Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
RTCA	0	genome.wustl.edu	37	1	100731778	100731778	+	RNA	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	100731778	100731778	C	A	SNP	RTCA	ENST00000498617	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RTCA	HGNC	ENSG00000137996				12	0	0	6	5	45.4545
KIF1B	0	genome.wustl.edu	37	1	10420986	10420986	+	Splice_Site	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	10420986	10420986	G	T	SNP	KIF1B	ENST00000263934	human	ensembl	74_37	+1	known	splice_site	c.3918-1	e36-1	1.000	-	-	-	no_errors	KIF1B	HGNC	ENSG00000054523				93	0	0	61	4	6.15385
DFFA	0	genome.wustl.edu	37	1	10521701	10521701	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	10521701	10521701	T	A	SNP	DFFA	ENST00000377038	human	ensembl	74_37	-1	known	missense	c.842	p.K281M	0.667	pirsf_DNA_fragmentation_factor_asu	pfam_DNA_fragmentation_mid_dom,pfam_CIDE-N_dom,smart_CIDE-N_dom,pirsf_DNA_fragmentation_factor_asu,pfscan_CIDE-N_dom	-	no_errors	DFFA	HGNC	ENSG00000160049				125	0	0	83	24	22.4299
CASZ1	0	genome.wustl.edu	37	1	10705023	10705023	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	10705023	10705023	T	C	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	silent	c.3819	p.A1273	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				147	0	0	115	39	25.3247
VAV3	0	genome.wustl.edu	37	1	108115957	108115957	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	108115957	108115957	T	C	SNP	VAV3	ENST00000370056	human	ensembl	74_37	-1	known	missense	c.2540	p.E847G	1.000	smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215				35	0	0	32	13	28.8889
CELSR2	0	genome.wustl.edu	37	1	109812696	109812696	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	109812696	109812696	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.7249	p.A2417T	0.529	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				146	0	0	117	33	22
CELSR2	0	genome.wustl.edu	37	1	109813580	109813580	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	109813580	109813580	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	silent	c.7515	p.Y2505	0.982	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				265	0	0	188	76	28.7879
GNAI3	0	genome.wustl.edu	37	1	110091425	110091425	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	110091425	110091425	A	G	SNP	GNAI3	ENST00000369851	human	ensembl	74_37	+1	known	missense	c.83	p.E28G	1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	-	no_errors	GNAI3	HGNC	ENSG00000065135				18	0	0	17	5	22.7273
PTPN22	0	genome.wustl.edu	37	1	114357544	114357544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	114357544	114357544	G	A	SNP	PTPN22	ENST00000359785	human	ensembl	74_37	-1	known	missense	c.2407	p.P803S	0.133	pirsf_Non-rcpt_Tyr_Pase_8/22	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Non-rcpt_Tyr_Pase_8/22,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN22	HGNC	ENSG00000134242				51	0	0	34	7	17.0732
CSDE1	0	genome.wustl.edu	37	1	115276643	115276643	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	115276643	115276643	G	A	SNP	CSDE1	ENST00000369530	human	ensembl	74_37	-1	known	silent	c.723	p.G241	0.997	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307				62	0	0	53	4	7.01754
SDF4	0	genome.wustl.edu	37	1	1154278	1154278	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	1154278	1154278	G	A	SNP	SDF4	ENST00000360001	human	ensembl	74_37	-1	known	missense	c.607	p.R203C	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	SDF4	HGNC	ENSG00000078808				152	0	0	135	41	23.2955
TSPAN2	0	genome.wustl.edu	37	1	115604798	115604798	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	115604798	115604798	C	T	SNP	TSPAN2	ENST00000369516	human	ensembl	74_37	-1	known	silent	c.228	p.G76	0.450	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN2	HGNC	ENSG00000134198				11	0	0	7	5	41.6667
PTCHD2	0	genome.wustl.edu	37	1	11561152	11561152	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	11561152	11561152	G	T	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.103	p.G35W	0.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				89	0	0	62	27	30.3371
PTCHD2	0	genome.wustl.edu	37	1	11561770	11561770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	11561770	11561770	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.721	p.A241T	0.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				14	0	0	15	4	21.0526
B3GALT6	0	genome.wustl.edu	37	1	1168284	1168284	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	1168284	1168284	A	G	SNP	B3GALT6	ENST00000379198	human	ensembl	74_37	+1	known	missense	c.626	p.Y209C	1.000	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT6	HGNC	ENSG00000176022				11	0	0	4	3	42.8571
FBXO6	0	genome.wustl.edu	37	1	11733437	11733437	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	11733437	11733437	A	G	SNP	FBXO6	ENST00000376753	human	ensembl	74_37	+1	known	missense	c.613	p.I205V	0.261	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom,superfamily_Galactose-bd-like,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom,pfscan_F-box-assoc_dom	-	no_errors	FBXO6	HGNC	ENSG00000116663				110	0	0	92	12	11.5385
ZNF697	0	genome.wustl.edu	37	1	120165750	120165750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	120165750	120165750	C	T	SNP	ZNF697	ENST00000421812	human	ensembl	74_37	-1	known	missense	c.1216	p.E406K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF697	HGNC	ENSG00000143067				16	0	0	16	6	27.2727
ZNF697	0	genome.wustl.edu	37	1	120165980	120165980	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	120165980	120165980	C	G	SNP	ZNF697	ENST00000421812	human	ensembl	74_37	-1	known	missense	c.986	p.S329T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF697	HGNC	ENSG00000143067				8	0	0	5	4	44.4444
PHGDH	0	genome.wustl.edu	37	1	120279828	120279828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	120279828	120279828	G	A	SNP	PHGDH	ENST00000369409	human	ensembl	74_37	+1	known	missense	c.884	p.C295Y	1.000	pfam_D-isomer_2_OHA_DH_cat_dom,tigrfam_D-3-Phosphoglycerate_DH	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,tigrfam_D-3-Phosphoglycerate_DH	-	no_errors	PHGDH	HGNC	ENSG00000092621				51	0	0	32	14	30.4348
VPS13D	0	genome.wustl.edu	37	1	12337865	12337865	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	12337865	12337865	T	C	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.4220	p.I1407T	1.000	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				116	0	0	89	27	23.2759
DHRS3	0	genome.wustl.edu	37	1	12628448	12628448	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	12628448	12628448	A	T	SNP	DHRS3	ENST00000376223	human	ensembl	74_37	-1	known	missense	c.830	p.L277H	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS3	HGNC	ENSG00000162496				149	0	0	117	47	28.6585
DVL1	0	genome.wustl.edu	37	1	1277817	1277817	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	1277817	1277817	C	T	SNP	DVL1	ENST00000378888	human	ensembl	74_37	-1	known	silent	c.288	p.T96	0.197	NULL	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam	-	no_errors	DVL1	HGNC	ENSG00000107404				19	0	0	12	5	29.4118
PRAMEF1	0	genome.wustl.edu	37	1	12853640	12853640	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	12853640	12853640	G	A	SNP	PRAMEF1	ENST00000332296	human	ensembl	74_37	+1	known	silent	c.264	p.L88	0.009	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721				187	0	0	142	35	19.774
PRDM2	0	genome.wustl.edu	37	1	14105136	14105136	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	14105136	14105136	A	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.846	p.E282D	0.965	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				61	0	0	64	5	7.24638
ENSG00000203849	0	genome.wustl.edu	37	1	142713751	142713751	+	RNA	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	142713751	142713751	A	C	SNP	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.105	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849				33	0	0	24	10	29.4118
PDE4DIP	0	genome.wustl.edu	37	1	144873923	144873923	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	144873923	144873923	C	A	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.5034	p.L1678F	0.991	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				539	0	0	411	63	13.2911
BCL9	0	genome.wustl.edu	37	1	147090821	147090821	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	147090821	147090821	C	A	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	missense	c.860	p.P287H	0.755	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				95	0	0	96	26	21.3115
BCL9	0	genome.wustl.edu	37	1	147096167	147096167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	147096167	147096167	G	A	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	missense	c.3688	p.G1230R	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				135	0	0	97	24	19.8347
