	p.E244	0.061	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	CFP	HGNC	ENSG00000126759				34	0	0	22	14	38.8889
ZNF81	0	genome.wustl.edu	37	X	47775788	47775788	+	Silent	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	47775788	47775788	T	C	SNP	ZNF81	ENST00000338637	human	ensembl	74_37	+1	known	silent	c.1743	p.P581	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF81	HGNC	ENSG00000197779				75	0	0	39	7	15.2174
PORCN	0	genome.wustl.edu	37	X	48372714	48372714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	48372714	48372714	C	T	SNP	PORCN	ENST00000326194	human	ensembl	74_37	+1	known	missense	c.806	p.A269V	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	PORCN	HGNC	ENSG00000102312				60	0	0	24	29	54.717
PQBP1	0	genome.wustl.edu	37	X	48758490	48758490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	48758490	48758490	G	A	SNP	PQBP1	ENST00000218224	human	ensembl	74_37	+1	known	missense	c.91	p.E31K	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	PQBP1	HGNC	ENSG00000102103				35	0	0	10	5	33.3333
SLC35A2	0	genome.wustl.edu	37	X	48762402	48762402	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	48762402	48762402	C	T	SNP	SLC35A2	ENST00000452555	human	ensembl	74_37	-1	known	missense	c.868	p.G290S	1.000	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	pfam_Nuc_sug_transpt,pfam_UAA,pfam_DMT,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A2	HGNC	ENSG00000102100				28	0	0	26	5	16.129
TFE3	0	genome.wustl.edu	37	X	48891041	48891041	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	48891041	48891041	G	A	SNP	TFE3	ENST00000315869	human	ensembl	74_37	-1	known	nonsense	c.1075	p.R359*	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFE3	HGNC	ENSG00000068323				64	0	0	36	19	34.5455
CCDC120	0	genome.wustl.edu	37	X	48921421	48921421	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	48921421	48921421	C	T	SNP	CCDC120	ENST00000603986	human	ensembl	74_37	+1	known	silent	c.318	p.C106	1.000	pfam_DUF3338	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144				51	0	0	22	23	51.1111
PRICKLE3	0	genome.wustl.edu	37	X	49034431	49034431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	49034431	49034431	C	T	SNP	PRICKLE3	ENST00000376317	human	ensembl	74_37	-1	known	missense	c.866	p.R289H	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211				69	0	0	46	20	30.303
PRICKLE3	0	genome.wustl.edu	37	X	49036124	49036124	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	49036124	49036124	T	C	SNP	PRICKLE3	ENST00000376317	human	ensembl	74_37	-1	known	missense	c.344	p.D115G	1.000	pfam_PET_domain	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211				14	0	0	8	6	42.8571
SYP	0	genome.wustl.edu	37	X	49050714	49050714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	49050714	49050714	G	A	SNP	SYP	ENST00000263233	human	ensembl	74_37	-1	known	missense	c.332	p.A111V	0.992	pfam_Marvel,prints_Synaptophysin/porin	pfam_Marvel,prints_Synaptophysin/porin	-	no_errors	SYP	HGNC	ENSG00000102003				83	0	0	90	5	5.26316
MAGED1	0	genome.wustl.edu	37	X	51640423	51640423	+	RNA	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	51640423	51640423	G	A	SNP	MAGED1	ENST00000494718	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MAGED1	HGNC	ENSG00000179222				57	0	0	33	30	47.619
TSPYL2	0	genome.wustl.edu	37	X	53112245	53112245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	53112245	53112245	C	T	SNP	TSPYL2	ENST00000375442	human	ensembl	74_37	+1	known	missense	c.565	p.R189W	0.013	NULL	pfam_NAP_family	-	no_errors	TSPYL2	HGNC	ENSG00000184205				30	0	0	21	5	19.2308
KDM5C	0	genome.wustl.edu	37	X	53245079	53245079	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	53245079	53245079	C	T	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	silent	c.861	p.S287	0.245	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				97	0	0	47	15	24.1935
HUWE1	0	genome.wustl.edu	37	X	53574768	53574768	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	53574768	53574768	G	A	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.10502	p.T3501M	0.927	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				22	0	0	19	8	29.6296
HUWE1	0	genome.wustl.edu	37	X	53588851	53588851	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	53588851	53588851	T	C	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.7373	p.D2458G	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				107	0	0	41	32	43.8356
WNK3	0	genome.wustl.edu	37	X	54263764	54263764	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	54263764	54263764	A	G	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	missense	c.4235	p.V1412A	0.002	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				103	0	0	33	10	23.2558
SNORA11	0	genome.wustl.edu	37	X	54840825	54840825	+	RNA	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	54840825	54840825	C	G	SNP	SNORA11	ENST00000408789	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA11	HGNC	ENSG00000221716				218	0	0	60	54	47.3684
USP51	0	genome.wustl.edu	37	X	55515144	55515144	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	55515144	55515144	T	C	SNP	USP51	ENST00000500968	human	ensembl	74_37	-1	known	missense	c.229	p.S77G	0.975	NULL	pfam_Peptidase_C19/C67,pfam_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP51	HGNC	ENSG00000247746				38	0	0	20	23	53.4884
NLGN4X	0	genome.wustl.edu	37	X	5821127	5821127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	5821127	5821127	G	A	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	missense	c.1652	p.A551V	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				105	0	0	48	20	29.4118
NLGN4X	0	genome.wustl.edu	37	X	5821498	5821498	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	5821498	5821498	G	A	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	silent	c.1281	p.Y427	0.990	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				48	0	0	21	12	36.3636
ZC4H2	0	genome.wustl.edu	37	X	64196330	64196330	+	RNA	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	64196330	64196330	T	C	SNP	ZC4H2	ENST00000488608	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.927	-	-	-	no_errors	ZC4H2	HGNC	ENSG00000126970				62	0	0	29	20	40.8163
ZC3H12B	0	genome.wustl.edu	37	X	64722733	64722733	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	64722733	64722733	C	T	SNP	ZC3H12B	ENST00000338957	human	ensembl	74_37	+1	known	nonsense	c.2155	p.R719*	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053				63	0	0	38	18	32.1429
OPHN1	0	genome.wustl.edu	37	X	67272396	67272396	+	Silent	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	67272396	67272396	G	A	SNP	OPHN1	ENST00000355520	human	ensembl	74_37	-1	known	silent	c.2361	p.S787	0.989	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482				25	0	0	3	7	70
P2RY4	0	genome.wustl.edu	37	X	69478840	69478840	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	69478840	69478840	G	A	SNP	P2RY4	ENST00000374519	human	ensembl	74_37	-1	known	missense	c.635	p.P212L	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y4_rcpt,prints_GPCR_Rhodpsn,prints_P2Y2_rcpt	-	no_errors	P2RY4	HGNC	ENSG00000186912				60	0	0	42	22	34.375
TEX11	0	genome.wustl.edu	37	X	70127625	70127625	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	70127625	70127625	A	G	SNP	TEX11	ENST00000374333	human	ensembl	74_37	-1	known	silent	c.15	p.D5	0.001	NULL	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498				65	0	0	26	19	42.2222
FOXO4	0	genome.wustl.edu	37	X	70320819	70320819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	70320819	70320819	C	T	SNP	FOXO4	ENST00000374259	human	ensembl	74_37	+1	known	missense	c.739	p.R247C	0.321	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481				33	0	0	22	18	45
FOXO4	0	genome.wustl.edu	37	X	70321313	70321313	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	70321313	70321313	C	T	SNP	FOXO4	ENST00000374259	human	ensembl	74_37	+1	known	silent	c.1233	p.G411	0.023	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO4	HGNC	ENSG00000184481				72	0	0	51	25	32.8947
NLGN3	0	genome.wustl.edu	37	X	70389595	70389595	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	70389595	70389595	G	A	SNP	NLGN3	ENST00000358741	human	ensembl	74_37	+1	known	missense	c.2195	p.R732H	1.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338				58	0	0	30	14	31.8182
NONO	0	genome.wustl.edu	37	X	70517750	70517750	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	70517750	70517750	C	T	SNP	NONO	ENST00000276079	human	ensembl	74_37	+1	known	nonsense	c.1093	p.R365*	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NONO	HGNC	ENSG00000147140				56	0	0	25	16	39.0244
RLIM	0	genome.wustl.edu	37	X	73812036	73812036	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	73812036	73812036	G	A	SNP	RLIM	ENST00000332687	human	ensembl	74_37	-1	known	missense	c.1114	p.R372W	0.999	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RLIM	HGNC	ENSG00000131263				118	0	0	39	29	42.6471
ATP7A	0	genome.wustl.edu	37	X	77266709	77266709	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	77266709	77266709	C	T	SNP	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	missense	c.1906	p.R636W	1.000	superfamily_HeavyMe-assoc_HMA	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				145	0	0	56	27	32.5301
ATP7A	0	genome.wustl.edu	37	X	77284891	77284891	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	77284891	77284891	C	T	SNP	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	nonsense	c.3061	p.Q1021*	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_Cation_transp_P-typ_ATPase_IB	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				181	0	0	82	29	26.1261
BRWD3	0	genome.wustl.edu	37	X	80001091	80001091	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	80001091	80001091	G	A	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	nonsense	c.568	p.R190*	1.000	pfam_WD40_repeat,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				37	0	0	19	14	42.4242
SH3BGRL	0	genome.wustl.edu	37	X	80457739	80457739	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	80457739	80457739	A	G	SNP	SH3BGRL	ENST00000373212	human	ensembl	74_37	+1	known	missense	c.40	p.T14A	0.867	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGRL	HGNC	ENSG00000131171				38	0	0	31	5	13.8889
PABPC5	0	genome.wustl.edu	37	X	90690639	90690639	+	Silent	SNP	C	C	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	90690639	90690639	C	T	SNP	PABPC5	ENST00000312600	human	ensembl	74_37	+1	known	silent	c.63	p.Y21	0.939	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC5	HGNC	ENSG00000174740				70	0	0	29	17	36.9565
PCDH11X	0	genome.wustl.edu	37	X	91132510	91132510	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	91132510	91132510	T	C	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.1271	p.L424P	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				205	0	0	53	54	50.4673
RPA4	0	genome.wustl.edu	37	X	96140046	96140046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	96140046	96140046	G	A	SNP	RPA4	ENST00000373040	human	ensembl	74_37	+1	known	missense	c.737	p.G246D	0.013	pfam_RPA_C,pirsf_RPA32	pfam_RPA_C,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pirsf_RPA32	-	no_errors	RPA4	HGNC	ENSG00000204086				115	0	0	47	22	31.8841
SYTL4	0	genome.wustl.edu	37	X	99933721	99933721	+	RNA	SNP	C	C	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	99933721	99933721	C	G	SNP	SYTL4	ENST00000491602	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SYTL4	HGNC	ENSG00000102362				17	0	0	10	4	28.5714
SYTL4	0	genome.wustl.edu	37	X	99942204	99942204	+	Silent	SNP	A	A	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	99942204	99942204	A	G	SNP	SYTL4	ENST00000454200	human	ensembl	74_37	-1	known	silent	c.1050	p.A350	1.000	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362				96	0	0	42	43	50.5882
SASS6	0	genome.wustl.edu	37	1	100588802	100588802	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	100588802	100588802	A	-	DEL	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	frame_shift_del	c.170	p.L57fs	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				44	0	0	10	10	50
CDC14A	0	genome.wustl.edu	37	1	100889837	100889837	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	100889837	100889837	C	-	DEL	CDC14A	ENST00000361544	human	ensembl	74_37	+1	known	frame_shift_del	c.369	p.Y126fs	0.021	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335				139	0	0	48	26	35.1351
UBE4B	0	genome.wustl.edu	37	1	10177642	10177642	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	10177642	10177642	A	-	DEL	UBE4B	ENST00000343090	human	ensembl	74_37	+1	known	frame_shift_del	c.1322	p.A444fs	1.000	NULL	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939				49	0	0	23	10	30.303
COL11A1	0	genome.wustl.edu	37	1	103385868	103385868	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	103385868	103385868	T	-	DEL	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	frame_shift_del	c.3797	p.K1266fs	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				197	0	0	109	32	22.695
NTNG1	0	genome.wustl.edu	37	1	107691083	107691083	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	107691083	107691083	A	-	DEL	NTNG1	ENST00000462149	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NTNG1	HGNC	ENSG00000162631				21	0	0	10	3	23.0769
AMPD2	0	genome.wustl.edu	37	1	110169810	110169810	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	110169810	110169810	C	-	DEL	AMPD2	ENST00000256578	human	ensembl	74_37	+1	known	frame_shift_del	c.894	p.P300fs	1.000	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD2	HGNC	ENSG00000116337				116	0	0	68	30	30.6122
EPS8L3	0	genome.wustl.edu	37	1	110300580	110300580	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	110300580	110300580	T	-	DEL	EPS8L3	ENST00000369805	human	ensembl	74_37	-1	known	frame_shift_del	c.821	p.N274fs	0.352	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L3	HGNC	ENSG00000198758				166	0	0	97	33	25.3846
LRIF1	0	genome.wustl.edu	37	1	111490657	111490658	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	111490657	111490658	-	T	INS	LRIF1	ENST00000369763	human	ensembl	74_37	-1	known	frame_shift_ins	c.2234_2233	p.I745fs	1.000:1.000	NULL	NULL	-	no_errors	LRIF1	HGNC	ENSG00000121931				128	0	0	76	7	8.43373
TTLL10	0	genome.wustl.edu	37	1	1116223	1116224	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	1116223	1116224	GG	-	DEL	TTLL10	ENST00000379289	human	ensembl	74_37	+1	known	frame_shift_del	c.738_739	p.V249fs	0.000:0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL10	HGNC	ENSG00000162571				16	0	0	5	4	44.4444
ADORA3	0	genome.wustl.edu	37	1	112045810	112045811	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	112045810	112045811	-	T	INS	ADORA3	ENST00000369716	human	ensembl	74_37	-1	known	frame_shift_ins	c.167_166	p.L56fs	1.000:0.983	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Adeno_A3_rcpt,prints_GPCR_Rhodpsn	-	no_errors	ADORA3	HGNC	ENSG00000121933				53	0	0	32	19	37.2549
MOV10	0	genome.wustl.edu	37	1	113243060	113243060	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	113243060	113243060	C	-	DEL	MOV10	ENST00000357443	human	ensembl	74_37	+1	known	frame_shift_del	c.2943	p.Q983fs	0.829	NULL	superfamily_P-loop_NTPase	-	no_errors	MOV10	HGNC	ENSG00000155363				87	0	0	48	27	36
MAGI3	0	genome.wustl.edu	37	1	114216007	114216007	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	114216007	114216007	G	-	DEL	MAGI3	ENST00000369611	human	ensembl	74_37	+1	known	frame_shift_del	c.3109	p.K1039fs	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI3	HGNC	ENSG00000081026				171	0	0	87	43	33.0769
TAS1R3	0	genome.wustl.edu	37	1	1266835	1266836	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	1266835	1266836	-	G	INS	TAS1R3	ENST00000339381	human	ensembl	74_37	+1	known	frame_shift_ins	c.110_111	p.L40fs	0.997:1.000	superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R3	HGNC	ENSG00000169962				44	0	0	19	8	29.6296
DVL1	0	genome.wustl.edu	37	1	1273478	1273478	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	1273478	1273478	G	-	DEL	DVL1	ENST00000378888	human	ensembl	74_37	-1	known	frame_shift_del	c.1593	p.W532fs	1.000	pfam_Dishevelled_C-dom	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam	-	no_errors	DVL1	HGNC	ENSG00000107404				28	0	0	20	9	31.0345
MXRA8	0	genome.wustl.edu	37	1	1290110	1290110	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	1290110	1290110	G	-	DEL	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	frame_shift_del	c.901	p.R301fs	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				27	0	0	10	19	65.5172
ANKRD34A	0	genome.wustl.edu	37	1	145473439	145473439	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	145473439	145473439	G	-	DEL	ANKRD34A	ENST00000323397	human	ensembl	74_37	+1	known	frame_shift_del	c.111	p.E39fs	0.980	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34A	HGNC	ENSG00000181039				117	0	0	116	45	27.9503
ITGA10	0	genome.wustl.edu	37	1	145537735	145537736	+	Splice_Site	DEL	AG	AG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	145537735	145537736	AG	-	DEL	ITGA10	ENST00000369304	human	ensembl	74_37	+1	known	splice_site_del	c.2575-2_2575-1	e21-1	1.000:1.000	-	-	-	no_errors	ITGA10	HGNC	ENSG00000143127				72	0	0	82	16	16.3265
MTMR11	0	genome.wustl.edu	37	1	149902648	149902648	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	149902648	149902648	A	-	DEL	MTMR11	ENST00000492824	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTMR11	HGNC	ENSG00000014914				38	0	0	24	5	17.2414
RPRD2	0	genome.wustl.edu	37	1	150445908	150445908	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	150445908	150445908	T	-	DEL	RPRD2	ENST00000492220	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.276	-	-	-	no_errors	RPRD2	HGNC	ENSG00000163125				18	0	0	20	7	25.9259
HORMAD1	0	genome.wustl.edu	37	1	150686528	150686529	+	RNA	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	150686528	150686529	-	A	INS	HORMAD1	ENST00000476530	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.036	-	-	-	no_errors	HORMAD1	HGNC	ENSG00000143452				97	0	0	54	10	15.625
SETDB1	0	genome.wustl.edu	37	1	150917624	150917624	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	150917624	150917624	G	-	DEL	SETDB1	ENST00000368962	human	ensembl	74_37	+1	known	frame_shift_del	c.1180	p.G396fs	0.000	NULL	smart_Tudor	-	no_errors	SETDB1	HGNC	ENSG00000143379				25	0	0	28	11	28.2051
ZNF687	0	genome.wustl.edu	37	1	151259458	151259458	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	151259458	151259458	C	-	DEL	ZNF687	ENST00000324048	human	ensembl	74_37	+1	known	frame_shift_del	c.691	p.Q232fs	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373				180	0	0	167	25	13.0208
MIR554	0	genome.wustl.edu	37	1	151518350	151518351	+	RNA	INS	-	-	TC			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	151518350	151518351	-	TC	INS	MIR554	ENST00000384874	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	MIR554	HGNC	ENSG00000207606				41	0	0	15	14	48.2759
FLG	0	genome.wustl.edu	37	1	152286885	152286885	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	152286885	152286885	T	-	DEL	FLG	ENST00000368799	human	ensembl	74_37	-1	known	frame_shift_del	c.477	p.E160fs	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				101	0	0	46	31	40.2597
NUP210L	0	genome.wustl.edu	37	1	153965404	153965404	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	153965404	153965404	A	-	DEL	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	frame_shift_del	c.5574	p.F1858fs	0.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				178	1	0.558659	150	38	20.2128
PYGO2	0	genome.wustl.edu	37	1	154932028	154932028	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	154932028	154932028	G	-	DEL	PYGO2	ENST00000368457	human	ensembl	74_37	-1	known	frame_shift_del	c.448	p.Q150fs	0.997	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO2	HGNC	ENSG00000163348				76	0	0	88	22	20
SHC1	0	genome.wustl.edu	37	1	154938468	154938468	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	154938468	154938468	G	-	DEL	SHC1	ENST00000368445	human	ensembl	74_37	-1	known	frame_shift_del	c.1338	p.N447fs	0.270	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691				130	0	0	157	60	27.6498
MUC1	0	genome.wustl.edu	37	1	155160852	155160852	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155160852	155160852	A	-	DEL	MUC1	ENST00000368395	human	ensembl	74_37	-1	known	frame_shift_del	c.675	p.A226fs	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC1	HGNC	ENSG00000185499				34	0	0	43	11	20.3704
CLK2	0	genome.wustl.edu	37	1	155232988	155232988	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155232988	155232988	G	-	DEL	CLK2	ENST00000476983	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CLK2	HGNC	ENSG00000176444				38	0	0	13	11	45.8333
GON4L	0	genome.wustl.edu	37	1	155785777	155785778	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	155785777	155785778	AA	-	DEL	GON4L	ENST00000471341	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580				13	0	0	5	6	54.5455
MEF2D	0	genome.wustl.edu	37	1	156438036	156438036	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156438036	156438036	G	-	DEL	MEF2D	ENST00000348159	human	ensembl	74_37	-1	known	frame_shift_del	c.1303	p.H435fs	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	MEF2D	HGNC	ENSG00000116604				67	0	0	91	21	18.75
HDGF	0	genome.wustl.edu	37	1	156715104	156715104	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156715104	156715104	A	-	DEL	HDGF	ENST00000368206	human	ensembl	74_37	-1	known	frame_shift_del	c.197	p.F66fs	1.000	pfam_PWWP_dom	pfam_PWWP_dom	-	no_errors	HDGF	HGNC	ENSG00000143321				34	0	0	33	6	15.3846
PEAR1	0	genome.wustl.edu	37	1	156883790	156883790	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156883790	156883790	C	-	DEL	PEAR1	ENST00000292357	human	ensembl	74_37	+1	known	frame_shift_del	c.2860	p.R956fs	0.864	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	PEAR1	HGNC	ENSG00000187800				31	0	0	27	6	18.1818
ARHGEF11	0	genome.wustl.edu	37	1	156926350	156926350	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	156926350	156926350	G	-	DEL	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	frame_shift_del	c.1533	p.M512fs	1.000	pfam_RGS-like_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694				120	0	0	65	58	47.1545
MNDA	0	genome.wustl.edu	37	1	158813814	158813814	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	158813814	158813814	C	-	DEL	MNDA	ENST00000368141	human	ensembl	74_37	+1	known	frame_shift_del	c.472	p.P159fs	0.001	NULL	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563				201	0	0	165	112	40.4332
KCNJ10	0	genome.wustl.edu	37	1	160012018	160012018	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	160012018	160012018	G	-	DEL	KCNJ10	ENST00000368089	human	ensembl	74_37	-1	known	frame_shift_del	c.305	p.P102fs	0.995	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.2,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ10	HGNC	ENSG00000177807				124	0	0	116	38	24.6753
KCNJ9	0	genome.wustl.edu	37	1	160057324	160057324	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	160057324	160057324	G	-	DEL	KCNJ9	ENST00000368088	human	ensembl	74_37	+1	known	frame_shift_del	c.899	p.G301fs	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.3	-	no_errors	KCNJ9	HGNC	ENSG00000162728				107	0	0	80	72	47.3684
ATP1A4	0	genome.wustl.edu	37	1	160134106	160134106	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	160134106	160134106	T	-	DEL	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	frame_shift_del	c.939	p.F315fs	0.145	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				251	0	0	230	75	24.5902
USP21	0	genome.wustl.edu	37	1	161134660	161134660	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	161134660	161134660	A	-	DEL	USP21	ENST00000289865	human	ensembl	74_37	+1	known	frame_shift_del	c.1420	p.S476fs	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP21	HGNC	ENSG00000143258				106	1	0.934579	92	16	14.8148
C1orf192	0	genome.wustl.edu	37	1	161335436	161335437	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	161335436	161335437	-	G	INS	C1orf192	ENST00000367974	human	ensembl	74_37	-1	known	frame_shift_ins	c.228_227	p.A77fs	0.998:1.000	NULL	NULL	-	no_errors	C1orf192	HGNC	ENSG00000188931				201	0	0	208	56	21.2121
HSPA6	0	genome.wustl.edu	37	1	161495465	161495465	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	161495465	161495465	G	-	DEL	HSPA6	ENST00000309758	human	ensembl	74_37	+1	known	frame_shift_del	c.1017	p.G341fs	1.000	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA6	HGNC	ENSG00000173110				49	0	0	37	32	46.3768
MGST3	0	genome.wustl.edu	37	1	165621239	165621240	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	165621239	165621240	-	T	INS	MGST3	ENST00000367886	human	ensembl	74_37	+1	known	frame_shift_ins	c.258_259	p.L88fs	0.488:0.997	pfam_Membr-assoc_MAPEG	pfam_Membr-assoc_MAPEG	-	no_errors	MGST3	HGNC	ENSG00000143198				68	0	0	37	7	15.9091
TADA1	0	genome.wustl.edu	37	1	166845410	166845410	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	166845410	166845410	C	-	DEL	TADA1	ENST00000367874	human	ensembl	74_37	-1	known	frame_shift_del	c.61	p.D21fs	1.000	NULL	superfamily_Histone-fold	-	no_errors	TADA1	HGNC	ENSG00000152382				21	0	0	36	7	16.2791
NECAP2	0	genome.wustl.edu	37	1	16774818	16774818	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	16774818	16774818	T	-	DEL	NECAP2	ENST00000508680	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NECAP2	HGNC	ENSG00000157191				12	0	0	5	6	54.5455
F5	0	genome.wustl.edu	37	1	169499051	169499051	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	169499051	169499051	T	-	DEL	F5	ENST00000367797	human	ensembl	74_37	-1	known	frame_shift_del	c.5214	p.D1739fs	0.994	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				106	0	0	70	16	18.6047
PRRC2C	0	genome.wustl.edu	37	1	171514739	171514739	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	171514739	171514739	A	-	DEL	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	frame_shift_del	c.4885	p.R1631fs	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523				20	0	0	32	6	15.7895
PRRC2C	0	genome.wustl.edu	37	1	171560900	171560900	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	171560900	171560900	C	-	DEL	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	frame_shift_del	c.8611	p.P2872fs	0.877	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523				112	0	0	125	39	23.7805
RASAL2	0	genome.wustl.edu	37	1	178412033	178412033	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	178412033	178412033	A	-	DEL	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	frame_shift_del	c.1151	p.K386fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391				99	0	0	54	21	28
C1orf27	0	genome.wustl.edu	37	1	186368168	186368168	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	186368168	186368168	A	-	DEL	C1orf27	ENST00000287859	human	ensembl	74_37	+1	known	frame_shift_del	c.992	p.D334fs	0.989	NULL	NULL	-	no_errors	C1orf27	HGNC	ENSG00000157181				24	0	0	7	8	53.3333
KCNT2	0	genome.wustl.edu	37	1	196577587	196577587	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	196577587	196577587	G	-	DEL	KCNT2	ENST00000610076	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.075	-	-	-	no_errors	KCNT2	HGNC	ENSG00000162687				10	0	0	11	2	15.3846
CFHR1	0	genome.wustl.edu	37	1	196799650	196799650	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	196799650	196799650	C	-	DEL	CFHR1	ENST00000320493	human	ensembl	74_37	+1	known	frame_shift_del	c.628	p.P211fs	0.317	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR1	HGNC	ENSG00000244414				204	0	0	103	61	37.1951
F13B	0	genome.wustl.edu	37	1	197030158	197030158	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	197030158	197030158	G	-	DEL	F13B	ENST00000367412	human	ensembl	74_37	-1	known	frame_shift_del	c.499	p.Q167fs	0.985	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278				70	0	0	55	12	17.9104
DDX59	0	genome.wustl.edu	37	1	200594042	200594042	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	200594042	200594042	T	-	DEL	DDX59	ENST00000447706	human	ensembl	74_37	-1	known	frame_shift_del	c.1730	p.N577fs	0.001	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				59	0	0	33	8	19.5122
CAMSAP2	0	genome.wustl.edu	37	1	200776602	200776602	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	200776602	200776602	T	-	DEL	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	frame_shift_del	c.498	p.Q169fs	0.252	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200				105	0	0	85	24	22.0183
PTPN7	0	genome.wustl.edu	37	1	202128443	202128443	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	202128443	202128443	T	-	DEL	PTPN7	ENST00000309017	human	ensembl	74_37	-1	known	frame_shift_del	c.403	p.T135fs	0.003	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN7	HGNC	ENSG00000143851				71	0	0	75	16	17.5824
ENSG00000226862	0	genome.wustl.edu	37	1	202573400	202573400	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	202573400	202573400	C	-	DEL	ENSG00000226862	ENST00000428573	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-569A11.1	Clone_based_vega_gene	ENSG00000226862				27	0	0	8	5	38.4615
PIK3C2B	0	genome.wustl.edu	37	1	204416659	204416660	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	204416659	204416660	-	G	INS	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	frame_shift_ins	c.2394_2393	p.G799fs	0.027:0.018	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				88	0	0	76	67	46.8531
NFASC	0	genome.wustl.edu	37	1	204924033	204924033	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	204924033	204924033	C	-	DEL	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	frame_shift_del	c.489	p.P165fs	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				312	0	0	262	78	22.9412
FAIM3	0	genome.wustl.edu	37	1	207087395	207087395	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	207087395	207087395	C	-	DEL	FAIM3	ENST00000367091	human	ensembl	74_37	-1	known	frame_shift_del	c.82	p.E28fs	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	FAIM3	HGNC	ENSG00000162894				138	0	0	135	46	25.4144
CD34	0	genome.wustl.edu	37	1	208063101	208063102	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	208063101	208063102	AA	-	DEL	CD34	ENST00000367036	human	ensembl	74_37	-1	known	frame_shift_del	c.82_81	p.S28fs	0.000:0.000	NULL	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059				24	0	0	21	13	38.2353
RAB3GAP2	0	genome.wustl.edu	37	1	220369664	220369665	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	220369664	220369665	-	T	INS	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	frame_shift_ins	c.888_887	p.N296fs	0.994:1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				123	1	0.806452	122	34	21.7949
DUSP10	0	genome.wustl.edu	37	1	221875678	221875678	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	221875678	221875678	A	-	DEL	DUSP10	ENST00000468085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DUSP10	HGNC	ENSG00000143507				94	0	0	60	10	14.2857
HHIPL2	0	genome.wustl.edu	37	1	222713509	222713509	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	222713509	222713509	G	-	DEL	HHIPL2	ENST00000343410	human	ensembl	74_37	-1	known	frame_shift_del	c.1293	p.I432fs	0.010	superfamily_Quinoprot_gluc/sorb_DH	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512				112	0	0	95	38	28.5714
PYCR2	0	genome.wustl.edu	37	1	226108959	226108959	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	226108959	226108959	C	-	DEL	PYCR2	ENST00000343818	human	ensembl	74_37	-1	known	frame_shift_del	c.746	p.G249fs	1.000	superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCR2	HGNC	ENSG00000143811				58	0	0	72	18	20
TRIM17	0	genome.wustl.edu	37	1	228596778	228596779	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	228596778	228596779	-	C	INS	TRIM17	ENST00000456946	human	ensembl	74_37	-1	known	frame_shift_ins	c.978_977	p.S327fs	0.000:0.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM17	HGNC	ENSG00000162931				72	0	0	46	20	30.303
C1QA	0	genome.wustl.edu	37	1	22965826	22965826	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	22965826	22965826	A	-	DEL	C1QA	ENST00000374642	human	ensembl	74_37	+1	known	frame_shift_del	c.664	p.K223fs	0.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QA	HGNC	ENSG00000173372				70	0	0	36	23	38.9831
C1orf131	0	genome.wustl.edu	37	1	231362513	231362513	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	231362513	231362513	T	-	DEL	C1orf131	ENST00000366649	human	ensembl	74_37	-1	known	frame_shift_del	c.665	p.K222fs	1.000	NULL	NULL	-	no_errors	C1orf131	HGNC	ENSG00000143633				147	0	0	119	37	23.7179
EGLN1	0	genome.wustl.edu	37	1	231502214	231502214	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	231502214	231502214	T	-	DEL	EGLN1	ENST00000366641	human	ensembl	74_37	-1	known	frame_shift_del	c.1224	p.G409fs	1.000	NULL	pfam_Znf_MYND,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_Znf_MYND	-	no_errors	EGLN1	HGNC	ENSG00000135766				58	0	0	45	6	11.7647
EPHB2	0	genome.wustl.edu	37	1	23240246	23240246	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	23240246	23240246	A	-	DEL	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	frame_shift_del	c.3051	p.K1020fs	0.270	NULL	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				9	0	0	16	10	38.4615
RYR2	0	genome.wustl.edu	37	1	237617790	237617790	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	237617790	237617790	C	-	DEL	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	frame_shift_del	c.1386	p.P464fs	0.997	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				70	0	0	39	36	48
ADSS	0	genome.wustl.edu	37	1	244587345	244587345	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	244587345	244587345	T	-	DEL	ADSS	ENST00000366535	human	ensembl	74_37	-1	known	frame_shift_del	c.491	p.K164fs	1.000	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSS	HGNC	ENSG00000035687				55	0	0	42	29	40.8451
KIF26B	0	genome.wustl.edu	37	1	245849479	245849479	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	245849479	245849479	C	-	DEL	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	frame_shift_del	c.3194	p.R1067fs	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				59	0	0	78	23	22.7723
SMYD3	0	genome.wustl.edu	37	1	246490427	246490428	+	RNA	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	246490427	246490428	-	T	INS	SMYD3	ENST00000470863	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SMYD3	HGNC	ENSG00000185420				83	0	0	64	21	24.7059
NLRP3	0	genome.wustl.edu	37	1	247587978	247587978	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	247587978	247587978	C	-	DEL	NLRP3	ENST00000336119	human	ensembl	74_37	+1	known	frame_shift_del	c.1233	p.L413fs	0.974	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711				83	0	0	84	23	21.4953
ARID1A	0	genome.wustl.edu	37	1	27105931	27105931	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	27105931	27105931	G	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.5542	p.D1850fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				137	0	0	87	37	29.8387
ARID1A	0	genome.wustl.edu	37	1	27106804	27106804	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	27106804	27106804	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.6415	p.F2141fs	0.999	pfam_DUF3518,superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				172	0	0	98	63	39.1304
WDTC1	0	genome.wustl.edu	37	1	27621108	27621108	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	27621108	27621108	G	-	DEL	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	frame_shift_del	c.861	p.E290fs	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				43	0	0	20	22	52.381
PHACTR4	0	genome.wustl.edu	37	1	28785730	28785730	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	28785730	28785730	A	-	DEL	PHACTR4	ENST00000373836	human	ensembl	74_37	+1	known	frame_shift_del	c.181	p.S64fs	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR4	HGNC	ENSG00000204138				79	0	0	20	53	72.6027
EPB41	0	genome.wustl.edu	37	1	29379717	29379717	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	29379717	29379717	A	-	DEL	EPB41	ENST00000343067	human	ensembl	74_37	+1	known	frame_shift_del	c.1738	p.T582fs	0.796	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023				72	0	0	69	30	30.303
PTP4A2	0	genome.wustl.edu	37	1	32384717	32384717	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	32384717	32384717	A	-	DEL	PTP4A2	ENST00000532289	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTP4A2	HGNC	ENSG00000184007				15	0	0	8	7	46.6667
HDAC1	0	genome.wustl.edu	37	1	32797831	32797833	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	32797831	32797833	GAG	-	DEL	HDAC1	ENST00000373548	human	ensembl	74_37	+1	known	in_frame_del	c.1360_1362	p.E455in_frame_del	1.000:1.000:0.967	NULL	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC1	HGNC	ENSG00000116478				122	0	0	88	39	30.7087
DLGAP3	0	genome.wustl.edu	37	1	35370731	35370731	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	35370731	35370731	C	-	DEL	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	frame_shift_del	c.254	p.G85fs	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544				8	0	0	6	7	53.8462
ZMYM4	0	genome.wustl.edu	37	1	35846960	35846960	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	35846960	35846960	A	-	DEL	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	frame_shift_del	c.1282	p.K430fs	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				93	0	0	50	16	24.2424
ENSG00000271554	0	genome.wustl.edu	37	1	36479150	36479150	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	36479150	36479150	A	-	DEL	ENSG00000271554	ENST00000479395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-665N4.8	Clone_based_vega_gene	ENSG00000271554				105	0	0	47	10	17.5439
COL8A2	0	genome.wustl.edu	37	1	36564489	36564489	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	36564489	36564489	C	-	DEL	COL8A2	ENST00000303143	human	ensembl	74_37	-1	known	frame_shift_del	c.793	p.E265fs	1.000	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A2	HGNC	ENSG00000171812				37	0	0	21	15	41.6667
PABPC4	0	genome.wustl.edu	37	1	40028016	40028016	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	40028016	40028016	G	-	DEL	PABPC4	ENST00000372858	human	ensembl	74_37	-1	known	frame_shift_del	c.1741	p.Q581fs	1.000	pfam_PABP_HYD,superfamily_PABP_HYD,smart_PABP_HYD,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4	HGNC	ENSG00000090621				137	0	0	75	41	35.3448
CTPS1	0	genome.wustl.edu	37	1	41462979	41462979	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	41462979	41462979	T	-	DEL	CTPS1	ENST00000486889	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	CTPS1	HGNC	ENSG00000171793				37	0	0	21	8	27.5862
HIVEP3	0	genome.wustl.edu	37	1	42046123	42046124	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	42046123	42046124	-	T	INS	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	frame_shift_ins	c.4346_4345	p.R1449fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				176	0	0	135	20	12.9032
