Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
COL11A1	0	genome.wustl.edu	37	1	103355106	103355106	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	103355106	103355106	A	C	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.4405	p.L1469V	0.997	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				83	0	0	53	3	5.35714
MASP2	0	genome.wustl.edu	37	1	11087139	11087139	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	11087139	11087139	C	A	SNP	MASP2	ENST00000400897	human	ensembl	74_37	-1	known	nonsense	c.1864	p.E622*	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MASP2	HGNC	ENSG00000009724				202	0	0	194	23	10.5991
CHRNB2	0	genome.wustl.edu	37	1	154544028	154544028	+	Silent	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	154544028	154544028	C	A	SNP	CHRNB2	ENST00000368476	human	ensembl	74_37	+1	known	silent	c.729	p.I243	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716				192	0	0	203	22	9.77778
ADAM15	0	genome.wustl.edu	37	1	155030414	155030414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	155030414	155030414	C	T	SNP	ADAM15	ENST00000356955	human	ensembl	74_37	+1	known	missense	c.1504	p.P502S	0.938	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537				99	0	0	131	11	7.74648
SNORA42	0	genome.wustl.edu	37	1	155889722	155889722	+	RNA	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	155889722	155889722	C	T	SNP	SNORA42	ENST00000384744	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	SNORA42	HGNC	ENSG00000207475				45	0	0	59	11	15.7143
LMNA	0	genome.wustl.edu	37	1	156106886	156106886	+	RNA	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	156106886	156106886	T	C	SNP	LMNA	ENST00000496738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LMNA	HGNC	ENSG00000160789				50	0	0	47	7	12.963
TRMT1L	0	genome.wustl.edu	37	1	185109148	185109148	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	185109148	185109148	T	C	SNP	TRMT1L	ENST00000367506	human	ensembl	74_37	-1	known	missense	c.1066	p.M356V	1.000	pfam_TRM1	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	TRMT1L	HGNC	ENSG00000121486				54	0	0	57	32	35.9551
HMCN1	0	genome.wustl.edu	37	1	186099106	186099106	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	186099106	186099106	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.12913	p.D4305Y	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				73	0	0	81	27	25
ARL8A	0	genome.wustl.edu	37	1	202107141	202107141	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	202107141	202107141	C	T	SNP	ARL8A	ENST00000272217	human	ensembl	74_37	-1	known	missense	c.230	p.R77H	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL8A	HGNC	ENSG00000143862				60	0	0	75	6	7.40741
PLCH2	0	genome.wustl.edu	37	1	2435628	2435628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	2435628	2435628	C	T	SNP	PLCH2	ENST00000378486	human	ensembl	74_37	+1	known	missense	c.3227	p.T1076M	0.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH2	HGNC	ENSG00000149527				8	0	0	7	3	30
OR2W5	0	genome.wustl.edu	37	1	247654885	247654885	+	RNA	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	247654885	247654885	C	T	SNP	OR2W5	ENST00000522351	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	OR2W5	HGNC	ENSG00000203664				104	0	0	84	8	8.69565
OR14A16	0	genome.wustl.edu	37	1	247978434	247978434	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	247978434	247978434	T	C	SNP	OR14A16	ENST00000357627	human	ensembl	74_37	-1	known	missense	c.598	p.I200V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14A16	HGNC	ENSG00000196772				45	0	0	82	7	7.86517
SFN	0	genome.wustl.edu	37	1	27189931	27189931	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	27189931	27189931	G	A	SNP	SFN	ENST00000339276	human	ensembl	74_37	+1	known	silent	c.228	p.E76	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	SFN	HGNC	ENSG00000175793				123	0	0	78	13	14.2857
CAMTA1	0	genome.wustl.edu	37	1	7792608	7792608	+	Silent	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	7792608	7792608	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	silent	c.3015	p.G1005	0.180	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				22	0	0	21	3	12.5
CPXM2	0	genome.wustl.edu	37	10	125539751	125539751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	10	125539751	125539751	G	A	SNP	CPXM2	ENST00000241305	human	ensembl	74_37	-1	known	missense	c.910	p.R304C	1.000	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898				79	0	0	98	15	13.2743
CHST3	0	genome.wustl.edu	37	10	73767375	73767375	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	10	73767375	73767375	T	A	SNP	CHST3	ENST00000373115	human	ensembl	74_37	+1	known	missense	c.586	p.F196I	0.986	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST3	HGNC	ENSG00000122863				40	0	0	24	3	11.1111
GUCY1A2	0	genome.wustl.edu	37	11	106888532	106888532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	11	106888532	106888532	G	A	SNP	GUCY1A2	ENST00000282249	human	ensembl	74_37	-1	known	missense	c.250	p.R84W	1.000	NULL	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402				10	0	0	12	4	25
C11orf87	0	genome.wustl.edu	37	11	109294782	109294782	+	Silent	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	11	109294782	109294782	C	T	SNP	C11orf87	ENST00000327419	human	ensembl	74_37	+1	known	silent	c.423	p.C141	0.791	NULL	superfamily_MFS_dom_general_subst_transpt	-	no_errors	C11orf87	HGNC	ENSG00000185742				146	0	0	126	13	9.35252
SIK3	0	genome.wustl.edu	37	11	116734447	116734447	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	11	116734447	116734447	G	T	SNP	SIK3	ENST00000375288	human	ensembl	74_37	-1	known	missense	c.17	p.S6Y	1.000	NULL	NULL	-	no_errors	SIK3	HGNC	ENSG00000160584				186	0	0	167	25	13.0208
OR51A7	0	genome.wustl.edu	37	11	4929383	4929383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	11	4929383	4929383	C	T	SNP	OR51A7	ENST00000359350	human	ensembl	74_37	+1	known	missense	c.784	p.H262Y	0.482	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR51A7	HGNC	ENSG00000176895				202	0	0	171	20	10.4712