TARS2	0	genome.wustl.edu	37	1	150463946	150463946	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	150463946	150463946	A	G	SNP	TARS2	ENST00000369064	human	ensembl	74_37	+1	known	missense	c.589	p.R197G	0.990	superfamily_Thr/Ala-tRNA-synth_IIc_edit,tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,pfscan_aa-tRNA-synth_II,prints_Thr-tRNA-ligase_IIa,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS2	HGNC	ENSG00000143374				132	0	0	108	33	23.4043
SEMA6C	0	genome.wustl.edu	37	1	151112138	151112138	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	151112138	151112138	T	C	SNP	SEMA6C	ENST00000368913	human	ensembl	74_37	-1	known	silent	c.273	p.E91	0.999	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6C	HGNC	ENSG00000143434				66	0	0	41	16	28.0702
ZNF687	0	genome.wustl.edu	37	1	151261038	151261038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	151261038	151261038	G	A	SNP	ZNF687	ENST00000324048	human	ensembl	74_37	+1	known	missense	c.2150	p.R717H	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373				112	0	0	77	37	32.4561
PSMB4	0	genome.wustl.edu	37	1	151373007	151373007	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	151373007	151373007	C	T	SNP	PSMB4	ENST00000290541	human	ensembl	74_37	+1	known	missense	c.437	p.S146L	1.000	pfam_Proteasome_sua/b,pirsf_Proteasome_endopept_cplx_B	pfam_Proteasome_sua/b,pirsf_Proteasome_endopept_cplx_B	-	no_errors	PSMB4	HGNC	ENSG00000159377				327	1	0.304878	169	66	28.0851
SNX27	0	genome.wustl.edu	37	1	151611552	151611552	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	151611552	151611552	T	C	SNP	SNX27	ENST00000368843	human	ensembl	74_37	+1	known	missense	c.500	p.V167A	1.000	superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_PDZ,pfam_Ras-assoc,superfamily_Phox,superfamily_PDZ,smart_PDZ,smart_Phox,pfscan_PDZ,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX27	HGNC	ENSG00000143376				78	0	0	46	22	32.3529
NBPF18P	0	genome.wustl.edu	37	1	151993647	151993647	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	151993647	151993647	C	T	SNP	NBPF18P	ENST00000432386	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	NBPF18P	HGNC	ENSG00000229021				103	0	0	54	17	23.9437
FLG2	0	genome.wustl.edu	37	1	152326237	152326237	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	152326237	152326237	C	G	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.4025	p.R1342T	0.010	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				260	0	0	167	64	27.7056
SPRR1A	0	genome.wustl.edu	37	1	152957933	152957933	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	152957933	152957933	C	T	SNP	SPRR1A	ENST00000307122	human	ensembl	74_37	+1	known	missense	c.227	p.T76M	0.000	pfam_Cornifin	pfam_Cornifin	-	no_errors	SPRR1A	HGNC	ENSG00000169474				165	0	0	138	38	21.5909
PGLYRP4	0	genome.wustl.edu	37	1	153317826	153317826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	153317826	153317826	G	A	SNP	PGLYRP4	ENST00000359650	human	ensembl	74_37	-1	known	missense	c.172	p.R58C	0.273	superfamily_Amidase_domain,smart_PGRP_domain_met/bac	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP4	HGNC	ENSG00000163218				168	0	0	139	33	19.186
INTS3	0	genome.wustl.edu	37	1	153735839	153735839	+	Splice_Site	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	153735839	153735839	G	A	SNP	INTS3	ENST00000318967	human	ensembl	74_37	+1	known	splice_site	c.1766+1	e16+1	1.000	-	-	-	no_errors	INTS3	HGNC	ENSG00000143624				137	0	0	97	16	14.1593
DENND4B	0	genome.wustl.edu	37	1	153902880	153902880	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	153902880	153902880	G	T	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	missense	c.4384	p.L1462M	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				127	0	0	102	7	6.42202
NUP210L	0	genome.wustl.edu	37	1	154026855	154026855	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	154026855	154026855	T	C	SNP	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	missense	c.3332	p.Q1111R	1.000	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				102	0	0	65	17	20.7317
MSTO1	0	genome.wustl.edu	37	1	155583916	155583916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	155583916	155583916	C	T	SNP	MSTO1	ENST00000245564	human	ensembl	74_37	+1	known	missense	c.1565	p.A522V	0.000	NULL	pfam_Misato_II_tubulin-like,pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase	-	no_errors	MSTO1	HGNC	ENSG00000125459				39	0	0	17	3	15
CD1C	0	genome.wustl.edu	37	1	158263068	158263068	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	158263068	158263068	T	A	SNP	CD1C	ENST00000368170	human	ensembl	74_37	+1	known	missense	c.956	p.L319H	0.055	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1C	HGNC	ENSG00000158481				182	0	0	168	19	10.1604
OR6K6	0	genome.wustl.edu	37	1	158725149	158725149	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	158725149	158725149	C	A	SNP	OR6K6	ENST00000368144	human	ensembl	74_37	+1	known	missense	c.544	p.L182I	0.133	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433				116	0	0	77	22	22.2222
PEA15	0	genome.wustl.edu	37	1	160183419	160183419	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	160183419	160183419	C	T	SNP	PEA15	ENST00000488858	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	PEA15	HGNC	ENSG00000162734				12	0	0	5	2	28.5714
COPA	0	genome.wustl.edu	37	1	160293315	160293315	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	160293315	160293315	G	A	SNP	COPA	ENST00000368069	human	ensembl	74_37	-1	known	silent	c.612	p.H204	0.991	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				40	0	0	28	10	26.3158
OLFML2B	0	genome.wustl.edu	37	1	161953870	161953870	+	Silent	SNP	G	G	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	161953870	161953870	G	C	SNP	OLFML2B	ENST00000294794	human	ensembl	74_37	-1	known	silent	c.1848	p.G616	0.994	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_NA-bd_OB-fold,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745				82	0	0	74	32	30.1887
C1orf226	0	genome.wustl.edu	37	1	162351994	162351994	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	162351994	162351994	G	A	SNP	C1orf226	ENST00000426197	human	ensembl	74_37	+1	known	nonsense	c.432	p.W144*	0.115	NULL	NULL	-	no_errors	C1orf226	HGNC	ENSG00000239887				9	0	0	5	5	50
SPEN	0	genome.wustl.edu	37	1	16255775	16255775	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	16255775	16255775	G	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.3040	p.V1014M	0.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				84	0	0	62	8	11.4286
DDR2	0	genome.wustl.edu	37	1	162722911	162722911	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	162722911	162722911	T	G	SNP	DDR2	ENST00000367921	human	ensembl	74_37	+1	known	missense	c.109	p.S37A	1.000	superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733				98	0	0	90	13	12.6214
EPHA2	0	genome.wustl.edu	37	1	16460035	16460035	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	16460035	16460035	A	G	SNP	EPHA2	ENST00000358432	human	ensembl	74_37	-1	known	missense	c.1805	p.L602S	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627				89	0	0	65	6	8.4507
LRRC52	0	genome.wustl.edu	37	1	165514113	165514113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	165514113	165514113	G	A	SNP	LRRC52	ENST00000294818	human	ensembl	74_37	+1	known	missense	c.580	p.D194N	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC52	HGNC	ENSG00000162763				186	0	0	139	38	21.4689
NADK	0	genome.wustl.edu	37	1	1685059	1685059	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	1685059	1685059	T	C	SNP	NADK	ENST00000344463	human	ensembl	74_37	-1	known	silent	c.1566	p.T522	0.106	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	-	no_errors	NADK	HGNC	ENSG00000008130				29	0	0	24	7	22.5806
MST1L	0	genome.wustl.edu	37	1	17084144	17084144	+	RNA	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	17084144	17084144	T	C	SNP	MST1L	ENST00000455405	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	MST1L	HGNC	ENSG00000186715				390	0	0	360	21	5.51181
SUCO	0	genome.wustl.edu	37	1	172579025	172579025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	172579025	172579025	G	A	SNP	SUCO	ENST00000608151	human	ensembl	74_37	+1	known	missense	c.3847	p.A1283T	0.961	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUCO	HGNC	ENSG00000094975				85	0	0	78	24	23.5294
GAS5	0	genome.wustl.edu	37	1	173833967	173833967	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	173833967	173833967	G	A	SNP	GAS5	ENST00000364822	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GAS5	HGNC	ENSG00000234741				75	0	0	50	18	26.4706
SERPINC1	0	genome.wustl.edu	37	1	173886373	173886373	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	173886373	173886373	C	A	SNP	SERPINC1	ENST00000367698	human	ensembl	74_37	-1	known	missense	c.25	p.V9L	0.000	NULL	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINC1	HGNC	ENSG00000117601				48	0	0	30	14	31.8182
TNN	0	genome.wustl.edu	37	1	175097225	175097225	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	175097225	175097225	G	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	+1	known	missense	c.3103	p.A1035T	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNN	HGNC	ENSG00000120332				103	0	0	70	22	23.913