SZT2	0	genome.wustl.edu	37	1	43914072	43914072	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	43914072	43914072	G	-	DEL	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	frame_shift_del	c.9715	p.R3241fs	0.994	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				17	0	0	9	6	40
MAST2	0	genome.wustl.edu	37	1	46494559	46494559	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	46494559	46494559	T	-	DEL	MAST2	ENST00000361297	human	ensembl	74_37	+1	known	frame_shift_del	c.2172	p.F726fs	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST2	HGNC	ENSG00000086015				269	1	0.37037	225	37	14.1221
TSPAN1	0	genome.wustl.edu	37	1	46650191	46650192	+	RNA	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	46650191	46650192	-	G	INS	TSPAN1	ENST00000482143	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	TSPAN1	HGNC	ENSG00000117472				123	0	0	81	19	19
LRRC41	0	genome.wustl.edu	37	1	46726877	46726877	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	46726877	46726877	T	-	DEL	LRRC41	ENST00000496156	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LRRC41	HGNC	ENSG00000132128				36	0	0	9	9	50
CYP4Z1	0	genome.wustl.edu	37	1	47581140	47581140	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	47581140	47581140	A	-	DEL	CYP4Z1	ENST00000471598	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	CYP4Z1	HGNC	ENSG00000186160				24	0	0	3	13	81.25
HOOK1	0	genome.wustl.edu	37	1	60314140	60314140	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	60314140	60314140	A	-	DEL	HOOK1	ENST00000371208	human	ensembl	74_37	+1	known	frame_shift_del	c.1083	p.A364fs	0.150	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709				107	0	0	50	21	29.5775
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				48	0	0	10	17	62.963
KANK4	0	genome.wustl.edu	37	1	62740427	62740427	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	62740427	62740427	G	-	DEL	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	frame_shift_del	c.349	p.Q117fs	0.001	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854				90	0	0	48	20	29.4118
DOCK7	0	genome.wustl.edu	37	1	62941104	62941104	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	62941104	62941104	A	-	DEL	DOCK7	ENST00000467758	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.057	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641				26	0	0	16	7	30.4348
ITGB3BP	0	genome.wustl.edu	37	1	63912547	63912547	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	63912547	63912547	T	-	DEL	ITGB3BP	ENST00000492655	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ITGB3BP	HGNC	ENSG00000142856				43	0	0	43	6	12.2449
KLHL21	0	genome.wustl.edu	37	1	6653683	6653683	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	6653683	6653683	C	-	DEL	KLHL21	ENST00000377658	human	ensembl	74_37	-1	known	frame_shift_del	c.1536	p.K513fs	0.991	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL21	HGNC	ENSG00000162413				51	0	0	32	9	21.9512
WDR78	0	genome.wustl.edu	37	1	67390426	67390426	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	67390426	67390426	T	-	DEL	WDR78	ENST00000371026	human	ensembl	74_37	-1	known	frame_shift_del	c.89	p.K30fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763				166	0	0	139	38	21.4689
ZRANB2	0	genome.wustl.edu	37	1	71535065	71535065	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	71535065	71535065	T	-	DEL	ZRANB2	ENST00000487510	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZRANB2	HGNC	ENSG00000132485				71	0	0	48	6	11.1111
ST6GALNAC5	0	genome.wustl.edu	37	1	77334277	77334279	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	77334277	77334279	GCA	-	DEL	ST6GALNAC5	ENST00000477717	human	ensembl	74_37	+1	known	in_frame_del	c.111_113	p.Q41in_frame_del	1.000:1.000:1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GALNAC5	HGNC	ENSG00000117069				52	0	0	30	9	23.0769
FAM73A	0	genome.wustl.edu	37	1	78326950	78326950	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	78326950	78326950	T	-	DEL	FAM73A	ENST00000370791	human	ensembl	74_37	+1	known	frame_shift_del	c.1317	p.L441fs	1.000	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73A	HGNC	ENSG00000180488				81	0	0	31	15	32.6087
RERE	0	genome.wustl.edu	37	1	8415652	8415652	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	8415652	8415652	G	-	DEL	RERE	ENST00000337907	human	ensembl	74_37	-1	known	frame_shift_del	c.4494	p.Y1499fs	0.910	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				26	0	0	20	10	33.3333
CTBS	0	genome.wustl.edu	37	1	85020568	85020568	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	85020568	85020568	T	-	DEL	CTBS	ENST00000477677	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTBS	HGNC	ENSG00000117151				18	0	0	5	3	37.5
ODF2L	0	genome.wustl.edu	37	1	86826141	86826142	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	86826141	86826142	-	T	INS	ODF2L	ENST00000317336	human	ensembl	74_37	-1	known	frame_shift_ins	c.1222_1221	p.Q407fs	0.991:0.038	NULL	NULL	-	no_errors	ODF2L	HGNC	ENSG00000122417				81	0	0	41	11	21.1538
MTF2	0	genome.wustl.edu	37	1	93602676	93602676	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	93602676	93602676	A	-	DEL	MTF2	ENST00000467953	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MTF2	HGNC	ENSG00000143033				18	0	0	11	4	26.6667
DNTTIP2	0	genome.wustl.edu	37	1	94335461	94335461	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	94335461	94335461	T	-	DEL	DNTTIP2	ENST00000436063	human	ensembl	74_37	-1	known	frame_shift_del	c.2217	p.A740fs	0.993	NULL	pfam_Fcf2	-	no_errors	DNTTIP2	HGNC	ENSG00000067334				59	0	0	17	10	37.037
AGRN	0	genome.wustl.edu	37	1	980571	980571	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	1	980571	980571	C	-	DEL	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	frame_shift_del	c.2285	p.L764fs	0.001	NULL	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				34	0	0	31	19	38
CNNM1	0	genome.wustl.edu	37	10	101089318	101089318	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	101089318	101089318	G	-	DEL	CNNM1	ENST00000356713	human	ensembl	74_37	+1	known	frame_shift_del	c.174	p.G60fs	1.000	NULL	pfam_DUF21,pfam_CBS_dom	-	no_errors	CNNM1	HGNC	ENSG00000119946				13	0	0	12	9	42.8571
CWF19L1	0	genome.wustl.edu	37	10	101992924	101992925	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	101992924	101992925	AA	-	DEL	CWF19L1	ENST00000468709	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.167:0.180	-	-	-	no_errors	CWF19L1	HGNC	ENSG00000095485				58	0	0	25	33	56.8966
HIF1AN	0	genome.wustl.edu	37	10	102306303	102306303	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	102306303	102306303	G	-	DEL	HIF1AN	ENST00000299163	human	ensembl	74_37	+1	known	frame_shift_del	c.859	p.I289fs	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HIF1AN	HGNC	ENSG00000166135				200	0	0	81	48	37.2093
FAM178A	0	genome.wustl.edu	37	10	102684424	102684424	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	102684424	102684424	C	-	DEL	FAM178A	ENST00000370269	human	ensembl	74_37	+1	known	frame_shift_del	c.1666	p.P557fs	1.000	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906				135	0	0	110	7	5.98291
NFKB2	0	genome.wustl.edu	37	10	104160987	104160987	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	104160987	104160987	C	-	DEL	NFKB2	ENST00000369966	human	ensembl	74_37	+1	known	frame_shift_del	c.2122	p.P709fs	0.982	superfamily_Ankyrin_rpt-contain_dom	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150				100	0	0	100	8	7.40741
NFKB2	0	genome.wustl.edu	37	10	104161207	104161207	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	104161207	104161207	T	-	DEL	NFKB2	ENST00000369966	human	ensembl	74_37	+1	known	frame_shift_del	c.2225	p.V742fs	1.000	NULL	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150				81	0	0	45	27	37.5
PSD	0	genome.wustl.edu	37	10	104175781	104175781	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	104175781	104175781	G	-	DEL	PSD	ENST00000020673	human	ensembl	74_37	-1	known	frame_shift_del	c.750	p.S251fs	1.000	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915				28	0	0	13	14	51.8519
ADD3	0	genome.wustl.edu	37	10	111893350	111893350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	111893350	111893350	A	-	DEL	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.K701fs	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				111	0	0	60	22	26.8293
TRUB1	0	genome.wustl.edu	37	10	116730192	116730192	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	116730192	116730192	C	-	DEL	TRUB1	ENST00000298746	human	ensembl	74_37	+1	known	frame_shift_del	c.589	p.L199fs	1.000	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	-	no_errors	TRUB1	HGNC	ENSG00000165832				198	1	0.502513	85	22	20.5607
ATRNL1	0	genome.wustl.edu	37	10	116887435	116887435	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	116887435	116887435	T	-	DEL	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	frame_shift_del	c.570	p.F192fs	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518				19	0	0	12	7	36.8421
TIAL1	0	genome.wustl.edu	37	10	121335157	121335157	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	121335157	121335157	T	-	DEL	TIAL1	ENST00000463089	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	TIAL1	HGNC	ENSG00000151923				179	1	0.555556	86	42	32.8125
INPP5F	0	genome.wustl.edu	37	10	121558113	121558114	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	121558113	121558114	-	A	INS	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	frame_shift_ins	c.1107_1108	p.Q371fs	1.000:1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				78	0	0	32	10	23.8095
TACC2	0	genome.wustl.edu	37	10	123970582	123970582	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	123970582	123970582	C	-	DEL	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	frame_shift_del	c.6642	p.P2216fs	0.015	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				79	0	0	48	24	33.3333
DMBT1	0	genome.wustl.edu	37	10	124402883	124402883	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	124402883	124402883	C	-	DEL	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	frame_shift_del	c.7211	p.P2406fs	0.000	NULL	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				47	0	0	29	9	23.6842
C10orf88	0	genome.wustl.edu	37	10	124711510	124711510	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	124711510	124711510	T	-	DEL	C10orf88	ENST00000481909	human	ensembl	74_37	-1	known	frame_shift_del	c.401	p.N134fs	0.704	NULL	NULL	-	no_errors	C10orf88	HGNC	ENSG00000119965				22	0	0	8	8	50
HMX2	0	genome.wustl.edu	37	10	124908149	124908149	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	124908149	124908149	T	-	DEL	HMX2	ENST00000339992	human	ensembl	74_37	+1	known	frame_shift_del	c.255	p.P87fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HMX2	HGNC	ENSG00000188816				82	0	0	51	18	26.087
CHST15	0	genome.wustl.edu	37	10	125780753	125780756	+	Frame_Shift_Del	DEL	GGGG	GGGG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	GGGG	GGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	125780753	125780756	GGGG	-	DEL	CHST15	ENST00000421115	human	ensembl	74_37	-1	known	frame_shift_del	c.1366_1363	p.P455fs	0.985:0.982:0.979:0.977	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	CHST15	HGNC	ENSG00000182022				22	0	0	19	9	32.1429
OPTN	0	genome.wustl.edu	37	10	13151191	13151192	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	13151191	13151192	-	C	INS	OPTN	ENST00000263036	human	ensembl	74_37	+1	known	frame_shift_ins	c.69_70	p.H25fs	1.000:1.000	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240				181	0	0	136	41	23.1638
OPTN	0	genome.wustl.edu	37	10	13151192	13151192	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	13151192	13151192	C	-	DEL	OPTN	ENST00000263036	human	ensembl	74_37	+1	known	frame_shift_del	c.70	p.H26fs	1.000	NULL	pfam_NEMO_N	-	no_errors	OPTN	HGNC	ENSG00000123240				181	0	0	147	30	16.9492
EBF3	0	genome.wustl.edu	37	10	131666125	131666125	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	131666125	131666125	C	-	DEL	EBF3	ENST00000355311	human	ensembl	74_37	-1	known	frame_shift_del	c.833	p.G278fs	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF3	HGNC	ENSG00000108001				72	0	0	66	27	29.0323
KNDC1	0	genome.wustl.edu	37	10	135015044	135015044	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	135015044	135015044	C	-	DEL	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	frame_shift_del	c.3035	p.C1014fs	0.327	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				122	0	0	102	48	32
TUBGCP2	0	genome.wustl.edu	37	10	135093332	135093332	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	135093332	135093332	G	-	DEL	TUBGCP2	ENST00000543663	human	ensembl	74_37	-1	known	frame_shift_del	c.2731	p.Q911fs	0.463	NULL	pfam_TUBGCP,superfamily_Ocr	-	no_errors	TUBGCP2	HGNC	ENSG00000130640				12	0	0	13	5	27.7778
ST8SIA6	0	genome.wustl.edu	37	10	17363321	17363321	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	17363321	17363321	T	-	DEL	ST8SIA6	ENST00000377602	human	ensembl	74_37	-1	known	frame_shift_del	c.753	p.A252fs	0.024	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA6	HGNC	ENSG00000148488				84	0	0	38	13	25.4902
DNAJC1	0	genome.wustl.edu	37	10	22208818	22208818	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	22208818	22208818	T	-	DEL	DNAJC1	ENST00000376980	human	ensembl	74_37	-1	known	frame_shift_del	c.578	p.K193fs	1.000	NULL	pfam_DnaJ_domain,pfam_SANT/Myb,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC1	HGNC	ENSG00000136770				142	0	0	57	22	27.8481
ARHGAP21	0	genome.wustl.edu	37	10	24889807	24889807	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	24889807	24889807	C	-	DEL	ARHGAP21	ENST00000396432	human	ensembl	74_37	-1	known	frame_shift_del	c.2900	p.G967fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863				137	0	0	60	17	22.0779
MYO3A	0	genome.wustl.edu	37	10	26385330	26385330	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	26385330	26385330	T	-	DEL	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	frame_shift_del	c.1583	p.Y530fs	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				52	0	0	21	9	30
SVIL	0	genome.wustl.edu	37	10	29760116	29760116	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	29760116	29760116	C	-	DEL	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	frame_shift_del	c.5586	p.M1863fs	0.474	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				35	0	0	18	12	40
CCDC7	0	genome.wustl.edu	37	10	32740643	32740643	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	32740643	32740643	G	-	DEL	CCDC7	ENST00000277657	human	ensembl	74_37	+1	known	frame_shift_del	c.73	p.G25fs	0.000	NULL	NULL	-	no_errors	CCDC7	HGNC	ENSG00000216937				70	0	0	37	14	27.451
ZNF248	0	genome.wustl.edu	37	10	38121593	38121593	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	38121593	38121593	A	-	DEL	ZNF248	ENST00000357328	human	ensembl	74_37	-1	known	frame_shift_del	c.690	p.F230fs	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105				72	0	0	28	16	36.3636
ZFAND4	0	genome.wustl.edu	37	10	46121400	46121400	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	46121400	46121400	A	-	DEL	ZFAND4	ENST00000344646	human	ensembl	74_37	-1	known	frame_shift_del	c.1871	p.L624fs	0.871	NULL	pfam_Ubiquitin_dom,pfam_Znf_AN1,smart_Ubiquitin_dom,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	ZFAND4	HGNC	ENSG00000172671				95	0	0	40	8	16.6667
ENSG00000235939	0	genome.wustl.edu	37	10	50680934	50680934	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	50680934	50680934	A	-	DEL	ENSG00000235939	ENST00000423283	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-123B3.2	Clone_based_vega_gene	ENSG00000235939				38	0	0	22	2	8.33333
HERC4	0	genome.wustl.edu	37	10	69716603	69716604	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	69716603	69716604	AA	-	DEL	HERC4	ENST00000480158	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HERC4	HGNC	ENSG00000148634				51	0	0	22	9	29.0323
HNRNPH3	0	genome.wustl.edu	37	10	70097823	70097824	+	RNA	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	70097823	70097824	-	G	INS	HNRNPH3	ENST00000469172	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.959:1.000	-	-	-	no_errors	HNRNPH3	HGNC	ENSG00000096746				51	0	0	18	13	41.9355
COL13A1	0	genome.wustl.edu	37	10	71654444	71654444	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	71654444	71654444	A	-	DEL	COL13A1	ENST00000356340	human	ensembl	74_37	+1	known	frame_shift_del	c.617	p.G208fs	1.000	pfam_Collagen	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467				92	0	0	66	15	18.5185
PLAU	0	genome.wustl.edu	37	10	75673437	75673438	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	75673437	75673438	-	G	INS	PLAU	ENST00000372764	human	ensembl	74_37	+1	known	frame_shift_ins	c.601_602	p.S204fs	0.156:0.201	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Kringle,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PLAU	HGNC	ENSG00000122861				173	0	0	119	49	29.1667
KIN	0	genome.wustl.edu	37	10	7801876	7801876	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	7801876	7801876	A	-	DEL	KIN	ENST00000379562	human	ensembl	74_37	-1	known	frame_shift_del	c.1096	p.S366fs	1.000	NULL	pfam_DNA/RNA-bd_Kin17_cons_domain	-	no_errors	KIN	HGNC	ENSG00000151657				77	0	0	32	18	36
GATA3	0	genome.wustl.edu	37	10	8100728	8100728	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	8100728	8100728	C	-	DEL	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	frame_shift_del	c.702	p.S237fs	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				107	0	0	47	22	31.8841
FAM35A	0	genome.wustl.edu	37	10	88911220	88911220	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	88911220	88911220	A	-	DEL	FAM35A	ENST00000298786	human	ensembl	74_37	+1	known	frame_shift_del	c.109	p.I39fs	0.918	NULL	NULL	-	no_errors	FAM35A	HGNC	ENSG00000122376				52	0	0	22	11	33.3333
ENSG00000196566	0	genome.wustl.edu	37	10	89419662	89419663	+	RNA	INS	-	-	GCC			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	89419662	89419663	-	GCC	INS	ENSG00000196566	ENST00000354527	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.003	-	-	-	no_errors	RP11-57C13.3	Clone_based_vega_gene	ENSG00000196566				31	0	0	8	7	46.6667
SLC16A12	0	genome.wustl.edu	37	10	91203597	91203598	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	91203597	91203598	-	A	INS	SLC16A12	ENST00000371790	human	ensembl	74_37	-1	known	frame_shift_ins	c.220_219	p.V73fs	1.000:1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A12	HGNC	ENSG00000152779				36	0	0	16	9	36
KIF20B	0	genome.wustl.edu	37	10	91483748	91483748	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	91483748	91483748	A	-	DEL	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	frame_shift_del	c.1750	p.K586fs	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				78	0	0	48	11	18.6441
MYOF	0	genome.wustl.edu	37	10	95157026	95157026	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	95157026	95157026	T	-	DEL	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	frame_shift_del	c.1312	p.I438fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				43	0	0	14	5	26.3158
ENSG00000228553	0	genome.wustl.edu	37	10	95987002	95987002	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	95987002	95987002	A	-	DEL	ENSG00000228553	ENST00000447227	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	RP11-391J2.3	Clone_based_vega_gene	ENSG00000228553				31	0	0	13	12	48
HELLS	0	genome.wustl.edu	37	10	96352051	96352051	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	96352051	96352051	A	-	DEL	HELLS	ENST00000371332	human	ensembl	74_37	+1	known	frame_shift_del	c.1971	p.R660fs	0.958	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELLS	HGNC	ENSG00000119969				65	0	0	29	16	35.5556
TM9SF3	0	genome.wustl.edu	37	10	98287018	98287018	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	98287018	98287018	A	-	DEL	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	frame_shift_del	c.1654	p.Y552fs	1.000	NULL	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				46	0	0	23	6	20.6897
TM9SF3	0	genome.wustl.edu	37	10	98336475	98336475	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	10	98336475	98336475	T	-	DEL	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	frame_shift_del	c.214	p.S72fs	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				132	0	0	71	25	26.0417
CASP5	0	genome.wustl.edu	37	11	104874011	104874011	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	104874011	104874011	T	-	DEL	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	frame_shift_del	c.572	p.N191fs	0.006	pirsf_Caspase_IL-1_beta	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757				152	0	0	64	38	37.2549
CTR9	0	genome.wustl.edu	37	11	10776596	10776596	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	10776596	10776596	A	-	DEL	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	frame_shift_del	c.236	p.D81fs	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				155	0	0	61	42	40.7767
CUL5	0	genome.wustl.edu	37	11	107965658	107965658	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	107965658	107965658	A	-	DEL	CUL5	ENST00000393094	human	ensembl	74_37	+1	known	frame_shift_del	c.1687	p.N565fs	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266				68	0	0	32	8	20
ATM	0	genome.wustl.edu	37	11	108216477	108216477	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	108216477	108216477	A	-	DEL	ATM	ENST00000278616	human	ensembl	74_37	+1	known	frame_shift_del	c.8426	p.K2811fs	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				158	0	0	58	30	34.0909
ZBTB16	0	genome.wustl.edu	37	11	113934299	113934300	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	113934299	113934300	-	A	INS	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	frame_shift_ins	c.277_278	p.A94fs	1.000:1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906				70	0	0	39	15	27.7778
TTC36	0	genome.wustl.edu	37	11	118399370	118399370	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	118399370	118399370	G	-	DEL	TTC36	ENST00000302783	human	ensembl	74_37	+1	known	frame_shift_del	c.171	p.V59fs	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC36	HGNC	ENSG00000172425				86	0	0	49	25	33.7838
MFRP	0	genome.wustl.edu	37	11	119213688	119213688	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	119213688	119213688	G	-	DEL	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	frame_shift_del	c.1150	p.H384fs	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				18	0	0	10	8	44.4444
OAF	0	genome.wustl.edu	37	11	120097608	120097608	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	120097608	120097608	G	-	DEL	OAF	ENST00000328965	human	ensembl	74_37	+1	known	frame_shift_del	c.450	p.A152fs	1.000	NULL	NULL	-	no_errors	OAF	HGNC	ENSG00000184232				69	0	0	35	32	47.7612
JAM3	0	genome.wustl.edu	37	11	134018468	134018468	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	134018468	134018468	G	-	DEL	JAM3	ENST00000529443	human	ensembl	74_37	+1	known	frame_shift_del	c.874	p.V294fs	0.989	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	JAM3	HGNC	ENSG00000166086				95	0	0	42	14	25
BRSK2	0	genome.wustl.edu	37	11	1466880	1466880	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1466880	1466880	C	-	DEL	BRSK2	ENST00000382179	human	ensembl	74_37	+1	known	frame_shift_del	c.1195	p.R401fs	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672				19	0	0	8	8	50
KRTAP5-1	0	genome.wustl.edu	37	11	1605922	1605923	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	1605922	1605923	-	C	INS	KRTAP5-1	ENST00000382171	human	ensembl	74_37	-1	known	frame_shift_ins	c.558_557	p.C187fs	0.985:0.441	NULL	NULL	-	no_errors	KRTAP5-1	HGNC	ENSG00000205869				115	0	0	169	12	6.62983
SOX6	0	genome.wustl.edu	37	11	16339955	16339955	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	16339955	16339955	A	-	DEL	SOX6	ENST00000533658	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SOX6	HGNC	ENSG00000110693				69	0	0	54	15	21.7391
KCNC1	0	genome.wustl.edu	37	11	17794004	17794004	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	17794004	17794004	A	-	DEL	KCNC1	ENST00000265969	human	ensembl	74_37	+1	known	frame_shift_del	c.1363	p.K457fs	1.000	prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159				106	0	0	56	32	36.3636
TRPM5	0	genome.wustl.edu	37	11	2444209	2444209	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	2444209	2444209	C	-	DEL	TRPM5	ENST00000452833	human	ensembl	74_37	-1	known	frame_shift_del	c.58	p.E20fs	0.006	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985				106	0	0	80	6	6.97674
SIGIRR	0	genome.wustl.edu	37	11	406540	406541	+	Splice_Site	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	406540	406541	-	G	INS	SIGIRR	ENST00000382520	human	ensembl	74_37	-1	known	splice_site_ins	c.880-3_880-2	e8-2	0.953:0.630	-	-	-	no_errors	SIGIRR	HGNC	ENSG00000185187				71	0	0	35	16	31.3725
HNRNPKP3	0	genome.wustl.edu	37	11	43283606	43283607	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	43283606	43283607	AA	-	DEL	HNRNPKP3	ENST00000511537	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.986:0.995	-	-	-	no_errors	HNRNPKP3	HGNC	ENSG00000251557				10	0	0	4	11	73.3333
GYLTL1B	0	genome.wustl.edu	37	11	45948373	45948373	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	45948373	45948373	C	-	DEL	GYLTL1B	ENST00000325468	human	ensembl	74_37	+1	known	frame_shift_del	c.1276	p.R428fs	0.023	NULL	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905				93	0	0	55	28	33.7349
LRP4	0	genome.wustl.edu	37	11	46880747	46880748	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	46880747	46880748	-	C	INS	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	frame_shift_ins	c.5505_5504	p.L1836fs	1.000:1.000	NULL	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569				106	0	0	70	32	31.3725
LRP4	0	genome.wustl.edu	37	11	46920202	46920202	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	46920202	46920202	C	-	DEL	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	frame_shift_del	c.703	p.E235fs	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569				274	0	0	173	47	21.3636
OR51E2	0	genome.wustl.edu	37	11	4703475	4703475	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	4703475	4703475	A	-	DEL	OR51E2	ENST00000396950	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.F156fs	0.027	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332				89	0	0	56	35	38.4615
ARFGAP2	0	genome.wustl.edu	37	11	47196853	47196853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	47196853	47196853	A	-	DEL	ARFGAP2	ENST00000524782	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.R93fs	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182				101	0	0	56	83	59.7122
AGBL2	0	genome.wustl.edu	37	11	47689211	47689211	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	47689211	47689211	T	-	DEL	AGBL2	ENST00000357610	human	ensembl	74_37	-1	known	frame_shift_del	c.2258	p.K753fs	1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL2	HGNC	ENSG00000165923				75	0	0	15	14	48.2759
FNBP4	0	genome.wustl.edu	37	11	47746087	47746087	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	47746087	47746087	G	-	DEL	FNBP4	ENST00000263773	human	ensembl	74_37	-1	known	frame_shift_del	c.2252	p.P751fs	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	FNBP4	HGNC	ENSG00000109920				242	0	0	126	62	32.9787
ENSG00000254815	0	genome.wustl.edu	37	11	558069	558069	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	558069	558069	G	-	DEL	ENSG00000254815	ENST00000527620	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-496I9.1	Clone_based_vega_gene	ENSG00000254815				58	0	0	30	16	34.7826
OR5M3	0	genome.wustl.edu	37	11	56237709	56237709	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	56237709	56237709	T	-	DEL	OR5M3	ENST00000312240	human	ensembl	74_37	-1	known	frame_shift_del	c.265	p.T89fs	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M3	HGNC	ENSG00000174937				143	0	0	61	26	29.8851
OR5M8	0	genome.wustl.edu	37	11	56258665	56258665	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	56258665	56258665	A	-	DEL	OR5M8	ENST00000327216	human	ensembl	74_37	-1	known	frame_shift_del	c.182	p.F61fs	0.870	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M8	HGNC	ENSG00000181371				137	0	0	88	46	34.3284
TRIM5	0	genome.wustl.edu	37	11	5687321	5687323	+	Splice_Site	DEL	AAA	AAA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	5687321	5687323	AAA	-	DEL	TRIM5	ENST00000305836	human	ensembl	74_37	-1	known	splice_site_del	c.760-4_760-2	e5-2	0.002:0.005:0.007	-	-	-	no_errors	TRIM5	HGNC	ENSG00000132256				42	0	0	11	7	38.8889
LRRC55	0	genome.wustl.edu	37	11	56949609	56949610	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	56949609	56949610	-	C	INS	LRRC55	ENST00000497933	human	ensembl	74_37	+1	known	frame_shift_ins	c.242_243	p.V83fs	1.000:1.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC55	HGNC	ENSG00000183908				71	0	0	55	28	33.7349
P2RX3	0	genome.wustl.edu	37	11	57116158	57116158	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	57116158	57116158	C	-	DEL	P2RX3	ENST00000263314	human	ensembl	74_37	+1	known	frame_shift_del	c.543	p.L183fs	0.999	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X3_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX3	HGNC	ENSG00000109991				108	0	0	54	23	29.8701
LGALS12	0	genome.wustl.edu	37	11	63283775	63283775	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	63283775	63283775	G	-	DEL	LGALS12	ENST00000340246	human	ensembl	74_37	+1	known	frame_shift_del	c.924	p.A310fs	0.518	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS12	HGNC	ENSG00000133317				97	0	0	42	25	37.3134
RTN3	0	genome.wustl.edu	37	11	63525656	63525656	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	63525656	63525656	A	-	DEL	RTN3	ENST00000377819	human	ensembl	74_37	+1	known	frame_shift_del	c.3082	p.K1030fs	1.000	pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				52	0	0	33	7	17.5
RPS6KA4	0	genome.wustl.edu	37	11	64132922	64132922	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64132922	64132922	C	-	DEL	RPS6KA4	ENST00000334205	human	ensembl	74_37	+1	known	frame_shift_del	c.1056	p.R354fs	0.995	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA4	HGNC	ENSG00000162302				56	0	0	32	5	13.5135
PYGM	0	genome.wustl.edu	37	11	64520597	64520597	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	64520597	64520597	G	-	DEL	PYGM	ENST00000164139	human	ensembl	74_37	-1	known	frame_shift_del	c.1466	p.P489fs	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGM	HGNC	ENSG00000068976				480	0	0	285	119	29.4554
SLC25A45	0	genome.wustl.edu	37	11	65144465	65144465	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	65144465	65144465	G	-	DEL	SLC25A45	ENST00000398802	human	ensembl	74_37	-1	known	frame_shift_del	c.422	p.P141fs	0.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A45	HGNC	ENSG00000162241				72	0	0	33	23	41.0714
CTSW	0	genome.wustl.edu	37	11	65650873	65650873	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	65650873	65650873	G	-	DEL	CTSW	ENST00000307886	human	ensembl	74_37	+1	known	frame_shift_del	c.998	p.A335fs	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSW	HGNC	ENSG00000172543				160	0	0	94	56	37.3333
SF3B2	0	genome.wustl.edu	37	11	65836146	65836146	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	65836146	65836146	A	-	DEL	SF3B2	ENST00000322535	human	ensembl	74_37	+1	known	frame_shift_del	c.2618	p.K875fs	1.000	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_dom,smart_SAP_dom,smart_PSP,pfscan_SAP_dom	-	no_errors	SF3B2	HGNC	ENSG00000087365				94	0	0	42	19	31.1475
KLC2	0	genome.wustl.edu	37	11	66033664	66033664	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	66033664	66033664	C	-	DEL	KLC2	ENST00000316924	human	ensembl	74_37	+1	known	frame_shift_del	c.1703	p.Q570fs	0.984	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC2	HGNC	ENSG00000174996				65	0	0	37	11	22.9167
ENSG00000245156	0	genome.wustl.edu	37	11	66039143	66039143	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	66039143	66039143	A	-	DEL	ENSG00000245156	ENST00000501708	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	RP11-867G23.3	Clone_based_vega_gene	ENSG00000245156				13	0	0	4	4	50
TPP1	0	genome.wustl.edu	37	11	6636152	6636152	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	6636152	6636152	G	-	DEL	TPP1	ENST00000299427	human	ensembl	74_37	-1	known	frame_shift_del	c.1496	p.P499fs	0.998	superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S53_propep,pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept,smart_Peptidase_S53_propep	-	no_errors	TPP1	HGNC	ENSG00000166340				307	0	0	176	99	36
PC	0	genome.wustl.edu	37	11	66617432	66617432	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	66617432	66617432	C	-	DEL	PC	ENST00000393958	human	ensembl	74_37	-1	known	frame_shift_del	c.2874	p.F959fs	0.230	pfam_Carboxylase_cons_dom,pirsf_Pyruv_COase,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599				87	0	0	50	35	41.1765
LRFN4	0	genome.wustl.edu	37	11	66627324	66627324	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	66627324	66627324	G	-	DEL	LRFN4	ENST00000309602	human	ensembl	74_37	+1	known	frame_shift_del	c.1566	p.G524fs	0.998	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN4	HGNC	ENSG00000173621				28	0	0	18	11	37.931
C2CD3	0	genome.wustl.edu	37	11	73829364	73829364	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	73829364	73829364	T	-	DEL	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	frame_shift_del	c.1429	p.I477fs	0.966	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				111	0	0	35	25	41.6667
POLD3	0	genome.wustl.edu	37	11	74336575	74336575	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	74336575	74336575	A	-	DEL	POLD3	ENST00000263681	human	ensembl	74_37	+1	known	frame_shift_del	c.856	p.A288fs	0.999	pfam_DNA_polymerase_subunit_Cdc27	pfam_DNA_polymerase_subunit_Cdc27	-	no_errors	POLD3	HGNC	ENSG00000077514				46	0	0	33	15	31.25
USP35	0	genome.wustl.edu	37	11	77920856	77920856	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	77920856	77920856	C	-	DEL	USP35	ENST00000529308	human	ensembl	74_37	+1	known	frame_shift_del	c.1955	p.T655fs	0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				36	0	0	21	11	34.375
ENSG00000254420	0	genome.wustl.edu	37	11	78154811	78154812	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	78154811	78154812	AA	-	DEL	ENSG00000254420	ENST00000534168	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.006	-	-	-	no_errors	RP11-452H21.1	Clone_based_vega_gene	ENSG00000254420				52	0	0	23	21	47.7273
OR10A6	0	genome.wustl.edu	37	11	7949596	7949596	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	7949596	7949596	A	-	DEL	OR10A6	ENST00000309838	human	ensembl	74_37	-1	known	frame_shift_del	c.614	p.L205fs	0.982	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A6	HGNC	ENSG00000175393				75	0	0	49	8	14.0351
ST5	0	genome.wustl.edu	37	11	8751798	8751798	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	8751798	8751798	C	-	DEL	ST5	ENST00000313726	human	ensembl	74_37	-1	known	frame_shift_del	c.1039	p.E347fs	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444				105	0	0	124	8	6.06061
SWAP70	0	genome.wustl.edu	37	11	9771475	9771476	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	9771475	9771476	AG	-	DEL	SWAP70	ENST00000318950	human	ensembl	74_37	+1	known	frame_shift_del	c.1716_1717	p.K576fs	0.738:0.782	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_EF_hand_dom,pfscan_Pleckstrin_homology	-	no_errors	SWAP70	HGNC	ENSG00000133789				66	0	0	50	14	21.875
CNTN5	0	genome.wustl.edu	37	11	99715605	99715605	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	11	99715605	99715605	T	-	DEL	CNTN5	ENST00000279463	human	ensembl	74_37	+1	known	frame_shift_del	c.299	p.F101fs	1.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN5	HGNC	ENSG00000149972				65	0	0	44	12	21.4286
KLRK1	0	genome.wustl.edu	37	12	10532376	10532376	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	10532376	10532376	A	-	DEL	KLRK1	ENST00000240618	human	ensembl	74_37	-1	known	frame_shift_del	c.164	p.F55fs	0.002	pfam_Herpes_UL45-like	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	KLRK1	HGNC	ENSG00000213809				57	0	0	25	9	26.4706
BTBD11	0	genome.wustl.edu	37	12	107937778	107937778	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	107937778	107937778	C	-	DEL	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	frame_shift_del	c.1352	p.L453fs	1.000	NULL	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				46	0	0	34	23	40.3509
MED13L	0	genome.wustl.edu	37	12	116457653	116457653	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	116457653	116457653	T	-	DEL	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	frame_shift_del	c.750	p.E251fs	0.998	pfam_Mediator_Med13_N_met/fun	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				101	0	0	35	19	35.1852
ETV6	0	genome.wustl.edu	37	12	11803022	11803022	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	11803022	11803022	A	-	DEL	ETV6	ENST00000541426	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ETV6	HGNC	ENSG00000139083				113	0	0	84	39	31.7073
PEBP1	0	genome.wustl.edu	37	12	118582700	118582701	+	RNA	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	118582700	118582701	-	C	INS	PEBP1	ENST00000542939	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PEBP1	HGNC	ENSG00000089220				22	0	0	15	3	16.6667
DYNLL1	0	genome.wustl.edu	37	12	120935792	120935792	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	120935792	120935792	C	-	DEL	DYNLL1	ENST00000552316	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	DYNLL1	HGNC	ENSG00000088986				12	0	0	5	5	50
RNF10	0	genome.wustl.edu	37	12	121014514	121014514	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	121014514	121014514	T	-	DEL	RNF10	ENST00000535470	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RNF10	HGNC	ENSG00000022840				106	1	0.934579	54	18	25
LRRC43	0	genome.wustl.edu	37	12	122685346	122685346	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	122685346	122685346	C	-	DEL	LRRC43	ENST00000339777	human	ensembl	74_37	+1	known	frame_shift_del	c.1674	p.I561fs	0.997	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113				90	0	0	46	23	33.3333
KNTC1	0	genome.wustl.edu	37	12	123052858	123052858	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	123052858	123052858	T	-	DEL	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	frame_shift_del	c.1655	p.L554fs	1.000	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				180	1	0.552486	107	29	21.3235
ARL6IP4	0	genome.wustl.edu	37	12	123467067	123467068	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	123467067	123467068	AC	-	DEL	ARL6IP4	ENST00000315580	human	ensembl	74_37	+1	known	frame_shift_del	c.1008_1009	p.H337fs	0.844:0.998	pfam_Nucl_RNA-splicing_assoc_SR-25	pfam_Nucl_RNA-splicing_assoc_SR-25	-	no_errors	ARL6IP4	HGNC	ENSG00000182196				59	0	0	35	20	36.3636