OR5M3	0	genome.wustl.edu	37	11	56237908	56237908	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	11	56237908	56237908	T	G	SNP	OR5M3	ENST00000312240	human	ensembl	74_37	-1	known	missense	c.66	p.Q22H	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M3	HGNC	ENSG00000174937				72	0	0	86	10	10.4167
SF3B2	0	genome.wustl.edu	37	11	65825873	65825873	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	11	65825873	65825873	G	T	SNP	SF3B2	ENST00000322535	human	ensembl	74_37	+1	known	missense	c.963	p.K321N	0.962	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_dom,smart_SAP_dom,smart_PSP,pfscan_SAP_dom	-	no_errors	SF3B2	HGNC	ENSG00000087365				66	0	0	75	14	15.7303
DLG2	0	genome.wustl.edu	37	11	84996396	84996396	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	11	84996396	84996396	A	C	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	missense	c.54	p.F18L	1.000	pfam_L27_1,pfscan_L27	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				58	0	0	70	9	11.3924
ARID2	0	genome.wustl.edu	37	12	46246234	46246234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	12	46246234	46246234	G	A	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.4328	p.S1443N	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079				136	0	0	147	25	14.5349
CCNT1	0	genome.wustl.edu	37	12	49087216	49087216	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	12	49087216	49087216	C	T	SNP	CCNT1	ENST00000261900	human	ensembl	74_37	-1	known	missense	c.1781	p.S594N	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315				82	0	0	83	20	19.4175
RND1	0	genome.wustl.edu	37	12	49255803	49255803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	12	49255803	49255803	C	T	SNP	RND1	ENST00000309739	human	ensembl	74_37	-1	known	missense	c.307	p.A103T	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND1	HGNC	ENSG00000172602				49	0	0	36	5	12.1951
KCNA1	0	genome.wustl.edu	37	12	5021222	5021222	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	12	5021222	5021222	G	A	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	silent	c.678	p.T226	0.789	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				107	0	0	81	15	15.625
ACVR1B	0	genome.wustl.edu	37	12	52385743	52385743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	12	52385743	52385743	G	A	SNP	ACVR1B	ENST00000257963	human	ensembl	74_37	+1	known	missense	c.1358	p.R453H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503				103	0	0	94	13	12.1495
SRGAP1	0	genome.wustl.edu	37	12	64521762	64521762	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	12	64521762	64521762	A	G	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	missense	c.2662	p.S888G	0.773	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				124	0	0	84	16	16
MGAT4C	0	genome.wustl.edu	37	12	86383233	86383233	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	12	86383233	86383233	A	T	SNP	MGAT4C	ENST00000393205	human	ensembl	74_37	-1	known	missense	c.179	p.V60D	1.000	superfamily_LSM_dom	pfam_Glyco_transf_54,superfamily_LSM_dom	-	no_errors	MGAT4C	HGNC	ENSG00000182050				13	0	0	31	4	11.4286
CLEC4D	0	genome.wustl.edu	37	12	8672848	8672848	+	Silent	SNP	A	A	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	12	8672848	8672848	A	G	SNP	CLEC4D	ENST00000299665	human	ensembl	74_37	+1	known	silent	c.411	p.R137	0.042	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4D	HGNC	ENSG00000166527				51	0	0	61	6	8.95522
FGF14	0	genome.wustl.edu	37	13	102568988	102568988	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	13	102568988	102568988	G	T	SNP	FGF14	ENST00000376143	human	ensembl	74_37	-1	known	missense	c.8	p.A3E	1.000	NULL	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF14	HGNC	ENSG00000102466				17	0	0	18	9	33.3333
ATP11A	0	genome.wustl.edu	37	13	113508679	113508679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	13	113508679	113508679	C	T	SNP	ATP11A	ENST00000375630	human	ensembl	74_37	+1	known	missense	c.2078	p.T693M	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11A	HGNC	ENSG00000068650				55	0	0	69	7	9.21053
RASL11A	0	genome.wustl.edu	37	13	27847440	27847440	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	13	27847440	27847440	G	A	SNP	RASL11A	ENST00000241463	human	ensembl	74_37	+1	known	missense	c.538	p.E180K	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASL11A	HGNC	ENSG00000122035				41	0	0	39	11	22
SLC7A1	0	genome.wustl.edu	37	13	30097526	30097526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	13	30097526	30097526	G	A	SNP	SLC7A1	ENST00000380752	human	ensembl	74_37	-1	known	missense	c.926	p.T309M	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease	-	no_errors	SLC7A1	HGNC	ENSG00000139514				88	0	0	102	9	8.10811
SYNE2	0	genome.wustl.edu	37	14	64681128	64681128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	14	64681128	64681128	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.19273	p.V6425M	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				75	0	0	68	17	20
LINS	0	genome.wustl.edu	37	15	101114418	101114418	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	15	101114418	101114418	G	A	SNP	LINS	ENST00000314742	human	ensembl	74_37	-1	known	silent	c.660	p.F220	0.363	NULL	NULL	-	no_errors	LINS	HGNC	ENSG00000140471				48	0	0	41	3	6.81818
DNM1P47	0	genome.wustl.edu	37	15	102292770	102292770	+	RNA	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	15	102292770	102292770	C	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				26	0	0	23	5	17.8571
MTMR10	0	genome.wustl.edu	37	15	31244239	31244239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	15	31244239	31244239	G	A	SNP	MTMR10	ENST00000435680	human	ensembl	74_37	-1	known	missense	c.1139	p.A380V	0.008	NULL	pfam_Myotubularin_assoc,pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR10	HGNC	ENSG00000166912				34	0	0	32	5	13.5135
TPSAB1	0	genome.wustl.edu	37	16	1291454	1291454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	16	1291454	1291454	G	A	SNP	TPSAB1	ENST00000338844	human	ensembl	74_37	+1	known	missense	c.253	p.A85T	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TPSAB1	HGNC	ENSG00000172236				22	0	0	26	5	16.129