TNR	0	genome.wustl.edu	37	1	175372558	175372558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	175372558	175372558	C	T	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.694	p.E232K	1.000	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				152	0	0	150	53	26.1084
PAPPA2	0	genome.wustl.edu	37	1	176564578	176564578	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	176564578	176564578	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.1838	p.R613H	1.000	pfam_Notch_dom,superfamily_Notch_dom,smart_Notch_dom	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				104	0	0	80	21	20.7921
BRINP2	0	genome.wustl.edu	37	1	177250123	177250123	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	177250123	177250123	C	A	SNP	BRINP2	ENST00000361539	human	ensembl	74_37	+1	known	missense	c.1811	p.P604H	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP2	HGNC	ENSG00000198797				62	0	0	36	12	25
ARHGEF10L	0	genome.wustl.edu	37	1	17945850	17945850	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	17945850	17945850	G	C	SNP	ARHGEF10L	ENST00000361221	human	ensembl	74_37	+1	known	missense	c.852	p.E284D	0.995	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964				30	0	0	28	10	26.3158
TDRD5	0	genome.wustl.edu	37	1	179632554	179632554	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	179632554	179632554	G	A	SNP	TDRD5	ENST00000444136	human	ensembl	74_37	+1	known	silent	c.2577	p.T859	0.001	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782				69	0	0	36	16	30.7692
QSOX1	0	genome.wustl.edu	37	1	180166065	180166065	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	180166065	180166065	T	G	SNP	QSOX1	ENST00000367602	human	ensembl	74_37	+1	known	missense	c.2137	p.C713G	1.000	NULL	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260				80	0	0	58	21	26.5823
KIAA1614	0	genome.wustl.edu	37	1	180905132	180905132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	180905132	180905132	C	T	SNP	KIAA1614	ENST00000367588	human	ensembl	74_37	+1	known	missense	c.2087	p.T696M	0.000	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835				194	0	0	146	39	21.0811
CACNA1E	0	genome.wustl.edu	37	1	181741239	181741239	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	181741239	181741239	T	C	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.5011	p.S1671P	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				114	0	0	94	26	21.6667
RGL1	0	genome.wustl.edu	37	1	183881389	183881389	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	183881389	183881389	A	G	SNP	RGL1	ENST00000304685	human	ensembl	74_37	+1	known	missense	c.1841	p.E614G	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344				55	0	0	41	18	30.5085
TRMT1L	0	genome.wustl.edu	37	1	185108537	185108537	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	185108537	185108537	C	A	SNP	TRMT1L	ENST00000367506	human	ensembl	74_37	-1	known	missense	c.1284	p.K428N	1.000	pfam_TRM1	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	TRMT1L	HGNC	ENSG00000121486				27	0	0	20	6	23.0769
UBR4	0	genome.wustl.edu	37	1	19404515	19404515	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	19404515	19404515	G	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	silent	c.15279	p.S5093	0.994	NULL	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				67	0	0	45	9	16.6667
UBR4	0	genome.wustl.edu	37	1	19433462	19433462	+	Splice_Site	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	19433462	19433462	T	C	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	splice_site	c.12106-2	e82-2	1.000	-	-	-	no_errors	UBR4	HGNC	ENSG00000127481				42	0	0	25	13	34.2105
ZBTB41	0	genome.wustl.edu	37	1	197169466	197169466	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	197169466	197169466	T	G	SNP	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	missense	c.138	p.E46D	0.874	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888				124	0	0	70	27	27.8351
HTR6	0	genome.wustl.edu	37	1	19992556	19992556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	19992556	19992556	G	A	SNP	HTR6	ENST00000289753	human	ensembl	74_37	+1	known	missense	c.310	p.A104T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT6_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HTR6	HGNC	ENSG00000158748				125	0	0	103	35	25.3623
KIF14	0	genome.wustl.edu	37	1	200522536	200522536	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	200522536	200522536	T	C	SNP	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	missense	c.4927	p.S1643G	0.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				164	0	0	108	37	25.5172
KIF14	0	genome.wustl.edu	37	1	200574463	200574463	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	200574463	200574463	T	A	SNP	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	missense	c.1694	p.D565V	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				70	0	0	54	15	21.7391
C1orf106	0	genome.wustl.edu	37	1	200880605	200880605	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	200880605	200880605	T	C	SNP	C1orf106	ENST00000367342	human	ensembl	74_37	+1	known	silent	c.1239	p.P413	0.000	NULL	pfam_DUF3338	-	no_errors	C1orf106	HGNC	ENSG00000163362				335	0	0	233	83	26.2658
TNNI1	0	genome.wustl.edu	37	1	201380608	201380608	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	201380608	201380608	C	T	SNP	TNNI1	ENST00000336092	human	ensembl	74_37	-1	known	silent	c.333	p.P111	0.001	pfam_Troponin	pfam_Troponin	-	no_errors	TNNI1	HGNC	ENSG00000159173				42	0	0	41	16	28.0702
LGR6	0	genome.wustl.edu	37	1	202249955	202249955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	202249955	202249955	G	A	SNP	LGR6	ENST00000367278	human	ensembl	74_37	+1	known	missense	c.691	p.E231K	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067				112	0	0	71	28	28.2828
OTUD3	0	genome.wustl.edu	37	1	20234193	20234193	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	20234193	20234193	A	G	SNP	OTUD3	ENST00000375120	human	ensembl	74_37	+1	known	missense	c.1151	p.N384S	0.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD3	HGNC	ENSG00000169914				63	0	0	49	15	23.4375
LRRN2	0	genome.wustl.edu	37	1	204588977	204588977	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	204588977	204588977	G	A	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	silent	c.144	p.R48	0.001	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				59	0	0	38	27	41.5385
RASSF5	0	genome.wustl.edu	37	1	206758730	206758730	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	206758730	206758730	C	T	SNP	RASSF5	ENST00000491368	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RASSF5	HGNC	ENSG00000136653				30	0	0	27	8	22.8571
PFKFB2	0	genome.wustl.edu	37	1	207252489	207252489	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	207252489	207252489	C	T	SNP	PFKFB2	ENST00000473310	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PFKFB2	HGNC	ENSG00000123836				34	0	0	23	10	30.303
CR2	0	genome.wustl.edu	37	1	207649616	207649616	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	207649616	207649616	C	T	SNP	CR2	ENST00000367057	human	ensembl	74_37	+1	known	silent	c.2754	p.N918	0.165	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322				100	0	0	57	32	35.9551
PLXNA2	0	genome.wustl.edu	37	1	208390884	208390884	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	208390884	208390884	G	T	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	silent	c.384	p.A128	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				180	0	0	141	36	20.339
KCNH1	0	genome.wustl.edu	37	1	211256135	211256135	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	211256135	211256135	G	T	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	missense	c.545	p.S182Y	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473				156	1	0.636943	97	34	25.9542
PPP2R5A	0	genome.wustl.edu	37	1	212506874	212506874	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	212506874	212506874	T	C	SNP	PPP2R5A	ENST00000261461	human	ensembl	74_37	+1	known	silent	c.414	p.S138	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5A	HGNC	ENSG00000066027				76	0	0	36	17	32.0755
PROX1	0	genome.wustl.edu	37	1	214170404	214170404	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	214170404	214170404	A	G	SNP	PROX1	ENST00000261454	human	ensembl	74_37	+1	known	missense	c.526	p.M176V	1.000	pfam_Homeo_prospero_dom	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707				94	0	0	88	22	20
PROX1	0	genome.wustl.edu	37	1	214170994	214170994	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	214170994	214170994	G	T	SNP	PROX1	ENST00000261454	human	ensembl	74_37	+1	known	silent	c.1116	p.S372	0.819	pfam_Homeo_prospero_dom	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707				125	0	0	108	47	30.3226
PTPN14	0	genome.wustl.edu	37	1	214638166	214638166	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	214638166	214638166	G	A	SNP	PTPN14	ENST00000486173	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PTPN14	HGNC	ENSG00000152104				72	0	0	63	26	29.2135