C12orf65	0	genome.wustl.edu	37	12	123741526	123741526	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	123741526	123741526	A	-	DEL	C12orf65	ENST00000253233	human	ensembl	74_37	+1	known	frame_shift_del	c.449	p.K152fs	0.997	NULL	pfam_Pep_chain_release_fac_I_II	-	no_errors	C12orf65	HGNC	ENSG00000130921				49	0	0	40	6	13.0435
SNRNP35	0	genome.wustl.edu	37	12	123950525	123950525	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	123950525	123950525	A	-	DEL	SNRNP35	ENST00000412157	human	ensembl	74_37	+1	known	frame_shift_del	c.453	p.K153fs	0.028	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRNP35	HGNC	ENSG00000184209				140	0	0	109	46	29.6774
CCDC92	0	genome.wustl.edu	37	12	124421800	124421800	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	124421800	124421800	G	-	DEL	CCDC92	ENST00000238156	human	ensembl	74_37	-1	known	frame_shift_del	c.801	p.I268fs	1.000	NULL	NULL	-	no_errors	CCDC92	HGNC	ENSG00000119242				89	0	0	53	5	8.62069
DDX51	0	genome.wustl.edu	37	12	132624667	132624668	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	132624667	132624668	-	G	INS	DDX51	ENST00000397333	human	ensembl	74_37	-1	known	frame_shift_ins	c.1751_1750	p.Q584fs	1.000:1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX51	HGNC	ENSG00000185163				137	0	0	108	19	14.9606
PLEKHA5	0	genome.wustl.edu	37	12	19460408	19460408	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	19460408	19460408	A	-	DEL	PLEKHA5	ENST00000510738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.931	-	-	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				36	0	0	18	19	51.3514
RECQL	0	genome.wustl.edu	37	12	21644547	21644547	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	21644547	21644547	T	-	DEL	RECQL	ENST00000421138	human	ensembl	74_37	-1	known	frame_shift_del	c.120	p.V41fs	0.001	NULL	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700				59	0	0	20	12	37.5
ITPR2	0	genome.wustl.edu	37	12	26568292	26568292	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	26568292	26568292	A	-	DEL	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	frame_shift_del	c.7250	p.L2417fs	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				127	1	0.78125	74	38	33.9286
ENSG00000257042	0	genome.wustl.edu	37	12	28122537	28122537	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	28122537	28122537	A	-	DEL	ENSG00000257042	ENST00000538113	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-993B23.3	Clone_based_vega_gene	ENSG00000257042				18	0	0	13	9	40.9091
TULP3	0	genome.wustl.edu	37	12	3040387	3040387	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	3040387	3040387	A	-	DEL	TULP3	ENST00000448120	human	ensembl	74_37	+1	known	frame_shift_del	c.677	p.E228fs	1.000	pfam_Tubby_C,superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP3	HGNC	ENSG00000078246				74	0	0	31	8	20.5128
CAPRIN2	0	genome.wustl.edu	37	12	30881696	30881696	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	30881696	30881696	T	-	DEL	CAPRIN2	ENST00000251071	human	ensembl	74_37	-1	known	frame_shift_del	c.1668	p.K556fs	0.010	NULL	pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CAPRIN2	HGNC	ENSG00000110888				163	0	0	113	10	8.13008
KIF21A	0	genome.wustl.edu	37	12	39720130	39720131	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	39720130	39720131	-	A	INS	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	frame_shift_ins	c.3337_3336	p.V1112fs	0.035:0.242	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				38	0	0	9	6	40
NDUFA9	0	genome.wustl.edu	37	12	4794302	4794303	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	4794302	4794303	AA	-	DEL	NDUFA9	ENST00000540688	human	ensembl	74_37	+1	putative	frame_shift_del	c.51_52	p.N21fs	0.000:0.000	NULL	NULL	-	no_errors	NDUFA9	HGNC	ENSG00000139180				18	0	0	1	4	80
GALNT8	0	genome.wustl.edu	37	12	4829850	4829850	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	4829850	4829850	T	-	DEL	GALNT8	ENST00000252318	human	ensembl	74_37	+1	known	frame_shift_del	c.7	p.W4fs	0.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035				104	0	0	44	25	36.2319
WNT1	0	genome.wustl.edu	37	12	49374348	49374348	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	49374348	49374348	G	-	DEL	WNT1	ENST00000293549	human	ensembl	74_37	+1	known	frame_shift_del	c.500	p.G169fs	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt1	-	no_errors	WNT1	HGNC	ENSG00000125084				20	0	0	25	8	24.2424
ENSG00000257913	0	genome.wustl.edu	37	12	49412461	49412461	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	49412461	49412461	G	-	DEL	ENSG00000257913	ENST00000547395	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.377	-	-	-	no_errors	RP11-386G11.5	Clone_based_vega_gene	ENSG00000257913				109	0	0	76	48	38.7097
KMT2D	0	genome.wustl.edu	37	12	49434492	49434492	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	49434492	49434492	G	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.7061	p.P2354fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				62	0	0	35	10	22.2222
POU6F1	0	genome.wustl.edu	37	12	51589812	51589812	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	51589812	51589812	G	-	DEL	POU6F1	ENST00000333640	human	ensembl	74_37	-1	known	frame_shift_del	c.190	p.L64fs	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU6F1	HGNC	ENSG00000184271				19	0	0	31	2	6.06061
GPR84	0	genome.wustl.edu	37	12	54757553	54757553	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	54757553	54757553	A	-	DEL	GPR84	ENST00000267015	human	ensembl	74_37	-1	known	frame_shift_del	c.83	p.V28fs	0.003	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR84	HGNC	ENSG00000139572				53	0	0	40	6	13.0435
OR9K2	0	genome.wustl.edu	37	12	55524393	55524393	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	55524393	55524393	T	-	DEL	OR9K2	ENST00000305377	human	ensembl	74_37	+1	known	frame_shift_del	c.841	p.F282fs	0.585	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9K2	HGNC	ENSG00000170605				200	0	0	73	37	33.6364
IKZF4	0	genome.wustl.edu	37	12	56418877	56418877	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	56418877	56418877	C	-	DEL	IKZF4	ENST00000262032	human	ensembl	74_37	+1	known	frame_shift_del	c.221	p.P75fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411				10	0	0	7	6	46.1538
STAT2	0	genome.wustl.edu	37	12	56744034	56744035	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	56744034	56744035	AA	-	DEL	STAT2	ENST00000557252	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040:0.013	-	-	-	no_errors	STAT2	HGNC	ENSG00000170581				58	0	0	38	13	25.4902
MYO1A	0	genome.wustl.edu	37	12	57422573	57422573	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	57422573	57422573	T	-	DEL	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	frame_shift_del	c.3098	p.K1033fs	1.000	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866				137	0	0	64	40	38.4615
MBD6	0	genome.wustl.edu	37	12	57919294	57919295	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	57919294	57919295	-	G	INS	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	frame_shift_ins	c.543_544	p.L183fs	1.000:1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				224	0	0	96	40	29.4118
MBD6	0	genome.wustl.edu	37	12	57921401	57921401	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	57921401	57921401	C	-	DEL	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	frame_shift_del	c.2194	p.Q734fs	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				223	0	0	116	57	32.948
VWF	0	genome.wustl.edu	37	12	6153464	6153464	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	6153464	6153464	G	-	DEL	VWF	ENST00000261405	human	ensembl	74_37	-1	known	frame_shift_del	c.2435	p.P812fs	0.703	pirsf_VWF,pfam_TIL_dom,superfamily_TIL_dom	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				63	0	0	47	10	17.5439
TMBIM4	0	genome.wustl.edu	37	12	66531937	66531937	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	66531937	66531937	A	-	DEL	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	frame_shift_del	c.520	p.Y174fs	0.028	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				39	0	0	35	10	22.2222
CHD4	0	genome.wustl.edu	37	12	6701672	6701672	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	6701672	6701672	T	-	DEL	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	frame_shift_del	c.2835	p.K945fs	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				149	0	0	68	34	33.3333
NUP107	0	genome.wustl.edu	37	12	69126366	69126366	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	69126366	69126366	A	-	DEL	NUP107	ENST00000401003	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NUP107	HGNC	ENSG00000111581				19	0	0	5	6	54.5455
ZFC3H1	0	genome.wustl.edu	37	12	72038781	72038781	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	72038781	72038781	T	-	DEL	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	frame_shift_del	c.1155	p.K385fs	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				49	0	0	21	8	27.5862
C1RL	0	genome.wustl.edu	37	12	7249400	7249400	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	7249400	7249400	G	-	DEL	C1RL	ENST00000266542	human	ensembl	74_37	-1	known	frame_shift_del	c.1051	p.L351fs	0.908	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	C1RL	HGNC	ENSG00000139178				85	0	0	73	7	8.75
E2F7	0	genome.wustl.edu	37	12	77449827	77449827	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	12	77449827	77449827	T	-	DEL	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	frame_shift_del	c.177	p.K59fs	0.976	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				124	0	0	72	41	36.2832
ARHGEF7	0	genome.wustl.edu	37	13	111767934	111767934	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	111767934	111767934	A	-	DEL	ARHGEF7	ENST00000375741	human	ensembl	74_37	+1	known	frame_shift_del	c.61	p.T23fs	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606				26	0	0	45	16	26.2295
UPF3A	0	genome.wustl.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	115057211	115057211	A	-	DEL	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	frame_shift_del	c.790	p.E267fs	0.943	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				29	0	0	9	8	47.0588
LATS2	0	genome.wustl.edu	37	13	21563349	21563349	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	21563349	21563349	G	-	DEL	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	frame_shift_del	c.570	p.Y191fs	0.661	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				143	0	0	93	23	19.8276
ATP12A	0	genome.wustl.edu	37	13	25262564	25262564	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	25262564	25262564	G	-	DEL	ATP12A	ENST00000218548	human	ensembl	74_37	+1	known	frame_shift_del	c.336	p.F115fs	1.000	pfam_ATPase_P-typ_cation-transptr_N,smart_ATPase_P-typ_cation-transptr_N,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP12A	HGNC	ENSG00000075673				519	0	0	290	168	36.6812
ATP8A2	0	genome.wustl.edu	37	13	26436484	26436484	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	26436484	26436484	T	-	DEL	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	frame_shift_del	c.3121	p.F1042fs	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				85	0	0	48	16	25
PDX1	0	genome.wustl.edu	37	13	28498713	28498713	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	28498713	28498713	C	-	DEL	PDX1	ENST00000381033	human	ensembl	74_37	+1	known	frame_shift_del	c.727	p.G245fs	0.739	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	PDX1	HGNC	ENSG00000139515				10	0	0	12	3	20
PDS5B	0	genome.wustl.edu	37	13	33344580	33344580	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	33344580	33344580	A	-	DEL	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	frame_shift_del	c.3946	p.K1318fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				55	0	0	33	23	41.0714
PDS5B	0	genome.wustl.edu	37	13	33344580	33344581	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	33344580	33344581	AA	-	DEL	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	frame_shift_del	c.3946_3947	p.K1318fs	1.000:1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				54	0	0	43	12	21.8182
KL	0	genome.wustl.edu	37	13	33635594	33635594	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	33635594	33635594	A	-	DEL	KL	ENST00000380099	human	ensembl	74_37	+1	known	frame_shift_del	c.2378	p.K795fs	0.994	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116				62	0	0	19	10	34.4828
SPG20	0	genome.wustl.edu	37	13	36909272	36909272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	36909272	36909272	A	-	DEL	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	frame_shift_del	c.696	p.F232fs	1.000	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				129	0	0	72	9	11.1111
EBPL	0	genome.wustl.edu	37	13	50235209	50235209	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	50235209	50235209	A	-	DEL	EBPL	ENST00000242827	human	ensembl	74_37	-1	known	frame_shift_del	c.516	p.F172fs	0.997	pfam_EBP	pfam_EBP	-	no_errors	EBPL	HGNC	ENSG00000123179				59	0	0	37	33	47.1429
DLEU2	0	genome.wustl.edu	37	13	50623343	50623343	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	50623343	50623343	T	-	DEL	DLEU2	ENST00000421758	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DLEU2	HGNC	ENSG00000231607				24	0	0	6	4	40
VPS36	0	genome.wustl.edu	37	13	52990249	52990249	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	52990249	52990249	A	-	DEL	VPS36	ENST00000462289	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	VPS36	HGNC	ENSG00000136100				71	0	0	22	16	42.1053
DIAPH3	0	genome.wustl.edu	37	13	60582734	60582734	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	60582734	60582734	T	-	DEL	DIAPH3	ENST00000400324	human	ensembl	74_37	-1	known	frame_shift_del	c.958	p.I320fs	0.329	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH3	HGNC	ENSG00000139734				148	0	0	68	29	29.8969
DACH1	0	genome.wustl.edu	37	13	72204774	72204775	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	72204774	72204775	-	T	INS	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	frame_shift_ins	c.1046_1045	p.I349fs	1.000:1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659				230	0	0	96	37	27.8195
TBC1D4	0	genome.wustl.edu	37	13	75898394	75898394	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	75898394	75898394	G	-	DEL	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	frame_shift_del	c.2177	p.P726fs	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				96	0	0	39	20	33.8983
LMO7	0	genome.wustl.edu	37	13	76432182	76432183	+	RNA	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	76432182	76432183	-	A	INS	LMO7	ENST00000605961	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.669:0.209	-	-	-	no_errors	LMO7	HGNC	ENSG00000136153				19	0	0	9	11	55
ABCC4	0	genome.wustl.edu	37	13	95696016	95696016	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	13	95696016	95696016	T	-	DEL	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	frame_shift_del	c.3655	p.I1219fs	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				83	0	0	46	21	31.3433
ENSG00000258851	0	genome.wustl.edu	37	14	104028197	104028197	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	104028197	104028197	A	-	DEL	ENSG00000258851	ENST00000556332	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-894P9.2	Clone_based_vega_gene	ENSG00000258851				38	0	0	19	6	24
PPP1R13B	0	genome.wustl.edu	37	14	104208418	104208418	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	104208418	104208418	G	-	DEL	PPP1R13B	ENST00000202556	human	ensembl	74_37	-1	known	frame_shift_del	c.1531	p.Q511fs	0.045	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808				165	0	0	156	11	6.58683
INF2	0	genome.wustl.edu	37	14	105174185	105174185	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	105174185	105174185	C	-	DEL	INF2	ENST00000392634	human	ensembl	74_37	+1	known	frame_shift_del	c.1581	p.V530fs	0.011	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_WH2_dom,superfamily_ARM-type_fold,smart_FH2_Formin,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485				23	0	0	18	13	41.9355
INF2	0	genome.wustl.edu	37	14	105174896	105174896	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	105174896	105174896	C	-	DEL	INF2	ENST00000392634	human	ensembl	74_37	+1	known	frame_shift_del	c.1859	p.R622fs	0.008	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_WH2_dom,superfamily_ARM-type_fold,smart_FH2_Formin,pfscan_WH2_dom	-	no_errors	INF2	HGNC	ENSG00000203485				63	0	0	35	20	36.3636
ENSG00000258908	0	genome.wustl.edu	37	14	20943125	20943125	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	20943125	20943125	T	-	DEL	ENSG00000258908	ENST00000554678	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-203M5.8	Clone_based_vega_gene	ENSG00000258908				89	0	0	34	19	35.8491
CDH24	0	genome.wustl.edu	37	14	23517514	23517514	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	23517514	23517514	G	-	DEL	CDH24	ENST00000267383	human	ensembl	74_37	-1	known	frame_shift_del	c.2135	p.P712fs	0.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880				107	0	0	63	43	40.566
BCL2L2	0	genome.wustl.edu	37	14	23778156	23778157	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	23778156	23778157	-	T	INS	BCL2L2	ENST00000250405	human	ensembl	74_37	+1	known	frame_shift_ins	c.564_565	p.A190fs	1.000:1.000	NULL	pfam_Blc2_fam,pfam_Bcl2_BH4,smart_Bcl2_BH4,pfscan_Bcl2-like,pfscan_Bcl2_BH4,prints_Apop_reg_BclW,prints_Blc2_fam	-	no_errors	BCL2L2	HGNC	ENSG00000129473				84	0	0	32	20	38.4615
ARHGAP5	0	genome.wustl.edu	37	14	32562545	32562545	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	32562545	32562545	T	-	DEL	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	frame_shift_del	c.2670	p.F892fs	0.999	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				90	0	0	32	15	31.9149
SNX6	0	genome.wustl.edu	37	14	35074876	35074876	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	35074876	35074876	T	-	DEL	SNX6	ENST00000362031	human	ensembl	74_37	-1	known	frame_shift_del	c.354	p.K118fs	1.000	pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	pfam_Phox,pfam_Vps5_C,pfam_BAR_dom,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX6	HGNC	ENSG00000129515				49	0	0	21	10	32.2581
CFL2	0	genome.wustl.edu	37	14	35182699	35182701	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	35182699	35182701	AGA	-	DEL	CFL2	ENST00000298159	human	ensembl	74_37	-1	known	in_frame_del	c.72_70	p.S24in_frame_del	1.000:1.000:1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	-	no_errors	CFL2	HGNC	ENSG00000165410				65	0	0	20	13	39.3939
MBIP	0	genome.wustl.edu	37	14	36770037	36770038	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	36770037	36770038	AA	-	DEL	MBIP	ENST00000604154	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.241:0.349	-	-	-	no_errors	MBIP	HGNC	ENSG00000151332				9	0	0	8	3	27.2727
DPPA3P2	0	genome.wustl.edu	37	14	36841115	36841115	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	36841115	36841115	T	-	DEL	DPPA3P2	ENST00000557188	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	DPPA3P2	HGNC	ENSG00000188831				167	0	0	81	10	10.989
CTAGE5	0	genome.wustl.edu	37	14	39819363	39819363	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	39819363	39819363	C	-	DEL	CTAGE5	ENST00000396158	human	ensembl	74_37	+1	known	frame_shift_del	c.2325	p.P777fs	0.940	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527				176	0	0	55	34	38.2022
FANCM	0	genome.wustl.edu	37	14	45636290	45636291	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	45636290	45636291	CA	-	DEL	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	frame_shift_del	c.1926_1927	p.H644fs	1.000:0.998	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				121	0	0	55	15	21.4286
MIS18BP1	0	genome.wustl.edu	37	14	45716019	45716019	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	45716019	45716019	T	-	DEL	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	frame_shift_del	c.471	p.K157fs	0.001	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				111	0	0	41	18	30.5085
SOS2	0	genome.wustl.edu	37	14	50626743	50626743	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	50626743	50626743	T	-	DEL	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	frame_shift_del	c.1258	p.M420fs	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				127	0	0	89	6	6.31579
CDKL1	0	genome.wustl.edu	37	14	50809704	50809704	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	50809704	50809704	C	-	DEL	CDKL1	ENST00000356146	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CDKL1	HGNC	ENSG00000100490				22	0	0	19	5	20.8333
NIN	0	genome.wustl.edu	37	14	51273538	51273539	+	Splice_Site	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	51273538	51273539	-	A	INS	NIN	ENST00000245441	human	ensembl	74_37	-1	known	splice_site_ins	c.184-3_184-2	e2-2	0.997:0.854	-	-	-	no_errors	NIN	HGNC	ENSG00000100503				31	0	0	17	7	29.1667
FERMT2	0	genome.wustl.edu	37	14	53360082	53360082	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	53360082	53360082	T	-	DEL	FERMT2	ENST00000343279	human	ensembl	74_37	-1	known	frame_shift_del	c.455	p.K152fs	1.000	pfam_FERM_N,smart_Band_41_domain	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712				112	0	0	45	25	35.7143
FBXO34	0	genome.wustl.edu	37	14	55819058	55819058	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	55819058	55819058	C	-	DEL	FBXO34	ENST00000313833	human	ensembl	74_37	+1	known	frame_shift_del	c.1950	p.K652fs	1.000	NULL	superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO34	HGNC	ENSG00000178974				110	0	0	58	19	24.6753
DHRS7	0	genome.wustl.edu	37	14	60622738	60622739	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	60622738	60622739	-	T	INS	DHRS7	ENST00000216500	human	ensembl	74_37	-1	known	frame_shift_ins	c.266_265	p.R89fs	1.000:0.993	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7	HGNC	ENSG00000100612				128	0	0	66	34	34
C14orf39	0	genome.wustl.edu	37	14	60923644	60923644	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	60923644	60923644	G	-	DEL	C14orf39	ENST00000321731	human	ensembl	74_37	-1	known	frame_shift_del	c.1349	p.P450fs	0.000	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008				235	0	0	129	38	22.7545
SNAPC1	0	genome.wustl.edu	37	14	62242910	62242911	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	62242910	62242911	-	T	INS	SNAPC1	ENST00000216294	human	ensembl	74_37	+1	known	frame_shift_ins	c.632_633	p.D214fs	1.000:0.961	NULL	pfam_SNAPc_SNAP43	-	no_errors	SNAPC1	HGNC	ENSG00000023608				65	0	0	28	11	28.2051
ENSG00000258891	0	genome.wustl.edu	37	14	74363249	74363249	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	74363249	74363249	T	-	DEL	ENSG00000258891	ENST00000554009	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP5-1021I20.5	Clone_based_vega_gene	ENSG00000258891				71	0	0	42	9	17.6471
VSX2	0	genome.wustl.edu	37	14	74726415	74726415	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	74726415	74726415	C	-	DEL	VSX2	ENST00000261980	human	ensembl	74_37	+1	known	frame_shift_del	c.690	p.L232fs	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	VSX2	HGNC	ENSG00000119614				110	0	0	63	32	33.6842
VRTN	0	genome.wustl.edu	37	14	74824462	74824463	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	74824462	74824463	-	G	INS	VRTN	ENST00000256362	human	ensembl	74_37	+1	known	frame_shift_ins	c.976_977	p.V329fs	0.998:0.994	NULL	pfam_Transposase_8	-	no_errors	VRTN	HGNC	ENSG00000133980				130	0	0	83	41	33.0645
MLH3	0	genome.wustl.edu	37	14	75515058	75515058	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	75515058	75515058	T	-	DEL	MLH3	ENST00000355774	human	ensembl	74_37	-1	known	frame_shift_del	c.1301	p.N434fs	0.002	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_dom,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684				124	1	0.8	52	23	30.6667
ANGEL1	0	genome.wustl.edu	37	14	77275933	77275933	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	77275933	77275933	G	-	DEL	ANGEL1	ENST00000251089	human	ensembl	74_37	-1	known	frame_shift_del	c.118	p.Q40fs	1.000	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL1	HGNC	ENSG00000013523				101	0	0	44	26	37.1429
ZC3H14	0	genome.wustl.edu	37	14	89044473	89044473	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	89044473	89044473	A	-	DEL	ZC3H14	ENST00000251038	human	ensembl	74_37	+1	known	frame_shift_del	c.1268	p.N425fs	0.998	NULL	smart_Znf_CCCH	-	no_errors	ZC3H14	HGNC	ENSG00000100722				90	0	0	42	14	25
NRDE2	0	genome.wustl.edu	37	14	90755464	90755464	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	90755464	90755464	T	-	DEL	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	frame_shift_del	c.2255	p.N752fs	1.000	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720				194	0	0	157	15	8.72093
ATG2B	0	genome.wustl.edu	37	14	96788614	96788615	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	14	96788614	96788615	AA	-	DEL	ATG2B	ENST00000488421	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ATG2B	HGNC	ENSG00000066739				68	0	0	18	23	56.0976
DNM1P46	0	genome.wustl.edu	37	15	100330968	100330969	+	RNA	DEL	AC	AC	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	100330968	100330969	AC	-	DEL	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008:0.009	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				9	0	0	4	2	33.3333
LINS	0	genome.wustl.edu	37	15	101114004	101114004	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	101114004	101114004	T	-	DEL	LINS	ENST00000314742	human	ensembl	74_37	-1	known	frame_shift_del	c.1074	p.K358fs	0.001	NULL	NULL	-	no_errors	LINS	HGNC	ENSG00000140471				177	0	0	54	49	47.5728
HERC2P2	0	genome.wustl.edu	37	15	23285312	23285313	+	RNA	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	23285312	23285313	-	G	INS	HERC2P2	ENST00000558398	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	HERC2P2	HGNC	ENSG00000140181				84	0	0	71	5	6.57895
ATP10A	0	genome.wustl.edu	37	15	25953420	25953420	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	25953420	25953420	T	-	DEL	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	frame_shift_del	c.2372	p.K791fs	1.000	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				121	0	0	62	39	38.6139
SRP14	0	genome.wustl.edu	37	15	40328596	40328597	+	In_Frame_Ins	INS	-	-	TGC			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	40328596	40328597	-	TGC	INS	SRP14	ENST00000267884	human	ensembl	74_37	-1	known	in_frame_ins	c.349_348	p.116in_frame_insA	0.057:0.058	prints_Antifreeze_1	pfam_Signal_recog_particle_SRP14,superfamily_Signal_recog_particle_SRP9/14,prints_Antifreeze_1	-	no_errors	SRP14	HGNC	ENSG00000140319				86	0	0	70	9	11.3924
C15orf52	0	genome.wustl.edu	37	15	40631782	40631782	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	40631782	40631782	C	-	DEL	C15orf52	ENST00000559313	human	ensembl	74_37	-1	known	frame_shift_del	c.294	p.M99fs	0.991	NULL	NULL	-	no_errors	C15orf52	HGNC	ENSG00000188549				129	0	0	61	33	35.1064
DISP2	0	genome.wustl.edu	37	15	40660921	40660921	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	40660921	40660921	T	-	DEL	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	frame_shift_del	c.2608	p.F871fs	0.994	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				46	0	0	44	21	32.3077
GANC	0	genome.wustl.edu	37	15	42600423	42600425	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	42600423	42600425	CTT	-	DEL	GANC	ENST00000318010	human	ensembl	74_37	+1	known	in_frame_del	c.629_631	p.S212in_frame_del	1.000:0.232:0.035	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GANC	HGNC	ENSG00000214013				169	0	0	89	62	41.0596
ZNF106	0	genome.wustl.edu	37	15	42742957	42742957	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	42742957	42742957	A	-	DEL	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	frame_shift_del	c.1444	p.S482fs	0.139	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				251	1	0.396825	146	16	9.87654
PPIP5K1	0	genome.wustl.edu	37	15	43827486	43827486	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	43827486	43827486	C	-	DEL	PPIP5K1	ENST00000420765	human	ensembl	74_37	-1	known	frame_shift_del	c.3688	p.E1230fs	0.000	NULL	pfam_His_Pase_superF_clade-2,superfamily_Cys_alpha_HP_mot_SF	-	no_errors	PPIP5K1	HGNC	ENSG00000168781				174	0	0	82	53	39.2593
HYPK	0	genome.wustl.edu	37	15	44094053	44094053	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	44094053	44094053	T	-	DEL	HYPK	ENST00000497142	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	HYPK	HGNC	ENSG00000242028				41	0	0	22	8	26.6667
EIF3J	0	genome.wustl.edu	37	15	44843099	44843099	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	44843099	44843099	A	-	DEL	EIF3J	ENST00000261868	human	ensembl	74_37	+1	known	frame_shift_del	c.173	p.E61fs	1.000	pfam_eIF3j	pfam_eIF3j	-	no_errors	EIF3J	HGNC	ENSG00000104131				105	0	0	79	26	24.7619
B2M	0	genome.wustl.edu	37	15	45007833	45007834	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	45007833	45007834	-	A	INS	B2M	ENST00000544417	human	ensembl	74_37	+1	known	frame_shift_ins	c.280_281	p.D96fs	0.000:0.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	B2M	HGNC	ENSG00000166710				142	0	0	51	38	42.6966
USP8	0	genome.wustl.edu	37	15	50763891	50763892	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	50763891	50763892	-	G	INS	USP8	ENST00000307179	human	ensembl	74_37	+1	known	frame_shift_ins	c.748_749	p.N252fs	1.000:1.000	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Peptidase_C19/C67,pfam_USP8_dimer,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_dom,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP8	HGNC	ENSG00000138592				147	0	0	51	35	40.6977
PIGB	0	genome.wustl.edu	37	15	55621922	55621922	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	55621922	55621922	T	-	DEL	PIGB	ENST00000164305	human	ensembl	74_37	+1	known	frame_shift_del	c.523	p.C177fs	1.000	pfam_GPI_mannosylTrfase	pfam_GPI_mannosylTrfase	-	no_errors	PIGB	HGNC	ENSG00000069943				146	0	0	60	35	36.8421
PRTG	0	genome.wustl.edu	37	15	55912360	55912361	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	55912360	55912361	-	A	INS	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	frame_shift_ins	c.3303_3302	p.S1102fs	1.000:1.000	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450				145	0	0	78	21	21.2121
ENSG00000259941	0	genome.wustl.edu	37	15	56686825	56686825	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	56686825	56686825	T	-	DEL	ENSG00000259941	ENST00000564401	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	RP11-48G14.2	Clone_based_vega_gene	ENSG00000259941				18	0	0	9	7	43.75
TLN2	0	genome.wustl.edu	37	15	63076122	63076123	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	63076122	63076123	CA	-	DEL	TLN2	ENST00000472902	human	ensembl	74_37	+1	putative	frame_shift_del	c.948_949	p.L320fs	0.004:0.000	NULL	pfam_Vinculin-bd_dom,superfamily_Vinculin/catenin	-	no_errors	TLN2	HGNC	ENSG00000171914				80	0	0	59	15	20.2703
FBXL22	0	genome.wustl.edu	37	15	63889658	63889658	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	63889658	63889658	T	-	DEL	FBXL22	ENST00000360587	human	ensembl	74_37	+1	known	frame_shift_del	c.67	p.F23fs	1.000	superfamily_F-box_dom	superfamily_F-box_dom	-	no_errors	FBXL22	HGNC	ENSG00000197361				85	0	0	65	9	12.1622
CSNK1G1	0	genome.wustl.edu	37	15	64506164	64506165	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	64506164	64506165	-	T	INS	CSNK1G1	ENST00000303052	human	ensembl	74_37	-1	known	frame_shift_ins	c.604_603	p.H201fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Casein_kinase-1_gamma_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1G1	HGNC	ENSG00000169118				176	0	0	84	32	27.5862
TRIP4	0	genome.wustl.edu	37	15	64686218	64686218	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	64686218	64686218	A	-	DEL	TRIP4	ENST00000261884	human	ensembl	74_37	+1	known	frame_shift_del	c.175	p.G61fs	0.978	NULL	pfam_ASCH_domain,pfam_Znf_C2HC5,superfamily_PUA-like_domain	-	no_errors	TRIP4	HGNC	ENSG00000103671				59	0	0	18	16	47.0588
SLC24A1	0	genome.wustl.edu	37	15	65917248	65917248	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	65917248	65917248	A	-	DEL	SLC24A1	ENST00000261892	human	ensembl	74_37	+1	known	frame_shift_del	c.830	p.N279fs	0.001	tigrfam_K-dep_Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A1	HGNC	ENSG00000074621				176	0	0	86	61	41.4966
IQCH	0	genome.wustl.edu	37	15	67681234	67681234	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	67681234	67681234	A	-	DEL	IQCH	ENST00000335894	human	ensembl	74_37	+1	known	frame_shift_del	c.1522	p.I510fs	0.579	NULL	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCH	HGNC	ENSG00000103599				128	1	0.775194	55	25	31.25
UACA	0	genome.wustl.edu	37	15	70961076	70961076	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	70961076	70961076	T	-	DEL	UACA	ENST00000322954	human	ensembl	74_37	-1	known	frame_shift_del	c.1947	p.K649fs	0.012	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831				64	0	0	32	17	34.6939
PML	0	genome.wustl.edu	37	15	74328248	74328248	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	74328248	74328248	C	-	DEL	PML	ENST00000268059	human	ensembl	74_37	+1	known	frame_shift_del	c.2446	p.I818fs	0.009	NULL	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				350	0	0	198	103	34.2193
STRA6	0	genome.wustl.edu	37	15	74494643	74494643	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	74494643	74494643	A	-	DEL	STRA6	ENST00000573456	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	STRA6	HGNC	ENSG00000137868				28	0	0	17	5	22.7273
MESDC2	0	genome.wustl.edu	37	15	81271633	81271633	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	81271633	81271633	T	-	DEL	MESDC2	ENST00000261758	human	ensembl	74_37	-1	known	frame_shift_del	c.632	p.K211fs	1.000	pfam_Mesoderm_development_cand-2	pfam_Mesoderm_development_cand-2	-	no_errors	MESDC2	HGNC	ENSG00000117899				71	0	0	54	28	34.1463
AKAP13	0	genome.wustl.edu	37	15	86122437	86122437	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	86122437	86122437	G	-	DEL	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	frame_shift_del	c.1138	p.E381fs	0.005	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				107	0	0	55	36	39.5604
AKAP13	0	genome.wustl.edu	37	15	86287017	86287017	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	86287017	86287017	A	-	DEL	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	frame_shift_del	c.8365	p.K2791fs	0.995	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				98	0	0	62	32	34.0426
TICRR	0	genome.wustl.edu	37	15	90146028	90146028	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	90146028	90146028	A	-	DEL	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	frame_shift_del	c.2569	p.N858fs	1.000	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534				18	0	0	9	7	43.75
SLCO3A1	0	genome.wustl.edu	37	15	92706482	92706483	+	RNA	DEL	CA	CA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	92706482	92706483	CA	-	DEL	SLCO3A1	ENST00000555549	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.144:0.004	-	-	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				17	0	0	17	9	34.6154
CHD2	0	genome.wustl.edu	37	15	93480819	93480819	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	15	93480819	93480819	A	-	DEL	CHD2	ENST00000420239	human	ensembl	74_37	+1	known	frame_shift_del	c.515	p.V175fs	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575				44	0	0	50	20	28.5714
CACNA1H	0	genome.wustl.edu	37	16	1270496	1270496	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	1270496	1270496	C	-	DEL	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	frame_shift_del	c.6564	p.C2191fs	0.999	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				80	0	0	55	32	36.7816
MYH11	0	genome.wustl.edu	37	16	15797783	15797783	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	15797783	15797783	T	-	DEL	MYH11	ENST00000573908	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MYH11	HGNC	ENSG00000133392				98	0	0	37	24	39.3443
CRAMP1L	0	genome.wustl.edu	37	16	1709953	1709953	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	1709953	1709953	C	-	DEL	CRAMP1L	ENST00000293925	human	ensembl	74_37	+1	known	frame_shift_del	c.2302	p.P769fs	0.999	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	CRAMP1L	HGNC	ENSG00000007545				52	0	0	49	6	10.9091
MAPK8IP3	0	genome.wustl.edu	37	16	1793366	1793366	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	1793366	1793366	C	-	DEL	MAPK8IP3	ENST00000250894	human	ensembl	74_37	+1	known	frame_shift_del	c.633	p.L213fs	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834				106	0	0	45	15	25
TMC5	0	genome.wustl.edu	37	16	19452014	19452015	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	19452014	19452015	-	T	INS	TMC5	ENST00000396229	human	ensembl	74_37	+1	known	frame_shift_ins	c.654_655	p.G220fs	0.000:0.000	NULL	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534				108	0	0	59	11	15.7143
CASKIN1	0	genome.wustl.edu	37	16	2229782	2229782	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	2229782	2229782	G	-	DEL	CASKIN1	ENST00000343516	human	ensembl	74_37	-1	known	frame_shift_del	c.3587	p.P1196fs	0.964	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971				14	0	0	10	8	44.4444
GTF3C1	0	genome.wustl.edu	37	16	27475972	27475972	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	27475972	27475972	G	-	DEL	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	frame_shift_del	c.5541	p.E1848fs	0.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				124	0	0	57	25	30.4878
ATXN2L	0	genome.wustl.edu	37	16	28838262	28838262	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	28838262	28838262	G	-	DEL	ATXN2L	ENST00000395547	human	ensembl	74_37	+1	known	frame_shift_del	c.696	p.G234fs	0.677	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2L	HGNC	ENSG00000168488				75	0	0	35	10	22.2222
SH2B1	0	genome.wustl.edu	37	16	28883208	28883208	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	28883208	28883208	C	-	DEL	SH2B1	ENST00000322610	human	ensembl	74_37	+1	known	frame_shift_del	c.1417	p.R475fs	1.000	NULL	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B1	HGNC	ENSG00000178188				140	0	0	91	28	23.5294
PRRT2	0	genome.wustl.edu	37	16	29825015	29825016	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	29825015	29825016	-	C	INS	PRRT2	ENST00000567659	human	ensembl	74_37	+1	known	frame_shift_ins	c.640_641	p.R217fs	1.000:1.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	PRRT2	HGNC	ENSG00000167371				27	0	0	12	5	29.4118
ITFG3	0	genome.wustl.edu	37	16	304591	304591	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	304591	304591	T	-	DEL	ITFG3	ENST00000301678	human	ensembl	74_37	+1	known	frame_shift_del	c.179	p.F61fs	0.991	superfamily_Quinonprotein_ADH-like_supfam	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	ITFG3	HGNC	ENSG00000167930				332	0	0	205	102	33.2248