SMG1	0	genome.wustl.edu	37	16	18887699	18887699	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	16	18887699	18887699	T	C	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	missense	c.1637	p.H546R	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				17	0	0	18	3	14.2857
HS3ST6	0	genome.wustl.edu	37	16	1962078	1962078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	16	1962078	1962078	C	T	SNP	HS3ST6	ENST00000293937	human	ensembl	74_37	-1	known	missense	c.542	p.R181Q	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST6	HGNC	ENSG00000162040				56	0	0	45	10	18.1818
RAB26	0	genome.wustl.edu	37	16	2201750	2201750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	16	2201750	2201750	C	T	SNP	RAB26	ENST00000210187	human	ensembl	74_37	+1	known	missense	c.403	p.R135W	0.992	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB26	HGNC	ENSG00000167964				60	0	0	41	5	10.8696
ZKSCAN2	0	genome.wustl.edu	37	16	25258325	25258325	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	16	25258325	25258325	T	C	SNP	ZKSCAN2	ENST00000328086	human	ensembl	74_37	-1	known	missense	c.1192	p.K398E	1.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN2	HGNC	ENSG00000155592				150	0	0	158	17	9.71429
ZNF668	0	genome.wustl.edu	37	16	31073217	31073217	+	Silent	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	16	31073217	31073217	C	T	SNP	ZNF668	ENST00000426488	human	ensembl	74_37	-1	known	silent	c.1101	p.T367	0.012	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF668	HGNC	ENSG00000167394				155	0	0	111	15	11.9048
MYLK3	0	genome.wustl.edu	37	16	46761267	46761267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	16	46761267	46761267	C	T	SNP	MYLK3	ENST00000394809	human	ensembl	74_37	-1	known	missense	c.1795	p.D599N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK3	HGNC	ENSG00000140795				37	0	0	32	6	15.7895
CX3CL1	0	genome.wustl.edu	37	16	57416298	57416298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	16	57416298	57416298	C	T	SNP	CX3CL1	ENST00000006053	human	ensembl	74_37	+1	known	missense	c.548	p.T183M	0.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CX3CL1	-	no_errors	CX3CL1	HGNC	ENSG00000006210				125	0	0	100	13	11.5044
CTCF	0	genome.wustl.edu	37	16	67654694	67654694	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	16	67654694	67654694	T	C	SNP	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	missense	c.1181	p.L394P	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				57	0	0	84	10	10.6383
SDF2	0	genome.wustl.edu	37	17	26975987	26975987	+	RNA	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	17	26975987	26975987	G	A	SNP	SDF2	ENST00000585749	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	SDF2	HGNC	ENSG00000132581				77	0	0	51	13	20.3125
RAB11FIP4	0	genome.wustl.edu	37	17	29855754	29855754	+	Silent	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	17	29855754	29855754	C	T	SNP	RAB11FIP4	ENST00000325874	human	ensembl	74_37	+1	known	silent	c.1611	p.A537	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfscan_EF_hand_dom	-	no_errors	RAB11FIP4	HGNC	ENSG00000131242				31	0	0	25	4	13.7931
FBXO47	0	genome.wustl.edu	37	17	37101317	37101317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	17	37101317	37101317	C	T	SNP	FBXO47	ENST00000378079	human	ensembl	74_37	-1	known	missense	c.689	p.R230Q	0.997	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO47	HGNC	ENSG00000204952				69	0	0	72	4	5.26316
ERBB2	0	genome.wustl.edu	37	17	37868208	37868208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	17	37868208	37868208	C	T	SNP	ERBB2	ENST00000269571	human	ensembl	74_37	+1	known	missense	c.929	p.S310F	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736				247	0	0	199	61	23.4615
RNF43	0	genome.wustl.edu	37	17	56438233	56438233	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	17	56438233	56438233	G	A	SNP	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	nonsense	c.760	p.Q254*	0.002	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				53	0	0	43	23	34.8485
NEURL4	0	genome.wustl.edu	37	17	7224756	7224756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	17	7224756	7224756	C	T	SNP	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	missense	c.3122	p.R1041H	1.000	smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041				135	0	0	104	9	7.9646
C3P1	0	genome.wustl.edu	37	19	10166291	10166291	+	RNA	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	19	10166291	10166291	G	A	SNP	C3P1	ENST00000495140	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.886	-	-	-	no_errors	C3P1	HGNC	ENSG00000167798				183	0	0	160	30	15.7895
DNASE2	0	genome.wustl.edu	37	19	12986983	12986983	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	19	12986983	12986983	G	A	SNP	DNASE2	ENST00000222219	human	ensembl	74_37	-1	known	missense	c.904	p.P302S	0.074	pfam_DNase_II	pfam_DNase_II	-	no_errors	DNASE2	HGNC	ENSG00000105612				138	0	0	91	22	19.469
DDX39A	0	genome.wustl.edu	37	19	14519889	14519889	+	Silent	SNP	A	A	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	19	14519889	14519889	A	G	SNP	DDX39A	ENST00000242776	human	ensembl	74_37	-1	known	silent	c.1227	p.N409	0.979	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX39A	HGNC	ENSG00000123136				169	0	0	169	16	8.64865
MAP1S	0	genome.wustl.edu	37	19	17837242	17837242	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	19	17837242	17837242	G	A	SNP	MAP1S	ENST00000324096	human	ensembl	74_37	+1	known	missense	c.1049	p.R350H	0.072	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479				13	0	0	7	3	30
ZNF569	0	genome.wustl.edu	37	19	37903787	37903787	+	Silent	SNP	A	A	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	19	37903787	37903787	A	C	SNP	ZNF569	ENST00000316950	human	ensembl	74_37	-1	known	silent	c.1773	p.T591	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437				85	0	0	102	14	12.069
RYR1	0	genome.wustl.edu	37	19	38993186	38993186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	19	38993186	38993186	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.7654	p.R2552C	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				39	0	0	34	3	8.10811