ECE1	0	genome.wustl.edu	37	1	21599373	21599373	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	21599373	21599373	A	G	SNP	ECE1	ENST00000374893	human	ensembl	74_37	-1	known	silent	c.312	p.C104	0.377	NULL	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298				112	0	0	86	22	20.3704
USH2A	0	genome.wustl.edu	37	1	216062234	216062234	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	216062234	216062234	G	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.7757	p.T2586R	0.790	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				155	0	0	85	22	20.5607
GPATCH2	0	genome.wustl.edu	37	1	217793649	217793649	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	217793649	217793649	C	T	SNP	GPATCH2	ENST00000366935	human	ensembl	74_37	-1	known	silent	c.249	p.E83	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978				93	0	0	66	28	29.7872
LYPLAL1	0	genome.wustl.edu	37	1	219352518	219352518	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	219352518	219352518	A	G	SNP	LYPLAL1	ENST00000366928	human	ensembl	74_37	+1	known	missense	c.121	p.I41V	1.000	pfam_PLipase/COase/thioEstase	pfam_PLipase/COase/thioEstase,pfam_Dienelactn_hydro,pfam_Esterase_put	-	no_errors	LYPLAL1	HGNC	ENSG00000143353				35	0	0	35	9	20.4545
SLC30A10	0	genome.wustl.edu	37	1	220101753	220101753	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	220101753	220101753	C	T	SNP	SLC30A10	ENST00000366926	human	ensembl	74_37	-1	known	silent	c.30	p.R10	0.997	tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660				35	0	0	23	8	25.8065
MARC1	0	genome.wustl.edu	37	1	220971113	220971113	+	RNA	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	220971113	220971113	T	C	SNP	MARC1	ENST00000472269	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MARC1	HGNC	ENSG00000186205				25	0	0	13	4	23.5294
BROX	0	genome.wustl.edu	37	1	222889064	222889064	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	222889064	222889064	A	G	SNP	BROX	ENST00000539697	human	ensembl	74_37	+1	known	missense	c.23	p.N8S	1.000	NULL	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	BROX	HGNC	ENSG00000162819				77	0	0	52	18	25.7143
DISP1	0	genome.wustl.edu	37	1	223177683	223177683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	223177683	223177683	G	A	SNP	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	missense	c.2944	p.D982N	0.999	pfam_Patched,pfam_MMPL_dom	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				83	0	0	57	4	6.55738
TLR5	0	genome.wustl.edu	37	1	223284384	223284384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	223284384	223284384	G	A	SNP	TLR5	ENST00000342210	human	ensembl	74_37	-1	known	missense	c.1990	p.R664W	1.000	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554				89	0	0	60	31	34.0659
TLR5	0	genome.wustl.edu	37	1	223286173	223286173	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	223286173	223286173	G	T	SNP	TLR5	ENST00000342210	human	ensembl	74_37	-1	known	silent	c.201	p.P67	0.024	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554				108	0	0	68	15	18.0723
NVL	0	genome.wustl.edu	37	1	224491429	224491429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	224491429	224491429	G	A	SNP	NVL	ENST00000281701	human	ensembl	74_37	-1	known	missense	c.956	p.A319V	1.000	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,pfam_ATPase_dyneun-rel_AAA,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NVL	HGNC	ENSG00000143748				72	0	0	51	5	8.92857
TMEM63A	0	genome.wustl.edu	37	1	226036699	226036699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	226036699	226036699	C	T	SNP	TMEM63A	ENST00000366835	human	ensembl	74_37	-1	known	missense	c.2086	p.A696T	0.062	NULL	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187				12	0	0	7	2	22.2222
TMEM63A	0	genome.wustl.edu	37	1	226041489	226041489	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	226041489	226041489	G	A	SNP	TMEM63A	ENST00000366835	human	ensembl	74_37	-1	known	silent	c.1638	p.C546	0.782	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187				23	0	0	15	3	16.6667
TMEM63A	0	genome.wustl.edu	37	1	226044664	226044664	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	226044664	226044664	G	A	SNP	TMEM63A	ENST00000366835	human	ensembl	74_37	-1	known	silent	c.1431	p.A477	0.953	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63A	HGNC	ENSG00000196187				45	0	0	26	9	25.7143
PYCR2	0	genome.wustl.edu	37	1	226109261	226109261	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	226109261	226109261	C	A	SNP	PYCR2	ENST00000343818	human	ensembl	74_37	-1	known	missense	c.624	p.Q208H	1.000	superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCR2	HGNC	ENSG00000143811				102	0	0	73	28	27.7228
ITPKB	0	genome.wustl.edu	37	1	226923840	226923840	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	226923840	226923840	G	A	SNP	ITPKB	ENST00000272117	human	ensembl	74_37	-1	known	silent	c.1320	p.S440	0.000	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772				65	0	0	58	16	21.6216
ADCK3	0	genome.wustl.edu	37	1	227153002	227153002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	227153002	227153002	G	A	SNP	ADCK3	ENST00000366777	human	ensembl	74_37	+1	known	missense	c.479	p.R160Q	0.134	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK3	HGNC	ENSG00000163050				38	0	0	36	8	18.1818
ZNF678	0	genome.wustl.edu	37	1	227842415	227842415	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	227842415	227842415	G	A	SNP	ZNF678	ENST00000397097	human	ensembl	74_37	+1	known	missense	c.629	p.C210Y	0.142	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF678	HGNC	ENSG00000181450				91	0	0	89	5	5.31915
SNAP47	0	genome.wustl.edu	37	1	227920569	227920569	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	227920569	227920569	G	A	SNP	SNAP47	ENST00000480265	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNAP47	HGNC	ENSG00000143740				129	1	0.769231	89	27	23.2759
PGBD5	0	genome.wustl.edu	37	1	230492738	230492738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	230492738	230492738	G	A	SNP	PGBD5	ENST00000321327	human	ensembl	74_37	-1	known	missense	c.751	p.R251C	1.000	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614				80	0	0	69	25	26.5957
EPHB2	0	genome.wustl.edu	37	1	23191443	23191443	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	23191443	23191443	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	silent	c.1041	p.P347	0.316	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				169	0	0	168	29	14.7208
EPHB2	0	genome.wustl.edu	37	1	23235636	23235636	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	23235636	23235636	G	A	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	missense	c.2474	p.R825Q	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				115	0	0	68	25	26.8817
SIPA1L2	0	genome.wustl.edu	37	1	232581284	232581284	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	232581284	232581284	T	C	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.3344	p.D1115G	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				84	0	0	62	29	31.8681
MAP10	0	genome.wustl.edu	37	1	232941435	232941435	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	232941435	232941435	C	T	SNP	MAP10	ENST00000418460	human	ensembl	74_37	+1	known	silent	c.666	p.A222	0.000	NULL	NULL	-	no_errors	MAP10	HGNC	ENSG00000212916				27	0	0	21	6	22.2222
KDM1A	0	genome.wustl.edu	37	1	23398631	23398631	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	23398631	23398631	A	G	SNP	KDM1A	ENST00000542151	human	ensembl	74_37	+1	known	silent	c.1563	p.L521	1.000	pfam_Amino_oxidase,pirsf_Hist_Lys-spec_deMease	pfam_Amino_oxidase,pfam_SWIRM,pfam_FAD-dep_OxRdtase,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pirsf_Hist_Lys-spec_deMease,pfscan_SWIRM	-	no_errors	KDM1A	HGNC	ENSG00000004487				14	0	0	17	7	29.1667
LYST	0	genome.wustl.edu	37	1	235929422	235929422	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	235929422	235929422	G	A	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	silent	c.6078	p.Y2026	0.997	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				170	0	0	122	30	19.7368
HEATR1	0	genome.wustl.edu	37	1	236759102	236759102	+	RNA	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	236759102	236759102	T	C	SNP	HEATR1	ENST00000483073	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HEATR1	HGNC	ENSG00000119285				71	0	0	33	10	23.2558
MT1HL1	0	genome.wustl.edu	37	1	237167652	237167652	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	237167652	237167652	G	A	SNP	MT1HL1	ENST00000464121	human	ensembl	74_37	-1	known	silent	c.21	p.C7	0.687	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT1HL1	HGNC	ENSG00000244020				80	0	0	64	28	30.4348
ASAP3	0	genome.wustl.edu	37	1	23762466	23762466	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	23762466	23762466	G	A	SNP	ASAP3	ENST00000336689	human	ensembl	74_37	-1	known	missense	c.1627	p.R543W	0.008	superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280				208	0	0	162	55	25.3456