CLDN9	0	genome.wustl.edu	37	16	3063895	3063895	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3063895	3063895	G	-	DEL	CLDN9	ENST00000445369	human	ensembl	74_37	+1	known	frame_shift_del	c.532	p.L180fs	0.976	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin9	-	no_errors	CLDN9	HGNC	ENSG00000213937				67	0	0	50	35	41.1765
PHKG2	0	genome.wustl.edu	37	16	30768017	30768017	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	30768017	30768017	C	-	DEL	PHKG2	ENST00000563588	human	ensembl	74_37	+1	known	frame_shift_del	c.908	p.R305fs	0.756	superfamily_Kinase-like_dom,prints_Phosph_kin_gamma	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Phosph_kin_gamma,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PHKG2	HGNC	ENSG00000156873				151	0	0	77	22	22.2222
TIGD7	0	genome.wustl.edu	37	16	3350471	3350472	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3350471	3350472	-	T	INS	TIGD7	ENST00000268674	human	ensembl	74_37	-1	known	frame_shift_ins	c.144_143	p.N48fs	0.995:0.999	pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD7	HGNC	ENSG00000140993				113	1	0.877193	77	16	17.2043
C16orf90	0	genome.wustl.edu	37	16	3543946	3543946	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	3543946	3543946	G	-	DEL	C16orf90	ENST00000437192	human	ensembl	74_37	-1	known	frame_shift_del	c.442	p.Q148fs	1.000	NULL	NULL	-	no_errors	C16orf90	HGNC	ENSG00000215131				27	0	0	8	7	46.6667
AXIN1	0	genome.wustl.edu	37	16	396787	396787	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	396787	396787	G	-	DEL	AXIN1	ENST00000262320	human	ensembl	74_37	-1	known	frame_shift_del	c.239	p.P80fs	1.000	superfamily_Regulat_G_prot_signal_superfam	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN1	HGNC	ENSG00000103126				58	0	0	31	4	11.4286
VASN	0	genome.wustl.edu	37	16	4432529	4432529	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	4432529	4432529	G	-	DEL	VASN	ENST00000304735	human	ensembl	74_37	+1	known	frame_shift_del	c.1651	p.E552fs	1.000	pfscan_Fibronectin_type3	pfam_Leu-rich_rpt,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	VASN	HGNC	ENSG00000168140				19	0	0	16	10	38.4615
VPS35	0	genome.wustl.edu	37	16	46695735	46695735	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	46695735	46695735	T	-	DEL	VPS35	ENST00000299138	human	ensembl	74_37	-1	known	frame_shift_del	c.2106	p.A703fs	0.998	pfam_VPS35,superfamily_ARM-type_fold	pfam_VPS35,superfamily_ARM-type_fold	-	no_errors	VPS35	HGNC	ENSG00000069329				142	0	0	63	20	24.0964
ANKS3	0	genome.wustl.edu	37	16	4747357	4747358	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	4747357	4747358	-	G	INS	ANKS3	ENST00000304283	human	ensembl	74_37	-1	known	frame_shift_ins	c.1871_1870	p.L624fs	0.966:0.735	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS3	HGNC	ENSG00000168096				108	0	0	64	33	34.0206
NOD2	0	genome.wustl.edu	37	16	50745331	50745331	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	50745331	50745331	G	-	DEL	NOD2	ENST00000300589	human	ensembl	74_37	+1	known	frame_shift_del	c.1509	p.S506fs	0.001	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207				175	0	0	112	29	20.5674
TOX3	0	genome.wustl.edu	37	16	52478236	52478236	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	52478236	52478236	T	-	DEL	TOX3	ENST00000219746	human	ensembl	74_37	-1	known	frame_shift_del	c.939	p.E314fs	0.928	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX3	HGNC	ENSG00000103460				16	0	0	16	7	30.4348
RPGRIP1L	0	genome.wustl.edu	37	16	53691536	53691536	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	53691536	53691536	T	-	DEL	RPGRIP1L	ENST00000379925	human	ensembl	74_37	-1	known	frame_shift_del	c.1410	p.E471fs	0.963	NULL	pfam_DUF3250,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494				21	0	0	8	6	42.8571
RSPRY1	0	genome.wustl.edu	37	16	57272952	57272952	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	57272952	57272952	A	-	DEL	RSPRY1	ENST00000563073	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.140	-	-	-	no_errors	RSPRY1	HGNC	ENSG00000159579				21	0	0	12	7	36.8421
SLC38A7	0	genome.wustl.edu	37	16	58705111	58705111	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	58705111	58705111	C	-	DEL	SLC38A7	ENST00000219320	human	ensembl	74_37	-1	known	frame_shift_del	c.1069	p.V357fs	0.001	pfam_AA_transpt_TM	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A7	HGNC	ENSG00000103042				64	0	0	54	16	22.8571
CTCF	0	genome.wustl.edu	37	16	67645339	67645339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	67645339	67645339	A	-	DEL	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.T204fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				93	0	0	57	34	37.3626
ZFP90	0	genome.wustl.edu	37	16	68597471	68597471	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	68597471	68597471	A	-	DEL	ZFP90	ENST00000398253	human	ensembl	74_37	+1	known	frame_shift_del	c.781	p.T262fs	0.942	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP90	HGNC	ENSG00000184939				174	0	0	146	13	8.1761
MTSS1L	0	genome.wustl.edu	37	16	70698147	70698147	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	70698147	70698147	G	-	DEL	MTSS1L	ENST00000338779	human	ensembl	74_37	-1	known	frame_shift_del	c.1677	p.G560fs	0.001	NULL	pfam_IRSp53/MIM_homology_IMD	-	no_errors	MTSS1L	HGNC	ENSG00000132613				12	0	0	31	10	24.3902
HYDIN	0	genome.wustl.edu	37	16	71007853	71007854	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	71007853	71007854	-	GA	INS	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	frame_shift_ins	c.5108_5107	p.R1703fs	0.000:0.000	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				159	0	0	137	9	6.16438
MARVELD3	0	genome.wustl.edu	37	16	71668442	71668442	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	71668442	71668442	G	-	DEL	MARVELD3	ENST00000268485	human	ensembl	74_37	+1	known	frame_shift_del	c.942	p.Y317fs	0.000	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832				63	0	0	73	9	10.9756
WDR90	0	genome.wustl.edu	37	16	716929	716929	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	716929	716929	T	-	DEL	WDR90	ENST00000315764	human	ensembl	74_37	+1	known	frame_shift_del	c.682	p.F229fs	0.010	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				32	0	0	25	10	28.5714
ZFHX3	0	genome.wustl.edu	37	16	72821960	72821960	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	72821960	72821960	G	-	DEL	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	frame_shift_del	c.10215	p.A3407fs	0.977	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				66	0	0	37	18	32.7273
PLCG2	0	genome.wustl.edu	37	16	81942124	81942125	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	81942124	81942125	-	G	INS	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	frame_shift_ins	c.1661_1662	p.K557fs	0.856:0.303	pfam_SH2,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_SH2,pirsf_PLC-gamma,pfscan_SH2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				49	0	0	34	17	33.3333
MLYCD	0	genome.wustl.edu	37	16	83941844	83941844	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	83941844	83941844	T	-	DEL	MLYCD	ENST00000262430	human	ensembl	74_37	+1	known	frame_shift_del	c.755	p.L253fs	0.772	pfam_Malonyl_CoA_deC	pfam_Malonyl_CoA_deC	-	no_errors	MLYCD	HGNC	ENSG00000103150				92	0	0	77	21	21.4286
ZDHHC7	0	genome.wustl.edu	37	16	85010045	85010045	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	85010045	85010045	C	-	DEL	ZDHHC7	ENST00000344861	human	ensembl	74_37	-1	known	frame_shift_del	c.942	p.S317fs	0.001	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC7	HGNC	ENSG00000153786				101	0	0	92	8	8
GSE1	0	genome.wustl.edu	37	16	85682289	85682290	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	85682289	85682290	-	CC	INS	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	frame_shift_ins	c.358_359	p.V123fs	1.000:0.999	pfam_GSE-like	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149				115	0	0	102	79	43.6464
ZCCHC14	0	genome.wustl.edu	37	16	87453429	87453429	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	87453429	87453429	A	-	DEL	ZCCHC14	ENST00000268616	human	ensembl	74_37	-1	known	frame_shift_del	c.594	p.L199fs	1.000	superfamily_Phox	pfam_SAM_type1,pfam_Znf_CCHC,superfamily_Phox,superfamily_SAM/pointed,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC14	HGNC	ENSG00000140948				68	0	0	58	10	14.7059
ZC3H18	0	genome.wustl.edu	37	16	88691141	88691141	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	88691141	88691141	C	-	DEL	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	frame_shift_del	c.2030	p.R680fs	0.568	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				32	0	0	22	19	46.3415
TUBB8P7	0	genome.wustl.edu	37	16	90160865	90160865	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	16	90160865	90160865	C	-	DEL	TUBB8P7	ENST00000564451	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.161	-	-	-	no_errors	TUBB8P7	HGNC	ENSG00000261812				33	0	0	48	12	20
ENSG00000205325	0	genome.wustl.edu	37	17	14673543	14673543	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	14673543	14673543	T	-	DEL	ENSG00000205325	ENST00000379640	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	AC005863.1	Clone_based_vega_gene	ENSG00000205325				60	0	0	24	8	25
SCARF1	0	genome.wustl.edu	37	17	1538678	1538678	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	1538678	1538678	C	-	DEL	SCARF1	ENST00000263071	human	ensembl	74_37	-1	known	frame_shift_del	c.1867	p.A623fs	0.179	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF1	HGNC	ENSG00000074660				73	0	0	36	30	45.4545
NCOR1	0	genome.wustl.edu	37	17	16029445	16029446	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	16029445	16029446	-	T	INS	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	frame_shift_ins	c.1585_1584	p.E528fs	1.000:1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				26	0	0	9	4	30.7692
TNFRSF13B	0	genome.wustl.edu	37	17	16843700	16843700	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	16843700	16843700	C	-	DEL	TNFRSF13B	ENST00000261652	human	ensembl	74_37	-1	known	frame_shift_del	c.571	p.D191fs	0.043	NULL	pfam_TACI_Cys-rich-dom,prints_TNFR_13B	-	no_errors	TNFRSF13B	HGNC	ENSG00000240505				93	0	0	72	29	28.7129
FLCN	0	genome.wustl.edu	37	17	17119709	17119709	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	17119709	17119709	G	-	DEL	FLCN	ENST00000285071	human	ensembl	74_37	-1	known	frame_shift_del	c.1285	p.H429fs	1.000	NULL	pfam_Folliculin	-	no_errors	FLCN	HGNC	ENSG00000154803				29	0	0	33	11	25
ENSG00000262920	0	genome.wustl.edu	37	17	171283	171283	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	171283	171283	C	-	DEL	ENSG00000262920	ENST00000570501	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-1260E13.1	Clone_based_vega_gene	ENSG00000262920				13	0	0	18	6	25
NT5M	0	genome.wustl.edu	37	17	17250189	17250190	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	17250189	17250190	-	C	INS	NT5M	ENST00000389022	human	ensembl	74_37	+1	known	frame_shift_ins	c.615_616	p.R207fs	0.998:1.000	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	-	no_errors	NT5M	HGNC	ENSG00000205309				67	0	0	48	9	15.7895
SMG6	0	genome.wustl.edu	37	17	1964760	1964760	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	1964760	1964760	G	-	DEL	SMG6	ENST00000570756	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	SMG6	HGNC	ENSG00000070366				12	0	0	2	8	80
FOXN1	0	genome.wustl.edu	37	17	26851000	26851000	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	26851000	26851000	C	-	DEL	FOXN1	ENST00000226247	human	ensembl	74_37	+1	known	frame_shift_del	c.13	p.P6fs	0.459	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN1	HGNC	ENSG00000109101				49	0	0	23	5	17.8571
CPD	0	genome.wustl.edu	37	17	28772928	28772930	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	28772928	28772930	CTC	-	DEL	CPD	ENST00000225719	human	ensembl	74_37	+1	known	in_frame_del	c.2763_2765	p.S924in_frame_del	0.809:0.976:0.981	NULL	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582				103	0	0	39	24	38.0952
ENSG00000266535	0	genome.wustl.edu	37	17	31439098	31439101	+	RNA	DEL	AGAG	AGAG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AGAG	AGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	31439098	31439101	AGAG	-	DEL	ENSG00000266535	ENST00000584688	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.563:0.970:0.975:0.999	-	-	-	no_errors	RP11-40A13.1	Clone_based_vega_gene	ENSG00000266535				28	0	0	16	6	27.2727
LIG3	0	genome.wustl.edu	37	17	33310486	33310486	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	33310486	33310486	A	-	DEL	LIG3	ENST00000378526	human	ensembl	74_37	+1	known	frame_shift_del	c.462	p.I157fs	1.000	pfam_Znf_PARP,pfscan_Znf_PARP	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_Znf_PARP,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_PARP,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG3	HGNC	ENSG00000005156				49	0	0	37	16	30.1887
SLFN12	0	genome.wustl.edu	37	17	33749492	33749493	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	33749492	33749493	-	A	INS	SLFN12	ENST00000304905	human	ensembl	74_37	-1	known	frame_shift_ins	c.556_555	p.D185fs	0.030:0.080	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12	HGNC	ENSG00000172123				100	1	0.990099	40	22	35.4839
ITGAE	0	genome.wustl.edu	37	17	3655036	3655036	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	3655036	3655036	G	-	DEL	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	frame_shift_del	c.1801	p.L601fs	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAE	HGNC	ENSG00000083457				101	0	0	77	16	17.2043
SRCIN1	0	genome.wustl.edu	37	17	36707421	36707421	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	36707421	36707421	G	-	DEL	SRCIN1	ENST00000264659	human	ensembl	74_37	-1	known	frame_shift_del	c.2932	p.R978fs	1.000	NULL	pfam_AIP3_C	-	no_errors	SRCIN1	HGNC	ENSG00000017373				30	0	0	19	12	38.7097
MED24	0	genome.wustl.edu	37	17	38182445	38182446	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	38182445	38182446	AG	-	DEL	MED24	ENST00000394128	human	ensembl	74_37	-1	known	frame_shift_del	c.1949_1948	p.L650fs	0.996:0.901	pfam_Mediator_Med24_N	pfam_Mediator_Med24_N	-	no_errors	MED24	HGNC	ENSG00000008838				140	0	0	64	38	37.2549
THRA	0	genome.wustl.edu	37	17	38243082	38243083	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	38243082	38243083	-	A	INS	THRA	ENST00000264637	human	ensembl	74_37	+1	known	frame_shift_ins	c.699_700	p.L235fs	1.000:1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351				106	0	0	95	8	7.76699
KRT23	0	genome.wustl.edu	37	17	39092691	39092692	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	39092691	39092692	-	G	INS	KRT23	ENST00000209718	human	ensembl	74_37	-1	known	frame_shift_ins	c.165_164	p.G56fs	0.000:0.000	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT23	HGNC	ENSG00000108244				146	0	0	59	43	42.1569
FKBP10	0	genome.wustl.edu	37	17	39975558	39975559	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	39975558	39975559	-	C	INS	FKBP10	ENST00000321562	human	ensembl	74_37	+1	known	frame_shift_ins	c.824_825	p.G278fs	0.298:0.062	NULL	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP10	HGNC	ENSG00000141756				124	0	0	90	42	31.8182
KCNH4	0	genome.wustl.edu	37	17	40312113	40312113	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	40312113	40312113	G	-	DEL	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	frame_shift_del	c.2999	p.P1000fs	0.000	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558				49	0	0	42	29	40.8451
STAT5B	0	genome.wustl.edu	37	17	40370235	40370236	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	40370235	40370236	-	G	INS	STAT5B	ENST00000293328	human	ensembl	74_37	-1	known	frame_shift_ins	c.1103_1102	p.Q368fs	1.000:1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757				75	0	0	58	38	39.5833
STAT5A	0	genome.wustl.edu	37	17	40453399	40453399	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	40453399	40453399	C	-	DEL	STAT5A	ENST00000345506	human	ensembl	74_37	+1	known	frame_shift_del	c.1096	p.Q368fs	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5A	HGNC	ENSG00000126561				128	0	0	129	34	20.8589
PLEKHH3	0	genome.wustl.edu	37	17	40825491	40825491	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	40825491	40825491	C	-	DEL	PLEKHH3	ENST00000591022	human	ensembl	74_37	-1	known	frame_shift_del	c.574	p.V192fs	0.002	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_MyTH4_dom,pfam_FERM_central,pfam_Ras-assoc,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH3	HGNC	ENSG00000068137				82	0	0	35	27	43.5484
WNK4	0	genome.wustl.edu	37	17	40939870	40939870	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	40939870	40939870	G	-	DEL	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	frame_shift_del	c.1816	p.V608fs	0.004	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				93	0	0	83	7	7.77778
MAP3K14-AS1	0	genome.wustl.edu	37	17	43339305	43339305	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	43339305	43339305	C	-	DEL	MAP3K14-AS1	ENST00000585780	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	MAP3K14-AS1	HGNC	ENSG00000267278				19	0	0	8	9	52.9412
EFCAB13	0	genome.wustl.edu	37	17	45471395	45471395	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	45471395	45471395	A	-	DEL	EFCAB13	ENST00000331493	human	ensembl	74_37	+1	known	frame_shift_del	c.1731	p.V580fs	0.000	NULL	NULL	-	no_errors	EFCAB13	HGNC	ENSG00000178852				75	0	0	27	26	49.0566
NFE2L1	0	genome.wustl.edu	37	17	46128959	46128959	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	46128959	46128959	C	-	DEL	NFE2L1	ENST00000362042	human	ensembl	74_37	+1	known	frame_shift_del	c.479	p.P162fs	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641				115	0	0	71	34	32.381
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				119	0	0	56	52	48.1481
ANKRD40	0	genome.wustl.edu	37	17	48777221	48777223	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	48777221	48777223	TCA	-	DEL	ANKRD40	ENST00000285243	human	ensembl	74_37	-1	known	in_frame_del	c.317_315	p.D106in_frame_del	0.003:0.003:0.001	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945				42	0	0	29	12	29.2683
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				185	1	0.537634	66	125	65.445
PPM1D	0	genome.wustl.edu	37	17	58740439	58740439	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	58740439	58740439	T	-	DEL	PPM1D	ENST00000305921	human	ensembl	74_37	+1	known	frame_shift_del	c.1344	p.L450fs	0.970	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1D	HGNC	ENSG00000170836				110	0	0	52	32	38.0952
MED13	0	genome.wustl.edu	37	17	60111269	60111269	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	60111269	60111269	T	-	DEL	MED13	ENST00000397786	human	ensembl	74_37	-1	known	frame_shift_del	c.693	p.K231fs	1.000	pfam_Mediator_Med13_N_met/fun	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				91	0	0	40	15	27.2727
METTL2A	0	genome.wustl.edu	37	17	60522297	60522298	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	60522297	60522298	-	A	INS	METTL2A	ENST00000311506	human	ensembl	74_37	+1	known	frame_shift_ins	c.909_910	p.G305fs	1.000:1.000	pirsf_MeTrfase	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase	-	no_errors	METTL2A	HGNC	ENSG00000087995				47	0	0	31	17	35.4167
ACE	0	genome.wustl.edu	37	17	61571754	61571754	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	61571754	61571754	C	-	DEL	ACE	ENST00000290866	human	ensembl	74_37	+1	known	frame_shift_del	c.3303	p.P1103fs	0.895	pfam_Peptidase_M2,prints_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640				71	0	0	21	16	43.2432
DDX42	0	genome.wustl.edu	37	17	61886281	61886281	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	61886281	61886281	G	-	DEL	DDX42	ENST00000389924	human	ensembl	74_37	+1	known	frame_shift_del	c.1125	p.A377fs	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX42	HGNC	ENSG00000198231				133	0	0	44	27	38.0282
AXIN2	0	genome.wustl.edu	37	17	63533939	63533940	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	63533939	63533940	CT	-	DEL	AXIN2	ENST00000307078	human	ensembl	74_37	-1	known	frame_shift_del	c.1215_1214	p.E405fs	1.000:1.000	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN2	HGNC	ENSG00000168646				9	0	0	13	8	38.0952
ABCA6	0	genome.wustl.edu	37	17	67125767	67125767	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	67125767	67125767	A	-	DEL	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	frame_shift_del	c.917	p.L306fs	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				139	1	0.714286	31	36	53.7313
ABCA10	0	genome.wustl.edu	37	17	67190626	67190626	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	67190626	67190626	A	-	DEL	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	frame_shift_del	c.1245	p.F415fs	0.954	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				75	0	0	35	17	32.6923
SLC16A11	0	genome.wustl.edu	37	17	6945482	6945482	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	6945482	6945482	C	-	DEL	SLC16A11	ENST00000308009	human	ensembl	74_37	-1	known	frame_shift_del	c.1019	p.G340fs	0.191	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A11	HGNC	ENSG00000174326				12	0	0	7	3	30
SOX9	0	genome.wustl.edu	37	17	70117712	70117714	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	70117712	70117714	GAA	-	DEL	SOX9	ENST00000245479	human	ensembl	74_37	+1	known	in_frame_del	c.180_182	p.K62in_frame_del	1.000:1.000:1.000	pfam_Sox_N	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX9	HGNC	ENSG00000125398				23	0	0	12	7	36.8421
ZBTB4	0	genome.wustl.edu	37	17	7370109	7370110	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7370109	7370110	-	G	INS	ZBTB4	ENST00000311403	human	ensembl	74_37	-1	known	frame_shift_ins	c.12_11	p.A5fs	0.997:1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282				8	0	0	11	3	21.4286
FOXJ1	0	genome.wustl.edu	37	17	74133832	74133833	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	74133832	74133833	-	G	INS	FOXJ1	ENST00000322957	human	ensembl	74_37	-1	known	frame_shift_ins	c.868_867	p.S289fs	1.000:1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,prints_TF_fork_head,pfscan_TF_fork_head	-	no_errors	FOXJ1	HGNC	ENSG00000129654				42	0	0	26	12	31.5789
FXR2	0	genome.wustl.edu	37	17	7496122	7496122	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7496122	7496122	G	-	DEL	FXR2	ENST00000250113	human	ensembl	74_37	-1	known	frame_shift_del	c.1619	p.P540fs	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245				69	0	0	48	24	33.3333
WRAP53	0	genome.wustl.edu	37	17	7604749	7604749	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7604749	7604749	G	-	DEL	WRAP53	ENST00000498311	human	ensembl	74_37	+1	known	frame_shift_del	c.736	p.V247fs	0.011	NULL	superfamily_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499				117	0	0	62	34	35.4167
DNAH2	0	genome.wustl.edu	37	17	7640418	7640418	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7640418	7640418	T	-	DEL	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	frame_shift_del	c.1012	p.L339fs	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				122	0	0	55	30	35.2941
CBX2	0	genome.wustl.edu	37	17	77755692	77755692	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	77755692	77755692	G	-	DEL	CBX2	ENST00000269399	human	ensembl	74_37	+1	known	frame_shift_del	c.380	p.W129fs	0.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX2	HGNC	ENSG00000173894				141	0	0	67	37	35.5769
CBX8	0	genome.wustl.edu	37	17	77768648	77768648	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	77768648	77768648	C	-	DEL	CBX8	ENST00000269385	human	ensembl	74_37	-1	known	frame_shift_del	c.956	p.G319fs	0.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570				30	0	0	16	10	38.4615
CHD3	0	genome.wustl.edu	37	17	7798765	7798765	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	7798765	7798765	C	-	DEL	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	frame_shift_del	c.1612	p.R540fs	0.007	superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				154	0	0	129	16	11.0345
CCDC40	0	genome.wustl.edu	37	17	78022482	78022483	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	78022482	78022483	AG	-	DEL	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	frame_shift_del	c.777_778	p.R261fs	0.000:0.001	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				52	0	0	52	8	13.3333
CCDC137	0	genome.wustl.edu	37	17	79639138	79639138	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	79639138	79639138	C	-	DEL	CCDC137	ENST00000329214	human	ensembl	74_37	+1	known	frame_shift_del	c.613	p.P206fs	1.000	NULL	NULL	-	no_errors	CCDC137	HGNC	ENSG00000185298				56	0	0	45	23	33.8235
LRRC45	0	genome.wustl.edu	37	17	79985564	79985564	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	79985564	79985564	G	-	DEL	LRRC45	ENST00000306688	human	ensembl	74_37	+1	known	frame_shift_del	c.848	p.R283fs	0.047	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC45	HGNC	ENSG00000169683				28	0	0	20	11	35.4839
CCDC57	0	genome.wustl.edu	37	17	80059474	80059474	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	80059474	80059474	C	-	DEL	CCDC57	ENST00000584717	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	CCDC57	HGNC	ENSG00000176155				56	0	0	36	31	46.2687
RANGRF	0	genome.wustl.edu	37	17	8192722	8192722	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	8192722	8192722	A	-	DEL	RANGRF	ENST00000226105	human	ensembl	74_37	+1	known	frame_shift_del	c.341	p.N115fs	1.000	pfam_Mog1,superfamily_Mog1/PsbP_a/b/a-sand	pfam_Mog1,superfamily_Mog1/PsbP_a/b/a-sand	-	no_errors	RANGRF	HGNC	ENSG00000108961				66	0	0	21	19	47.5
ARHGEF15	0	genome.wustl.edu	37	17	8224297	8224298	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	8224297	8224298	-	C	INS	ARHGEF15	ENST00000361926	human	ensembl	74_37	+1	known	frame_shift_ins	c.2512_2513	p.P841fs	0.000:0.001	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF15	HGNC	ENSG00000198844				115	0	0	76	20	20.8333
CCDC42	0	genome.wustl.edu	37	17	8633476	8633476	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	17	8633476	8633476	T	-	DEL	CCDC42	ENST00000293845	human	ensembl	74_37	-1	known	frame_shift_del	c.923	p.K308fs	0.999	NULL	NULL	-	no_errors	CCDC42	HGNC	ENSG00000161973				51	0	0	31	21	40.3846
CEP76	0	genome.wustl.edu	37	18	12699829	12699829	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	12699829	12699829	T	-	DEL	CEP76	ENST00000262127	human	ensembl	74_37	-1	known	frame_shift_del	c.295	p.T99fs	1.000	NULL	superfamily_C2_dom	-	no_errors	CEP76	HGNC	ENSG00000101624				10	0	0	9	4	30.7692
RBBP8	0	genome.wustl.edu	37	18	20572853	20572853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	20572853	20572853	A	-	DEL	RBBP8	ENST00000327155	human	ensembl	74_37	+1	known	frame_shift_del	c.1063	p.K357fs	0.002	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773				109	0	0	61	17	21.7949
ENSG00000263698	0	genome.wustl.edu	37	18	28711868	28711868	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	28711868	28711868	T	-	DEL	ENSG00000263698	ENST00000582307	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.072	-	-	-	no_errors	RP11-408H20.3	Clone_based_vega_gene	ENSG00000263698				21	0	0	10	3	23.0769
ENSG00000252258	0	genome.wustl.edu	37	18	3025533	3025533	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	3025533	3025533	A	-	DEL	ENSG00000252258	ENST00000516449	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA70	RFAM	ENSG00000252258				38	0	0	14	14	50
KLHL14	0	genome.wustl.edu	37	18	30349862	30349862	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	30349862	30349862	G	-	DEL	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	frame_shift_del	c.693	p.V232fs	0.982	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				61	0	0	50	23	31.5068
CCDC178	0	genome.wustl.edu	37	18	30913143	30913143	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	30913143	30913143	T	-	DEL	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	frame_shift_del	c.874	p.M292fs	0.000	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				47	0	0	11	17	60.7143
FHOD3	0	genome.wustl.edu	37	18	34205516	34205516	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	34205516	34205516	C	-	DEL	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_del	c.1000	p.S336fs	0.999	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775				115	0	0	42	42	50
ZBTB7C	0	genome.wustl.edu	37	18	45567075	45567076	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	45567075	45567076	-	C	INS	ZBTB7C	ENST00000332053	human	ensembl	74_37	-1	known	frame_shift_ins	c.404_403	p.E135fs	1.000:0.994	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828				49	0	0	23	7	23.3333
LMAN1	0	genome.wustl.edu	37	18	57013194	57013194	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	57013194	57013194	T	-	DEL	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	frame_shift_del	c.912	p.E305fs	0.898	superfamily_HMG_box_dom	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695				113	1	0.877193	34	57	62.6374
SERPINB12	0	genome.wustl.edu	37	18	61228376	61228376	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	61228376	61228376	A	-	DEL	SERPINB12	ENST00000269491	human	ensembl	74_37	+1	known	frame_shift_del	c.443	p.N150fs	0.009	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB12	HGNC	ENSG00000166634				119	0	0	52	19	26.7606
ADNP2	0	genome.wustl.edu	37	18	77894261	77894261	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	18	77894261	77894261	C	-	DEL	ADNP2	ENST00000262198	human	ensembl	74_37	+1	known	frame_shift_del	c.965	p.P324fs	0.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP2	HGNC	ENSG00000101544				110	0	0	70	52	42.623
RAVER1	0	genome.wustl.edu	37	19	10433397	10433397	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	10433397	10433397	G	-	DEL	RAVER1	ENST00000293677	human	ensembl	74_37	-1	known	frame_shift_del	c.1148	p.P383fs	0.994	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RAVER1	HGNC	ENSG00000161847				11	0	0	8	4	33.3333
TYK2	0	genome.wustl.edu	37	19	10476274	10476274	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	10476274	10476274	C	-	DEL	TYK2	ENST00000264818	human	ensembl	74_37	-1	known	frame_shift_del	c.930	p.P312fs	0.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397				92	0	0	67	27	28.7234
ELAVL3	0	genome.wustl.edu	37	19	11577604	11577605	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	11577604	11577605	-	C	INS	ELAVL3	ENST00000359227	human	ensembl	74_37	-1	known	frame_shift_ins	c.48_47	p.A18fs	1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361				37	0	0	37	8	17.7778
ZNF878	0	genome.wustl.edu	37	19	12155504	12155504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	12155504	12155504	A	-	DEL	ZNF878	ENST00000602107	human	ensembl	74_37	-1	known	frame_shift_del	c.853	p.S285fs	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446				105	0	0	78	8	9.30233
C19orf26	0	genome.wustl.edu	37	19	1229343	1229343	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	1229343	1229343	C	-	DEL	C19orf26	ENST00000382477	human	ensembl	74_37	-1	known	frame_shift_del	c.2013	p.C672fs	0.006	NULL	NULL	-	no_errors	C19orf26	HGNC	ENSG00000099625				8	0	0	8	4	33.3333
MIDN	0	genome.wustl.edu	37	19	1254338	1254338	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	1254338	1254338	C	-	DEL	MIDN	ENST00000300952	human	ensembl	74_37	+1	known	frame_shift_del	c.557	p.V188fs	0.027	NULL	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	MIDN	HGNC	ENSG00000167470				11	0	0	10	5	33.3333
MRI1	0	genome.wustl.edu	37	19	13882968	13882968	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	13882968	13882968	C	-	DEL	MRI1	ENST00000040663	human	ensembl	74_37	+1	known	frame_shift_del	c.983	p.H330fs	1.000	pfam_IF-2B-related,tigrfam_IF-2BI_MTNA,tigrfam_Initiation_fac_2B_a/b/d	pfam_IF-2B-related,tigrfam_IF-2BI_MTNA,tigrfam_Initiation_fac_2B_a/b/d	-	no_errors	MRI1	HGNC	ENSG00000037757				125	0	0	59	30	33.7079
MIR27A	0	genome.wustl.edu	37	19	13947256	13947256	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	13947256	13947256	G	-	DEL	MIR27A	ENST00000385073	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.760	-	-	-	no_errors	MIR27A	HGNC	ENSG00000207808				21	0	0	15	6	28.5714
C19orf57	0	genome.wustl.edu	37	19	14000445	14000445	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	14000445	14000445	G	-	DEL	C19orf57	ENST00000454313	human	ensembl	74_37	-1	known	frame_shift_del	c.1224	p.G409fs	0.000	NULL	NULL	-	no_errors	C19orf57	HGNC	ENSG00000132016				63	0	0	49	7	12.5
CC2D1A	0	genome.wustl.edu	37	19	14038730	14038730	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	14038730	14038730	G	-	DEL	CC2D1A	ENST00000318003	human	ensembl	74_37	+1	known	frame_shift_del	c.2341	p.R783fs	0.999	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1A	HGNC	ENSG00000132024				247	0	0	145	42	22.4599
DAZAP1	0	genome.wustl.edu	37	19	1430254	1430254	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	1430254	1430254	C	-	DEL	DAZAP1	ENST00000233078	human	ensembl	74_37	+1	known	frame_shift_del	c.764	p.P257fs	0.998	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	DAZAP1	HGNC	ENSG00000071626				36	0	0	21	9	30
APC2	0	genome.wustl.edu	37	19	1468912	1468912	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	1468912	1468912	C	-	DEL	APC2	ENST00000233607	human	ensembl	74_37	+1	known	frame_shift_del	c.5612	p.S1873fs	0.997	pfam_APC_basic_dom	pfam_APC_basic_dom,pfam_APC_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266				9	0	0	9	3	25
OR10H4	0	genome.wustl.edu	37	19	16059877	16059877	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	16059877	16059877	C	-	DEL	OR10H4	ENST00000322107	human	ensembl	74_37	+1	known	frame_shift_del	c.60	p.Q22fs	0.041	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H4	HGNC	ENSG00000176231				333	0	0	118	62	34.4444
GTPBP3	0	genome.wustl.edu	37	19	17448716	17448716	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	17448716	17448716	C	-	DEL	GTPBP3	ENST00000600610	human	ensembl	74_37	+1	known	frame_shift_del	c.87	p.T32fs	0.002	NULL	NULL	-	no_errors	GTPBP3	HGNC	ENSG00000130299				19	0	0	8	6	42.8571
CRTC1	0	genome.wustl.edu	37	19	18887993	18887993	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	18887993	18887993	C	-	DEL	CRTC1	ENST00000338797	human	ensembl	74_37	+1	known	frame_shift_del	c.1754	p.S588fs	1.000	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662				129	0	0	81	53	39.5522
BTBD2	0	genome.wustl.edu	37	19	1986508	1986508	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	1986508	1986508	G	-	DEL	BTBD2	ENST00000255608	human	ensembl	74_37	-1	known	frame_shift_del	c.1557	p.E520fs	0.024	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD2	HGNC	ENSG00000133243				85	0	0	79	15	15.9574
ZNF506	0	genome.wustl.edu	37	19	19906351	19906351	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	19906351	19906351	T	-	DEL	ZNF506	ENST00000443905	human	ensembl	74_37	-1	known	frame_shift_del	c.345	p.G116fs	0.861	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF506	HGNC	ENSG00000081665				75	0	0	73	7	8.75
ZNF737	0	genome.wustl.edu	37	19	20728495	20728496	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	20728495	20728496	-	T	INS	ZNF737	ENST00000427401	human	ensembl	74_37	-1	known	frame_shift_ins	c.514_513	p.P171fs	0.010:0.008	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440				33	0	0	21	11	34.375
ENSG00000266156	0	genome.wustl.edu	37	19	20988370	20988370	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	20988370	20988370	T	-	DEL	ENSG00000266156	ENST00000582722	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors	AC010329.1	Clone_based_ensembl_gene	ENSG00000266156				27	0	0	9	10	52.6316
SLC39A3	0	genome.wustl.edu	37	19	2737117	2737118	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	2737117	2737118	AG	-	DEL	SLC39A3	ENST00000269740	human	ensembl	74_37	-1	known	frame_shift_del	c.139_138	p.C47fs	1.000:1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A3	HGNC	ENSG00000141873				71	0	0	53	18	25.3521
RGS9BP	0	genome.wustl.edu	37	19	33167776	33167776	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	33167776	33167776	G	-	DEL	RGS9BP	ENST00000334176	human	ensembl	74_37	+1	known	frame_shift_del	c.607	p.G205fs	0.000	NULL	NULL	-	no_errors	RGS9BP	HGNC	ENSG00000186326				15	0	0	24	16	40
KMT2B	0	genome.wustl.edu	37	19	36210763	36210764	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	36210763	36210764	-	C	INS	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_ins	c.514_515	p.K176fs	0.976:0.976	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				173	1	0.574713	96	59	38.0645
KMT2B	0	genome.wustl.edu	37	19	36214728	36214728	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	36214728	36214728	G	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_del	c.3154	p.R1055fs	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				21	0	0	18	7	28
ARHGAP33	0	genome.wustl.edu	37	19	36268609	36268610	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	36268609	36268610	-	G	INS	ARHGAP33	ENST00000007510	human	ensembl	74_37	+1	known	frame_shift_ins	c.69_70	p.P25fs	0.530:0.997	NULL	pfam_RhoGAP_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP33	HGNC	ENSG00000004777				26	0	0	15	13	46.4286
KIRREL2	0	genome.wustl.edu	37	19	36357214	36357214	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	36357214	36357214	C	-	DEL	KIRREL2	ENST00000360202	human	ensembl	74_37	+1	known	frame_shift_del	c.1947	p.C652fs	0.003	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL2	HGNC	ENSG00000126259				152	1	0.653595	111	93	45.5882
ZNF382	0	genome.wustl.edu	37	19	37118176	37118176	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	37118176	37118176	G	-	DEL	ZNF382	ENST00000292928	human	ensembl	74_37	+1	known	frame_shift_del	c.1377	p.E461fs	0.909	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF382	HGNC	ENSG00000161298				66	0	0	86	22	20.3704
ZNF345	0	genome.wustl.edu	37	19	37368503	37368504	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	37368503	37368504	AT	-	DEL	ZNF345	ENST00000420450	human	ensembl	74_37	+1	known	frame_shift_del	c.771_772	p.I259fs	0.118:0.124	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF345	HGNC	ENSG00000251247				96	0	0	21	32	60.3774
MATK	0	genome.wustl.edu	37	19	3778509	3778509	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	3778509	3778509	T	-	DEL	MATK	ENST00000395045	human	ensembl	74_37	-1	known	frame_shift_del	c.1285	p.M429fs	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	MATK	HGNC	ENSG00000007264				38	0	0	36	10	21.7391
SPRED3	0	genome.wustl.edu	37	19	38881062	38881062	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	38881062	38881062	G	-	DEL	SPRED3	ENST00000338502	human	ensembl	74_37	+1	known	frame_shift_del	c.120	p.A43fs	1.000	smart_WH1/EVH1,pfscan_WH1/EVH1	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED3	HGNC	ENSG00000188766				19	0	0	15	15	50
SPRED3	0	genome.wustl.edu	37	19	38882864	38882866	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	38882864	38882866	CCT	-	DEL	SPRED3	ENST00000338502	human	ensembl	74_37	+1	known	in_frame_del	c.359_361	p.S124in_frame_del	1.000:0.995:0.997	NULL	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED3	HGNC	ENSG00000188766				32	0	0	31	3	8.82353