MEIS3	0	genome.wustl.edu	37	19	47912430	47912430	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	19	47912430	47912430	G	A	SNP	MEIS3	ENST00000559524	human	ensembl	74_37	-1	known	nonsense	c.784	p.R262*	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS3	HGNC	ENSG00000105419				76	0	0	62	11	15.0685
PRR12	0	genome.wustl.edu	37	19	50102943	50102943	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	19	50102943	50102943	C	T	SNP	PRR12	ENST00000418929	human	ensembl	74_37	+1	novel	missense	c.4093	p.R1365W	1.000	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464				69	0	0	56	12	17.6471
TSKS	0	genome.wustl.edu	37	19	50247605	50247605	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	19	50247605	50247605	C	A	SNP	TSKS	ENST00000246801	human	ensembl	74_37	-1	known	missense	c.1244	p.G415V	1.000	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467				84	0	0	79	11	12.2222
KDM4B	0	genome.wustl.edu	37	19	5077397	5077397	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	19	5077397	5077397	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	silent	c.696	p.S232	0.416	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663				328	0	0	323	48	12.938
TTN-AS1	0	genome.wustl.edu	37	2	179469651	179469651	+	RNA	SNP	T	T	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	2	179469651	179469651	T	A	SNP	TTN-AS1	ENST00000419746	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.656	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				61	0	0	75	10	11.7647
TTN	0	genome.wustl.edu	37	2	179595379	179595379	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	2	179595379	179595379	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.14149	p.A4717S	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				81	0	0	76	25	24.7525
TTN	0	genome.wustl.edu	37	2	179634998	179634998	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	2	179634998	179634998	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.8430	p.A2810	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				116	0	0	133	12	8.27586
BMPR2	0	genome.wustl.edu	37	2	203383565	203383565	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	2	203383565	203383565	T	A	SNP	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	nonsense	c.642	p.Y214*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				68	0	0	66	15	18.5185
EPHA4	0	genome.wustl.edu	37	2	222291236	222291236	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	2	222291236	222291236	A	C	SNP	EPHA4	ENST00000281821	human	ensembl	74_37	-1	known	missense	c.2794	p.F932V	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106				43	0	0	43	7	14
ATG16L1	0	genome.wustl.edu	37	2	234198933	234198933	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	2	234198933	234198933	T	C	SNP	ATG16L1	ENST00000392017	human	ensembl	74_37	+1	known	missense	c.1364	p.I455T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Autophagy-rel_prot_16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ATG16L1	HGNC	ENSG00000085978				102	0	0	101	49	32.6667
CEBPZ	0	genome.wustl.edu	37	2	37441097	37441097	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	2	37441097	37441097	T	A	SNP	CEBPZ	ENST00000234170	human	ensembl	74_37	-1	known	nonsense	c.2455	p.K819*	1.000	superfamily_ARM-type_fold	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	CEBPZ	HGNC	ENSG00000115816				11	0	0	24	5	17.2414
KIF16B	0	genome.wustl.edu	37	20	16348155	16348155	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	20	16348155	16348155	G	A	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	missense	c.3815	p.T1272I	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				75	0	0	88	6	6.38298
MYH7B	0	genome.wustl.edu	37	20	33586876	33586876	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	20	33586876	33586876	G	A	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	missense	c.4334	p.R1445Q	0.993	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				50	0	0	27	6	18.1818
SRC	0	genome.wustl.edu	37	20	36031241	36031241	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	20	36031241	36031241	C	G	SNP	SRC	ENST00000360723	human	ensembl	74_37	+1	known	missense	c.1378	p.L460V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	SRC	HGNC	ENSG00000197122				113	0	0	111	14	11.2
TSHZ2	0	genome.wustl.edu	37	20	51872113	51872113	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	20	51872113	51872113	T	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2116	p.L706M	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				90	0	0	71	10	12.3457
PHACTR3	0	genome.wustl.edu	37	20	58349321	58349321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	20	58349321	58349321	G	A	SNP	PHACTR3	ENST00000371015	human	ensembl	74_37	+1	known	missense	c.950	p.G317E	0.928	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495				45	0	0	52	5	8.77193
CACNA1I	0	genome.wustl.edu	37	22	40043924	40043924	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	22	40043924	40043924	G	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	silent	c.1560	p.S520	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				54	0	0	60	6	9.09091
SBF1	0	genome.wustl.edu	37	22	50901807	50901807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	22	50901807	50901807	C	T	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.1804	p.A602T	0.979	pfam_SBF2	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				19	0	0	15	5	25
KIAA2018	0	genome.wustl.edu	37	3	113379292	113379292	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	113379292	113379292	C	A	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.1237	p.D413Y	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				52	0	0	88	14	13.7255
ZBTB20	0	genome.wustl.edu	37	3	114070254	114070254	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	114070254	114070254	C	A	SNP	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	missense	c.671	p.S224I	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				115	0	0	105	15	12.5