PLCH2	0	genome.wustl.edu	37	1	2415891	2415891	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	2415891	2415891	C	T	SNP	PLCH2	ENST00000378486	human	ensembl	74_37	+1	known	missense	c.650	p.A217V	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH2	HGNC	ENSG00000149527				50	0	0	38	9	19.1489
PLCH2	0	genome.wustl.edu	37	1	2426323	2426323	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	2426323	2426323	G	T	SNP	PLCH2	ENST00000378486	human	ensembl	74_37	+1	known	missense	c.1688	p.G563V	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH2	HGNC	ENSG00000149527				20	0	0	14	5	26.3158
SDCCAG8	0	genome.wustl.edu	37	1	243437869	243437869	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	243437869	243437869	A	G	SNP	SDCCAG8	ENST00000366541	human	ensembl	74_37	+1	known	missense	c.331	p.N111D	0.000	NULL	NULL	-	no_errors	SDCCAG8	HGNC	ENSG00000054282				70	0	0	34	19	35.8491
C1orf100	0	genome.wustl.edu	37	1	244538703	244538703	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	244538703	244538703	T	C	SNP	C1orf100	ENST00000308105	human	ensembl	74_37	+1	known	missense	c.86	p.V29A	0.006	NULL	NULL	-	no_errors	C1orf100	HGNC	ENSG00000173728				82	0	0	50	14	21.875
TFB2M	0	genome.wustl.edu	37	1	246729200	246729200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	246729200	246729200	C	T	SNP	TFB2M	ENST00000366514	human	ensembl	74_37	-1	known	missense	c.241	p.A81T	0.062	smart_rRNA_Ade_methylase_Trfase_N,pirsf_Mt_di-Me-Ado_Trfase_2_prcur	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,pirsf_Mt_di-Me-Ado_Trfase_2_prcur	-	no_errors	TFB2M	HGNC	ENSG00000162851				150	0	0	97	36	27.0677
AHCTF1	0	genome.wustl.edu	37	1	247014591	247014591	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	247014591	247014591	T	C	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	missense	c.4744	p.T1582A	0.999	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207				106	0	0	74	29	28.1553
ZNF124	0	genome.wustl.edu	37	1	247320277	247320277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	247320277	247320277	C	T	SNP	ZNF124	ENST00000543802	human	ensembl	74_37	-1	known	missense	c.647	p.R216H	0.019	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF124	HGNC	ENSG00000196418				138	0	0	77	26	25.2427
WDTC1	0	genome.wustl.edu	37	1	27624461	27624461	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	27624461	27624461	G	A	SNP	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	missense	c.1091	p.R364H	1.000	superfamily_WD40_repeat_dom,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				101	0	0	89	24	21.2389
PTAFR	0	genome.wustl.edu	37	1	28476598	28476598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	28476598	28476598	C	T	SNP	PTAFR	ENST00000305392	human	ensembl	74_37	-1	known	missense	c.935	p.R312H	0.540	prints_PAF_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_PAF_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTAFR	HGNC	ENSG00000169403				158	0	0	97	30	23.622
DNAJC8	0	genome.wustl.edu	37	1	28541456	28541456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	28541456	28541456	G	A	SNP	DNAJC8	ENST00000263697	human	ensembl	74_37	-1	known	missense	c.232	p.R78W	1.000	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC8	HGNC	ENSG00000126698				16	0	0	13	3	18.75
BAI2	0	genome.wustl.edu	37	1	32207532	32207532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	32207532	32207532	C	T	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	missense	c.1454	p.S485N	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753				112	0	0	106	31	22.6277
RNF19B	0	genome.wustl.edu	37	1	33413904	33413904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	33413904	33413904	C	T	SNP	RNF19B	ENST00000373456	human	ensembl	74_37	-1	known	missense	c.905	p.C302Y	1.000	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19B	HGNC	ENSG00000116514				117	0	0	58	23	28.3951
GJB4	0	genome.wustl.edu	37	1	35227066	35227066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	35227066	35227066	G	A	SNP	GJB4	ENST00000339480	human	ensembl	74_37	+1	known	missense	c.211	p.V71M	1.000	pfam_Connexin_N,smart_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin303	-	no_errors	GJB4	HGNC	ENSG00000189433				42	0	0	31	9	22.5
GJB4	0	genome.wustl.edu	37	1	35227334	35227334	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	35227334	35227334	G	T	SNP	GJB4	ENST00000339480	human	ensembl	74_37	+1	known	missense	c.479	p.R160L	0.002	pfam_Connexin_CCC	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin303	-	no_errors	GJB4	HGNC	ENSG00000189433				72	0	0	64	20	23.8095
AGO4	0	genome.wustl.edu	37	1	36291026	36291026	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	36291026	36291026	A	G	SNP	AGO4	ENST00000373210	human	ensembl	74_37	+1	known	missense	c.419	p.H140R	1.000	superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO4	HGNC	ENSG00000134698				149	0	0	114	14	10.9375
ZC3H12A	0	genome.wustl.edu	37	1	37948726	37948726	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	37948726	37948726	G	T	SNP	ZC3H12A	ENST00000373087	human	ensembl	74_37	+1	known	silent	c.1314	p.S438	0.001	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874				44	0	0	46	17	26.9841
C1orf174	0	genome.wustl.edu	37	1	3809521	3809521	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	3809521	3809521	G	A	SNP	C1orf174	ENST00000361605	human	ensembl	74_37	-1	known	nonsense	c.55	p.R19*	0.001	NULL	NULL	-	no_errors	C1orf174	HGNC	ENSG00000198912				46	0	0	44	10	18.5185
RSPO1	0	genome.wustl.edu	37	1	38095330	38095330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	38095330	38095330	G	A	SNP	RSPO1	ENST00000356545	human	ensembl	74_37	-1	known	missense	c.4	p.R2W	1.000	NULL	pfam_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO1	HGNC	ENSG00000169218				40	0	0	45	28	38.3562
EPHA10	0	genome.wustl.edu	37	1	38197190	38197190	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	38197190	38197190	A	G	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	missense	c.1556	p.L519P	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				204	0	0	155	67	30.1802
SF3A3	0	genome.wustl.edu	37	1	38449889	38449889	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	38449889	38449889	G	A	SNP	SF3A3	ENST00000373019	human	ensembl	74_37	-1	known	silent	c.420	p.L140	0.530	NULL	pfam_DUF3449,pfam_SF3a60_bindingd,pfscan_Znf_C2H2_matrin	-	no_errors	SF3A3	HGNC	ENSG00000183431				22	0	0	13	10	43.4783
MACF1	0	genome.wustl.edu	37	1	39775307	39775307	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	39775307	39775307	T	G	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.2870	p.L957R	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				105	0	0	52	22	29.7297
RLF	0	genome.wustl.edu	37	1	40701518	40701518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	40701518	40701518	C	T	SNP	RLF	ENST00000372771	human	ensembl	74_37	+1	known	missense	c.1144	p.L382F	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000				98	0	0	57	14	19.7183
EXO5	0	genome.wustl.edu	37	1	40981196	40981196	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	40981196	40981196	T	C	SNP	EXO5	ENST00000296380	human	ensembl	74_37	+1	known	missense	c.980	p.M327T	1.000	pfam_EXOV	pfam_EXOV	-	no_errors	EXO5	HGNC	ENSG00000164002				70	0	0	49	20	28.9855
NFYC	0	genome.wustl.edu	37	1	41236429	41236429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	41236429	41236429	G	A	SNP	NFYC	ENST00000308733	human	ensembl	74_37	+1	known	missense	c.1306	p.A436T	1.000	NULL	pfam_CBFA_NFYB_domain,pfam_Histone_core_D,superfamily_Histone-fold	-	no_errors	NFYC	HGNC	ENSG00000066136				122	0	0	89	36	28.8
EDN2	0	genome.wustl.edu	37	1	41945042	41945042	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	41945042	41945042	C	T	SNP	EDN2	ENST00000490783	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	EDN2	HGNC	ENSG00000127129				35	0	0	33	9	21.4286
RIMKLA	0	genome.wustl.edu	37	1	42880422	42880422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	42880422	42880422	C	T	SNP	RIMKLA	ENST00000431473	human	ensembl	74_37	+1	known	missense	c.953	p.S318L	1.000	NULL	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLA	HGNC	ENSG00000177181				135	1	0.735294	94	37	28.2443
PPCS	0	genome.wustl.edu	37	1	42922972	42922972	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	42922972	42922972	T	C	SNP	PPCS	ENST00000372561	human	ensembl	74_37	+1	known	missense	c.563	p.V188A	1.000	pfam_DNA/pantothenate-metab_flavo_C,superfamily_DNA/pantothenate-metab_flavo_C	pfam_DNA/pantothenate-metab_flavo_C,superfamily_DNA/pantothenate-metab_flavo_C	-	no_errors	PPCS	HGNC	ENSG00000127125				255	0	0	161	59	26.8182
SLC2A1	0	genome.wustl.edu	37	1	43393339	43393339	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	43393339	43393339	G	A	SNP	SLC2A1	ENST00000426263	human	ensembl	74_37	-1	known	silent	c.1215	p.A405	0.033	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394				59	0	0	35	16	31.3725