RYR1	0	genome.wustl.edu	37	19	38996554	38996554	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	38996554	38996554	A	-	DEL	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	frame_shift_del	c.8509	p.T2839fs	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				69	0	0	101	7	6.48148
ZFP36	0	genome.wustl.edu	37	19	39899071	39899071	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	39899071	39899071	C	-	DEL	ZFP36	ENST00000597629	human	ensembl	74_37	+1	known	frame_shift_del	c.731	p.L246fs	0.866	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36	HGNC	ENSG00000128016				104	0	0	120	35	22.5806
FBL	0	genome.wustl.edu	37	19	40325193	40325193	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	40325193	40325193	G	-	DEL	FBL	ENST00000221801	human	ensembl	74_37	-1	known	frame_shift_del	c.951	p.K318fs	1.000	NULL	pfam_Fibrillarin,pirsf_Fibrillarin,prints_Fibrillarin	-	no_errors	FBL	HGNC	ENSG00000105202				172	0	0	170	47	21.659
TTC9B	0	genome.wustl.edu	37	19	40723198	40723198	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	40723198	40723198	C	-	DEL	TTC9B	ENST00000311308	human	ensembl	74_37	-1	known	frame_shift_del	c.506	p.G169fs	1.000	pfscan_TPR-contain_dom	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC9B	HGNC	ENSG00000174521				55	0	0	25	28	52.8302
SIRT6	0	genome.wustl.edu	37	19	4180893	4180893	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	4180893	4180893	G	-	DEL	SIRT6	ENST00000337491	human	ensembl	74_37	-1	known	frame_shift_del	c.80	p.P27fs	0.998	NULL	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT6	HGNC	ENSG00000077463				59	0	0	46	11	19.2982
CD79A	0	genome.wustl.edu	37	19	42383610	42383610	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	42383610	42383610	C	-	DEL	CD79A	ENST00000221972	human	ensembl	74_37	+1	known	frame_shift_del	c.385	p.R131fs	0.007	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Phos_immunorcpt_sig_ITAM,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM,pfscan_Ig-like_dom	-	no_errors	CD79A	HGNC	ENSG00000105369				15	0	0	19	6	24
ZNF428	0	genome.wustl.edu	37	19	44111874	44111875	+	In_Frame_Ins	INS	-	-	TCC			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44111874	44111875	-	TCC	INS	ZNF428	ENST00000300811	human	ensembl	74_37	-1	known	in_frame_ins	c.462_461	p.158in_frame_insE	0.000:0.006	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF428	HGNC	ENSG00000131116				32	0	0	46	12	20.6897
ZNF234	0	genome.wustl.edu	37	19	44654608	44654608	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44654608	44654608	A	-	DEL	ZNF234	ENST00000426739	human	ensembl	74_37	+1	known	frame_shift_del	c.185	p.K64fs	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF234	HGNC	ENSG00000263002				12	0	0	6	8	57.1429
ZNF180	0	genome.wustl.edu	37	19	44982338	44982338	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	44982338	44982338	T	-	DEL	ZNF180	ENST00000221327	human	ensembl	74_37	-1	known	frame_shift_del	c.360	p.D121fs	0.021	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384				70	0	0	35	19	35.1852
APOC1	0	genome.wustl.edu	37	19	45419666	45419666	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45419666	45419666	A	-	DEL	APOC1	ENST00000592885	human	ensembl	74_37	+1	novel	frame_shift_del	c.278	p.T96fs	0.005	NULL	pfam_ApoC-I	-	no_errors	APOC1	HGNC	ENSG00000130208				26	0	0	24	10	29.4118
ERCC2	0	genome.wustl.edu	37	19	45855886	45855886	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45855886	45855886	C	-	DEL	ERCC2	ENST00000391945	human	ensembl	74_37	-1	known	frame_shift_del	c.1924	p.D642fs	1.000	superfamily_P-loop_NTPase,smart_ATP-dep_Helicase_C,prints_XPGD_DNA_repair,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DUF1227,pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,prints_XPGD_DNA_repair,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	ERCC2	HGNC	ENSG00000104884				59	0	0	61	46	42.9907
PPP1R13L	0	genome.wustl.edu	37	19	45899436	45899436	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	45899436	45899436	C	-	DEL	PPP1R13L	ENST00000360957	human	ensembl	74_37	-1	known	frame_shift_del	c.893	p.G298fs	0.140	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881				29	0	0	8	12	60
TICAM1	0	genome.wustl.edu	37	19	4816465	4816465	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	4816465	4816465	G	-	DEL	TICAM1	ENST00000248244	human	ensembl	74_37	-1	known	frame_shift_del	c.1925	p.P642fs	0.003	pirsf_TICAM1	superfamily_TIR_dom,pirsf_TICAM1	-	no_errors	TICAM1	HGNC	ENSG00000127666				41	0	0	32	9	21.9512
FAM83E	0	genome.wustl.edu	37	19	49107038	49107038	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49107038	49107038	G	-	DEL	FAM83E	ENST00000263266	human	ensembl	74_37	-1	known	frame_shift_del	c.889	p.Q297fs	0.001	NULL	pfam_DUF1669,superfamily_Acyl_CoA_acyltransferase	-	no_errors	FAM83E	HGNC	ENSG00000105523				34	0	0	44	11	20
BAX	0	genome.wustl.edu	37	19	49458971	49458971	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49458971	49458971	G	-	DEL	BAX	ENST00000293288	human	ensembl	74_37	+1	known	frame_shift_del	c.114	p.E41fs	0.588	NULL	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAX	HGNC	ENSG00000087088				100	0	0	67	59	46.8254
SNRNP70	0	genome.wustl.edu	37	19	49611078	49611083	+	Splice_Site	DEL	GGGACC	GGGACC	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	GGGACC	GGGACC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	49611078	49611083	GGGACC	-	DEL	SNRNP70	ENST00000221448	human	ensembl	74_37	+1	known	splice_site_del	c.666-1_666-1	e9-1	1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors	SNRNP70	HGNC	ENSG00000104852				17	0	0	21	7	25
SCAF1	0	genome.wustl.edu	37	19	50158042	50158042	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	50158042	50158042	C	-	DEL	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	frame_shift_del	c.3533	p.T1181fs	0.934	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				86	0	0	27	73	73
SHANK1	0	genome.wustl.edu	37	19	51220109	51220109	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	51220109	51220109	C	-	DEL	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	frame_shift_del	c.68	p.G23fs	0.997	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				17	0	0	16	13	44.8276
SIGLEC9	0	genome.wustl.edu	37	19	51633196	51633196	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	51633196	51633196	C	-	DEL	SIGLEC9	ENST00000250360	human	ensembl	74_37	+1	known	frame_shift_del	c.1252	p.P419fs	0.019	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SIGLEC9	HGNC	ENSG00000129450				158	0	0	74	73	49.6599
SIGLEC17P	0	genome.wustl.edu	37	19	51671447	51671447	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	51671447	51671447	C	-	DEL	SIGLEC17P	ENST00000341811	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SIGLEC17P	HGNC	ENSG00000171101				57	0	0	111	49	30.625
PTPRS	0	genome.wustl.edu	37	19	5222731	5222731	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	5222731	5222731	G	-	DEL	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	frame_shift_del	c.3075	p.V1026fs	0.579	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				46	0	0	26	3	10.3448
PTPRS	0	genome.wustl.edu	37	19	5244243	5244243	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	5244243	5244243	G	-	DEL	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	frame_shift_del	c.1242	p.S415fs	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				72	0	0	45	25	35.7143
ZNF613	0	genome.wustl.edu	37	19	52447817	52447818	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	52447817	52447818	-	G	INS	ZNF613	ENST00000293471	human	ensembl	74_37	+1	known	frame_shift_ins	c.681_682	p.E228fs	0.955:1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024				214	0	0	240	54	18.3673
LOC101928780	0	genome.wustl.edu	37	19	54627848	54627848	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	54627848	54627848	C	-	DEL	LOC101928780	ENST00000452097	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC012314.8	Clone_based_vega_gene	ENSG00000237017				143	0	0	123	32	20.6452
LOC101928780	0	genome.wustl.edu	37	19	54628061	54628061	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	54628061	54628061	C	-	DEL	LOC101928780	ENST00000452097	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC012314.8	Clone_based_vega_gene	ENSG00000237017				65	0	0	64	19	22.8916
PPP1R12C	0	genome.wustl.edu	37	19	55607456	55607456	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	55607456	55607456	G	-	DEL	PPP1R12C	ENST00000263433	human	ensembl	74_37	-1	known	frame_shift_del	c.1116	p.I373fs	0.157	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12C	HGNC	ENSG00000125503				140	0	0	107	44	29.1391
U2AF2	0	genome.wustl.edu	37	19	56171887	56171887	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	56171887	56171887	C	-	DEL	U2AF2	ENST00000308924	human	ensembl	74_37	+1	known	frame_shift_del	c.236	p.R81fs	1.000	tigrfam_U2AF_lg	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_U2AF_lg	-	no_errors	U2AF2	HGNC	ENSG00000063244				42	0	0	49	11	18.3333
EPN1	0	genome.wustl.edu	37	19	56203184	56203184	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	56203184	56203184	G	-	DEL	EPN1	ENST00000411543	human	ensembl	74_37	+1	known	frame_shift_del	c.1085	p.G364fs	1.000	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN1	HGNC	ENSG00000063245				145	0	0	145	23	13.6905
ZNF814	0	genome.wustl.edu	37	19	58384582	58384583	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	58384582	58384583	-	A	INS	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	frame_shift_ins	c.2176_2175	p.R725fs	0.215:0.342	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				31	0	0	29	7	19.4444
ZSCAN1	0	genome.wustl.edu	37	19	58565357	58565357	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	58565357	58565357	T	-	DEL	ZSCAN1	ENST00000282326	human	ensembl	74_37	+1	known	frame_shift_del	c.1165	p.F389fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467				29	0	0	31	9	22.5
FGF22	0	genome.wustl.edu	37	19	643528	643528	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	643528	643528	G	-	DEL	FGF22	ENST00000215530	human	ensembl	74_37	+1	known	frame_shift_del	c.437	p.150fs	0.001	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF22	HGNC	ENSG00000070388				25	0	0	9	14	60.8696
TIMM44	0	genome.wustl.edu	37	19	8002975	8002975	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	8002975	8002975	T	-	DEL	TIMM44	ENST00000270538	human	ensembl	74_37	-1	known	frame_shift_del	c.249	p.K83fs	0.998	pirsf_Tim44,tigrfam_Tim44	pfam_Tim44-like_dom,smart_Tim44-like_dom,pirsf_Tim44,tigrfam_Tim44	-	no_errors	TIMM44	HGNC	ENSG00000104980				239	0	0	113	26	18.705
FBN3	0	genome.wustl.edu	37	19	8196625	8196625	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	19	8196625	8196625	C	-	DEL	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	frame_shift_del	c.1803	p.L602fs	0.999	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				43	0	0	32	13	28.8889
GRHL1	0	genome.wustl.edu	37	2	10140799	10140800	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	10140799	10140800	-	G	INS	GRHL1	ENST00000324907	human	ensembl	74_37	+1	known	frame_shift_ins	c.1821_1822	p.S609fs	0.000:0.991	NULL	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317				217	0	0	184	18	8.91089
IL1R2	0	genome.wustl.edu	37	2	102644749	102644749	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	102644749	102644749	G	-	DEL	IL1R2	ENST00000332549	human	ensembl	74_37	+1	known	frame_shift_del	c.1092	p.G366fs	0.985	prints_IL-1_rcpt_II-typ	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1R2	HGNC	ENSG00000115590				128	0	0	75	33	30.5556
ATP6V1C2	0	genome.wustl.edu	37	2	10912688	10912688	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	10912688	10912688	A	-	DEL	ATP6V1C2	ENST00000272238	human	ensembl	74_37	+1	known	frame_shift_del	c.590	p.T199fs	1.000	pfam_ATPase_V1-cplx_csu	pfam_ATPase_V1-cplx_csu	-	no_errors	ATP6V1C2	HGNC	ENSG00000143882				471	0	0	459	34	6.89655
RANBP2	0	genome.wustl.edu	37	2	109389413	109389413	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	109389413	109389413	T	-	DEL	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	frame_shift_del	c.8203	p.C2737fs	0.997	pfam_IR1-M	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				33	0	0	15	4	21.0526
SEPT10	0	genome.wustl.edu	37	2	110301828	110301828	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	110301828	110301828	T	-	DEL	SEPT10	ENST00000356688	human	ensembl	74_37	-1	putative	frame_shift_del	c.1506	p.K502fs	0.004	NULL	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	-	no_errors	SEPT10	HGNC	ENSG00000186522				58	0	0	17	9	34.6154
NPHP1	0	genome.wustl.edu	37	2	110926098	110926098	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	110926098	110926098	T	-	DEL	NPHP1	ENST00000316534	human	ensembl	74_37	-1	known	frame_shift_del	c.555	p.K185fs	0.398	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061				133	0	0	48	24	33.3333
CHCHD5	0	genome.wustl.edu	37	2	113346506	113346507	+	RNA	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	113346506	113346507	-	C	INS	CHCHD5	ENST00000469030	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	CHCHD5	HGNC	ENSG00000125611				33	0	0	24	3	11.1111
PAX8	0	genome.wustl.edu	37	2	113993122	113993122	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	113993122	113993122	G	-	DEL	PAX8	ENST00000429538	human	ensembl	74_37	-1	known	frame_shift_del	c.936	p.E313fs	0.996	NULL	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX8	HGNC	ENSG00000125618				53	0	0	44	23	34.3284
CYP27C1	0	genome.wustl.edu	37	2	127944877	127944877	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	127944877	127944877	G	-	DEL	CYP27C1	ENST00000335247	human	ensembl	74_37	-1	known	frame_shift_del	c.1089	p.I364fs	0.995	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP27C1	HGNC	ENSG00000186684				104	0	0	68	18	20.9302
CYP27C1	0	genome.wustl.edu	37	2	127944879	127944880	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	127944879	127944880	-	C	INS	CYP27C1	ENST00000335247	human	ensembl	74_37	-1	known	frame_shift_ins	c.1087_1086	p.P362fs	0.228:0.196	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP27C1	HGNC	ENSG00000186684				97	0	0	57	27	32.1429
ERCC3	0	genome.wustl.edu	37	2	128030506	128030506	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	128030506	128030506	C	-	DEL	ERCC3	ENST00000285398	human	ensembl	74_37	-1	known	frame_shift_del	c.1762	p.E588fs	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C,tigrfam_Helicase_Ercc3	pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_Helicase_Ercc3,tigrfam_Helicase_Ercc3	-	no_errors	ERCC3	HGNC	ENSG00000163161				94	0	0	43	17	28.3333
IWS1	0	genome.wustl.edu	37	2	128238676	128238676	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	128238676	128238676	T	-	DEL	IWS1	ENST00000295321	human	ensembl	74_37	-1	known	frame_shift_del	c.2404	p.S802fs	1.000	NULL	pfam_TFIIS_N,superfamily_TFIIS_N	-	no_errors	IWS1	HGNC	ENSG00000163166				115	0	0	68	29	29.8969
NXPH2	0	genome.wustl.edu	37	2	139428706	139428707	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	139428706	139428707	-	T	INS	NXPH2	ENST00000272641	human	ensembl	74_37	-1	known	frame_shift_ins	c.581_580	p.T194fs	1.000:1.000	pfam_NXPH/NXPE,pirsf_Neurexophilin	pfam_NXPH/NXPE,pirsf_Neurexophilin	-	no_errors	NXPH2	HGNC	ENSG00000144227				44	0	0	23	12	34.2857
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				141	0	0	26	39	60
RIF1	0	genome.wustl.edu	37	2	152320541	152320541	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	152320541	152320541	A	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.4507	p.K1505fs	0.001	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				104	0	0	63	28	30.7692
KCNJ3	0	genome.wustl.edu	37	2	155711558	155711559	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	155711558	155711559	-	A	INS	KCNJ3	ENST00000295101	human	ensembl	74_37	+1	known	frame_shift_ins	c.1239_1240	p.L415fs	0.994:1.000	pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ3	HGNC	ENSG00000162989				155	0	0	75	41	35.3448
NR4A2	0	genome.wustl.edu	37	2	157186374	157186374	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	157186374	157186374	G	-	DEL	NR4A2	ENST00000539077	human	ensembl	74_37	-1	known	frame_shift_del	c.358	p.Q120fs	1.000	prints_NURR_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_NURR_rcpt,prints_Nuc_orph_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	NR4A2	HGNC	ENSG00000153234				102	0	0	82	12	12.766
GCG	0	genome.wustl.edu	37	2	163003894	163003895	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	163003894	163003895	-	A	INS	GCG	ENST00000375497	human	ensembl	74_37	-1	known	frame_shift_ins	c.223_222	p.V74fs	1.000:1.000	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP,prints_Glucagon_GIP_secretin_VIP	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP,prints_Glucagon_GIP_secretin_VIP	-	no_errors	GCG	HGNC	ENSG00000115263				226	0	0	133	37	21.7647
PXDN	0	genome.wustl.edu	37	2	1652960	1652960	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	1652960	1652960	G	-	DEL	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	frame_shift_del	c.2592	p.N865fs	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				36	0	0	40	13	24.5283
COBLL1	0	genome.wustl.edu	37	2	165551296	165551296	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	165551296	165551296	A	-	DEL	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_del	c.2921	p.L974fs	0.972	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				52	0	0	14	35	71.4286
SCN3A	0	genome.wustl.edu	37	2	165984441	165984441	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	165984441	165984441	A	-	DEL	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	frame_shift_del	c.3093	p.F1031fs	0.978	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				111	0	0	34	21	38.1818
SCN9A	0	genome.wustl.edu	37	2	167168247	167168247	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	167168247	167168247	G	-	DEL	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	frame_shift_del	c.20	p.P7fs	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				81	0	0	45	27	37.5
NOSTRIN	0	genome.wustl.edu	37	2	169699563	169699563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	169699563	169699563	A	-	DEL	NOSTRIN	ENST00000444448	human	ensembl	74_37	+1	known	frame_shift_del	c.566	p.N191fs	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_FCH_dom,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NOSTRIN	HGNC	ENSG00000163072				63	0	0	29	12	29.2683
LRP2	0	genome.wustl.edu	37	2	169997025	169997025	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	169997025	169997025	G	-	DEL	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	frame_shift_del	c.13139	p.P4380fs	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				65	0	0	45	13	22.4138
MYO3B	0	genome.wustl.edu	37	2	171191923	171191924	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	171191923	171191924	-	A	INS	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	frame_shift_ins	c.805_806	p.W271fs	0.997:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				36	0	0	12	3	20
SP5	0	genome.wustl.edu	37	2	171573060	171573060	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	171573060	171573060	C	-	DEL	SP5	ENST00000375281	human	ensembl	74_37	+1	known	frame_shift_del	c.343	p.A117fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP5	HGNC	ENSG00000204335				36	0	0	41	10	19.6078
KIAA1715	0	genome.wustl.edu	37	2	176856973	176856973	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	176856973	176856973	A	-	DEL	KIAA1715	ENST00000544803	human	ensembl	74_37	-1	known	frame_shift_del	c.243	p.F81fs	1.000	NULL	pfam_DUF2296	-	no_errors	KIAA1715	HGNC	ENSG00000144320				59	0	0	20	6	23.0769
RAD51AP2	0	genome.wustl.edu	37	2	17697088	17697088	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	17697088	17697088	A	-	DEL	RAD51AP2	ENST00000399080	human	ensembl	74_37	-1	known	frame_shift_del	c.2595	p.P866fs	0.000	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842				22	0	0	13	4	23.5294
HOXD3	0	genome.wustl.edu	37	2	177033976	177033976	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	177033976	177033976	C	-	DEL	HOXD3	ENST00000249440	human	ensembl	74_37	+1	known	frame_shift_del	c.134	p.H47fs	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD3	HGNC	ENSG00000128652				175	1	0.568182	89	38	29.9213
HNRNPA3	0	genome.wustl.edu	37	2	178077589	178077589	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	178077589	178077589	G	-	DEL	HNRNPA3	ENST00000392524	human	ensembl	74_37	+1	known	frame_shift_del	c.62	p.E23fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA3	HGNC	ENSG00000170144				8	0	0	1	5	83.3333
TTN	0	genome.wustl.edu	37	2	179398170	179398170	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	179398170	179398170	G	-	DEL	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_del	c.95468	p.P31823fs	0.013	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				73	0	0	38	29	43.2836
TTN-AS1	0	genome.wustl.edu	37	2	179497149	179497149	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	179497149	179497149	A	-	DEL	TTN-AS1	ENST00000589907	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				13	0	0	14	9	39.1304
ZSWIM2	0	genome.wustl.edu	37	2	187693167	187693167	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	187693167	187693167	T	-	DEL	ZSWIM2	ENST00000295131	human	ensembl	74_37	-1	known	frame_shift_del	c.1446	p.K482fs	0.061	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012				60	0	0	27	10	27.027
COQ10B	0	genome.wustl.edu	37	2	198318517	198318518	+	RNA	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	198318517	198318518	-	T	INS	COQ10B	ENST00000488445	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004:0.002	-	-	-	no_errors	COQ10B	HGNC	ENSG00000115520				11	0	0	8	5	38.4615
MARS2	0	genome.wustl.edu	37	2	198570830	198570830	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	198570830	198570830	C	-	DEL	MARS2	ENST00000282276	human	ensembl	74_37	+1	known	frame_shift_del	c.701	p.E236fs	0.356	pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS2	HGNC	ENSG00000247626				71	0	0	46	24	34.2857
BZW1	0	genome.wustl.edu	37	2	201685969	201685970	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	201685969	201685970	AG	-	DEL	BZW1	ENST00000409600	human	ensembl	74_37	+1	known	frame_shift_del	c.1169_1170	p.S391fs	1.000:1.000	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	-	no_errors	BZW1	HGNC	ENSG00000082153				105	0	0	63	30	32.2581
CASP10	0	genome.wustl.edu	37	2	202050593	202050593	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	202050593	202050593	G	-	DEL	CASP10	ENST00000286186	human	ensembl	74_37	+1	known	frame_shift_del	c.93	p.V33fs	0.107	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	pfam_Pept_C14_caspase,pfam_DED,superfamily_DEATH-like_dom,smart_DED,smart_Pept_C14A_p45_core,prints_Pept_C14A_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20	-	no_errors	CASP10	HGNC	ENSG00000003400				95	0	0	48	20	29.4118
ALS2	0	genome.wustl.edu	37	2	202598175	202598175	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	202598175	202598175	A	-	DEL	ALS2	ENST00000494017	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ALS2	HGNC	ENSG00000003393				45	0	0	14	8	36.3636
BMPR2	0	genome.wustl.edu	37	2	203420130	203420130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	203420130	203420130	A	-	DEL	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	frame_shift_del	c.1742	p.N583fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				95	0	0	52	35	40.2299
SDC1	0	genome.wustl.edu	37	2	20402089	20402090	+	RNA	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	20402089	20402090	-	C	INS	SDC1	ENST00000482879	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	SDC1	HGNC	ENSG00000115884				29	0	0	30	7	18.9189
PARD3B	0	genome.wustl.edu	37	2	206166297	206166298	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	206166297	206166298	-	A	INS	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	frame_shift_ins	c.2502_2503	p.T836fs	0.617:0.996	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				75	0	0	55	8	12.6984
ZDBF2	0	genome.wustl.edu	37	2	207172565	207172565	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	207172565	207172565	A	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.3313	p.N1106fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				48	0	0	22	13	37.1429
HS1BP3	0	genome.wustl.edu	37	2	20840864	20840864	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	20840864	20840864	G	-	DEL	HS1BP3	ENST00000304031	human	ensembl	74_37	-1	known	frame_shift_del	c.275	p.P92fs	0.835	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	HS1BP3	HGNC	ENSG00000118960				317	0	0	159	29	15.4255
XRCC5	0	genome.wustl.edu	37	2	216992351	216992351	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	216992351	216992351	A	-	DEL	XRCC5	ENST00000392132	human	ensembl	74_37	+1	known	frame_shift_del	c.891	p.N298fs	1.000	pfam_Ku70/Ku80_beta-barrel_dom,superfamily_SPOC_like_C_dom	pfam_Ku_N,pfam_Ku_PK_bind,pfam_Ku70/Ku80_beta-barrel_dom,pfam_Ku_C,superfamily_SPOC_like_C_dom,superfamily_Ku_PK_bind,smart_VWF_A,smart_Ku70/Ku80_beta-barrel_dom	-	no_errors	XRCC5	HGNC	ENSG00000079246				50	0	0	21	10	32.2581
IGFBP2	0	genome.wustl.edu	37	2	217525351	217525351	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	217525351	217525351	G	-	DEL	IGFBP2	ENST00000233809	human	ensembl	74_37	+1	known	frame_shift_del	c.514	p.G173fs	0.025	NULL	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-2	-	no_errors	IGFBP2	HGNC	ENSG00000115457				43	0	0	38	14	26.9231
VIL1	0	genome.wustl.edu	37	2	219301231	219301231	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	219301231	219301231	C	-	DEL	VIL1	ENST00000248444	human	ensembl	74_37	+1	known	frame_shift_del	c.1853	p.R620fs	0.000	smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VIL1	HGNC	ENSG00000127831				279	0	0	158	59	27.1889
SPEG	0	genome.wustl.edu	37	2	220337024	220337025	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	220337024	220337025	-	C	INS	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	frame_shift_ins	c.3911_3912	p.R1307fs	1.000:0.999	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				72	0	0	57	16	21.9178
SPEG	0	genome.wustl.edu	37	2	220349122	220349122	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	220349122	220349122	C	-	DEL	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	frame_shift_del	c.6937	p.R2315fs	0.003	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				27	0	0	39	18	31.5789
KCNE4	0	genome.wustl.edu	37	2	223917787	223917787	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	223917787	223917787	G	-	DEL	KCNE4	ENST00000281830	human	ensembl	74_37	+1	known	frame_shift_del	c.392	p.E133fs	1.000	pfam_K_chnl_volt-dep_bsu_KCNE	pfam_K_chnl_volt-dep_bsu_KCNE,prints_K_chnl_volt-dep_bsu_KCNE	-	no_errors	KCNE4	HGNC	ENSG00000152049				93	0	0	94	6	6
IRS1	0	genome.wustl.edu	37	2	227659841	227659841	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	227659841	227659841	G	-	DEL	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	frame_shift_del	c.3614	p.P1205fs	0.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				86	0	0	39	9	18.75
IRS1	0	genome.wustl.edu	37	2	227661395	227661396	+	In_Frame_Ins	INS	-	-	TGC			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	227661395	227661396	-	TGC	INS	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	in_frame_ins	c.2060_2059	p.687in_frame_insS	0.077:0.115	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				128	0	0	75	31	29.2453
IRS1	0	genome.wustl.edu	37	2	227662195	227662195	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	227662195	227662195	G	-	DEL	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	frame_shift_del	c.1260	p.S421fs	1.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				137	0	0	117	59	33.5227
SP140	0	genome.wustl.edu	37	2	231159025	231159025	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	231159025	231159025	A	-	DEL	SP140	ENST00000392045	human	ensembl	74_37	+1	known	frame_shift_del	c.2008	p.K672fs	0.001	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140	HGNC	ENSG00000079263				63	0	0	16	10	38.4615
UGT1A3	0	genome.wustl.edu	37	2	234638283	234638283	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	234638283	234638283	T	-	DEL	UGT1A3	ENST00000482026	human	ensembl	74_37	+1	known	frame_shift_del	c.511	p.L173fs	0.996	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A3	HGNC	ENSG00000243135				293	0	0	135	64	32.1608
RBM44	0	genome.wustl.edu	37	2	238725799	238725800	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	238725799	238725800	-	T	INS	RBM44	ENST00000316997	human	ensembl	74_37	+1	known	frame_shift_ins	c.240_241	p.S82fs	0.000:0.003	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483				95	0	0	58	28	32.5581
TRAF3IP1	0	genome.wustl.edu	37	2	239237830	239237830	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	239237830	239237830	G	-	DEL	TRAF3IP1	ENST00000373327	human	ensembl	74_37	+1	known	frame_shift_del	c.762	p.K257fs	0.019	NULL	NULL	-	no_errors	TRAF3IP1	HGNC	ENSG00000204104				20	0	0	14	6	30
HDAC4	0	genome.wustl.edu	37	2	240002823	240002823	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	240002823	240002823	G	-	DEL	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	frame_shift_del	c.2703	p.M902fs	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024				38	0	0	28	11	28.2051
PDCD1	0	genome.wustl.edu	37	2	242795104	242795104	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	242795104	242795104	G	-	DEL	PDCD1	ENST00000334409	human	ensembl	74_37	-1	known	frame_shift_del	c.105	p.T36fs	0.990	pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PDCD1	HGNC	ENSG00000188389				11	0	0	9	3	25
ITSN2	0	genome.wustl.edu	37	2	24494710	24494710	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	24494710	24494710	T	-	DEL	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	frame_shift_del	c.2182	p.I728fs	0.998	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				122	0	0	41	20	32.7869
IFT172	0	genome.wustl.edu	37	2	27676932	27676932	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	27676932	27676932	C	-	DEL	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	frame_shift_del	c.3628	p.A1210fs	0.994	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				214	0	0	104	54	34.1772
C2orf71	0	genome.wustl.edu	37	2	29294038	29294038	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	29294038	29294038	G	-	DEL	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	frame_shift_del	c.3090	p.S1031fs	0.966	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270				99	0	0	55	41	42.7083
TTC27	0	genome.wustl.edu	37	2	32859010	32859010	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	32859010	32859010	C	-	DEL	TTC27	ENST00000317907	human	ensembl	74_37	+1	known	frame_shift_del	c.334	p.P113fs	0.988	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699				133	0	0	70	11	13.5802
OXER1	0	genome.wustl.edu	37	2	42991088	42991089	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	42991088	42991089	-	C	INS	OXER1	ENST00000378661	human	ensembl	74_37	-1	known	frame_shift_ins	c.232_231	p.S77fs	0.000:0.001	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	OXER1	HGNC	ENSG00000162881				54	0	0	33	18	35.2941
RHOQ	0	genome.wustl.edu	37	2	46808174	46808174	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	46808174	46808174	A	-	DEL	RHOQ	ENST00000238738	human	ensembl	74_37	+1	known	frame_shift_del	c.570	p.R193fs	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOQ	HGNC	ENSG00000119729				78	0	0	42	11	20.7547
LHCGR	0	genome.wustl.edu	37	2	48915172	48915172	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	48915172	48915172	A	-	DEL	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	frame_shift_del	c.1764	p.F588fs	1.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039				127	0	0	49	25	33.7838
PSME4	0	genome.wustl.edu	37	2	54093345	54093345	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	54093345	54093345	T	-	DEL	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	frame_shift_del	c.5413	p.T1805fs	1.000	pfam_DUF3437,superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				149	0	0	57	5	8.06452
CCDC88A	0	genome.wustl.edu	37	2	55561621	55561622	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	55561621	55561622	-	T	INS	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	frame_shift_ins	c.2336_2335	p.I779fs	1.000:1.000	superfamily_Prefoldin	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				77	0	0	23	12	34.2857
CCDC88A	0	genome.wustl.edu	37	2	55561925	55561925	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	55561925	55561925	T	-	DEL	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	frame_shift_del	c.2032	p.T678fs	1.000	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				35	0	0	18	9	33.3333
ENSG00000226605	0	genome.wustl.edu	37	2	63053199	63053199	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	63053199	63053199	T	-	DEL	ENSG00000226605	ENST00000452397	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.047	-	-	-	no_errors	AC007098.1	Clone_based_vega_gene	ENSG00000226605				44	0	0	19	8	29.6296
MEIS1	0	genome.wustl.edu	37	2	66798467	66798467	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	66798467	66798467	C	-	DEL	MEIS1	ENST00000407092	human	ensembl	74_37	+1	known	frame_shift_del	c.1204	p.H404fs	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS1	HGNC	ENSG00000143995				19	0	0	20	4	16.6667
SNRNP27	0	genome.wustl.edu	37	2	70131463	70131463	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	70131463	70131463	T	-	DEL	SNRNP27	ENST00000409116	human	ensembl	74_37	+1	novel	frame_shift_del	c.426	p.S145fs	0.141	NULL	pfam_DUF1777	-	no_errors	SNRNP27	HGNC	ENSG00000124380				45	0	0	21	12	36.3636
ENSG00000228384	0	genome.wustl.edu	37	2	71221892	71221892	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	71221892	71221892	C	-	DEL	ENSG00000228384	ENST00000601923	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.789	-	-	-	no_errors	AC007040.6	Clone_based_vega_gene	ENSG00000228384				9	0	0	14	7	33.3333
MCEE	0	genome.wustl.edu	37	2	71337212	71337212	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	71337212	71337212	T	-	DEL	MCEE	ENST00000244217	human	ensembl	74_37	-1	known	frame_shift_del	c.419	p.K140fs	1.000	pfam_Glyas_Fos-R_dOase_dom,tigrfam_MeMalonyl-CoA_epimerase	pfam_Glyas_Fos-R_dOase_dom,tigrfam_MeMalonyl-CoA_epimerase	-	no_errors	MCEE	HGNC	ENSG00000124370				54	0	0	30	7	18.9189
TPRKB	0	genome.wustl.edu	37	2	73957881	73957881	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	73957881	73957881	A	-	DEL	TPRKB	ENST00000485758	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	TPRKB	HGNC	ENSG00000144034				53	0	0	15	6	28.5714
DCTN1	0	genome.wustl.edu	37	2	74593377	74593377	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	74593377	74593377	G	-	DEL	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	frame_shift_del	c.2754	p.S919fs	0.997	superfamily_P-loop_NTPase	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				148	0	0	87	33	27.5
INO80B	0	genome.wustl.edu	37	2	74682585	74682586	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	74682585	74682586	-	A	INS	INO80B	ENST00000452361	human	ensembl	74_37	+1	known	frame_shift_ins	c.111_112	p.H39fs	1.000:1.000	NULL	pfam_INO80B_C,pfam_Znf_HIT	-	no_errors	INO80B	HGNC	ENSG00000115274				63	0	0	59	15	20.2703
DQX1	0	genome.wustl.edu	37	2	74751023	74751023	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	74751023	74751023	T	-	DEL	DQX1	ENST00000495597	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	DQX1	HGNC	ENSG00000144045				16	0	0	9	6	40
HTRA2	0	genome.wustl.edu	37	2	74757472	74757473	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	74757472	74757473	-	G	INS	HTRA2	ENST00000258080	human	ensembl	74_37	+1	known	frame_shift_ins	c.339_340	p.A115fs	0.441:0.979	NULL	pfam_Peptidase_S1,pfam_PDZ,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA2	HGNC	ENSG00000115317				17	0	0	21	4	16
GCFC2	0	genome.wustl.edu	37	2	75897274	75897274	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	75897274	75897274	T	-	DEL	GCFC2	ENST00000321027	human	ensembl	74_37	-1	known	frame_shift_del	c.2093	p.K698fs	0.997	NULL	pfam_GCFC_dom	-	no_errors	GCFC2	HGNC	ENSG00000005436				83	0	0	32	9	21.9512
GGCX	0	genome.wustl.edu	37	2	85786171	85786172	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	85786171	85786172	-	G	INS	GGCX	ENST00000233838	human	ensembl	74_37	-1	known	frame_shift_ins	c.242_241	p.Q81fs	1.000:1.000	pfam_VKG_COase,smart_HTTM	pfam_VKG_COase,superfamily_RmlC_Cupin,smart_HTTM	-	no_errors	GGCX	HGNC	ENSG00000115486				78	0	0	43	17	28.3333
KIDINS220	0	genome.wustl.edu	37	2	8919228	8919228	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	8919228	8919228	A	-	DEL	KIDINS220	ENST00000256707	human	ensembl	74_37	-1	known	frame_shift_del	c.2412	p.F804fs	1.000	pfam_KAP_NTPase	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313				135	0	0	76	37	32.7434
SEMA4C	0	genome.wustl.edu	37	2	97529759	97529759	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	97529759	97529759	G	-	DEL	SEMA4C	ENST00000305476	human	ensembl	74_37	-1	known	frame_shift_del	c.1234	p.L412fs	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4C	HGNC	ENSG00000168758				56	0	0	37	21	36.2069
EIF5B	0	genome.wustl.edu	37	2	99977649	99977650	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	2	99977649	99977650	-	A	INS	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	frame_shift_ins	c.285_286	p.K98fs	0.928:0.998	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				79	0	0	44	5	10.2041
RRBP1	0	genome.wustl.edu	37	20	17640807	17640808	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	17640807	17640808	-	G	INS	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	frame_shift_ins	c.346_345	p.I115fs	0.000:0.000	pfam_Rib_rcpt_KP	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844				33	0	0	35	11	23.913
PAX1	0	genome.wustl.edu	37	20	21690007	21690007	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	21690007	21690007	C	-	DEL	PAX1	ENST00000398485	human	ensembl	74_37	+1	known	frame_shift_del	c.1207	p.A406fs	1.000	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX1	HGNC	ENSG00000125813				55	0	0	38	7	15.5556
HM13	0	genome.wustl.edu	37	20	30142485	30142488	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	30142485	30142488	AAAA	-	DEL	HM13	ENST00000474466	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.172:0.159:0.155:0.142	-	-	-	no_errors	HM13	HGNC	ENSG00000101294				31	0	0	21	11	34.375
FAM83C	0	genome.wustl.edu	37	20	33879731	33879731	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	33879731	33879731	G	-	DEL	FAM83C	ENST00000374408	human	ensembl	74_37	-1	known	frame_shift_del	c.377	p.P126fs	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83C	HGNC	ENSG00000125998				142	0	0	109	13	10.6557