CNTN6	0	genome.wustl.edu	37	3	1371584	1371584	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	1371584	1371584	G	T	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.1329	p.W443C	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				45	0	0	31	8	20.5128
PLSCR2	0	genome.wustl.edu	37	3	146173071	146173071	+	Silent	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	146173071	146173071	T	C	SNP	PLSCR2	ENST00000336685	human	ensembl	74_37	-1	known	silent	c.276	p.R92	1.000	pfam_Scramblase	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR2	HGNC	ENSG00000163746				71	0	0	82	8	8.88889
PIK3CA	0	genome.wustl.edu	37	3	178916944	178916944	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	178916944	178916944	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.331	p.K111E	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				67	0	0	69	9	11.5385
CHRD	0	genome.wustl.edu	37	3	184101337	184101337	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	184101337	184101337	G	A	SNP	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	silent	c.1347	p.E449	1.000	pfam_CHRD,smart_CHRD,pirsf_Chordin,pfscan_CHRD	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539				86	0	0	82	10	10.8696
AHSG	0	genome.wustl.edu	37	3	186330959	186330959	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	186330959	186330959	T	G	SNP	AHSG	ENST00000411641	human	ensembl	74_37	+1	known	missense	c.29	p.L10R	0.203	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	AHSG	HGNC	ENSG00000145192				51	0	0	57	5	8.06452
ACAP2	0	genome.wustl.edu	37	3	195000014	195000014	+	RNA	SNP	T	T	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	195000014	195000014	T	A	SNP	ACAP2	ENST00000472860	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.025	-	-	-	no_errors	ACAP2	HGNC	ENSG00000114331				15	0	0	17	5	22.7273
LRRC3B	0	genome.wustl.edu	37	3	26751343	26751343	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	26751343	26751343	A	T	SNP	LRRC3B	ENST00000396641	human	ensembl	74_37	+1	known	missense	c.180	p.R60S	1.000	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC3B	HGNC	ENSG00000179796				69	0	0	56	4	6.66667
ZNF620	0	genome.wustl.edu	37	3	40553905	40553905	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	40553905	40553905	C	A	SNP	ZNF620	ENST00000314529	human	ensembl	74_37	+1	known	missense	c.164	p.T55N	0.109	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF620	HGNC	ENSG00000177842				36	0	0	31	2	6.06061
TRAK1	0	genome.wustl.edu	37	3	42251706	42251706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	42251706	42251706	G	A	SNP	TRAK1	ENST00000341421	human	ensembl	74_37	+1	known	missense	c.2018	p.R673H	1.000	NULL	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK1	HGNC	ENSG00000182606				337	0	0	300	42	12.2807
FEZF2	0	genome.wustl.edu	37	3	62358293	62358293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	62358293	62358293	G	A	SNP	FEZF2	ENST00000283268	human	ensembl	74_37	-1	known	missense	c.251	p.P84L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266				48	0	0	43	7	14
UVSSA	0	genome.wustl.edu	37	4	1369243	1369243	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	4	1369243	1369243	G	A	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	silent	c.1380	p.A460	0.915	NULL	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				142	0	0	113	18	13.7405
NOP14	0	genome.wustl.edu	37	4	2952857	2952857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	4	2952857	2952857	C	T	SNP	NOP14	ENST00000416614	human	ensembl	74_37	-1	known	missense	c.986	p.R329H	0.581	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269				155	0	0	181	29	13.8095
KIAA1211	0	genome.wustl.edu	37	4	57181587	57181587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	4	57181587	57181587	G	A	SNP	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	missense	c.1919	p.R640Q	0.004	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265				43	0	0	30	5	14.2857
UGT2B17	0	genome.wustl.edu	37	4	69431299	69431299	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	4	69431299	69431299	G	A	SNP	UGT2B17	ENST00000317746	human	ensembl	74_37	-1	known	silent	c.864	p.P288	0.278	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B17	HGNC	ENSG00000197888				55	0	0	50	19	27.5362
ATOH1	0	genome.wustl.edu	37	4	94750923	94750923	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	4	94750923	94750923	G	A	SNP	ATOH1	ENST00000306011	human	ensembl	74_37	+1	known	silent	c.846	p.A282	0.666	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ATOH1	HGNC	ENSG00000172238				104	0	0	92	8	8
PCDHA3	0	genome.wustl.edu	37	5	140182233	140182233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	140182233	140182233	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	missense	c.1451	p.A484V	0.067	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				240	0	0	200	40	16.6667
PCDHA3	0	genome.wustl.edu	37	5	140183035	140183035	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	140183035	140183035	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	silent	c.2253	p.S751	0.040	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				182	0	0	138	25	15.3374
ARHGEF37	0	genome.wustl.edu	37	5	148977438	148977438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	148977438	148977438	C	T	SNP	ARHGEF37	ENST00000333677	human	ensembl	74_37	+1	known	missense	c.106	p.R36W	0.007	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF37	HGNC	ENSG00000183111				36	0	0	28	7	20
KIF4B	0	genome.wustl.edu	37	5	154395311	154395311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	154395311	154395311	G	A	SNP	KIF4B	ENST00000435029	human	ensembl	74_37	+1	known	missense	c.1892	p.R631H	0.422	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650				86	0	0	141	20	12.4224
CREBRF	0	genome.wustl.edu	37	5	172517427	172517427	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	172517427	172517427	G	A	SNP	CREBRF	ENST00000540014	human	ensembl	74_37	+1	known	missense	c.245	p.G82D	0.987	NULL	NULL	-	no_errors	CREBRF	HGNC	ENSG00000164463				43	0	0	59	11	15.7143
FLT4	0	genome.wustl.edu	37	5	180056397	180056397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	180056397	180056397	G	A	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.847	p.R283C	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				80	0	0	42	11	20.7547