PTPRF	0	genome.wustl.edu	37	1	44057017	44057017	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	44057017	44057017	G	A	SNP	PTPRF	ENST00000359947	human	ensembl	74_37	+1	known	missense	c.1324	p.G442S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRF	HGNC	ENSG00000142949				11	0	0	8	3	27.2727
DMAP1	0	genome.wustl.edu	37	1	44685707	44685707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	44685707	44685707	C	T	SNP	DMAP1	ENST00000315913	human	ensembl	74_37	+1	known	missense	c.1070	p.T357M	1.000	pfam_DMAP1	pfam_DMAP1,superfamily_Homeodomain-like	-	no_errors	DMAP1	HGNC	ENSG00000178028				52	0	0	29	8	21.6216
BEST4	0	genome.wustl.edu	37	1	45251767	45251767	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	45251767	45251767	G	A	SNP	BEST4	ENST00000372207	human	ensembl	74_37	-1	known	silent	c.615	p.I205	0.926	pfam_Bestrophin/UPF0187	pfam_Bestrophin/UPF0187	-	no_errors	BEST4	HGNC	ENSG00000142959				183	1	0.543478	149	51	25.5
MUTYH	0	genome.wustl.edu	37	1	45798819	45798819	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	45798819	45798819	G	T	SNP	MUTYH	ENST00000450313	human	ensembl	74_37	-1	known	missense	c.412	p.Q138K	1.000	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,smart_HhH-GPD_domain	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,superfamily_NUDIX_hydrolase_dom-like,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	MUTYH	HGNC	ENSG00000132781				182	0	0	145	47	24.4792
OSBPL9	0	genome.wustl.edu	37	1	52238325	52238325	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	52238325	52238325	C	A	SNP	OSBPL9	ENST00000371710	human	ensembl	74_37	+1	known	missense	c.1154	p.S385Y	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859				176	0	0	107	40	27.2109
ORC1	0	genome.wustl.edu	37	1	52847336	52847336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	52847336	52847336	G	A	SNP	ORC1	ENST00000371566	human	ensembl	74_37	-1	known	missense	c.2111	p.A704V	1.000	superfamily_P-loop_NTPase	pfam_BAH_dom,pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,pfam_DUF2075,superfamily_P-loop_NTPase,smart_BAH_dom,smart_AAA+_ATPase,pfscan_BAH_dom	-	no_errors	ORC1	HGNC	ENSG00000085840				80	0	0	57	17	22.973
PODN	0	genome.wustl.edu	37	1	53544147	53544147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	53544147	53544147	G	A	SNP	PODN	ENST00000312553	human	ensembl	74_37	+1	known	missense	c.1109	p.R370Q	0.004	NULL	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348				125	0	0	94	30	24.1935
DMRTB1	0	genome.wustl.edu	37	1	53925145	53925145	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	53925145	53925145	C	A	SNP	DMRTB1	ENST00000371445	human	ensembl	74_37	+1	known	missense	c.19	p.R7S	1.000	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTB1	HGNC	ENSG00000143006				66	0	0	59	19	24.359
YIPF1	0	genome.wustl.edu	37	1	54331937	54331937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	54331937	54331937	C	T	SNP	YIPF1	ENST00000539954	human	ensembl	74_37	-1	known	missense	c.842	p.R281H	0.963	pfam_Yip1	pfam_Yip1,superfamily_Ribonuclease/ribotoxin	-	no_errors	YIPF1	HGNC	ENSG00000058799				111	0	0	61	24	28.2353
FGGY	0	genome.wustl.edu	37	1	60125950	60125950	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	60125950	60125950	A	G	SNP	FGGY	ENST00000303721	human	ensembl	74_37	+1	known	silent	c.1281	p.T427	0.946	pfam_Carb_kinase_FGGY_C,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456				64	0	0	64	12	15.7895
RNF207	0	genome.wustl.edu	37	1	6272055	6272055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	6272055	6272055	C	T	SNP	RNF207	ENST00000377939	human	ensembl	74_37	+1	novel	missense	c.1238	p.A413V	0.995	NULL	pfam_Znf_B-box,smart_Znf_RING,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	RNF207	HGNC	ENSG00000158286				17	0	0	11	4	26.6667
RNF207	0	genome.wustl.edu	37	1	6272090	6272090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	6272090	6272090	C	T	SNP	RNF207	ENST00000377948	human	ensembl	74_37	+1	known	missense	c.425	p.P142L	1.000	NULL	NULL	-	no_errors	RNF207	HGNC	ENSG00000158286				24	0	0	17	7	29.1667
KANK4	0	genome.wustl.edu	37	1	62732402	62732402	+	Splice_Site	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	62732402	62732402	A	G	SNP	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	splice_site	c.2319+2	e5+2	1.000	-	-	-	no_errors	KANK4	HGNC	ENSG00000132854				111	0	0	70	19	21.3483
TNFRSF25	0	genome.wustl.edu	37	1	6522554	6522554	+	RNA	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	6522554	6522554	T	C	SNP	TNFRSF25	ENST00000475730	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TNFRSF25	HGNC	ENSG00000215788				43	0	0	30	10	25
LRRC40	0	genome.wustl.edu	37	1	70654896	70654896	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	70654896	70654896	G	A	SNP	LRRC40	ENST00000370952	human	ensembl	74_37	-1	known	missense	c.212	p.S71L	0.946	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC40	HGNC	ENSG00000066557				122	0	0	86	26	23.2143
ZRANB2	0	genome.wustl.edu	37	1	71536538	71536538	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	71536538	71536538	A	G	SNP	ZRANB2	ENST00000370920	human	ensembl	74_37	-1	known	missense	c.655	p.S219P	1.000	pirsf_UCP037956_Znf_RanB2	pfam_Znf_RanBP2,smart_Znf_RanBP2,pirsf_UCP037956_Znf_RanB2,pfscan_Znf_RanBP2	-	no_errors	ZRANB2	HGNC	ENSG00000132485				177	0	0	114	17	12.9771
ASB17	0	genome.wustl.edu	37	1	76397950	76397950	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	76397950	76397950	A	G	SNP	ASB17	ENST00000284142	human	ensembl	74_37	-1	known	silent	c.27	p.G9	0.001	NULL	pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_SOCS_C,pfscan_SOCS_C	-	no_errors	ASB17	HGNC	ENSG00000154007				49	0	0	35	19	35.1852
PIGK	0	genome.wustl.edu	37	1	77587958	77587958	+	Splice_Site	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	77587958	77587958	A	C	SNP	PIGK	ENST00000370812	human	ensembl	74_37	-1	known	splice_site	c.1071+2	e10+2	1.000	-	-	-	no_errors	PIGK	HGNC	ENSG00000142892				40	0	0	30	11	26.8293
AK5	0	genome.wustl.edu	37	1	77987583	77987583	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	77987583	77987583	C	T	SNP	AK5	ENST00000354567	human	ensembl	74_37	+1	known	silent	c.1383	p.D461	0.803	pfam_Adenylate_kin,superfamily_P-loop_NTPase,prints_Adenylate_kin,tigrfam_Adenylate_kin1	pfam_Adenylate_kin,pfam_Dpy-30_motif,superfamily_P-loop_NTPase,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin,tigrfam_Adenylate_kin1	-	no_errors	AK5	HGNC	ENSG00000154027				65	0	0	48	15	23.8095
RERE	0	genome.wustl.edu	37	1	8421496	8421496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	8421496	8421496	G	A	SNP	RERE	ENST00000337907	human	ensembl	74_37	-1	known	missense	c.2071	p.R691C	1.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				100	0	0	63	28	30.7692
HS2ST1	0	genome.wustl.edu	37	1	87599323	87599323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	87599323	87599323	C	T	SNP	HS2ST1	ENST00000356813	human	ensembl	74_37	+1	known	missense	c.793	p.R265W	0.000	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS2ST1	HGNC	ENSG00000153936				21	0	0	14	12	46.1538
KLHL17	0	genome.wustl.edu	37	1	899383	899383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	899383	899383	C	T	SNP	KLHL17	ENST00000338591	human	ensembl	74_37	+1	known	missense	c.1439	p.T480M	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL17	HGNC	ENSG00000187961				167	0	0	116	62	34.8315
CA6	0	genome.wustl.edu	37	1	9027746	9027746	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	9027746	9027746	C	T	SNP	CA6	ENST00000377443	human	ensembl	74_37	+1	known	silent	c.600	p.D200	0.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA6	HGNC	ENSG00000131686				130	1	0.763359	86	27	23.8938
PLEKHN1	0	genome.wustl.edu	37	1	907764	907764	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	907764	907764	C	G	SNP	PLEKHN1	ENST00000379409	human	ensembl	74_37	+1	known	missense	c.1118	p.A373G	0.000	NULL	smart_Pleckstrin_homology	-	no_errors	PLEKHN1	HGNC	ENSG00000187583				10	0	0	17	4	19.0476
LZTS2	0	genome.wustl.edu	37	10	102763509	102763509	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	102763509	102763509	C	T	SNP	LZTS2	ENST00000370220	human	ensembl	74_37	+1	known	silent	c.654	p.S218	0.033	NULL	NULL	-	no_errors	LZTS2	HGNC	ENSG00000107816				327	0	0	249	73	22.6708
KAZALD1	0	genome.wustl.edu	37	10	102824771	102824771	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	102824771	102824771	C	T	SNP	KAZALD1	ENST00000477979	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KAZALD1	HGNC	ENSG00000107821				14	0	0	9	4	30.7692
NEURL	0	genome.wustl.edu	37	10	105344877	105344877	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	105344877	105344877	A	G	SNP	NEURL	ENST00000369780	human	ensembl	74_37	+1	known	missense	c.1234	p.S412G	1.000	smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,smart_Neu_Z,pfscan_Neu_Z,pfscan_Znf_RING	-	no_errors	NEURL	HGNC	ENSG00000107954				22	0	0	13	3	18.75