GDF5	0	genome.wustl.edu	37	20	34025504	34025504	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	34025504	34025504	C	-	DEL	GDF5	ENST00000374369	human	ensembl	74_37	-1	known	frame_shift_del	c.205	p.A69fs	0.002	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF5	HGNC	ENSG00000125965				41	0	0	19	8	29.6296
KIAA1755	0	genome.wustl.edu	37	20	36841830	36841830	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	36841830	36841830	C	-	DEL	KIAA1755	ENST00000279024	human	ensembl	74_37	-1	known	frame_shift_del	c.3217	p.V1073fs	0.000	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633				12	0	0	6	5	45.4545
FAM83D	0	genome.wustl.edu	37	20	37580943	37580943	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	37580943	37580943	C	-	DEL	FAM83D	ENST00000217429	human	ensembl	74_37	+1	known	frame_shift_del	c.1628	p.H545fs	0.910	NULL	pfam_DUF1669	-	no_errors	FAM83D	HGNC	ENSG00000101447				69	0	0	25	14	35.8974
PANK2	0	genome.wustl.edu	37	20	3893120	3893120	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	3893120	3893120	T	-	DEL	PANK2	ENST00000316562	human	ensembl	74_37	+1	known	frame_shift_del	c.1251	p.F419fs	0.827	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK2	HGNC	ENSG00000125779				196	0	0	82	47	36.4341
WFDC10A	0	genome.wustl.edu	37	20	44258490	44258490	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	44258490	44258490	G	-	DEL	WFDC10A	ENST00000372643	human	ensembl	74_37	+1	known	frame_shift_del	c.38	p.C13fs	0.194	NULL	pfam_WAP-type_4-diS_core,superfamily_WAP-type_4-diS_core	-	no_errors	WFDC10A	HGNC	ENSG00000180305				47	0	0	24	6	20
SNX21	0	genome.wustl.edu	37	20	44469004	44469004	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	44469004	44469004	A	-	DEL	SNX21	ENST00000465997	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNX21	HGNC	ENSG00000124104				38	0	0	26	4	13.3333
TP53RK	0	genome.wustl.edu	37	20	45315634	45315634	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	45315634	45315634	G	-	DEL	TP53RK	ENST00000372114	human	ensembl	74_37	-1	known	frame_shift_del	c.520	p.L174fs	0.000	pfam_LipoPS_kinase,pfam_Prot_kinase_dom,pfam_RIO-like_kinase,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom,tigrfam_Bud32	pfam_LipoPS_kinase,pfam_Prot_kinase_dom,pfam_RIO-like_kinase,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom,tigrfam_Bud32	-	no_errors	TP53RK	HGNC	ENSG00000172315				174	0	0	61	34	35.7895
ZMYND8	0	genome.wustl.edu	37	20	45875071	45875072	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	45875071	45875072	-	T	INS	ZMYND8	ENST00000536340	human	ensembl	74_37	-1	known	frame_shift_ins	c.1986_1985	p.P663fs	1.000:1.000	NULL	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP_dom,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040				218	1	0.456621	109	51	31.875
DDX27	0	genome.wustl.edu	37	20	47858504	47858504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	47858504	47858504	A	-	DEL	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	frame_shift_del	c.2065	p.K691fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				127	1	0.78125	51	30	37.037
SALL4	0	genome.wustl.edu	37	20	50400983	50400983	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	50400983	50400983	C	-	DEL	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	frame_shift_del	c.2983	p.V995fs	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				117	0	0	40	30	42.8571
SYCP2	0	genome.wustl.edu	37	20	58452519	58452519	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	58452519	58452519	T	-	DEL	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_del	c.3071	p.N1024fs	1.000	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				52	0	0	25	12	32.4324
LAMA5	0	genome.wustl.edu	37	20	60885779	60885780	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	60885779	60885780	-	G	INS	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	frame_shift_ins	c.10388_10387	p.Q3463fs	0.000:0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				19	0	0	17	7	29.1667
DIDO1	0	genome.wustl.edu	37	20	61537402	61537402	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	61537402	61537402	T	-	DEL	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	frame_shift_del	c.1425	p.E476fs	0.986	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				146	1	0.680272	97	19	16.3793
COL20A1	0	genome.wustl.edu	37	20	61943276	61943277	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	20	61943276	61943277	-	C	INS	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	frame_shift_ins	c.1672_1673	p.R561fs	0.000:0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				10	0	0	7	5	41.6667
RBM11	0	genome.wustl.edu	37	21	15599662	15599663	+	RNA	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	15599662	15599663	-	A	INS	RBM11	ENST00000468643	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RBM11	HGNC	ENSG00000185272				27	0	0	25	9	26.4706
BTG3	0	genome.wustl.edu	37	21	18981391	18981391	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	18981391	18981391	T	-	DEL	BTG3	ENST00000339775	human	ensembl	74_37	-1	known	frame_shift_del	c.72	p.E25fs	1.000	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	pfam_Anti_prolifrtn,smart_Anti_prolifrtn,prints_Anti_prolifrtn	-	no_errors	BTG3	HGNC	ENSG00000154640				85	0	0	36	28	43.75
APP	0	genome.wustl.edu	37	21	27394181	27394182	+	In_Frame_Ins	INS	-	-	GTG			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	27394181	27394182	-	GTG	INS	APP	ENST00000346798	human	ensembl	74_37	-1	known	in_frame_ins	c.840_839	p.281in_frame_insT	0.056:0.932	NULL	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,pfam_Amyloid_glyco_Abeta,pfam_Prot_inh_Kunz-m,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,superfamily_Prot_inh_Kunz-m,smart_Amyloid_glyco_extra,smart_Prot_inh_Kunz-m,prints_Amyloid_glyco,prints_Amyloid_glyco_Abeta,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	APP	HGNC	ENSG00000142192				50	0	0	36	9	20
RWDD2B	0	genome.wustl.edu	37	21	30378685	30378685	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	30378685	30378685	A	-	DEL	RWDD2B	ENST00000286777	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RWDD2B	HGNC	ENSG00000156253				25	0	0	6	8	57.1429
DOPEY2	0	genome.wustl.edu	37	21	37586451	37586452	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	37586451	37586452	-	T	INS	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	frame_shift_ins	c.977_978	p.E329fs	1.000:1.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				99	0	0	61	25	29.0698
TTC3	0	genome.wustl.edu	37	21	38524243	38524243	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	38524243	38524243	A	-	DEL	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	frame_shift_del	c.2327	p.E779fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				88	0	0	58	14	19.4444
DYRK1A	0	genome.wustl.edu	37	21	38853058	38853059	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	38853058	38853059	-	A	INS	DYRK1A	ENST00000398960	human	ensembl	74_37	+1	known	frame_shift_ins	c.446_447	p.N151fs	1.000:0.984	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540				85	0	0	55	24	30.3797
DSCAM	0	genome.wustl.edu	37	21	41514615	41514615	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	41514615	41514615	G	-	DEL	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	frame_shift_del	c.3276	p.E1093fs	0.013	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				203	0	0	117	31	20.9459
AIRE	0	genome.wustl.edu	37	21	45710773	45710773	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	45710773	45710773	G	-	DEL	AIRE	ENST00000355347	human	ensembl	74_37	+1	known	frame_shift_del	c.84	p.G30fs	0.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	AIRE	HGNC	ENSG00000160224				125	1	0.793651	98	56	36.3636
PFKL	0	genome.wustl.edu	37	21	45744439	45744439	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	45744439	45744439	G	-	DEL	PFKL	ENST00000403390	human	ensembl	74_37	+1	known	frame_shift_del	c.1857	p.G621fs	1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKL	HGNC	ENSG00000141959				114	0	0	72	53	42.4
UBE2G2	0	genome.wustl.edu	37	21	46191156	46191158	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	46191156	46191158	AAA	-	DEL	UBE2G2	ENST00000477954	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000:0.000	-	-	-	no_errors	UBE2G2	HGNC	ENSG00000184787				23	0	0	5	4	44.4444
PCNT	0	genome.wustl.edu	37	21	47836237	47836237	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	21	47836237	47836237	G	-	DEL	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	frame_shift_del	c.6405	p.G2137fs	0.000	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				93	0	0	76	6	7.31707
CECR2	0	genome.wustl.edu	37	22	18028863	18028863	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	18028863	18028863	T	-	DEL	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	frame_shift_del	c.3820	p.L1275fs	0.998	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954				123	0	0	91	43	32.0896
SMTN	0	genome.wustl.edu	37	22	31486953	31486953	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	31486953	31486953	C	-	DEL	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	frame_shift_del	c.944	p.A318fs	0.784	NULL	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				124	0	0	67	31	31.6327
RFPL2	0	genome.wustl.edu	37	22	32589205	32589205	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	32589205	32589205	A	-	DEL	RFPL2	ENST00000248980	human	ensembl	74_37	-1	known	frame_shift_del	c.57	p.F19fs	0.003	NULL	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	RFPL2	HGNC	ENSG00000128253				129	0	0	91	9	9
TIMP3	0	genome.wustl.edu	37	22	33255321	33255321	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	33255321	33255321	G	-	DEL	TIMP3	ENST00000266085	human	ensembl	74_37	+1	known	frame_shift_del	c.593	p.A199fs	1.000	superfamily_TIMP-like_OB-fold	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP3	HGNC	ENSG00000100234				47	0	0	36	12	25
TIMP3	0	genome.wustl.edu	37	22	33255323	33255324	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	33255323	33255324	-	C	INS	TIMP3	ENST00000266085	human	ensembl	74_37	+1	known	frame_shift_ins	c.595_596	p.D202fs	1.000:0.990	NULL	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP3	HGNC	ENSG00000100234				46	0	0	29	16	35.5556
TNRC6B	0	genome.wustl.edu	37	22	40708591	40708591	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	40708591	40708591	G	-	DEL	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	frame_shift_del	c.4518	p.G1508fs	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				192	1	0.518135	108	57	34.5455
ACO2	0	genome.wustl.edu	37	22	41920925	41920927	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	41920925	41920927	AAG	-	DEL	ACO2	ENST00000216254	human	ensembl	74_37	+1	known	in_frame_del	c.1558_1560	p.K521in_frame_del	1.000:1.000:1.000	superfamily_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412				113	0	0	87	38	30.4
SREBF2	0	genome.wustl.edu	37	22	42293125	42293125	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	42293125	42293125	C	-	DEL	SREBF2	ENST00000361204	human	ensembl	74_37	+1	known	frame_shift_del	c.2565	p.P857fs	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	SREBF2	HGNC	ENSG00000198911				36	0	0	25	3	10.7143
FAM109B	0	genome.wustl.edu	37	22	42473376	42473377	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	42473376	42473377	-	G	INS	FAM109B	ENST00000321753	human	ensembl	74_37	+1	known	frame_shift_ins	c.79_80	p.P31fs	0.979:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FAM109B	HGNC	ENSG00000177096				149	0	0	119	9	7.03125
SAMM50	0	genome.wustl.edu	37	22	44392209	44392209	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	44392209	44392209	T	-	DEL	SAMM50	ENST00000493621	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAMM50	HGNC	ENSG00000100347				695	3	0.429799	419	205	32.8526
CELSR1	0	genome.wustl.edu	37	22	46931883	46931884	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	46931883	46931884	-	C	INS	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	frame_shift_ins	c.1185_1184	p.A396fs	0.515:0.994	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				49	0	0	29	11	27.5
ALG12	0	genome.wustl.edu	37	22	50302891	50302891	+	Splice_Site	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	50302891	50302891	C	-	DEL	ALG12	ENST00000330817	human	ensembl	74_37	-1	known	splice_site_del	c.768+1	e5+1	0.997	-	-	-	no_errors	ALG12	HGNC	ENSG00000182858				118	0	0	81	18	18.1818
SBF1	0	genome.wustl.edu	37	22	50898756	50898756	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	22	50898756	50898756	G	-	DEL	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	frame_shift_del	c.3228	p.S1077fs	0.039	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				101	0	0	62	39	38.6139
ABI3BP	0	genome.wustl.edu	37	3	100497280	100497280	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	100497280	100497280	A	-	DEL	ABI3BP	ENST00000469764	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	ABI3BP	HGNC	ENSG00000154175				23	0	0	16	5	23.8095
MYH15	0	genome.wustl.edu	37	3	108229398	108229398	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	108229398	108229398	A	-	DEL	MYH15	ENST00000273353	human	ensembl	74_37	-1	known	frame_shift_del	c.40	p.W14fs	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Lambda_DNA-bd_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYH15	HGNC	ENSG00000144821				107	0	0	53	13	19.697
DPPA4	0	genome.wustl.edu	37	3	109049606	109049606	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	109049606	109049606	T	-	DEL	DPPA4	ENST00000335658	human	ensembl	74_37	-1	known	frame_shift_del	c.444	p.K148fs	0.000	NULL	NULL	-	no_errors	DPPA4	HGNC	ENSG00000121570				90	0	0	54	17	23.9437
KIAA2018	0	genome.wustl.edu	37	3	113376978	113376979	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	113376978	113376979	CT	-	DEL	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	frame_shift_del	c.3551_3550	p.S1184fs	0.000:0.895	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				107	0	0	34	18	34.6154
ZDHHC23	0	genome.wustl.edu	37	3	113672641	113672641	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	113672641	113672641	A	-	DEL	ZDHHC23	ENST00000478793	human	ensembl	74_37	+1	known	frame_shift_del	c.256	p.V88fs	0.954	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC23	HGNC	ENSG00000184307				182	1	0.546448	88	27	23.4783
ZBTB20	0	genome.wustl.edu	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	114058003	114058003	G	-	DEL	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	frame_shift_del	c.2075	p.P692fs	0.678	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				86	0	0	52	38	42.2222
PARP14	0	genome.wustl.edu	37	3	122432364	122432366	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	122432364	122432366	AAG	-	DEL	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	in_frame_del	c.3713_3715	p.E1240in_frame_del	1.000:0.997:1.000	smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				72	0	0	39	6	13.3333
PDIA5	0	genome.wustl.edu	37	3	122880697	122880698	+	RNA	DEL	TC	TC	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	122880697	122880698	TC	-	DEL	PDIA5	ENST00000467157	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	PDIA5	HGNC	ENSG00000065485				33	0	0	20	15	42.8571
ADCY5	0	genome.wustl.edu	37	3	123167215	123167215	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	123167215	123167215	C	-	DEL	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	frame_shift_del	c.178	p.A60fs	0.997	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				8	0	0	5	5	50
MYLK	0	genome.wustl.edu	37	3	123385183	123385184	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	123385183	123385184	-	G	INS	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	frame_shift_ins	c.3714_3713	p.Q1239fs	0.988:1.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				69	0	0	48	8	14.2857
FAM86JP	0	genome.wustl.edu	37	3	125648415	125648415	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	125648415	125648415	A	-	DEL	FAM86JP	ENST00000467239	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	FAM86JP	HGNC	ENSG00000171084				50	0	0	31	11	26.1905
ENSG00000273455	0	genome.wustl.edu	37	3	135806703	135806703	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	135806703	135806703	T	-	DEL	ENSG00000273455	ENST00000608883	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-305O4.3	Clone_based_vega_gene	ENSG00000273455				44	0	0	23	20	46.5116
CNTN6	0	genome.wustl.edu	37	3	1371501	1371501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	1371501	1371501	A	-	DEL	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	frame_shift_del	c.1246	p.K418fs	0.992	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				88	0	0	34	18	34.6154
COPB2	0	genome.wustl.edu	37	3	139088326	139088326	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	139088326	139088326	T	-	DEL	COPB2	ENST00000333188	human	ensembl	74_37	-1	known	frame_shift_del	c.1266	p.K422fs	0.995	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,superfamily_WD40_repeat_dom	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432				58	0	0	23	11	32.3529
EIF2A	0	genome.wustl.edu	37	3	150289746	150289746	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	150289746	150289746	A	-	DEL	EIF2A	ENST00000460851	human	ensembl	74_37	+1	known	frame_shift_del	c.813	p.N273fs	0.958	pfam_TIF_beta_prop-like,pirsf_TIF2A	pfam_TIF_beta_prop-like,pirsf_TIF2A	-	no_errors	EIF2A	HGNC	ENSG00000144895				45	0	0	27	11	28.9474
ANKRD28	0	genome.wustl.edu	37	3	15756165	15756166	+	Splice_Site	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	15756165	15756166	-	G	INS	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	splice_site_ins	c.1006-3_1006-2	e9-2	1.000:0.998	-	-	-	no_errors	ANKRD28	HGNC	ENSG00000206560				18	0	0	16	6	27.2727
SHOX2	0	genome.wustl.edu	37	3	157823865	157823865	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	157823865	157823865	T	-	DEL	SHOX2	ENST00000554685	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SHOX2	HGNC	ENSG00000168779				53	0	0	24	13	35.1351
ARL14	0	genome.wustl.edu	37	3	160395474	160395474	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	160395474	160395474	A	-	DEL	ARL14	ENST00000320767	human	ensembl	74_37	+1	known	frame_shift_del	c.340	p.N115fs	0.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL14	HGNC	ENSG00000179674				106	0	0	50	7	12.2807
OXNAD1	0	genome.wustl.edu	37	3	16343348	16343348	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	16343348	16343348	A	-	DEL	OXNAD1	ENST00000544043	human	ensembl	74_37	+1	known	frame_shift_del	c.702	p.N236fs	0.128	pfam_OxRdtase_FAD/NAD-bd,pfam_Fe_red_NAD-bd_6	pfam_OxRdtase_FAD/NAD-bd,pfam_Fe_red_NAD-bd_6,superfamily_Riboflavin_synthase-like_b-brl,prints_Phe_hydroxylase,prints_NADH-Cyt_B5_reductase	-	no_errors	OXNAD1	HGNC	ENSG00000154814				73	0	0	39	15	27.7778
B3GNT5	0	genome.wustl.edu	37	3	182987617	182987617	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	182987617	182987617	A	-	DEL	B3GNT5	ENST00000326505	human	ensembl	74_37	+1	known	frame_shift_del	c.31	p.K12fs	0.985	NULL	pfam_Glyco_trans_31,superfamily_Luciferase-like_dom	-	no_errors	B3GNT5	HGNC	ENSG00000176597				140	0	0	99	11	10
CHRD	0	genome.wustl.edu	37	3	184100472	184100472	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	184100472	184100472	G	-	DEL	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	frame_shift_del	c.892	p.G299fs	0.999	pfam_CHRD,smart_CHRD,pirsf_Chordin,pfscan_CHRD	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539				152	0	0	94	20	17.5439
TMEM41A	0	genome.wustl.edu	37	3	185212517	185212518	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	185212517	185212518	-	A	INS	TMEM41A	ENST00000421852	human	ensembl	74_37	-1	known	frame_shift_ins	c.468_467	p.L158fs	0.999:1.000	pfam_SNARE_assoc	pfam_SNARE_assoc	-	no_errors	TMEM41A	HGNC	ENSG00000163900				165	1	0.60241	125	31	19.8718
DGKG	0	genome.wustl.edu	37	3	185975717	185975717	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	185975717	185975717	A	-	DEL	DGKG	ENST00000265022	human	ensembl	74_37	-1	known	frame_shift_del	c.1436	p.F479fs	1.000	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866				75	0	0	53	28	34.5679
LSG1	0	genome.wustl.edu	37	3	194362829	194362829	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	194362829	194362829	T	-	DEL	LSG1	ENST00000265245	human	ensembl	74_37	-1	known	frame_shift_del	c.1945	p.S649fs	1.000	NULL	pfam_GTP_binding_domain,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	LSG1	HGNC	ENSG00000041802				173	0	0	81	33	28.9474
XXYLT1	0	genome.wustl.edu	37	3	194790780	194790780	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	194790780	194790780	G	-	DEL	XXYLT1	ENST00000310380	human	ensembl	74_37	-1	known	frame_shift_del	c.846	p.E283fs	0.298	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	XXYLT1	HGNC	ENSG00000173950				112	0	0	42	25	37.3134
SLC51A	0	genome.wustl.edu	37	3	195955038	195955038	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	195955038	195955038	G	-	DEL	SLC51A	ENST00000296327	human	ensembl	74_37	+1	known	frame_shift_del	c.415	p.K141fs	1.000	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	SLC51A	HGNC	ENSG00000163959				295	0	0	221	12	5.15021
ENSG00000232783	0	genome.wustl.edu	37	3	197838274	197838276	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	197838274	197838276	AAA	-	DEL	ENSG00000232783	ENST00000411596	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001:0.001	-	-	-	no_errors	AC073135.3	Clone_based_vega_gene	ENSG00000232783				31	0	0	13	7	35
HMGB1P5	0	genome.wustl.edu	37	3	22424027	22424027	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	22424027	22424027	A	-	DEL	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967				36	0	0	32	8	20
STT3B	0	genome.wustl.edu	37	3	31574592	31574593	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	31574592	31574593	-	G	INS	STT3B	ENST00000295770	human	ensembl	74_37	+1	known	frame_shift_ins	c.102_103	p.P35fs	0.994:1.000	NULL	pfam_Oligo_trans_STT3	-	no_errors	STT3B	HGNC	ENSG00000163527				13	0	0	8	4	33.3333
HSPD1P6	0	genome.wustl.edu	37	3	36810381	36810381	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	36810381	36810381	T	-	DEL	HSPD1P6	ENST00000424886	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	HSPD1P6	HGNC	ENSG00000230067				10	0	0	5	4	44.4444
MYD88	0	genome.wustl.edu	37	3	38180225	38180226	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	38180225	38180226	-	C	INS	MYD88	ENST00000417037	human	ensembl	74_37	+1	known	frame_shift_ins	c.73_74	p.V27fs	0.000:0.006	superfamily_DEATH-like_dom,pirsf_Myelin_different_resp_MyD88	pfam_TIR_dom,pfam_Death_domain,superfamily_DEATH-like_dom,superfamily_TIR_dom,smart_Death_domain,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_Death_domain,pfscan_TIR_dom	-	no_errors	MYD88	HGNC	ENSG00000172936				49	0	0	46	16	25.8065
SCN11A	0	genome.wustl.edu	37	3	38949441	38949441	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	38949441	38949441	T	-	DEL	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	frame_shift_del	c.1472	p.K491fs	0.352	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				98	0	0	23	15	39.4737
NKTR	0	genome.wustl.edu	37	3	42679036	42679036	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	42679036	42679036	C	-	DEL	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	frame_shift_del	c.1840	p.P616fs	1.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				236	0	0	144	47	24.6073
NKTR	0	genome.wustl.edu	37	3	42679764	42679764	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	42679764	42679764	A	-	DEL	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	frame_shift_del	c.2568	p.R859fs	0.071	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				86	0	0	52	24	31.5789
CCR5	0	genome.wustl.edu	37	3	46414455	46414455	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	46414455	46414455	A	-	DEL	CCR5	ENST00000292303	human	ensembl	74_37	+1	known	frame_shift_del	c.62	p.I23fs	0.355	prints_Chemokine_rcpt,prints_Chemokine_CCR5	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_rcpt,prints_GPCR_Rhodpsn,prints_Chemokine_CCR5,prints_Chemokine_CCR1,prints_ATII_rcpt	-	no_errors	CCR5	HGNC	ENSG00000160791				221	0	0	101	45	30.8219
COL7A1	0	genome.wustl.edu	37	3	48612871	48612871	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	48612871	48612871	G	-	DEL	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	frame_shift_del	c.6081	p.P2029fs	0.981	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				36	0	0	25	6	19.3548
SLC26A6	0	genome.wustl.edu	37	3	48666129	48666129	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	48666129	48666129	C	-	DEL	SLC26A6	ENST00000395550	human	ensembl	74_37	-1	known	frame_shift_del	c.1618	p.V540fs	0.967	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A6	HGNC	ENSG00000225697				56	0	0	35	19	35.1852
USP19	0	genome.wustl.edu	37	3	49155555	49155556	+	Splice_Site	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49155555	49155556	-	A	INS	USP19	ENST00000398888	human	ensembl	74_37	-1	known	splice_site_ins	c.125-3_125-2	e2-2	0.785:0.775	-	-	-	no_errors	USP19	HGNC	ENSG00000172046				11	0	0	12	4	25
AMT	0	genome.wustl.edu	37	3	49457336	49457336	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49457336	49457336	A	-	DEL	AMT	ENST00000480957	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AMT	HGNC	ENSG00000145020				43	0	0	20	9	31.0345
DAG1	0	genome.wustl.edu	37	3	49547840	49547840	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	49547840	49547840	T	-	DEL	DAG1	ENST00000479935	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.793	-	-	-	no_errors	DAG1	HGNC	ENSG00000173402				23	0	0	17	6	26.087
SLC38A3	0	genome.wustl.edu	37	3	50251692	50251692	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	50251692	50251692	G	-	DEL	SLC38A3	ENST00000414604	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	SLC38A3	HGNC	ENSG00000188338				56	0	0	48	5	9.43396
DOCK3	0	genome.wustl.edu	37	3	51417604	51417605	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	51417604	51417605	CC	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549_5550	p.P1852fs	0.115:0.081	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				52	0	0	40	21	34.4262
NEK4	0	genome.wustl.edu	37	3	52794938	52794938	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	52794938	52794938	T	-	DEL	NEK4	ENST00000233027	human	ensembl	74_37	-1	known	frame_shift_del	c.836	p.N279fs	0.409	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK4	HGNC	ENSG00000114904				115	0	0	47	37	44.0476
APPL1	0	genome.wustl.edu	37	3	57271572	57271572	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	57271572	57271572	A	-	DEL	APPL1	ENST00000288266	human	ensembl	74_37	+1	known	frame_shift_del	c.206	p.K70fs	1.000	NULL	pfam_PTB/PI_dom,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom	-	no_errors	APPL1	HGNC	ENSG00000157500				26	0	0	9	4	30.7692
FLNB	0	genome.wustl.edu	37	3	58089788	58089788	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	58089788	58089788	G	-	DEL	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	frame_shift_del	c.1586	p.G531fs	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				80	0	0	61	23	27.381
ATXN7	0	genome.wustl.edu	37	3	63981832	63981832	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	63981832	63981832	C	-	DEL	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	frame_shift_del	c.2334	p.T781fs	0.705	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				114	0	0	43	26	37.6812
SSUH2	0	genome.wustl.edu	37	3	8667234	8667235	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	8667234	8667235	-	T	INS	SSUH2	ENST00000544814	human	ensembl	74_37	-1	known	frame_shift_ins	c.867_866	p.N289fs	0.032:0.046	NULL	superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	SSUH2	HGNC	ENSG00000125046				64	0	0	30	12	28.5714
HTR1F	0	genome.wustl.edu	37	3	88040889	88040889	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	88040889	88040889	T	-	DEL	HTR1F	ENST00000319595	human	ensembl	74_37	+1	known	frame_shift_del	c.990	p.L332fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_5HT1F_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HTR1F	HGNC	ENSG00000179097				60	0	0	16	18	52.9412
NSUN3	0	genome.wustl.edu	37	3	93783344	93783345	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	93783344	93783345	-	A	INS	NSUN3	ENST00000314622	human	ensembl	74_37	+1	known	frame_shift_ins	c.76_77	p.Q28fs	1.000:0.999	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN3	HGNC	ENSG00000178694				48	0	0	32	10	23.8095
COL8A1	0	genome.wustl.edu	37	3	99514822	99514822	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	99514822	99514822	A	-	DEL	COL8A1	ENST00000261037	human	ensembl	74_37	+1	known	frame_shift_del	c.2077	p.K694fs	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810				89	0	0	62	15	19.4805
IL17RC	0	genome.wustl.edu	37	3	9958948	9958948	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	3	9958948	9958948	G	-	DEL	IL17RC	ENST00000498214	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IL17RC	HGNC	ENSG00000163702				18	0	0	9	6	40
CFI	0	genome.wustl.edu	37	4	110682806	110682807	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	110682806	110682807	AG	-	DEL	CFI	ENST00000394634	human	ensembl	74_37	-1	known	frame_shift_del	c.525_524	p.S175fs	0.000:0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_FacI_MAC,smart_Srcr_rcpt-rel,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	CFI	HGNC	ENSG00000205403				118	0	0	62	27	30.3371
LARP7	0	genome.wustl.edu	37	4	113570754	113570754	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	113570754	113570754	A	-	DEL	LARP7	ENST00000324052	human	ensembl	74_37	+1	known	frame_shift_del	c.1206	p.T405fs	1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720				26	0	0	9	7	43.75
SCLT1	0	genome.wustl.edu	37	4	129869675	129869675	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	129869675	129869675	T	-	DEL	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	frame_shift_del	c.1269	p.A424fs	1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				54	0	0	25	12	32.4324
ZNF330	0	genome.wustl.edu	37	4	142143532	142143532	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	142143532	142143532	A	-	DEL	ZNF330	ENST00000262990	human	ensembl	74_37	+1	known	frame_shift_del	c.7	p.K5fs	1.000	pfam_NOA36	pfam_NOA36	-	no_errors	ZNF330	HGNC	ENSG00000109445				36	0	0	16	9	36
HHIP	0	genome.wustl.edu	37	4	145567955	145567956	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	145567955	145567956	-	C	INS	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	frame_shift_ins	c.128_129	p.K46fs	1.000:1.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161				98	0	0	55	22	28.5714
SORBS2	0	genome.wustl.edu	37	4	186510856	186510856	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	186510856	186510856	T	-	DEL	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	frame_shift_del	c.3218	p.K1073fs	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556				138	0	0	80	48	37.5
GPR125	0	genome.wustl.edu	37	4	22415458	22415458	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	22415458	22415458	A	-	DEL	GPR125	ENST00000506155	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPR125	HGNC	ENSG00000152990				20	0	0	19	6	24
RBPJ	0	genome.wustl.edu	37	4	26321499	26321499	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	26321499	26321499	G	-	DEL	RBPJ	ENST00000345843	human	ensembl	74_37	+1	known	frame_shift_del	c.3	p.G3fs	0.000	NULL	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,pfam_IPT,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJ	HGNC	ENSG00000168214				48	0	0	22	11	33.3333
GRK4	0	genome.wustl.edu	37	4	2986250	2986251	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	2986250	2986251	-	A	INS	GRK4	ENST00000398052	human	ensembl	74_37	+1	known	frame_shift_ins	c.63_64	p.S23fs	0.978:0.983	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK4	HGNC	ENSG00000125388				61	0	0	51	9	15
RGS12	0	genome.wustl.edu	37	4	3432431	3432431	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	3432431	3432431	C	-	DEL	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	frame_shift_del	c.3863	p.1292fs	0.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				28	0	0	7	13	65
HGFAC	0	genome.wustl.edu	37	4	3450973	3450973	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	3450973	3450973	G	-	DEL	HGFAC	ENST00000382774	human	ensembl	74_37	+1	known	frame_shift_del	c.1795	p.L602fs	0.999	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EG-like_dom,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGFAC	HGNC	ENSG00000109758				118	0	0	102	7	6.42202
TLR10	0	genome.wustl.edu	37	4	38774956	38774956	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	38774956	38774956	T	-	DEL	TLR10	ENST00000308973	human	ensembl	74_37	-1	known	frame_shift_del	c.2256	p.A753fs	0.718	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123				83	0	0	38	10	20.8333
GUF1	0	genome.wustl.edu	37	4	44680574	44680574	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	44680574	44680574	A	-	DEL	GUF1	ENST00000506793	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GUF1	HGNC	ENSG00000151806				9	0	0	7	3	30
FRYL	0	genome.wustl.edu	37	4	48566025	48566025	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	48566025	48566025	G	-	DEL	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	frame_shift_del	c.3536	p.T1179fs	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				105	0	0	66	7	9.58904
AASDH	0	genome.wustl.edu	37	4	57244505	57244505	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	57244505	57244505	T	-	DEL	AASDH	ENST00000205214	human	ensembl	74_37	-1	known	frame_shift_del	c.477	p.E160fs	0.802	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426				46	0	0	21	19	47.5
C4orf26	0	genome.wustl.edu	37	4	76489680	76489681	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	76489680	76489681	AA	-	DEL	C4orf26	ENST00000435974	human	ensembl	74_37	+1	putative	frame_shift_del	c.468_469	p.S159fs	0.001:0.000	NULL	NULL	-	no_errors	C4orf26	HGNC	ENSG00000174792				108	0	0	73	28	27.7228
ANTXR2	0	genome.wustl.edu	37	4	80905990	80905990	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	80905990	80905990	C	-	DEL	ANTXR2	ENST00000307333	human	ensembl	74_37	-1	known	frame_shift_del	c.1069	p.A357fs	0.559	pirsf_Anthrax_toxin_rcpt	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_C,pfam_Anthrax_toxin_rcpt_extracel,pfam_VWF_A,superfamily_Ig_E-set,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR2	HGNC	ENSG00000163297				18	0	0	8	4	33.3333
HNRNPD	0	genome.wustl.edu	37	4	83276431	83276431	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	83276431	83276431	A	-	DEL	HNRNPD	ENST00000508119	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HNRNPD	HGNC	ENSG00000138668				23	0	0	9	5	35.7143
SEC31A	0	genome.wustl.edu	37	4	83763593	83763594	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	83763593	83763594	-	C	INS	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	frame_shift_ins	c.2668_2667	p.S889fs	0.852:0.901	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674				25	0	0	11	6	35.2941
SEC31A	0	genome.wustl.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	83785565	83785565	T	-	DEL	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	frame_shift_del	c.1384	p.I462fs	0.985	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674				77	0	0	38	16	29.6296
THAP9	0	genome.wustl.edu	37	4	83838351	83838351	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	83838351	83838351	T	-	DEL	THAP9	ENST00000302236	human	ensembl	74_37	+1	known	frame_shift_del	c.986	p.F330fs	0.878	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152				192	0	0	95	6	5.94059
CDS1	0	genome.wustl.edu	37	4	85525494	85525495	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	85525494	85525495	-	A	INS	CDS1	ENST00000295887	human	ensembl	74_37	+1	known	frame_shift_ins	c.216_217	p.A74fs	1.000:1.000	pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624				119	0	0	42	24	36.3636
WDFY3	0	genome.wustl.edu	37	4	85676453	85676453	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	85676453	85676453	A	-	DEL	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	frame_shift_del	c.5525	p.L1842fs	0.996	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				93	0	0	48	14	22.5806
HERC5	0	genome.wustl.edu	37	4	89407334	89407334	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	89407334	89407334	T	-	DEL	HERC5	ENST00000264350	human	ensembl	74_37	+1	known	frame_shift_del	c.1806	p.F604fs	0.938	NULL	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646				156	1	0.636943	61	25	29.0698
UNC5C	0	genome.wustl.edu	37	4	96140294	96140294	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	4	96140294	96140294	G	-	DEL	UNC5C	ENST00000453304	human	ensembl	74_37	-1	known	frame_shift_del	c.1471	p.Q491fs	0.999	NULL	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5C	HGNC	ENSG00000182168				262	0	0	151	67	30.7339
DMXL1	0	genome.wustl.edu	37	5	118480239	118480239	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	118480239	118480239	A	-	DEL	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	frame_shift_del	c.2475	p.T827fs	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				164	0	0	72	23	24.2105
ADAMTS19	0	genome.wustl.edu	37	5	129030453	129030454	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	129030453	129030454	-	A	INS	ADAMTS19	ENST00000274487	human	ensembl	74_37	+1	known	frame_shift_ins	c.2841_2842	p.N948fs	1.000:1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_PLAC,pfam_Pept_M10_metallopeptidase,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS19	HGNC	ENSG00000145808				98	0	0	54	26	32.5
CLPTM1L	0	genome.wustl.edu	37	5	1331940	1331941	+	In_Frame_Ins	INS	-	-	TCT			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	1331940	1331941	-	TCT	INS	CLPTM1L	ENST00000320895	human	ensembl	74_37	-1	known	in_frame_ins	c.950_949	p.317in_frame_insK	1.000:1.000	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656				60	0	0	44	11	20
MATR3	0	genome.wustl.edu	37	5	138643543	138643545	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	138643543	138643545	AGG	-	DEL	MATR3	ENST00000361059	human	ensembl	74_37	+1	known	in_frame_del	c.439_441	p.R149in_frame_del	1.000:1.000:1.000	NULL	smart_Znf_U1,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	MATR3	HGNC	ENSG00000015479				86	0	0	40	18	31.0345
TMEM173	0	genome.wustl.edu	37	5	138857068	138857068	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	138857068	138857068	G	-	DEL	TMEM173	ENST00000330794	human	ensembl	74_37	-1	known	frame_shift_del	c.792	p.L265fs	0.110	NULL	NULL	-	no_errors	TMEM173	HGNC	ENSG00000184584				119	0	0	53	29	35.3659