PRDM9	0	genome.wustl.edu	37	5	23510114	23510114	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	23510114	23510114	A	C	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.279	p.E93D	1.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				51	0	0	43	7	14
PRDM9	0	genome.wustl.edu	37	5	23522456	23522456	+	Silent	SNP	A	A	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	23522456	23522456	A	T	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	silent	c.552	p.R184	0.326	pfam_SSXRD_motif	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				130	0	0	134	9	6.29371
CDH9	0	genome.wustl.edu	37	5	26902673	26902673	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	26902673	26902673	A	C	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.1165	p.L389V	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				65	0	0	66	13	16.4557
OSMR	0	genome.wustl.edu	37	5	38876363	38876363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	38876363	38876363	G	A	SNP	OSMR	ENST00000274276	human	ensembl	74_37	+1	known	missense	c.134	p.R45H	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623				51	0	0	61	10	14.0845
NBPF22P	0	genome.wustl.edu	37	5	85578578	85578578	+	RNA	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	85578578	85578578	G	A	SNP	NBPF22P	ENST00000590707	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	NBPF22P	HGNC	ENSG00000205449				100	0	0	78	13	14.2857
GPR98	0	genome.wustl.edu	37	5	90059209	90059209	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	5	90059209	90059209	G	A	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.12208	p.V4070I	0.787	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				29	0	0	43	6	12.2449
SYCP2L	0	genome.wustl.edu	37	6	10894339	10894339	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	6	10894339	10894339	C	T	SNP	SYCP2L	ENST00000283141	human	ensembl	74_37	+1	known	nonsense	c.238	p.Q80*	0.855	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157				44	0	0	61	15	19.7368
SOGA3	0	genome.wustl.edu	37	6	127796968	127796968	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	6	127796968	127796968	G	A	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.2203	p.R735C	1.000	NULL	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				198	0	0	134	26	16.25
HIVEP2	0	genome.wustl.edu	37	6	143090937	143090937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	6	143090937	143090937	C	T	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	missense	c.4939	p.V1647M	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				70	0	0	76	13	14.6067
TTLL2	0	genome.wustl.edu	37	6	167753692	167753692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	6	167753692	167753692	G	A	SNP	TTLL2	ENST00000239587	human	ensembl	74_37	+1	known	missense	c.304	p.V102I	0.953	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL2	HGNC	ENSG00000120440				49	0	0	42	25	37.3134
HIST1H2BC	0	genome.wustl.edu	37	6	26123998	26123998	+	Silent	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	6	26123998	26123998	C	A	SNP	HIST1H2BC	ENST00000314332	human	ensembl	74_37	-1	known	silent	c.135	p.V45	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596				253	0	0	236	26	9.92366
HSPA1L	0	genome.wustl.edu	37	6	31778313	31778313	+	Silent	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	6	31778313	31778313	C	T	SNP	HSPA1L	ENST00000375654	human	ensembl	74_37	-1	known	silent	c.1437	p.T479	0.999	pfam_Hsp_70_fam,prints_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1L	HGNC	ENSG00000204390				138	0	0	120	16	11.7647
TNXB	0	genome.wustl.edu	37	6	32010312	32010312	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	6	32010312	32010312	T	C	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.12124	p.S4042G	0.998	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				53	0	0	44	4	8.33333
COL11A2	0	genome.wustl.edu	37	6	33136332	33136332	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	6	33136332	33136332	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	silent	c.3924	p.T1308	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				50	0	0	42	7	14.2857
PTCHD4	0	genome.wustl.edu	37	6	48036017	48036017	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	6	48036017	48036017	C	A	SNP	PTCHD4	ENST00000339488	human	ensembl	74_37	-1	known	missense	c.375	p.L125F	1.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD4	HGNC	ENSG00000244694				135	0	0	112	19	14.5038
HMGCLL1	0	genome.wustl.edu	37	6	55304324	55304324	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	6	55304324	55304324	C	T	SNP	HMGCLL1	ENST00000398661	human	ensembl	74_37	-1	known	missense	c.919	p.G307R	1.000	pfam_PYR_CT,pfscan_PYR_CT	pfam_PYR_CT,pfscan_PYR_CT	-	no_errors	HMGCLL1	HGNC	ENSG00000146151				83	0	0	88	12	12
COL9A1	0	genome.wustl.edu	37	6	70990553	70990553	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	6	70990553	70990553	G	T	SNP	COL9A1	ENST00000357250	human	ensembl	74_37	-1	known	missense	c.937	p.P313T	0.992	pfam_Collagen	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280				26	0	0	31	4	11.4286
RELN	0	genome.wustl.edu	37	7	103292224	103292224	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	7	103292224	103292224	T	G	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.1776	p.E592D	0.998	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				43	0	0	31	4	11.4286
SMO	0	genome.wustl.edu	37	7	128845479	128845479	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	7	128845479	128845479	C	T	SNP	SMO	ENST00000249373	human	ensembl	74_37	+1	known	missense	c.776	p.S259L	1.000	pfam_Frizzled,pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602				140	0	0	112	14	11.1111
MGAM	0	genome.wustl.edu	37	7	141759688	141759688	+	Silent	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	7	141759688	141759688	T	C	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	silent	c.3981	p.P1327	0.972	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				17	0	0	15	4	21.0526