ADRB1	0	genome.wustl.edu	37	10	115804702	115804702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	115804702	115804702	C	T	SNP	ADRB1	ENST00000369295	human	ensembl	74_37	+1	known	missense	c.811	p.R271W	0.642	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB1_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_5HT6_rcpt	-	no_errors	ADRB1	HGNC	ENSG00000043591				20	0	0	26	5	16.129
TRUB1	0	genome.wustl.edu	37	10	116730145	116730145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	116730145	116730145	A	G	SNP	TRUB1	ENST00000298746	human	ensembl	74_37	+1	known	missense	c.542	p.D181G	1.000	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	-	no_errors	TRUB1	HGNC	ENSG00000165832				94	0	0	103	38	26.9504
VAX1	0	genome.wustl.edu	37	10	118896101	118896101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	118896101	118896101	C	T	SNP	VAX1	ENST00000369206	human	ensembl	74_37	-1	known	missense	c.311	p.R104H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	VAX1	HGNC	ENSG00000148704				84	0	0	51	20	28.169
EIF3A	0	genome.wustl.edu	37	10	120801864	120801864	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	120801864	120801864	C	T	SNP	EIF3A	ENST00000369144	human	ensembl	74_37	-1	known	silent	c.3168	p.E1056	0.200	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581				425	0	0	289	92	24.147
CPXM2	0	genome.wustl.edu	37	10	125521573	125521573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	125521573	125521573	C	T	SNP	CPXM2	ENST00000241305	human	ensembl	74_37	-1	known	missense	c.1592	p.R531Q	0.982	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898				161	1	0.617284	128	32	20
FAM175B	0	genome.wustl.edu	37	10	126495401	126495401	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	126495401	126495401	A	G	SNP	FAM175B	ENST00000298492	human	ensembl	74_37	+1	known	missense	c.74	p.E25G	1.000	prints_FAM175	prints_FAM175_BRISC_cplx_Abro1_su,prints_FAM175	-	no_errors	FAM175B	HGNC	ENSG00000165660				69	0	0	64	7	9.85915
MKI67	0	genome.wustl.edu	37	10	129905447	129905447	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	129905447	129905447	C	T	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.4657	p.A1553T	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				306	1	0.325733	211	80	27.4914
CCDC3	0	genome.wustl.edu	37	10	13040383	13040383	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	13040383	13040383	C	A	SNP	CCDC3	ENST00000378825	human	ensembl	74_37	-1	known	missense	c.504	p.Q168H	0.230	NULL	NULL	-	no_errors	CCDC3	HGNC	ENSG00000151468				82	0	0	60	22	26.8293
EBF3	0	genome.wustl.edu	37	10	131761786	131761786	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	131761786	131761786	C	T	SNP	EBF3	ENST00000355311	human	ensembl	74_37	-1	known	missense	c.136	p.G46S	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF3	HGNC	ENSG00000108001				41	0	0	41	14	25.4545
PWWP2B	0	genome.wustl.edu	37	10	134218325	134218325	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	134218325	134218325	G	A	SNP	PWWP2B	ENST00000305233	human	ensembl	74_37	+1	known	silent	c.321	p.P107	0.001	NULL	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	PWWP2B	HGNC	ENSG00000171813				16	0	0	14	3	17.6471
NMT2	0	genome.wustl.edu	37	10	15161388	15161388	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	15161388	15161388	T	G	SNP	NMT2	ENST00000378165	human	ensembl	74_37	-1	known	missense	c.1124	p.H375P	1.000	pfam_MyristoylCoA_TrFase_C,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT2	HGNC	ENSG00000152465				211	0	0	110	28	20.2899
ITGA8	0	genome.wustl.edu	37	10	15760807	15760807	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	15760807	15760807	C	A	SNP	ITGA8	ENST00000378076	human	ensembl	74_37	-1	known	nonsense	c.301	p.E101*	0.001	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943				163	0	0	153	41	21.134
CACNB2	0	genome.wustl.edu	37	10	18803225	18803225	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	18803225	18803225	G	A	SNP	CACNB2	ENST00000324631	human	ensembl	74_37	+1	known	missense	c.731	p.R244H	1.000	superfamily_SH3_domain,prints_VDCC_L_b2su	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995				101	0	0	47	25	34.7222
KIAA1217	0	genome.wustl.edu	37	10	24508698	24508698	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	24508698	24508698	C	G	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.214	p.P72A	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				99	0	0	61	22	26.506
YME1L1	0	genome.wustl.edu	37	10	27411773	27411773	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	27411773	27411773	T	C	SNP	YME1L1	ENST00000326799	human	ensembl	74_37	-1	known	missense	c.1403	p.D468G	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758				64	0	0	55	19	25.6757
FZD8	0	genome.wustl.edu	37	10	35929556	35929556	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	35929556	35929556	A	G	SNP	FZD8	ENST00000374694	human	ensembl	74_37	-1	known	missense	c.802	p.F268L	1.000	pfam_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD8	HGNC	ENSG00000177283				71	0	0	66	25	27.4725
ALOX5	0	genome.wustl.edu	37	10	45938728	45938728	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	45938728	45938728	C	T	SNP	ALOX5	ENST00000481117	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ALOX5	HGNC	ENSG00000012779				80	0	0	56	30	34.8837
FRMPD2	0	genome.wustl.edu	37	10	49420083	49420083	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	49420083	49420083	C	T	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	missense	c.1525	p.A509T	0.001	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324				56	0	0	38	16	29.6296
C10orf53	0	genome.wustl.edu	37	10	50901943	50901943	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	50901943	50901943	A	G	SNP	C10orf53	ENST00000374113	human	ensembl	74_37	+1	known	missense	c.221	p.K74R	0.994	NULL	NULL	-	no_errors	C10orf53	HGNC	ENSG00000178645				68	0	0	37	18	32.7273
PRKG1	0	genome.wustl.edu	37	10	52751304	52751304	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	52751304	52751304	C	A	SNP	PRKG1	ENST00000401604	human	ensembl	74_37	+1	known	missense	c.166	p.P56T	1.000	pirsf_cGMP-dependent_protein_kinase,superfamily_cNMP-bd-like	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532				13	0	0	13	9	40.9091
PHYHIPL	0	genome.wustl.edu	37	10	60996388	60996388	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	60996388	60996388	G	A	SNP	PHYHIPL	ENST00000373880	human	ensembl	74_37	+1	known	nonsense	c.449	p.W150*	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIPL	HGNC	ENSG00000165443				60	0	0	54	19	26.0274
ANK3	0	genome.wustl.edu	37	10	61956355	61956355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	61956355	61956355	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.1718	p.A573V	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				47	0	0	27	11	28.9474
LRRTM3	0	genome.wustl.edu	37	10	68687080	68687080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	68687080	68687080	C	T	SNP	LRRTM3	ENST00000361320	human	ensembl	74_37	+1	known	missense	c.406	p.R136W	0.994	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739				191	0	0	105	45	30
SFMBT2	0	genome.wustl.edu	37	10	7213935	7213935	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	7213935	7213935	T	C	SNP	SFMBT2	ENST00000361972	human	ensembl	74_37	-1	known	silent	c.2337	p.R779	0.001	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879				10	0	0	14	5	26.3158
ADAMTS14	0	genome.wustl.edu	37	10	72462141	72462141	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	72462141	72462141	C	T	SNP	ADAMTS14	ENST00000373208	human	ensembl	74_37	+1	known	missense	c.596	p.A199V	0.916	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316				101	0	0	77	31	28.7037
CDH23	0	genome.wustl.edu	37	10	73270887	73270887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	73270887	73270887	G	A	SNP	CDH23	ENST00000461841	human	ensembl	74_37	+1	known	missense	c.482	p.R161Q	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				192	0	0	132	40	23.2558
CDH23	0	genome.wustl.edu	37	10	73501453	73501453	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	73501453	73501453	C	T	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	silent	c.4635	p.N1545	0.990	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				32	0	0	13	3	18.75
SYNPO2L	0	genome.wustl.edu	37	10	75407024	75407024	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	75407024	75407024	G	A	SNP	SYNPO2L	ENST00000394810	human	ensembl	74_37	-1	known	missense	c.2386	p.P796S	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317				249	0	0	184	55	23.0126
ZNF503	0	genome.wustl.edu	37	10	77158837	77158837	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	77158837	77158837	G	A	SNP	ZNF503	ENST00000372524	human	ensembl	74_37	-1	known	silent	c.1611	p.S537	1.000	pfscan_Znf_C2H2	pfam_Tscrpt_rep_NocA-like,pfscan_Znf_C2H2	-	no_errors	ZNF503	HGNC	ENSG00000165655				43	0	0	42	13	23.6364
ITIH2	0	genome.wustl.edu	37	10	7774331	7774331	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	7774331	7774331	G	T	SNP	ITIH2	ENST00000358415	human	ensembl	74_37	+1	known	missense	c.1678	p.A560S	0.032	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655				63	0	0	45	13	22.4138