WDR55	0	genome.wustl.edu	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140049102	140049102	A	-	DEL	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	1.000	pirsf_WD_repeat_p55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314				34	0	0	33	21	38.8889
PCDHB4	0	genome.wustl.edu	37	5	140502487	140502487	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140502487	140502487	A	-	DEL	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	frame_shift_del	c.907	p.K305fs	0.078	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818				191	0	0	154	25	13.9665
PCDHGB1	0	genome.wustl.edu	37	5	140730922	140730922	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140730922	140730922	A	-	DEL	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	frame_shift_del	c.1095	p.V367fs	0.922	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221				29	0	0	15	9	37.5
PCDHGC5	0	genome.wustl.edu	37	5	140868884	140868884	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	140868884	140868884	G	-	DEL	PCDHGC5	ENST00000252087	human	ensembl	74_37	+1	known	frame_shift_del	c.77	p.V27fs	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC5	HGNC	ENSG00000240764				60	0	0	74	7	8.64198
TRIO	0	genome.wustl.edu	37	5	14387627	14387627	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	14387627	14387627	A	-	DEL	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	frame_shift_del	c.3651	p.K1219fs	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				160	0	0	94	9	8.73786
RBM27	0	genome.wustl.edu	37	5	145647320	145647320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	145647320	145647320	A	-	DEL	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	frame_shift_del	c.2440	p.K816fs	1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				106	0	0	40	14	25.9259
TCERG1	0	genome.wustl.edu	37	5	145886723	145886723	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	145886723	145886723	A	-	DEL	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	frame_shift_del	c.2863	p.K957fs	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				131	1	0.757576	50	35	41.1765
C5orf54	0	genome.wustl.edu	37	5	159822094	159822094	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	159822094	159822094	T	-	DEL	C5orf54	ENST00000408953	human	ensembl	74_37	-1	known	frame_shift_del	c.404	p.K135fs	1.000	NULL	superfamily_RNaseH-like_dom	-	no_errors	C5orf54	HGNC	ENSG00000221886				123	0	0	68	6	8.10811
TENM2	0	genome.wustl.edu	37	5	167553862	167553862	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	167553862	167553862	C	-	DEL	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	frame_shift_del	c.2313	p.R773fs	1.000	pfam_EGF_extracell,smart_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				17	0	0	18	12	40
FOXI1	0	genome.wustl.edu	37	5	169533034	169533034	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	169533034	169533034	C	-	DEL	FOXI1	ENST00000306268	human	ensembl	74_37	+1	known	frame_shift_del	c.73	p.E27fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXI1	HGNC	ENSG00000168269				51	0	0	29	16	35.5556
SH3PXD2B	0	genome.wustl.edu	37	5	171766334	171766334	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	171766334	171766334	T	-	DEL	SH3PXD2B	ENST00000311601	human	ensembl	74_37	-1	known	frame_shift_del	c.1775	p.N592fs	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705				124	0	0	81	40	33.0579
GPRIN1	0	genome.wustl.edu	37	5	176026665	176026665	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	176026665	176026665	G	-	DEL	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	frame_shift_del	c.171	p.R58fs	0.001	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258				157	0	0	91	21	18.75
FAM193B	0	genome.wustl.edu	37	5	176951522	176951522	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	176951522	176951522	G	-	DEL	FAM193B	ENST00000443375	human	ensembl	74_37	-1	known	frame_shift_del	c.1861	p.R621fs	0.000	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067				53	0	0	23	11	32.3529
HNRNPH1	0	genome.wustl.edu	37	5	179044644	179044644	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	179044644	179044644	A	-	DEL	HNRNPH1	ENST00000356731	human	ensembl	74_37	-1	known	frame_shift_del	c.928	p.S310fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH1	HGNC	ENSG00000169045				116	0	0	69	27	28.125
BTNL8	0	genome.wustl.edu	37	5	180374579	180374580	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	180374579	180374580	-	T	INS	BTNL8	ENST00000340184	human	ensembl	74_37	+1	known	frame_shift_ins	c.741_742	p.G249fs	0.000:0.000	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTNL8	HGNC	ENSG00000113303				396	1	0.251889	159	92	36.6534
TRIM7	0	genome.wustl.edu	37	5	180630563	180630565	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	180630563	180630565	CTT	-	DEL	TRIM7	ENST00000274773	human	ensembl	74_37	-1	known	in_frame_del	c.600_598	p.K200in_frame_del	1.000:1.000:1.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM7	HGNC	ENSG00000146054				123	0	0	69	29	29.5918
CDH18	0	genome.wustl.edu	37	5	19473809	19473809	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	19473809	19473809	A	-	DEL	CDH18	ENST00000274170	human	ensembl	74_37	-1	known	frame_shift_del	c.1899	p.F633fs	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH18	HGNC	ENSG00000145526				242	0	0	152	81	34.7639
PDZD2	0	genome.wustl.edu	37	5	31799656	31799657	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	31799656	31799657	-	G	INS	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	frame_shift_ins	c.301_302	p.K104fs	1.000:1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				140	0	0	98	14	12.5
SLC1A3	0	genome.wustl.edu	37	5	36679798	36679799	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	36679798	36679799	-	G	INS	SLC1A3	ENST00000265113	human	ensembl	74_37	+1	known	frame_shift_ins	c.930_931	p.Q312fs	0.959:1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215				258	0	0	181	18	9.04523
NIPBL	0	genome.wustl.edu	37	5	36995693	36995693	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	36995693	36995693	T	-	DEL	NIPBL	ENST00000503274	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.879	-	-	-	no_errors	NIPBL	HGNC	ENSG00000164190				52	0	0	21	11	34.375
FYB	0	genome.wustl.edu	37	5	39203040	39203040	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	39203040	39203040	C	-	DEL	FYB	ENST00000540520	human	ensembl	74_37	-1	known	frame_shift_del	c.53	p.G18fs	0.999	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074				119	0	0	51	20	28.169
GPX8	0	genome.wustl.edu	37	5	54460113	54460113	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	54460113	54460113	T	-	DEL	GPX8	ENST00000506123	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPX8	HGNC	ENSG00000164294				16	0	0	9	5	35.7143
SLC38A9	0	genome.wustl.edu	37	5	54941671	54941671	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	54941671	54941671	A	-	DEL	SLC38A9	ENST00000318672	human	ensembl	74_37	-1	known	frame_shift_del	c.1113	p.F371fs	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A9	HGNC	ENSG00000177058				60	0	0	39	15	27.7778
ERCC8	0	genome.wustl.edu	37	5	60187968	60187968	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	60187968	60187968	T	-	DEL	ERCC8	ENST00000462279	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ERCC8	HGNC	ENSG00000049167				24	0	0	11	10	47.619
PPWD1	0	genome.wustl.edu	37	5	64865507	64865508	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	64865507	64865508	-	A	INS	PPWD1	ENST00000261308	human	ensembl	74_37	+1	known	frame_shift_ins	c.348_349	p.I118fs	1.000:1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_WD40_repeat,superfamily_Cyclophilin-like_PPIase_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PPWD1	HGNC	ENSG00000113593				76	0	0	37	14	27.451
NSUN2	0	genome.wustl.edu	37	5	6620235	6620236	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	6620235	6620236	AT	-	DEL	NSUN2	ENST00000264670	human	ensembl	74_37	-1	known	frame_shift_del	c.799_798	p.C267fs	0.996:0.001	pfam_Fmu/NOL1/Nop2p,prints_RCMT	pfam_Fmu/NOL1/Nop2p,prints_RCMT,prints_RCMT_NCL1	-	no_errors	NSUN2	HGNC	ENSG00000037474				111	0	0	58	31	34.8315
MAST4	0	genome.wustl.edu	37	5	66462833	66462833	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	66462833	66462833	G	-	DEL	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	frame_shift_del	c.7835	p.E2615fs	1.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				25	0	0	30	6	16.6667
CCDC125	0	genome.wustl.edu	37	5	68609711	68609712	+	RNA	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	68609711	68609712	-	A	INS	CCDC125	ENST00000513172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004:0.001	-	-	-	no_errors	CCDC125	HGNC	ENSG00000183323				91	0	0	34	26	43.3333
BDP1	0	genome.wustl.edu	37	5	70837318	70837319	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	70837318	70837319	-	A	INS	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	frame_shift_ins	c.6060_6061	p.S2021fs	0.016:0.028	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				130	0	0	42	20	32.2581
ZNF366	0	genome.wustl.edu	37	5	71743139	71743139	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	71743139	71743139	G	-	DEL	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	frame_shift_del	c.1630	p.L544fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				125	0	0	57	25	30.4878
POLK	0	genome.wustl.edu	37	5	74893608	74893609	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	74893608	74893609	-	A	INS	POLK	ENST00000241436	human	ensembl	74_37	+1	known	frame_shift_ins	c.2522_2523	p.R843fs	0.987:0.992	NULL	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_PolY_HhH_motif,superfamily_DNA_pol_Y-fam_little_finger,smart_Znf_Rad18_put,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLK	HGNC	ENSG00000122008				100	0	0	32	18	36
TBCA	0	genome.wustl.edu	37	5	76989051	76989052	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	76989051	76989052	AA	-	DEL	TBCA	ENST00000306388	human	ensembl	74_37	-1	putative	frame_shift_del	c.286_285	p.S96fs	0.176:0.181	NULL	pfam_CofA_tubulin-bd,superfamily_CofA_tubulin-bd	-	no_errors	TBCA	HGNC	ENSG00000171530				30	0	0	8	6	42.8571
AP3B1	0	genome.wustl.edu	37	5	77334907	77334907	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	77334907	77334907	T	-	DEL	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	frame_shift_del	c.2769	p.K923fs	0.419	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				55	0	0	29	4	12.1212
CKMT2-AS1	0	genome.wustl.edu	37	5	80515512	80515513	+	RNA	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	80515512	80515513	-	T	INS	CKMT2-AS1	ENST00000503483	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	CKMT2-AS1	HGNC	ENSG00000247572				41	0	0	30	7	18.9189
VCAN	0	genome.wustl.edu	37	5	82832816	82832816	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	82832816	82832816	T	-	DEL	VCAN	ENST00000513016	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	VCAN	HGNC	ENSG00000038427				42	0	0	17	10	37.037
LYSMD3	0	genome.wustl.edu	37	5	89815219	89815219	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	5	89815219	89815219	T	-	DEL	LYSMD3	ENST00000315948	human	ensembl	74_37	-1	known	frame_shift_del	c.338	p.K113fs	0.999	NULL	pfam_LysM_dom,smart_LysM_dom	-	no_errors	LYSMD3	HGNC	ENSG00000176018				93	0	0	35	19	35.1852
GRIK2	0	genome.wustl.edu	37	6	102503431	102503432	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	102503431	102503432	-	A	INS	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	frame_shift_ins	c.2538_2539	p.N848fs	1.000:1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				151	0	0	103	11	9.64912
BEND3	0	genome.wustl.edu	37	6	107391602	107391602	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	107391602	107391602	C	-	DEL	BEND3	ENST00000369042	human	ensembl	74_37	-1	known	frame_shift_del	c.793	p.D265fs	1.000	pfam_BEN_domain	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409				43	0	0	38	19	33.3333
TMEM14B	0	genome.wustl.edu	37	6	10756864	10756864	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	10756864	10756864	A	-	DEL	TMEM14B	ENST00000486421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210				13	0	0	5	3	37.5
SCML4	0	genome.wustl.edu	37	6	108076791	108076791	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	108076791	108076791	G	-	DEL	SCML4	ENST00000369021	human	ensembl	74_37	-1	known	frame_shift_del	c.53	p.P18fs	0.000	NULL	pfam_DUF3588	-	no_errors	SCML4	HGNC	ENSG00000146285				85	0	0	38	23	37.7049
NR2E1	0	genome.wustl.edu	37	6	108508598	108508599	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	108508598	108508599	-	A	INS	NR2E1	ENST00000368986	human	ensembl	74_37	+1	known	frame_shift_ins	c.1089_1090	p.T365fs	1.000:1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR2E1	HGNC	ENSG00000112333				195	0	0	95	25	20.8333
REV3L	0	genome.wustl.edu	37	6	111688632	111688632	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	111688632	111688632	G	-	DEL	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	frame_shift_del	c.6359	p.P2120fs	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				230	0	0	90	42	31.8182
WISP3	0	genome.wustl.edu	37	6	112389434	112389435	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	112389434	112389435	AA	-	DEL	WISP3	ENST00000361714	human	ensembl	74_37	+1	known	frame_shift_del	c.670_671	p.K226fs	1.000:1.000	superfamily_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt	-	no_errors	WISP3	HGNC	ENSG00000112761				49	0	0	23	10	30.303
MARCKS	0	genome.wustl.edu	37	6	114181210	114181211	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	114181210	114181211	AA	-	DEL	MARCKS	ENST00000368635	human	ensembl	74_37	+1	known	frame_shift_del	c.454_455	p.K155fs	1.000:1.000	pfam_MARCKS	pfam_MARCKS,prints_MARCKS	-	no_errors	MARCKS	HGNC	ENSG00000155130				28	0	0	11	8	42.1053
RNF217	0	genome.wustl.edu	37	6	125283913	125283913	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	125283913	125283913	C	-	DEL	RNF217	ENST00000521654	human	ensembl	74_37	+1	novel	frame_shift_del	c.223	p.P76fs	0.069	NULL	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373				24	0	0	14	17	54.8387
IL20RA	0	genome.wustl.edu	37	6	137323176	137323176	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	137323176	137323176	G	-	DEL	IL20RA	ENST00000316649	human	ensembl	74_37	-1	known	frame_shift_del	c.1181	p.P394fs	0.000	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL20RA	HGNC	ENSG00000016402				99	0	0	38	14	26.9231
SASH1	0	genome.wustl.edu	37	6	148865778	148865778	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	148865778	148865778	C	-	DEL	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	frame_shift_del	c.3172	p.W1060fs	1.000	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				41	0	0	14	12	46.1538
SYNE1	0	genome.wustl.edu	37	6	152762390	152762391	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	152762390	152762391	-	T	INS	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	frame_shift_ins	c.4024_4023	p.W1341fs	1.000:0.996	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				28	0	0	9	6	40
JARID2	0	genome.wustl.edu	37	6	15496635	15496636	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	15496635	15496636	-	G	INS	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	frame_shift_ins	c.1179_1180	p.A395fs	1.000:1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				152	0	0	140	30	17.6471
SCAF8	0	genome.wustl.edu	37	6	155145472	155145472	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	155145472	155145472	T	-	DEL	SCAF8	ENST00000367186	human	ensembl	74_37	+1	known	frame_shift_del	c.2229	p.L745fs	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079				224	0	0	91	35	27.7778
SYNJ2	0	genome.wustl.edu	37	6	158508009	158508009	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	158508009	158508009	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.3331	p.P1113fs	1.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				72	0	0	33	20	37.7358
OSTCP1	0	genome.wustl.edu	37	6	159262512	159262512	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	159262512	159262512	A	-	DEL	OSTCP1	ENST00000522287	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	OSTCP1	HGNC	ENSG00000243775				8	0	0	2	3	60
WTAP	0	genome.wustl.edu	37	6	160157348	160157348	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	160157348	160157348	T	-	DEL	WTAP	ENST00000494513	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WTAP	HGNC	ENSG00000146457				71	0	0	33	7	17.5
MLLT4	0	genome.wustl.edu	37	6	168370555	168370556	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	168370555	168370556	-	A	INS	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	frame_shift_ins	c.5415_5416	p.N1805fs	0.972:0.976	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396				44	0	0	18	8	30.7692
THBS2	0	genome.wustl.edu	37	6	169648522	169648523	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	169648522	169648523	CT	-	DEL	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	frame_shift_del	c.599_598	p.H201fs	0.953:0.970	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340				233	0	0	148	79	34.8018
RBM24	0	genome.wustl.edu	37	6	17292449	17292450	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	17292449	17292450	AA	-	DEL	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.915:0.719	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				37	0	0	10	20	66.6667
SLC17A3	0	genome.wustl.edu	37	6	25861923	25861923	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	25861923	25861923	C	-	DEL	SLC17A3	ENST00000397060	human	ensembl	74_37	-1	known	frame_shift_del	c.554	p.G185fs	0.960	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A3	HGNC	ENSG00000124564				123	0	0	69	14	16.8675
BTN2A2	0	genome.wustl.edu	37	6	26390383	26390383	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	26390383	26390383	A	-	DEL	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	frame_shift_del	c.875	p.K294fs	0.000	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508				89	0	0	32	25	43.8596
NKAPL	0	genome.wustl.edu	37	6	28227519	28227520	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	28227519	28227520	GA	-	DEL	NKAPL	ENST00000343684	human	ensembl	74_37	+1	known	frame_shift_del	c.370_371	p.R127fs	0.996:1.000	NULL	pfam_DUF926	-	no_errors	NKAPL	HGNC	ENSG00000189134				178	1	0.558659	130	62	32.2917
GPX5	0	genome.wustl.edu	37	6	28502011	28502011	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	28502011	28502011	A	-	DEL	GPX5	ENST00000442674	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPX5	HGNC	ENSG00000224586				22	0	0	11	8	42.1053
MAS1L	0	genome.wustl.edu	37	6	29455056	29455056	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	29455056	29455056	T	-	DEL	MAS1L	ENST00000377127	human	ensembl	74_37	-1	known	frame_shift_del	c.624	p.K208fs	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	MAS1L	HGNC	ENSG00000204687				77	0	0	39	24	38.0952
GABBR1	0	genome.wustl.edu	37	6	29577143	29577144	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	29577143	29577144	-	G	INS	GABBR1	ENST00000377034	human	ensembl	74_37	-1	known	frame_shift_ins	c.1722_1721	p.A575fs	0.997:1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Peripla_BP_I,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681				61	0	0	52	6	10.3448
PPP1R11	0	genome.wustl.edu	37	6	30037057	30037057	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	30037057	30037057	C	-	DEL	PPP1R11	ENST00000376772	human	ensembl	74_37	+1	known	frame_shift_del	c.355	p.P120fs	1.000	NULL	pfam_PPI_Ypi1	-	no_errors	PPP1R11	HGNC	ENSG00000204619				127	0	0	118	9	7.08661
MDC1	0	genome.wustl.edu	37	6	30681463	30681463	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	30681463	30681463	T	-	DEL	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	frame_shift_del	c.549	p.K183fs	0.166	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				61	0	0	25	18	41.8605
ABHD16A	0	genome.wustl.edu	37	6	31657478	31657478	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	31657478	31657478	C	-	DEL	ABHD16A	ENST00000395952	human	ensembl	74_37	-1	known	frame_shift_del	c.961	p.V321fs	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1	-	no_errors	ABHD16A	HGNC	ENSG00000204427				42	0	0	34	6	15
NELFE	0	genome.wustl.edu	37	6	31926206	31926206	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	31926206	31926206	G	-	DEL	NELFE	ENST00000375429	human	ensembl	74_37	-1	known	frame_shift_del	c.18	p.G7fs	0.996	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NELFE	HGNC	ENSG00000204356				119	1	0.833333	85	29	25.4386
TNXB	0	genome.wustl.edu	37	6	32057080	32057080	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	32057080	32057080	G	-	DEL	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	frame_shift_del	c.2435	p.P812fs	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				33	0	0	15	13	46.4286
COL11A2	0	genome.wustl.edu	37	6	33152075	33152075	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	33152075	33152075	G	-	DEL	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	frame_shift_del	c.966	p.T323fs	0.989	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				75	0	0	41	21	33.871
VPS52	0	genome.wustl.edu	37	6	33219710	33219711	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	33219710	33219711	-	C	INS	VPS52	ENST00000445902	human	ensembl	74_37	-1	known	frame_shift_ins	c.1833_1832	p.L612fs	0.981:1.000	NULL	pfam_Vps52,pfam_Exocyst_Exoc1/SEC3	-	no_errors	VPS52	HGNC	ENSG00000223501				74	0	0	45	26	36.6197
TAPBP	0	genome.wustl.edu	37	6	33272175	33272175	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	33272175	33272175	G	-	DEL	TAPBP	ENST00000426633	human	ensembl	74_37	-1	known	frame_shift_del	c.1109	p.P370fs	0.060	pfam_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,pfscan_Ig-like_dom,prints_Tapasin	-	no_errors	TAPBP	HGNC	ENSG00000231925				78	0	0	59	35	37.234
FKBP5	0	genome.wustl.edu	37	6	35543652	35543655	+	Frame_Shift_Del	DEL	CTGT	CTGT	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CTGT	CTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	35543652	35543655	CTGT	-	DEL	FKBP5	ENST00000357266	human	ensembl	74_37	-1	known	frame_shift_del	c.1334_1331	p.D444fs	0.000:0.000:0.000:0.000	NULL	pfam_PPIase_FKBP_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP5	HGNC	ENSG00000096060				343	0	0	197	18	8.37209
TBC1D22B	0	genome.wustl.edu	37	6	37250063	37250063	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	37250063	37250063	C	-	DEL	TBC1D22B	ENST00000373491	human	ensembl	74_37	+1	known	frame_shift_del	c.524	p.P177fs	0.996	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491				82	0	0	53	21	28.3784
CCND3	0	genome.wustl.edu	37	6	42016369	42016369	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	42016369	42016369	C	-	DEL	CCND3	ENST00000511686	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CCND3	HGNC	ENSG00000112576				30	0	0	17	12	41.3793
CUL9	0	genome.wustl.edu	37	6	43192183	43192184	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	43192183	43192184	-	G	INS	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	frame_shift_ins	c.7554_7555	p.*2518fs	1.000:1.000	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				35	0	0	34	12	26.087
AARS2	0	genome.wustl.edu	37	6	44268860	44268860	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	44268860	44268860	G	-	DEL	AARS2	ENST00000491573	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AARS2	HGNC	ENSG00000124608				55	0	0	37	17	31.4815
AARS2	0	genome.wustl.edu	37	6	44269193	44269193	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	44269193	44269193	C	-	DEL	AARS2	ENST00000244571	human	ensembl	74_37	-1	known	frame_shift_del	c.2607	p.T871fs	0.008	tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608				167	0	0	138	42	23.3333
CDC5L	0	genome.wustl.edu	37	6	44371563	44371563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	44371563	44371563	A	-	DEL	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	frame_shift_del	c.557	p.R188fs	1.000	NULL	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				54	0	0	39	32	45.0704
BEND6	0	genome.wustl.edu	37	6	56846680	56846681	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	56846680	56846681	AG	-	DEL	BEND6	ENST00000370746	human	ensembl	74_37	+1	known	frame_shift_del	c.72_73	p.E25fs	0.998:1.000	NULL	pfam_BEN_domain	-	no_errors	BEND6	HGNC	ENSG00000151917				147	0	0	66	29	30.5263
LMBRD1	0	genome.wustl.edu	37	6	70500277	70500277	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	70500277	70500277	A	-	DEL	LMBRD1	ENST00000370577	human	ensembl	74_37	-1	known	frame_shift_del	c.157	p.S53fs	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216				70	0	0	28	8	22.2222
DDX43	0	genome.wustl.edu	37	6	74117732	74117732	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	74117732	74117732	A	-	DEL	DDX43	ENST00000370336	human	ensembl	74_37	+1	known	frame_shift_del	c.1087	p.G365fs	0.057	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,superfamily_P-loop_NTPase,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX43	HGNC	ENSG00000080007				96	0	0	33	25	43.1034
COL12A1	0	genome.wustl.edu	37	6	75851781	75851781	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	75851781	75851781	C	-	DEL	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	frame_shift_del	c.4924	p.E1642fs	0.276	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				149	0	0	64	34	34.6939
MYO6	0	genome.wustl.edu	37	6	76599858	76599858	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	76599858	76599858	A	-	DEL	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	frame_shift_del	c.2743	p.K917fs	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				87	0	0	58	37	38.9474
DOPEY1	0	genome.wustl.edu	37	6	83877970	83877970	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	83877970	83877970	T	-	DEL	DOPEY1	ENST00000484282	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.728	-	-	-	no_errors	DOPEY1	HGNC	ENSG00000083097				13	0	0	3	4	57.1429
KIAA1009	0	genome.wustl.edu	37	6	84896233	84896233	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	84896233	84896233	A	-	DEL	KIAA1009	ENST00000403245	human	ensembl	74_37	-1	known	frame_shift_del	c.1218	p.F406fs	0.000	NULL	NULL	-	no_errors	KIAA1009	HGNC	ENSG00000135315				163	1	0.609756	63	46	42.2018
SYNCRIP	0	genome.wustl.edu	37	6	86324832	86324832	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	86324832	86324832	C	-	DEL	SYNCRIP	ENST00000369622	human	ensembl	74_37	-1	known	frame_shift_del	c.1514	p.G505fs	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316				129	0	0	107	25	18.9394
ZNF292	0	genome.wustl.edu	37	6	87970961	87970961	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	87970961	87970961	T	-	DEL	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	frame_shift_del	c.7614	p.N2538fs	0.220	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				47	0	0	29	14	32.5581
ANKRD6	0	genome.wustl.edu	37	6	90340549	90340549	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	90340549	90340549	T	-	DEL	ANKRD6	ENST00000339746	human	ensembl	74_37	+1	known	frame_shift_del	c.2010	p.F672fs	0.996	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD6	HGNC	ENSG00000135299				33	0	0	40	18	31.0345
CASP8AP2	0	genome.wustl.edu	37	6	90578753	90578754	+	RNA	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	90578753	90578754	-	A	INS	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.997	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				23	0	0	6	6	50
PNISR	0	genome.wustl.edu	37	6	99849343	99849343	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	6	99849343	99849343	T	-	DEL	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	frame_shift_del	c.1491	p.E498fs	1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				53	0	0	20	11	35.4839
MEPCE	0	genome.wustl.edu	37	7	100028068	100028068	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100028068	100028068	G	-	DEL	MEPCE	ENST00000310512	human	ensembl	74_37	+1	known	frame_shift_del	c.427	p.G145fs	0.496	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834				34	0	0	37	6	13.9535
PCOLCE-AS1	0	genome.wustl.edu	37	7	100187479	100187480	+	RNA	DEL	GA	GA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100187479	100187480	GA	-	DEL	PCOLCE-AS1	ENST00000442166	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PCOLCE-AS1	HGNC	ENSG00000224729				29	0	0	29	5	14.7059
FBXO24	0	genome.wustl.edu	37	7	100187651	100187652	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100187651	100187652	-	G	INS	FBXO24	ENST00000427939	human	ensembl	74_37	+1	known	frame_shift_ins	c.205_206	p.K71fs	0.973:0.891	superfamily_F-box_dom	pfam_F-box_dom,pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336				107	0	0	128	13	9.21986
FBXO24	0	genome.wustl.edu	37	7	100192729	100192729	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100192729	100192729	G	-	DEL	FBXO24	ENST00000427939	human	ensembl	74_37	+1	known	frame_shift_del	c.1071	p.G359fs	1.000	superfamily_RCC1/BLIP-II	pfam_F-box_dom,pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336				105	0	0	107	20	15.748
POP7	0	genome.wustl.edu	37	7	100304461	100304461	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100304461	100304461	A	-	DEL	POP7	ENST00000303151	human	ensembl	74_37	+1	known	frame_shift_del	c.8	p.N4fs	0.995	pirsf_RNase_P/MRP_p20	pfam_DNA/RNA-bd_Alba-like,pirsf_RNase_P/MRP_p20	-	no_errors	POP7	HGNC	ENSG00000172336				131	0	0	136	31	18.5629
SLC12A9	0	genome.wustl.edu	37	7	100424587	100424587	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100424587	100424587	G	-	DEL	SLC12A9	ENST00000461016	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.006	-	-	-	no_errors	SLC12A9	HGNC	ENSG00000146828				11	0	0	6	5	45.4545
TRIP6	0	genome.wustl.edu	37	7	100465746	100465746	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	100465746	100465746	G	-	DEL	TRIP6	ENST00000200457	human	ensembl	74_37	+1	known	frame_shift_del	c.254	p.G87fs	0.344	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TRIP6	HGNC	ENSG00000087077				126	0	0	79	15	15.9574
SH2B2	0	genome.wustl.edu	37	7	101957767	101957767	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	101957767	101957767	G	-	DEL	SH2B2	ENST00000536178	human	ensembl	74_37	+1	known	frame_shift_del	c.1411	p.R474fs	0.998	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Phe_ZIP,pfam_Pleckstrin_homology,pfam_SH2,superfamily_Phe_ZIP,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_SH2,prints_SH2	-	no_errors	SH2B2	HGNC	ENSG00000160999				31	0	0	52	9	14.7541
C7orf50	0	genome.wustl.edu	37	7	1037311	1037311	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	1037311	1037311	G	-	DEL	C7orf50	ENST00000357429	human	ensembl	74_37	-1	known	frame_shift_del	c.535	p.L179fs	0.001	NULL	pfam_DUF2373	-	no_errors	C7orf50	HGNC	ENSG00000146540				47	0	0	53	15	22.0588
BCAP29	0	genome.wustl.edu	37	7	107234540	107234540	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	107234540	107234540	T	-	DEL	BCAP29	ENST00000379119	human	ensembl	74_37	+1	known	frame_shift_del	c.334	p.W114fs	1.000	pfam_Bap31	pfam_Bap31	-	no_errors	BCAP29	HGNC	ENSG00000075790				55	0	0	60	10	14.2857
PHF14	0	genome.wustl.edu	37	7	11022426	11022426	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	11022426	11022426	A	-	DEL	PHF14	ENST00000403050	human	ensembl	74_37	+1	known	frame_shift_del	c.540	p.K182fs	0.990	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443				63	0	0	94	13	12.1495
CAPZA2	0	genome.wustl.edu	37	7	116546325	116546326	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	116546325	116546326	-	A	INS	CAPZA2	ENST00000361183	human	ensembl	74_37	+1	known	frame_shift_ins	c.435_436	p.I147fs	1.000:1.000	pfam_CapZ_alpha	pfam_CapZ_alpha,prints_CapZ_alpha	-	no_errors	CAPZA2	HGNC	ENSG00000198898				60	0	0	38	9	19.1489
CFTR	0	genome.wustl.edu	37	7	117234990	117234990	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	117234990	117234990	T	-	DEL	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	frame_shift_del	c.2497	p.F834fs	1.000	superfamily_ABC1_TM_dom,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626				64	0	0	32	5	13.5135
CPED1	0	genome.wustl.edu	37	7	120911387	120911388	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	120911387	120911388	-	A	INS	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	frame_shift_ins	c.2771_2772	p.H927fs	1.000:1.000	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				83	0	0	63	27	30
FEZF1	0	genome.wustl.edu	37	7	121943770	121943771	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	121943770	121943771	-	T	INS	FEZF1	ENST00000442488	human	ensembl	74_37	-1	known	frame_shift_ins	c.722_721	p.I241fs	0.998:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF1	HGNC	ENSG00000128610				153	0	0	122	47	27.8107
WASL	0	genome.wustl.edu	37	7	123346380	123346380	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	123346380	123346380	T	-	DEL	WASL	ENST00000223023	human	ensembl	74_37	-1	known	frame_shift_del	c.387	p.K129fs	1.000	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	pfam_WH1/EVH1,pfam_CRIB_dom,pfam_WH2_dom,superfamily_WASP_C,smart_WH1/EVH1,smart_CRIB_dom,smart_WH2_dom,pfscan_CRIB_dom,pfscan_WH1/EVH1,pfscan_WH2_dom	-	no_errors	WASL	HGNC	ENSG00000106299				39	0	0	37	7	15.9091
TNPO3	0	genome.wustl.edu	37	7	128610259	128610259	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	128610259	128610259	G	-	DEL	TNPO3	ENST00000393245	human	ensembl	74_37	-1	known	frame_shift_del	c.2643	p.Y882fs	0.805	NULL	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419				216	1	0.460829	222	79	26.2458
TMEM140	0	genome.wustl.edu	37	7	134849483	134849483	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	134849483	134849483	C	-	DEL	TMEM140	ENST00000275767	human	ensembl	74_37	+1	known	frame_shift_del	c.290	p.Q99fs	0.001	NULL	NULL	-	no_errors	TMEM140	HGNC	ENSG00000146859				105	0	0	92	26	22.0339
C7orf49	0	genome.wustl.edu	37	7	134851448	134851448	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	134851448	134851448	C	-	DEL	C7orf49	ENST00000393114	human	ensembl	74_37	-1	known	frame_shift_del	c.389	p.G130fs	0.000	NULL	NULL	-	no_errors	C7orf49	HGNC	ENSG00000122783				127	0	0	116	25	17.7305
PTN	0	genome.wustl.edu	37	7	136938376	136938377	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	136938376	136938377	-	T	INS	PTN	ENST00000348225	human	ensembl	74_37	-1	known	frame_shift_ins	c.124_123	p.V41fs	1.000:1.000	pfam_PTN/MK_N_dom,superfamily_PTN/MK_diS	pfam_PTN/MK_C_dom,pfam_PTN/MK_N_dom,superfamily_PTN/MK_diS,smart_Midkine_heparin-bd_GF,prints_Midkine_heparin-bd_GF	-	no_errors	PTN	HGNC	ENSG00000105894				32	0	0	35	5	12.5
WEE2-AS1	0	genome.wustl.edu	37	7	141423729	141423729	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	141423729	141423729	T	-	DEL	WEE2-AS1	ENST00000459753	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	WEE2-AS1	HGNC	ENSG00000228775				51	0	0	23	9	28.125
ZNF425	0	genome.wustl.edu	37	7	148809437	148809437	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	148809437	148809437	T	-	DEL	ZNF425	ENST00000484196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	ZNF425	HGNC	ENSG00000204947				146	0	0	134	41	23.4286
ZNF398	0	genome.wustl.edu	37	7	148875815	148875817	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	148875815	148875817	CTC	-	DEL	ZNF398	ENST00000540950	human	ensembl	74_37	+1	known	in_frame_del	c.866_868	p.P291in_frame_del	0.007:0.000:0.013	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF398	HGNC	ENSG00000197024				319	0	0	244	80	24.6914
ZNF398	0	genome.wustl.edu	37	7	148876153	148876153	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	148876153	148876153	C	-	DEL	ZNF398	ENST00000540950	human	ensembl	74_37	+1	known	frame_shift_del	c.1204	p.T404fs	0.819	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF398	HGNC	ENSG00000197024				207	0	0	186	53	22.1757
ZNF282	0	genome.wustl.edu	37	7	148895829	148895829	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	148895829	148895829	G	-	DEL	ZNF282	ENST00000262085	human	ensembl	74_37	+1	known	frame_shift_del	c.570	p.E192fs	1.000	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF282	HGNC	ENSG00000170265				149	0	0	164	49	23.0047
SSPO	0	genome.wustl.edu	37	7	149508059	149508059	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	149508059	149508059	C	-	DEL	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				87	0	0	60	12	16.6667
NUB1	0	genome.wustl.edu	37	7	151046320	151046320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	151046320	151046320	A	-	DEL	NUB1	ENST00000568733	human	ensembl	74_37	+1	known	frame_shift_del	c.351	p.D120fs	0.301	NULL	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	NUB1	HGNC	ENSG00000013374				62	0	0	93	5	5.10204
NUB1	0	genome.wustl.edu	37	7	151064135	151064135	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	151064135	151064135	A	-	DEL	NUB1	ENST00000568733	human	ensembl	74_37	+1	known	frame_shift_del	c.983	p.K330fs	0.964	NULL	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	NUB1	HGNC	ENSG00000013374				54	0	0	50	7	12.2807
NUDT1	0	genome.wustl.edu	37	7	2284328	2284330	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	2284328	2284330	AAG	-	DEL	NUDT1	ENST00000343985	human	ensembl	74_37	+1	known	in_frame_del	c.188_190	p.E64in_frame_del	0.993:0.976:0.968	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_OxG-triPHTase,prints_Nudix_hydrolase	-	no_errors	NUDT1	HGNC	ENSG00000106268				33	0	0	29	14	32.5581
CCDC126	0	genome.wustl.edu	37	7	23650855	23650855	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	23650855	23650855	T	-	DEL	CCDC126	ENST00000486109	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.020	-	-	-	no_errors	CCDC126	HGNC	ENSG00000169193				34	0	0	16	9	36
EVX1-AS	0	genome.wustl.edu	37	7	27283201	27283202	+	RNA	DEL	CT	CT	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	27283201	27283202	CT	-	DEL	EVX1-AS	ENST00000519218	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018:0.028	-	-	-	no_errors	EVX1-AS	HGNC	ENSG00000253405				13	0	0	12	5	29.4118
CARD11	0	genome.wustl.edu	37	7	2968323	2968323	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	2968323	2968323	G	-	DEL	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	frame_shift_del	c.1663	p.R555fs	0.080	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				101	0	0	95	25	20.8333
DPY19L2P1	0	genome.wustl.edu	37	7	35130115	35130115	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	35130115	35130115	A	-	DEL	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				22	0	0	11	4	26.6667
GLI3	0	genome.wustl.edu	37	7	42005573	42005573	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	42005573	42005573	G	-	DEL	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	frame_shift_del	c.3098	p.P1033fs	0.131	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				37	0	0	36	22	37.931
POLM	0	genome.wustl.edu	37	7	44120414	44120414	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	44120414	44120414	G	-	DEL	POLM	ENST00000242248	human	ensembl	74_37	-1	known	frame_shift_del	c.290	p.P97fs	0.047	superfamily_BRCT_dom,pirsf_TdT/Mu,pfscan_BRCT_dom	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	POLM	HGNC	ENSG00000122678				133	0	0	147	38	20.5405