PDE1C	0	genome.wustl.edu	37	7	31862790	31862790	+	Silent	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	7	31862790	31862790	C	T	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	silent	c.1479	p.P493	0.026	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678				67	0	0	92	5	5.15464
GLI3	0	genome.wustl.edu	37	7	42007484	42007484	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	7	42007484	42007484	C	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.2141	p.S714I	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				130	0	0	136	25	15.528
HECW1	0	genome.wustl.edu	37	7	43503377	43503377	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	7	43503377	43503377	G	T	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	nonsense	c.2770	p.E924*	0.992	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				156	0	0	168	14	7.69231
MYO1G	0	genome.wustl.edu	37	7	45005235	45005235	+	Splice_Site	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	7	45005235	45005235	C	A	SNP	MYO1G	ENST00000258787	human	ensembl	74_37	-1	known	splice_site	c.2381+1	e17+1	1.000	-	-	-	no_errors	MYO1G	HGNC	ENSG00000136286				89	0	0	75	14	15.7303
RNF19A	0	genome.wustl.edu	37	8	101300277	101300277	+	Silent	SNP	T	T	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	8	101300277	101300277	T	A	SNP	RNF19A	ENST00000341084	human	ensembl	74_37	-1	known	silent	c.126	p.R42	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677				56	0	0	48	21	30.4348
CSMD3	0	genome.wustl.edu	37	8	113933924	113933924	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	8	113933924	113933924	T	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.1565	p.K522R	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				82	0	0	74	19	20.4301
LOXL2	0	genome.wustl.edu	37	8	23225708	23225708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	8	23225708	23225708	C	T	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	missense	c.157	p.V53M	0.336	superfamily_Srcr_rcpt-rel	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				95	0	0	77	12	13.4831
MMP16	0	genome.wustl.edu	37	8	89209420	89209420	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	8	89209420	89209420	T	G	SNP	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	missense	c.248	p.N83T	1.000	pirsf_Pept_M10A_Metazoans,pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103				39	0	0	45	8	15.0943
ADAMTSL2	0	genome.wustl.edu	37	9	136409627	136409627	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	9	136409627	136409627	C	T	SNP	ADAMTSL2	ENST00000393061	human	ensembl	74_37	+1	known	nonsense	c.1045	p.R349*	0.983	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859				130	0	0	109	20	15.5039
OLFM1	0	genome.wustl.edu	37	9	138012012	138012012	+	Silent	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	9	138012012	138012012	C	T	SNP	OLFM1	ENST00000371793	human	ensembl	74_37	+1	known	silent	c.1446	p.S482	0.334	NULL	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM1	HGNC	ENSG00000130558				72	0	0	86	7	7.52688
SPATA31A6	0	genome.wustl.edu	37	9	43626720	43626720	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	9	43626720	43626720	T	G	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.1967	p.K656T	0.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				239	0	0	267	28	9.49153
H2BFWT	0	genome.wustl.edu	37	X	103268176	103268176	+	Silent	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	103268176	103268176	C	T	SNP	H2BFWT	ENST00000217926	human	ensembl	74_37	-1	known	silent	c.57	p.S19	0.000	NULL	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	H2BFWT	HGNC	ENSG00000123569				42	0	0	45	6	11.7647
TBC1D8B	0	genome.wustl.edu	37	X	106066491	106066491	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	106066491	106066491	C	T	SNP	TBC1D8B	ENST00000357242	human	ensembl	74_37	+1	known	missense	c.622	p.L208F	1.000	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138				40	0	0	50	4	7.40741
KIAA1210	0	genome.wustl.edu	37	X	118222008	118222008	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	118222008	118222008	T	C	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	missense	c.3185	p.K1062R	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423				162	0	0	157	16	9.24855
FRMPD4	0	genome.wustl.edu	37	X	12735634	12735634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	12735634	12735634	C	T	SNP	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	missense	c.2689	p.R897W	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933				118	0	0	129	27	17.3077
IGSF1	0	genome.wustl.edu	37	X	130412056	130412056	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	130412056	130412056	T	A	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.2109	p.E703D	0.694	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				116	0	0	123	12	8.88889
GPR112	0	genome.wustl.edu	37	X	135430802	135430802	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	135430802	135430802	T	C	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.4937	p.L1646P	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				179	0	0	251	35	12.2378
SLITRK2	0	genome.wustl.edu	37	X	144903992	144903992	+	Silent	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	144903992	144903992	T	C	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	silent	c.49	p.L17	1.000	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985				50	0	0	63	4	5.97015
PLXNB3	0	genome.wustl.edu	37	X	153040317	153040317	+	Silent	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	153040317	153040317	C	T	SNP	PLXNB3	ENST00000538282	human	ensembl	74_37	+1	known	silent	c.2817	p.G939	0.000	NULL	pfam_IPT,pfam_Plexin_repeat,superfamily_Ig_E-set,superfamily_Plexin-like_fold,superfamily_Semap_dom,smart_Plexin-like_fold,smart_IPT	-	no_errors	PLXNB3	HGNC	ENSG00000198753				134	0	0	126	24	16
L1CAM	0	genome.wustl.edu	37	X	153129810	153129810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	153129810	153129810	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	missense	c.3295	p.R1099W	0.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				257	1	0.387597	252	28	10
PCYT1B	0	genome.wustl.edu	37	X	24597470	24597470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	24597470	24597470	C	T	SNP	PCYT1B	ENST00000379144	human	ensembl	74_37	-1	known	missense	c.671	p.G224E	1.000	NULL	pfam_Cyt_trans-like,tigrfam_Cyt_trans-like	-	no_errors	PCYT1B	HGNC	ENSG00000102230				150	0	0	173	16	8.46561
FAM47A	0	genome.wustl.edu	37	X	34148983	34148983	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	34148983	34148983	G	A	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	silent	c.1413	p.P471	0.026	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				111	0	0	114	22	16.1765
TMEM47	0	genome.wustl.edu	37	X	34657453	34657453	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	34657453	34657453	A	G	SNP	TMEM47	ENST00000275954	human	ensembl	74_37	-1	known	missense	c.278	p.L93P	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	TMEM47	HGNC	ENSG00000147027				16	0	0	22	3	12
RGN	0	genome.wustl.edu	37	X	46949185	46949185	+	Silent	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	46949185	46949185	T	C	SNP	RGN	ENST00000336169	human	ensembl	74_37	+1	known	silent	c.357	p.A119	0.026	pfam_SGL	pfam_SGL,prints_SMP-30,prints_Regucalcin	-	no_errors	RGN	HGNC	ENSG00000130988				62	0	0	58	6	9.375
ELK1	0	genome.wustl.edu	37	X	47509899	47509899	+	RNA	SNP	C	C	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	47509899	47509899	C	A	SNP	ELK1	ENST00000468956	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ELK1	HGNC	ENSG00000126767				51	0	0	54	7	11.4754
PRICKLE3	0	genome.wustl.edu	37	X	49032336	49032336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	49032336	49032336	G	A	SNP	PRICKLE3	ENST00000376317	human	ensembl	74_37	-1	known	missense	c.1534	p.R512C	0.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211				70	0	0	78	8	9.30233
ALAS2	0	genome.wustl.edu	37	X	55050237	55050237	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	55050237	55050237	T	C	SNP	ALAS2	ENST00000330807	human	ensembl	74_37	-1	known	missense	c.368	p.E123G	0.001	NULL	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578				46	0	0	39	5	11.3636
CITED1	0	genome.wustl.edu	37	X	71521802	71521802	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	71521802	71521802	G	T	SNP	CITED1	ENST00000431381	human	ensembl	74_37	-1	known	missense	c.431	p.A144E	0.064	pfam_CITED	pfam_CITED	-	no_errors	CITED1	HGNC	ENSG00000125931				46	0	0	43	4	8.51064
KAL1	0	genome.wustl.edu	37	X	8538633	8538633	+	Silent	SNP	G	G	T			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	8538633	8538633	G	T	SNP	KAL1	ENST00000262648	human	ensembl	74_37	-1	known	silent	c.969	p.I323	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_WAP-type_4-diS_core	-	no_errors	KAL1	HGNC	ENSG00000011201				45	0	0	34	6	15
KAL1	0	genome.wustl.edu	37	X	8538634	8538634	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	8538634	8538634	A	G	SNP	KAL1	ENST00000262648	human	ensembl	74_37	-1	known	missense	c.968	p.I323T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_WAP-type_4-diS_core	-	no_errors	KAL1	HGNC	ENSG00000011201				43	0	0	34	5	12.8205
TBL1X	0	genome.wustl.edu	37	X	9622286	9622286	+	Silent	SNP	G	G	A			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	9622286	9622286	G	A	SNP	TBL1X	ENST00000217964	human	ensembl	74_37	+1	known	silent	c.135	p.S45	0.019	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849				54	0	0	52	6	10.3448
SHROOM2	0	genome.wustl.edu	37	X	9900503	9900503	+	Silent	SNP	A	A	G			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	9900503	9900503	A	G	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	silent	c.3180	p.P1060	0.001	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				46	0	0	32	3	8.57143
PTCH2	0	genome.wustl.edu	37	1	45292286	45292286	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	1	45292286	45292286	G	-	DEL	PTCH2	ENST00000372192	human	ensembl	74_37	-1	known	frame_shift_del	c.2850	p.F951fs	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH2	HGNC	ENSG00000117425				57	0	0	45	6	11.7647
OR4C6	0	genome.wustl.edu	37	11	55432816	55432816	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	11	55432816	55432816	T	-	DEL	OR4C6	ENST00000314259	human	ensembl	74_37	+1	known	frame_shift_del	c.174	p.L61fs	0.052	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C6	HGNC	ENSG00000181903				136	0	0	136	15	9.93377
ENSG00000204584	0	genome.wustl.edu	37	17	47925055	47925056	+	RNA	DEL	AC	AC	-			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	17	47925055	47925056	AC	-	DEL	ENSG00000204584	ENST00000376609	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.072:0.089	-	-	-	no_errors	RP11-304F15.3	Clone_based_vega_gene	ENSG00000204584				10	0	0	4	2	33.3333
CCDC178	0	genome.wustl.edu	37	18	30913143	30913143	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	18	30913143	30913143	T	-	DEL	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	frame_shift_del	c.874	p.M292fs	0.000	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				36	0	0	36	5	12.1951
KCNIP3	0	genome.wustl.edu	37	2	96049918	96049919	+	RNA	DEL	AC	AC	-			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	2	96049918	96049919	AC	-	DEL	KCNIP3	ENST00000377181	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	KCNIP3	HGNC	ENSG00000115041				13	0	0	10	5	33.3333
TGFBR2	0	genome.wustl.edu	37	3	30691807	30691807	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	3	30691807	30691807	C	-	DEL	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	frame_shift_del	c.384	p.K130fs	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513				104	0	0	89	24	21.2389
MAP7D3	0	genome.wustl.edu	37	X	135310817	135310824	+	Frame_Shift_Del	DEL	CTCTTTTT	CTCTTTTT	-			TCGA-BR-8588-01A-11D-2394-08	TCGA-BR-8588-10A-01D-2394-08	CTCTTTTT	CTCTTTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0fbb26a6-0430-47b7-8f85-9166e8b4130b	907aa997-170c-40e5-9e28-6d93395e5ae2	X	135310817	135310824	CTCTTTTT	-	DEL	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	frame_shift_del	c.1797_1790	p.E597fs	0.003:0.041:0.052:0.048:0.029:0.007:0.000:0.000	pfam_MAP7	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				47	0	0	73	9	10.9756