RADIL	0	genome.wustl.edu	37	7	4841484	4841484	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	4841484	4841484	G	-	DEL	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	frame_shift_del	c.2642	p.P881fs	0.001	NULL	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927				19	0	0	19	6	24
RADIL	0	genome.wustl.edu	37	7	4841575	4841575	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	4841575	4841575	G	-	DEL	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	frame_shift_del	c.2551	p.L851fs	0.000	NULL	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927				14	0	0	19	5	20.8333
FIGNL1	0	genome.wustl.edu	37	7	50514009	50514009	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	50514009	50514009	T	-	DEL	FIGNL1	ENST00000356889	human	ensembl	74_37	-1	known	frame_shift_del	c.977	p.K326fs	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436				83	0	0	63	11	14.8649
ZDHHC4	0	genome.wustl.edu	37	7	6621849	6621849	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	6621849	6621849	T	-	DEL	ZDHHC4	ENST00000335965	human	ensembl	74_37	+1	known	frame_shift_del	c.337	p.F115fs	0.001	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC4	HGNC	ENSG00000136247				230	1	0.4329	152	34	18.2796
PRKAR1B	0	genome.wustl.edu	37	7	720281	720281	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	720281	720281	G	-	DEL	PRKAR1B	ENST00000360274	human	ensembl	74_37	-1	known	frame_shift_del	c.260	p.P87fs	0.998	pirsf_cAMP_dep_PK_reg_su	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1B	HGNC	ENSG00000188191				85	0	0	105	33	23.913
ELN	0	genome.wustl.edu	37	7	73461040	73461040	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	73461040	73461040	G	-	DEL	ELN	ENST00000358929	human	ensembl	74_37	+1	known	frame_shift_del	c.586	p.G197fs	0.996	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540				71	0	0	72	24	25
RHBDD2	0	genome.wustl.edu	37	7	75512837	75512837	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	75512837	75512837	A	-	DEL	RHBDD2	ENST00000467406	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	RHBDD2	HGNC	ENSG00000005486				12	0	0	4	12	75
TMEM60	0	genome.wustl.edu	37	7	77423301	77423301	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	77423301	77423301	A	-	DEL	TMEM60	ENST00000257663	human	ensembl	74_37	-1	known	frame_shift_del	c.390	p.F130fs	0.996	NULL	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM60	HGNC	ENSG00000135211				74	0	0	74	21	22.1053
ICA1	0	genome.wustl.edu	37	7	8198251	8198251	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	8198251	8198251	T	-	DEL	ICA1	ENST00000422063	human	ensembl	74_37	-1	known	frame_shift_del	c.611	p.N204fs	1.000	pfam_AH_dom,pfscan_AH_dom	pfam_AH_dom,pfam_Islet_autoAg_Ica1_C,pfscan_AH_dom	-	no_errors	ICA1	HGNC	ENSG00000003147				71	0	0	43	15	25.8621
PCLO	0	genome.wustl.edu	37	7	82595608	82595608	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	82595608	82595608	T	-	DEL	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	frame_shift_del	c.3496	p.T1166fs	0.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				65	0	0	52	16	23.5294
RUNDC3B	0	genome.wustl.edu	37	7	87258157	87258157	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	87258157	87258157	G	-	DEL	RUNDC3B	ENST00000338056	human	ensembl	74_37	+1	known	frame_shift_del	c.18	p.G8fs	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784				9	0	0	17	5	22.7273
DBF4	0	genome.wustl.edu	37	7	87536669	87536670	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	87536669	87536670	-	A	INS	DBF4	ENST00000265728	human	ensembl	74_37	+1	known	frame_shift_ins	c.1216_1217	p.L409fs	0.162:0.142	NULL	pfam_Znf_DBF,superfamily_BRCT_dom,smart_Znf_DBF	-	no_errors	DBF4	HGNC	ENSG00000006634				89	0	0	91	28	23.5294
C7orf63	0	genome.wustl.edu	37	7	89929188	89929188	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	89929188	89929188	A	-	DEL	C7orf63	ENST00000389297	human	ensembl	74_37	+1	known	frame_shift_del	c.1865	p.K624fs	0.996	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C7orf63	HGNC	ENSG00000105792				29	0	0	23	4	14.8148
AKAP9	0	genome.wustl.edu	37	7	91603085	91603085	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	91603085	91603085	A	-	DEL	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_del	c.145	p.K51fs	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				49	0	0	57	14	19.7183
CASD1	0	genome.wustl.edu	37	7	94174999	94174999	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	94174999	94174999	A	-	DEL	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	frame_shift_del	c.1619	p.A543fs	1.000	pfam_Cas1_AcylTrans_dom	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995				29	0	0	17	17	50
ZKSCAN1	0	genome.wustl.edu	37	7	99631140	99631140	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	99631140	99631140	A	-	DEL	ZKSCAN1	ENST00000324306	human	ensembl	74_37	+1	known	frame_shift_del	c.1012	p.T340fs	0.273	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN1	HGNC	ENSG00000106261				51	0	0	70	13	15.6627
COPS6	0	genome.wustl.edu	37	7	99688867	99688871	+	Frame_Shift_Del	DEL	AACAC	AACAC	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AACAC	AACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	99688867	99688871	AACAC	-	DEL	COPS6	ENST00000303904	human	ensembl	74_37	+1	known	frame_shift_del	c.656_660	p.E219fs	1.000:1.000:1.000:1.000:1.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	COPS6	HGNC	ENSG00000168090				310	0	0	358	59	14.1487
AP4M1	0	genome.wustl.edu	37	7	99704296	99704296	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	7	99704296	99704296	C	-	DEL	AP4M1	ENST00000359593	human	ensembl	74_37	+1	known	frame_shift_del	c.1153	p.P386fs	0.015	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,prints_Clathrin_mu,pfscan_Clathrin_mu_C	-	no_errors	AP4M1	HGNC	ENSG00000221838				129	0	0	93	30	24.3902
RGS22	0	genome.wustl.edu	37	8	100990178	100990178	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	100990178	100990178	T	-	DEL	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	frame_shift_del	c.3486	p.K1162fs	0.010	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				72	0	0	19	7	26.9231
DCAF13	0	genome.wustl.edu	37	8	104439487	104439487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	104439487	104439487	T	-	DEL	DCAF13	ENST00000519682	human	ensembl	74_37	+1	putative	frame_shift_del	c.619	p.F209fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				44	0	0	15	8	34.7826
RIMS2	0	genome.wustl.edu	37	8	104927779	104927779	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	104927779	104927779	A	-	DEL	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	frame_shift_del	c.1869	p.G626fs	0.009	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				75	0	0	31	8	20.5128
ENSG00000223697	0	genome.wustl.edu	37	8	133855257	133855257	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	133855257	133855257	T	-	DEL	ENSG00000223697	ENST00000608375	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AF230666.2	Clone_based_vega_gene	ENSG00000223697				16	0	0	5	5	50
SLA	0	genome.wustl.edu	37	8	134063099	134063100	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	134063099	134063100	-	G	INS	SLA	ENST00000427060	human	ensembl	74_37	-1	known	frame_shift_ins	c.243_242	p.I82fs	0.056:0.999	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2	-	no_errors	SLA	HGNC	ENSG00000155926				94	0	0	65	14	17.7215
PTK2	0	genome.wustl.edu	37	8	141754889	141754891	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	141754889	141754891	AAA	-	DEL	PTK2	ENST00000518509	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.004:0.005	-	-	-	no_errors	PTK2	HGNC	ENSG00000169398				29	0	0	13	7	35
LYPD2	0	genome.wustl.edu	37	8	143832494	143832495	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	143832494	143832495	-	T	INS	LYPD2	ENST00000359228	human	ensembl	74_37	-1	known	frame_shift_ins	c.153_152	p.T52fs	0.999:1.000	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LYPD2	HGNC	ENSG00000197353				155	0	0	133	59	30.7292
ENSG00000204791	0	genome.wustl.edu	37	8	145106384	145106384	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	145106384	145106384	G	-	DEL	ENSG00000204791	ENST00000528912	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTD-3065J16.6	Clone_based_vega_gene	ENSG00000204791				21	0	0	26	4	13.3333
ENSG00000204791	0	genome.wustl.edu	37	8	145106391	145106392	+	RNA	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	145106391	145106392	-	C	INS	ENSG00000204791	ENST00000528912	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.260:0.161	-	-	-	no_errors	CTD-3065J16.6	Clone_based_vega_gene	ENSG00000204791				21	0	0	9	15	62.5
MICU3	0	genome.wustl.edu	37	8	16944491	16944491	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	16944491	16944491	A	-	DEL	MICU3	ENST00000318063	human	ensembl	74_37	+1	known	frame_shift_del	c.796	p.N268fs	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU3	HGNC	ENSG00000155970				33	0	0	15	6	28.5714
ARHGEF10	0	genome.wustl.edu	37	8	1871167	1871167	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	1871167	1871167	T	-	DEL	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	frame_shift_del	c.2256	p.L753fs	0.980	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				102	0	0	24	11	31.4286
DMTN	0	genome.wustl.edu	37	8	21927823	21927823	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	21927823	21927823	C	-	DEL	DMTN	ENST00000265800	human	ensembl	74_37	+1	known	frame_shift_del	c.582	p.P196fs	0.991	NULL	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	DMTN	HGNC	ENSG00000158856				85	0	0	51	26	33.7662
HR	0	genome.wustl.edu	37	8	21984903	21984903	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	21984903	21984903	C	-	DEL	HR	ENST00000381418	human	ensembl	74_37	-1	known	frame_shift_del	c.1052	p.G351fs	0.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453				87	0	0	62	25	28.7356
BMP1	0	genome.wustl.edu	37	8	22054259	22054260	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	22054259	22054260	-	CC	INS	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	frame_shift_ins	c.1832_1833	p.N614fs	1.000:1.000	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487				81	0	0	47	20	29.8507
BIN3	0	genome.wustl.edu	37	8	22487477	22487477	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	22487477	22487477	T	-	DEL	BIN3	ENST00000276416	human	ensembl	74_37	-1	known	frame_shift_del	c.338	p.K113fs	1.000	pfam_BAR_dom,pfam_Vps5_C,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_Vps5_C,smart_BAR_dom,pfscan_BAR_dom	-	no_errors	BIN3	HGNC	ENSG00000147439				21	0	0	10	6	37.5
ENTPD4	0	genome.wustl.edu	37	8	23292044	23292045	+	RNA	INS	-	-	CA			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	23292044	23292045	-	CA	INS	ENTPD4	ENST00000522913	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ENTPD4	HGNC	ENSG00000197217				31	0	0	26	6	18.75
ADAM28	0	genome.wustl.edu	37	8	24167472	24167473	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	24167472	24167473	-	A	INS	ADAM28	ENST00000265769	human	ensembl	74_37	+1	known	frame_shift_ins	c.216_217	p.N74fs	1.000:1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM28	HGNC	ENSG00000042980				112	1	0.884956	44	18	29.0323
ADAMDEC1	0	genome.wustl.edu	37	8	24257686	24257686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	24257686	24257686	A	-	DEL	ADAMDEC1	ENST00000256412	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	0.044	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028				20	0	0	11	5	31.25
TUBBP1	0	genome.wustl.edu	37	8	30209504	30209504	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	30209504	30209504	A	-	DEL	TUBBP1	ENST00000518096	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	TUBBP1	HGNC	ENSG00000127589				52	0	0	44	21	32.3077
GOT1L1	0	genome.wustl.edu	37	8	37791834	37791834	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	37791834	37791834	T	-	DEL	GOT1L1	ENST00000307599	human	ensembl	74_37	-1	known	frame_shift_del	c.1243	p.T415fs	0.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,prints_Asp_trans	-	no_errors	GOT1L1	HGNC	ENSG00000169154				104	0	0	43	35	44.8718
FBXO25	0	genome.wustl.edu	37	8	381399	381399	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	381399	381399	A	-	DEL	FBXO25	ENST00000276326	human	ensembl	74_37	+1	known	frame_shift_del	c.193	p.R67fs	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO25	HGNC	ENSG00000147364				99	0	0	49	14	22.2222
SOX17	0	genome.wustl.edu	37	8	55372287	55372288	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	55372287	55372288	-	C	INS	SOX17	ENST00000297316	human	ensembl	74_37	+1	known	frame_shift_ins	c.977_978	p.G330fs	0.999:0.981	pfam_Sox_C_TAD	pfam_Sox_C_TAD,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX17	HGNC	ENSG00000164736				11	0	0	9	5	35.7143
SDCBP	0	genome.wustl.edu	37	8	59477589	59477589	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	59477589	59477589	A	-	DEL	SDCBP	ENST00000523483	human	ensembl	74_37	+1	putative	frame_shift_del	c.60	p.M22fs	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP	HGNC	ENSG00000137575				47	0	0	15	4	21.0526
ANGPT2	0	genome.wustl.edu	37	8	6378798	6378798	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	6378798	6378798	T	-	DEL	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	frame_shift_del	c.700	p.I234fs	0.004	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				105	0	0	29	14	32.5581
RRS1	0	genome.wustl.edu	37	8	67341501	67341501	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	67341501	67341501	C	-	DEL	RRS1	ENST00000320270	human	ensembl	74_37	+1	known	frame_shift_del	c.135	p.P47fs	1.000	pfam_Ribosom_reg	pfam_Ribosom_reg	-	no_errors	RRS1	HGNC	ENSG00000179041				14	0	0	12	4	25
ARFGEF1	0	genome.wustl.edu	37	8	68128856	68128856	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	68128856	68128856	G	-	DEL	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	frame_shift_del	c.4655	p.P1552fs	0.000	NULL	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				85	0	0	42	18	30
SLCO5A1	0	genome.wustl.edu	37	8	70744246	70744246	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	70744246	70744246	G	-	DEL	SLCO5A1	ENST00000260126	human	ensembl	74_37	-1	known	frame_shift_del	c.663	p.Y222fs	0.127	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571				57	0	0	32	15	31.9149
SLC10A5	0	genome.wustl.edu	37	8	82606649	82606650	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	82606649	82606650	-	A	INS	SLC10A5	ENST00000518568	human	ensembl	74_37	-1	known	frame_shift_ins	c.559_558	p.L186fs	1.000:1.000	pfam_BilAc/Na_symport	pfam_BilAc/Na_symport	-	no_errors	SLC10A5	HGNC	ENSG00000253598				119	0	0	60	30	33.3333
SLC26A7	0	genome.wustl.edu	37	8	92407491	92407491	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	92407491	92407491	T	-	DEL	SLC26A7	ENST00000520249	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC26A7	HGNC	ENSG00000147606				29	0	0	11	5	31.25
SNORA72	0	genome.wustl.edu	37	8	99054837	99054837	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	8	99054837	99054837	A	-	DEL	SNORA72	ENST00000501016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.049	-	-	-	no_errors	KB-1208A12.3	Clone_based_vega_gene	ENSG00000245970				74	0	0	20	26	56.5217
ABCA1	0	genome.wustl.edu	37	9	107588115	107588115	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	107588115	107588115	A	-	DEL	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	frame_shift_del	c.2391	p.F797fs	0.973	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				105	0	0	112	12	9.67742
OR2K2	0	genome.wustl.edu	37	9	114089909	114089909	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	114089909	114089909	T	-	DEL	OR2K2	ENST00000374428	human	ensembl	74_37	-1	known	frame_shift_del	c.892	p.I298fs	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2K2	HGNC	ENSG00000171133				98	0	0	40	16	28.5714
ASTN2	0	genome.wustl.edu	37	9	119495717	119495717	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	119495717	119495717	C	-	DEL	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	frame_shift_del	c.2482	p.V828fs	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				167	1	0.595238	121	34	21.9355
GAPVD1	0	genome.wustl.edu	37	9	128064303	128064303	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	128064303	128064303	T	-	DEL	GAPVD1	ENST00000394105	human	ensembl	74_37	+1	known	frame_shift_del	c.227	p.L77fs	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219				108	0	0	48	24	33.3333
TOR2A	0	genome.wustl.edu	37	9	130496603	130496604	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	130496603	130496604	-	G	INS	TOR2A	ENST00000373284	human	ensembl	74_37	-1	known	frame_shift_ins	c.392_391	p.H131fs	0.185:0.198	pirsf_Torsin_subgr,pfam_Torsin,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pirsf_Torsin_subgr,pfam_Torsin,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_ClpA/B	-	no_errors	TOR2A	HGNC	ENSG00000160404				52	0	0	34	15	30.6122
TRUB2	0	genome.wustl.edu	37	9	131073317	131073317	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	131073317	131073317	G	-	DEL	TRUB2	ENST00000461180	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	TRUB2	HGNC	ENSG00000167112				148	0	0	88	10	10.2041
ENSG00000236986	0	genome.wustl.edu	37	9	134008392	134008392	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	134008392	134008392	T	-	DEL	ENSG00000236986	ENST00000587264	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-544A12.4	Clone_based_vega_gene	ENSG00000236986				35	0	0	12	10	45.4545
NUP214	0	genome.wustl.edu	37	9	134073007	134073008	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	134073007	134073008	-	CC	INS	NUP214	ENST00000451030	human	ensembl	74_37	+1	known	frame_shift_ins	c.4129_4130	p.V1380fs	0.000:0.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883				126	0	0	99	34	25.5639
TTF1	0	genome.wustl.edu	37	9	135277373	135277373	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	135277373	135277373	T	-	DEL	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	frame_shift_del	c.836	p.K279fs	0.003	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				143	0	0	83	31	27.193
GTF3C4	0	genome.wustl.edu	37	9	135554691	135554691	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	135554691	135554691	A	-	DEL	GTF3C4	ENST00000372146	human	ensembl	74_37	+1	known	frame_shift_del	c.1685	p.K564fs	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484				155	0	0	92	29	23.9669
RPL7A	0	genome.wustl.edu	37	9	136216817	136216819	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	136216817	136216819	GAG	-	DEL	RPL7A	ENST00000323345	human	ensembl	74_37	+1	known	in_frame_del	c.325_327	p.E109in_frame_del	1.000:1.000:1.000	prints_Ribosomal_L7A/L8	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,prints_Ribosomal_L7A/L8,prints_Ribosomal_L7Ae/L8/Nhp2	-	no_errors	RPL7A	HGNC	ENSG00000148303				82	0	0	47	29	38.1579
LINC00094	0	genome.wustl.edu	37	9	136899776	136899776	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	136899776	136899776	C	-	DEL	LINC00094	ENST00000605164	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00094	HGNC	ENSG00000235106				43	0	0	36	12	25
RXRA	0	genome.wustl.edu	37	9	137300039	137300040	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	137300039	137300040	-	C	INS	RXRA	ENST00000481739	human	ensembl	74_37	+1	known	frame_shift_ins	c.324_325	p.L110fs	1.000:1.000	pfam_Nuc_recep-AF1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350				52	0	0	30	9	23.0769
PPP1R26	0	genome.wustl.edu	37	9	138378661	138378661	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	138378661	138378661	C	-	DEL	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	frame_shift_del	c.2305	p.S771fs	0.000	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				30	0	0	19	13	40.625
LHX3	0	genome.wustl.edu	37	9	139090598	139090598	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	139090598	139090598	C	-	DEL	LHX3	ENST00000371746	human	ensembl	74_37	-1	known	frame_shift_del	c.690	p.Q231fs	0.110	superfamily_Homeodomain-like	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX3	HGNC	ENSG00000107187				54	0	0	27	16	37.2093
SEC16A	0	genome.wustl.edu	37	9	139370379	139370379	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	139370379	139370379	A	-	DEL	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	frame_shift_del	c.1689	p.F563fs	1.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				35	0	0	19	10	34.4828
PNPLA7	0	genome.wustl.edu	37	9	140356679	140356679	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	140356679	140356679	G	-	DEL	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	frame_shift_del	c.3597	p.I1200fs	1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				83	0	0	60	19	24.0506
CNTLN	0	genome.wustl.edu	37	9	17484353	17484353	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	17484353	17484353	A	-	DEL	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	frame_shift_del	c.3916	p.M1308fs	0.999	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				134	0	0	97	49	33.5616
ADAMTSL1	0	genome.wustl.edu	37	9	18680350	18680350	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	18680350	18680350	G	-	DEL	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	frame_shift_del	c.1177	p.G395fs	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				68	0	0	45	13	22.4138
MLLT3	0	genome.wustl.edu	37	9	20622295	20622295	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	20622295	20622295	C	-	DEL	MLLT3	ENST00000475957	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843				16	0	0	10	13	56.5217
TOPORS	0	genome.wustl.edu	37	9	32542262	32542262	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	32542262	32542262	T	-	DEL	TOPORS	ENST00000360538	human	ensembl	74_37	-1	known	frame_shift_del	c.2261	p.N754fs	0.794	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TOPORS	HGNC	ENSG00000197579				154	1	0.645161	62	36	36.7347
PIGO	0	genome.wustl.edu	37	9	35091415	35091416	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	35091415	35091416	CA	-	DEL	PIGO	ENST00000341666	human	ensembl	74_37	-1	known	frame_shift_del	c.2469_2468	p.V823fs	1.000:1.000	NULL	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282				61	0	0	37	23	38.3333
FAM214B	0	genome.wustl.edu	37	9	35108148	35108148	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	35108148	35108148	C	-	DEL	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	frame_shift_del	c.124	p.A42fs	0.584	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238				26	0	0	17	11	39.2857
ATP8B5P	0	genome.wustl.edu	37	9	35450411	35450411	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	35450411	35450411	T	-	DEL	ATP8B5P	ENST00000430846	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.812	-	-	-	no_errors	ATP8B5P	HGNC	ENSG00000179766				10	0	0	4	3	42.8571
TESK1	0	genome.wustl.edu	37	9	35606842	35606843	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	35606842	35606843	-	G	INS	TESK1	ENST00000336395	human	ensembl	74_37	+1	known	frame_shift_ins	c.399_400	p.T135fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TESK1	HGNC	ENSG00000107140				79	0	0	65	18	21.6867
GBA2	0	genome.wustl.edu	37	9	35741459	35741459	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	35741459	35741459	T	-	DEL	GBA2	ENST00000485259	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.125	-	-	-	no_errors	GBA2	HGNC	ENSG00000070610				9	0	0	3	5	62.5
RECK	0	genome.wustl.edu	37	9	36112461	36112461	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	36112461	36112461	A	-	DEL	RECK	ENST00000377966	human	ensembl	74_37	+1	known	frame_shift_del	c.2048	p.N685fs	0.002	NULL	pfam_Kazal_dom,superfamily_Prot_inh_PMP,smart_Kazal_dom	-	no_errors	RECK	HGNC	ENSG00000122707				54	0	0	46	12	20.6897
RNF38	0	genome.wustl.edu	37	9	36353240	36353240	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	36353240	36353240	G	-	DEL	RNF38	ENST00000259605	human	ensembl	74_37	-1	known	frame_shift_del	c.998	p.P333fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF38	HGNC	ENSG00000137075				84	0	0	48	16	25
KIAA2026	0	genome.wustl.edu	37	9	5968162	5968162	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	5968162	5968162	T	-	DEL	KIAA2026	ENST00000399933	human	ensembl	74_37	-1	novel	frame_shift_del	c.2069	p.K690fs	1.000	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354				18	0	0	8	7	46.6667
TMEM2	0	genome.wustl.edu	37	9	74347430	74347430	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	74347430	74347430	G	-	DEL	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	frame_shift_del	c.1400	p.P467fs	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				72	0	0	28	12	30
ZNF484	0	genome.wustl.edu	37	9	95609940	95609940	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	95609940	95609940	T	-	DEL	ZNF484	ENST00000395506	human	ensembl	74_37	-1	known	frame_shift_del	c.1135	p.I379fs	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081				70	0	0	39	6	13.3333
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				22	0	0	12	2	14.2857
GPRASP2	0	genome.wustl.edu	37	X	101970978	101970978	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	101970978	101970978	A	-	DEL	GPRASP2	ENST00000332262	human	ensembl	74_37	+1	known	frame_shift_del	c.1181	p.E396fs	0.990	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301				131	0	0	76	43	36.1345
NRK	0	genome.wustl.edu	37	X	105150563	105150564	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	105150563	105150564	-	A	INS	NRK	ENST00000428173	human	ensembl	74_37	+1	known	frame_shift_ins	c.1002_1003	p.R336fs	0.964:0.999	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572				14	0	0	9	4	30.7692
CLDN2	0	genome.wustl.edu	37	X	106171828	106171828	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	106171828	106171828	T	-	DEL	CLDN2	ENST00000336803	human	ensembl	74_37	+1	known	frame_shift_del	c.370	p.F125fs	0.942	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin2,prints_Claudin,prints_Claudin14	-	no_errors	CLDN2	HGNC	ENSG00000165376				181	0	0	60	24	28.5714
GUCY2F	0	genome.wustl.edu	37	X	108708521	108708521	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	108708521	108708521	G	-	DEL	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	frame_shift_del	c.882	p.Y295fs	0.930	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890				243	0	0	85	62	42.1769
AMMECR1	0	genome.wustl.edu	37	X	109561079	109561080	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	109561079	109561080	-	G	INS	AMMECR1	ENST00000262844	human	ensembl	74_37	-1	known	frame_shift_ins	c.221_220	p.Q74fs	0.998:0.997	NULL	pfam_AMMECR1_domain,superfamily_AMMECR1_domain,pfscan_AMMECR1_domain,tigrfam_AMMECR1	-	no_errors	AMMECR1	HGNC	ENSG00000101935				20	0	0	9	2	18.1818
MIR4329	0	genome.wustl.edu	37	X	112023978	112023978	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	112023978	112023978	A	-	DEL	MIR4329	ENST00000582643	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MIR4329	HGNC	ENSG00000263351				15	0	0	9	6	40
MIR1277	0	genome.wustl.edu	37	X	117520366	117520367	+	RNA	DEL	AT	AT	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	117520366	117520367	AT	-	DEL	MIR1277	ENST00000408536	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.986:0.997	-	-	-	no_errors	MIR1277	HGNC	ENSG00000221463				87	0	0	29	17	36.9565
DOCK11	0	genome.wustl.edu	37	X	117732047	117732047	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	117732047	117732047	A	-	DEL	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	frame_shift_del	c.2440	p.S815fs	0.999	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251				162	0	0	56	15	21.1268
SEPT6	0	genome.wustl.edu	37	X	118753946	118753947	+	RNA	INS	-	-	G			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	118753946	118753947	-	G	INS	SEPT6	ENST00000467310	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999:0.994	-	-	-	no_errors	SEPT6	HGNC	ENSG00000125354				25	0	0	24	19	44.186
LAMP2	0	genome.wustl.edu	37	X	119575705	119575705	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	119575705	119575705	G	-	DEL	LAMP2	ENST00000434600	human	ensembl	74_37	-1	known	frame_shift_del	c.973	p.L325fs	0.006	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP2	HGNC	ENSG00000005893				113	0	0	66	11	14.2857
BCORL1	0	genome.wustl.edu	37	X	129190010	129190011	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	129190010	129190011	-	C	INS	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	frame_shift_ins	c.5257_5258	p.G1756fs	0.001:0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				126	0	0	81	22	21.3592
DDX26B	0	genome.wustl.edu	37	X	134680317	134680317	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	134680317	134680317	T	-	DEL	DDX26B	ENST00000370752	human	ensembl	74_37	+1	known	frame_shift_del	c.352	p.L120fs	1.000	pfscan_VWF_A	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359				61	0	0	15	5	25
CD99L2	0	genome.wustl.edu	37	X	149937447	149937447	+	RNA	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	149937447	149937447	G	-	DEL	CD99L2	ENST00000346693	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD99L2	HGNC	ENSG00000102181				89	0	0	77	17	18.0851
HMGB3	0	genome.wustl.edu	37	X	150156357	150156358	+	In_Frame_Ins	INS	-	-	GAG			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	150156357	150156358	-	GAG	INS	HMGB3	ENST00000325307	human	ensembl	74_37	+1	known	in_frame_ins	c.573_574	p.195in_frame_insE	0.023:0.987	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGB3	HGNC	ENSG00000029993				97	0	0	47	8	14.5455
GPR50	0	genome.wustl.edu	37	X	150345219	150345219	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	150345219	150345219	C	-	DEL	GPR50	ENST00000218316	human	ensembl	74_37	+1	known	frame_shift_del	c.26	p.Y11fs	0.085	prints_Mel_rcpt_1X	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mel_rcpt_1X,prints_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195				169	0	0	115	37	24.3421
ASMTL	0	genome.wustl.edu	37	X	1522202	1522202	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	1522202	1522202	C	-	DEL	ASMTL	ENST00000381317	human	ensembl	74_37	-1	known	frame_shift_del	c.1826	p.G609fs	0.003	NULL	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093				84	0	0	43	14	24.5614
SRPK3	0	genome.wustl.edu	37	X	153050207	153050208	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153050207	153050208	-	A	INS	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	frame_shift_ins	c.1251_1252	p.H418fs	1.000:1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343				112	0	0	90	43	32.3308
AVPR2	0	genome.wustl.edu	37	X	153171693	153171693	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153171693	153171693	G	-	DEL	AVPR2	ENST00000337474	human	ensembl	74_37	+1	known	frame_shift_del	c.733	p.R247fs	0.003	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895				105	0	0	47	32	40.5063
FLNA	0	genome.wustl.edu	37	X	153594579	153594580	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153594579	153594580	-	C	INS	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	frame_shift_ins	c.1242_1241	p.E415fs	0.005:0.994	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				124	0	0	89	27	23.2759
FIGF	0	genome.wustl.edu	37	X	15364159	15364159	+	RNA	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	15364159	15364159	T	-	DEL	FIGF	ENST00000488351	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FIGF	HGNC	ENSG00000165197				80	0	0	52	31	37.3494
PLXNA3	0	genome.wustl.edu	37	X	153688565	153688565	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153688565	153688565	G	-	DEL	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	frame_shift_del	c.42	p.A17fs	0.006	pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				122	1	0.813008	59	20	25.3165
DKC1	0	genome.wustl.edu	37	X	153994771	153994771	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	153994771	153994771	A	-	DEL	DKC1	ENST00000473552	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DKC1	HGNC	ENSG00000130826				14	0	0	6	8	57.1429
ACE2	0	genome.wustl.edu	37	X	15584646	15584646	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	15584646	15584646	A	-	DEL	ACE2	ENST00000473851	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACE2	HGNC	ENSG00000130234				52	0	0	51	11	17.7419
CTPS2	0	genome.wustl.edu	37	X	16609020	16609021	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	16609020	16609021	AA	-	DEL	CTPS2	ENST00000483053	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CTPS2	HGNC	ENSG00000047230				70	0	0	17	23	57.5
REPS2	0	genome.wustl.edu	37	X	17165605	17165605	+	RNA	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	17165605	17165605	C	-	DEL	REPS2	ENST00000469714	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.910	-	-	-	no_errors	REPS2	HGNC	ENSG00000169891				245	0	0	125	64	33.8624
SH3KBP1	0	genome.wustl.edu	37	X	19560215	19560215	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	19560215	19560215	G	-	DEL	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	frame_shift_del	c.1720	p.L574fs	0.002	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				89	0	0	78	24	23.5294
FAM47C	0	genome.wustl.edu	37	X	37028265	37028265	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	37028265	37028265	C	-	DEL	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	frame_shift_del	c.1782	p.P596fs	0.005	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				254	0	0	168	33	16.4179
MED14	0	genome.wustl.edu	37	X	40588606	40588607	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	40588606	40588607	AA	-	DEL	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MED14	HGNC	ENSG00000180182				53	0	0	18	15	45.4545
SLC9A7	0	genome.wustl.edu	37	X	46529070	46529070	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	46529070	46529070	A	-	DEL	SLC9A7	ENST00000328306	human	ensembl	74_37	-1	known	frame_shift_del	c.765	p.F255fs	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923				76	0	0	33	12	26.6667
ARAF	0	genome.wustl.edu	37	X	47426415	47426415	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	47426415	47426415	C	-	DEL	ARAF	ENST00000377045	human	ensembl	74_37	+1	known	frame_shift_del	c.758	p.R255fs	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	ARAF	HGNC	ENSG00000078061				67	0	0	33	17	34
WDR13	0	genome.wustl.edu	37	X	48457035	48457036	+	RNA	DEL	CC	CC	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	48457035	48457036	CC	-	DEL	WDR13	ENST00000479279	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	WDR13	HGNC	ENSG00000101940				18	0	0	21	8	27.5862
WDR13	0	genome.wustl.edu	37	X	48457490	48457491	+	RNA	DEL	AC	AC	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	48457490	48457491	AC	-	DEL	WDR13	ENST00000492715	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	WDR13	HGNC	ENSG00000101940				10	0	0	7	4	36.3636
VSIG4	0	genome.wustl.edu	37	X	65253607	65253607	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	65253607	65253607	A	-	DEL	VSIG4	ENST00000374737	human	ensembl	74_37	-1	known	frame_shift_del	c.121	p.C41fs	0.866	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	VSIG4	HGNC	ENSG00000155659				126	0	0	84	17	16.8317
HEPH	0	genome.wustl.edu	37	X	65409636	65409636	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	65409636	65409636	T	-	DEL	HEPH	ENST00000519389	human	ensembl	74_37	+1	known	frame_shift_del	c.1081	p.F362fs	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472				79	0	0	44	27	38.0282
PJA1	0	genome.wustl.edu	37	X	68382257	68382257	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	68382257	68382257	A	-	DEL	PJA1	ENST00000361478	human	ensembl	74_37	-1	known	frame_shift_del	c.825	p.F275fs	0.996	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA1	HGNC	ENSG00000181191				130	1	0.763359	56	26	31.7073
FAM155B	0	genome.wustl.edu	37	X	68725612	68725613	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	68725612	68725613	-	C	INS	FAM155B	ENST00000252338	human	ensembl	74_37	+1	known	frame_shift_ins	c.487_488	p.L166fs	0.069:0.029	NULL	NULL	-	no_errors	FAM155B	HGNC	ENSG00000130054				68	0	0	51	26	33.7662
P2RY4	0	genome.wustl.edu	37	X	69478418	69478418	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	69478418	69478418	G	-	DEL	P2RY4	ENST00000374519	human	ensembl	74_37	-1	known	frame_shift_del	c.1057	p.Q353fs	0.000	prints_P2Y4_rcpt,prints_P2Y2_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y4_rcpt,prints_GPCR_Rhodpsn,prints_P2Y2_rcpt	-	no_errors	P2RY4	HGNC	ENSG00000186912				129	0	0	82	10	10.8696
IL2RG	0	genome.wustl.edu	37	X	70330449	70330449	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	70330449	70330449	T	-	DEL	IL2RG	ENST00000374202	human	ensembl	74_37	-1	known	frame_shift_del	c.359	p.K120fs	0.000	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RG	HGNC	ENSG00000147168				108	0	0	53	19	26.3889
ZMYM3	0	genome.wustl.edu	37	X	70472854	70472854	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	70472854	70472854	C	-	DEL	ZMYM3	ENST00000373988	human	ensembl	74_37	-1	known	frame_shift_del	c.252	p.L85fs	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM3	HGNC	ENSG00000147130				61	0	0	36	13	26.5306
TAF1	0	genome.wustl.edu	37	X	70603000	70603000	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	70603000	70603000	A	-	DEL	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	frame_shift_del	c.1930	p.K646fs	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				63	0	0	41	14	25.4545
XIST	0	genome.wustl.edu	37	X	73071762	73071762	+	RNA	DEL	A	A	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	73071762	73071762	A	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.649	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				108	1	0.917431	57	34	37.3626
CYSLTR1	0	genome.wustl.edu	37	X	77528573	77528573	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	77528573	77528573	T	-	DEL	CYSLTR1	ENST00000373304	human	ensembl	74_37	-1	known	frame_shift_del	c.671	p.N224fs	0.947	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_CLT1_recept,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Cyst_leuk_rcpt,prints_CLT1_recept,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	CYSLTR1	HGNC	ENSG00000173198				74	0	0	29	14	32.5581
HMGN5	0	genome.wustl.edu	37	X	80377176	80377177	+	RNA	DEL	AA	AA	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	80377176	80377177	AA	-	DEL	HMGN5	ENST00000491275	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HMGN5	HGNC	ENSG00000198157				16	0	0	3	8	72.7273
POU3F4	0	genome.wustl.edu	37	X	82763837	82763837	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8487-01A-11D-2394-08	TCGA-BR-8487-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e5646c1a-3759-4bcb-8c91-1198d88b3544	cc00b160-fcfd-4ea2-9f61-a4aa9bc5b8c0	X	82763837	82763837	C	-	DEL	POU3F4	ENST00000373200	human	ensembl	74_37	+1	known	frame_shift_del	c.505	p.P170fs	0.862	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767				24	0	0	21	12	36.3636