MAT1A	0	genome.wustl.edu	37	10	82049113	82049113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	82049113	82049113	C	T	SNP	MAT1A	ENST00000372213	human	ensembl	74_37	-1	known	missense	c.67	p.E23K	1.000	pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	pfam_S-AdoMet_synt_C,pfam_S-AdoMet_synt_central,pfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synthetase_sfam,pirsf_S-AdoMet_synthetase,tigrfam_S-AdoMet_synthetase	-	no_errors	MAT1A	HGNC	ENSG00000151224				146	0	0	71	24	25.2632
LARP4B	0	genome.wustl.edu	37	10	860914	860914	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	860914	860914	G	A	SNP	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	nonsense	c.1792	p.R598*	0.302	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				81	0	0	61	17	21.7949
PLCE1	0	genome.wustl.edu	37	10	95891942	95891942	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	95891942	95891942	A	G	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	silent	c.1218	p.A406	1.000	superfamily_Ras_GEF_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				60	0	0	37	14	27.451
PLCE1	0	genome.wustl.edu	37	10	96006283	96006283	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	96006283	96006283	G	A	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	missense	c.3001	p.G1001R	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				105	0	0	87	13	13
PLCE1	0	genome.wustl.edu	37	10	96039636	96039636	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	96039636	96039636	A	G	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	missense	c.4763	p.E1588G	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				90	0	0	55	13	19.1176
PIK3AP1	0	genome.wustl.edu	37	10	98412547	98412547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	98412547	98412547	G	A	SNP	PIK3AP1	ENST00000339364	human	ensembl	74_37	-1	known	missense	c.620	p.A207V	0.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629				190	0	0	149	47	23.9796
FRAT1	0	genome.wustl.edu	37	10	99079991	99079991	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	99079991	99079991	G	T	SNP	FRAT1	ENST00000371021	human	ensembl	74_37	+1	known	missense	c.781	p.G261C	0.062	NULL	pfam_GSK3-bd	-	no_errors	FRAT1	HGNC	ENSG00000165879				15	0	0	11	3	21.4286
PGR	0	genome.wustl.edu	37	11	100998971	100998971	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	100998971	100998971	C	T	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	silent	c.831	p.A277	0.008	pfam_Progest_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				16	0	0	21	5	19.2308
MUC6	0	genome.wustl.edu	37	11	1025844	1025844	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	1025844	1025844	G	A	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	silent	c.2760	p.S920	0.028	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				39	0	0	17	12	41.3793
MMP8	0	genome.wustl.edu	37	11	102593290	102593290	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	102593290	102593290	T	G	SNP	MMP8	ENST00000236826	human	ensembl	74_37	-1	known	missense	c.217	p.N73H	0.002	pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP8	HGNC	ENSG00000118113				144	0	0	112	32	22.2222
DDI1	0	genome.wustl.edu	37	11	103908681	103908681	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	103908681	103908681	T	C	SNP	DDI1	ENST00000302259	human	ensembl	74_37	+1	known	silent	c.1131	p.D377	0.171	NULL	pfam_Peptidase_aspartic_DDI1-type,pfam_Ubiquitin_dom,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967				61	0	0	46	13	22.0339
GRIA4	0	genome.wustl.edu	37	11	105850546	105850546	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	105850546	105850546	C	T	SNP	GRIA4	ENST00000533094	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.006	-	-	-	no_errors	GRIA4	HGNC	ENSG00000152578				15	0	0	9	4	30.7692
CTR9	0	genome.wustl.edu	37	11	10794800	10794800	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	10794800	10794800	A	G	SNP	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	missense	c.2707	p.R903G	0.976	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				73	0	0	49	23	31.9444
NPAT	0	genome.wustl.edu	37	11	108043984	108043984	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	108043984	108043984	T	C	SNP	NPAT	ENST00000278612	human	ensembl	74_37	-1	known	missense	c.1727	p.H576R	0.462	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308				64	0	0	42	24	36.3636
ATM	0	genome.wustl.edu	37	11	108143578	108143578	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	108143578	108143578	A	G	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.3283	p.R1095G	0.994	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				103	0	0	49	13	20.9677
MUC2	0	genome.wustl.edu	37	11	1094755	1094755	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	1094755	1094755	C	T	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	missense	c.5843	p.T1948M	0.005	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				191	0	0	167	50	23.0415
SIK2	0	genome.wustl.edu	37	11	111593411	111593411	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	111593411	111593411	C	T	SNP	SIK2	ENST00000304987	human	ensembl	74_37	+1	known	missense	c.2078	p.A693V	1.000	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145				168	0	0	107	24	18.3206
ZW10	0	genome.wustl.edu	37	11	113618308	113618308	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	113618308	113618308	T	C	SNP	ZW10	ENST00000200135	human	ensembl	74_37	-1	known	missense	c.1217	p.D406G	1.000	pfam_RZZ-complex_Zw10	pfam_RZZ-complex_Zw10	-	no_errors	ZW10	HGNC	ENSG00000086827				209	0	0	117	46	28.2209
RNF214	0	genome.wustl.edu	37	11	117153534	117153534	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	117153534	117153534	G	A	SNP	RNF214	ENST00000300650	human	ensembl	74_37	+1	known	missense	c.1918	p.A640T	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF214	HGNC	ENSG00000167257				79	0	0	68	18	20.9302
KMT2A	0	genome.wustl.edu	37	11	118391558	118391558	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	118391558	118391558	G	A	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.11462	p.R3821Q	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				49	0	0	42	10	19.2308
BCL9L	0	genome.wustl.edu	37	11	118769762	118769762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	118769762	118769762	G	A	SNP	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	missense	c.3862	p.R1288C	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				28	0	0	39	9	18.75
HINFP	0	genome.wustl.edu	37	11	119004838	119004838	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	119004838	119004838	G	A	SNP	HINFP	ENST00000350777	human	ensembl	74_37	+1	known	missense	c.1184	p.R395H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HINFP	HGNC	ENSG00000172273				96	0	0	74	26	26
USP2	0	genome.wustl.edu	37	11	119228271	119228271	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	119228271	119228271	G	A	SNP	USP2	ENST00000260187	human	ensembl	74_37	-1	known	nonsense	c.1531	p.R511*	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP2	HGNC	ENSG00000036672				104	0	0	81	28	25.6881
DKK3	0	genome.wustl.edu	37	11	12029928	12029928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	12029928	12029928	C	T	SNP	DKK3	ENST00000326932	human	ensembl	74_37	-1	known	missense	c.202	p.A68T	1.000	NULL	pfam_Dickkopf_N	-	no_errors	DKK3	HGNC	ENSG00000050165				36	0	0	18	14	43.75
SORL1	0	genome.wustl.edu	37	11	121475017	121475017	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	121475017	121475017	T	C	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	silent	c.4635	p.D1545	0.854	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				89	0	0	73	18	19.7802
OR4D5	0	genome.wustl.edu	37	11	123810952	123810952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	123810952	123810952	G	A	SNP	OR4D5	ENST00000307033	human	ensembl	74_37	+1	known	missense	c.629	p.C210Y	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D5	HGNC	ENSG00000171014				284	0	0	223	74	24.9158
OR10G4	0	genome.wustl.edu	37	11	123886567	123886567	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	123886567	123886567	T	G	SNP	OR10G4	ENST00000320891	human	ensembl	74_37	+1	known	missense	c.286	p.C96G	0.917	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737				72	0	0	55	18	24.6575
OR10G7	0	genome.wustl.edu	37	11	123909354	123909354	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	123909354	123909354	A	G	SNP	OR10G7	ENST00000330487	human	ensembl	74_37	-1	known	missense	c.355	p.Y119H	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G7	HGNC	ENSG00000182634				199	0	0	158	36	18.5567
OR8G1	0	genome.wustl.edu	37	11	124121072	124121072	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	124121072	124121072	C	T	SNP	OR8G1	ENST00000341493	human	ensembl	74_37	+1	known	missense	c.650	p.S217F	0.029	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8G1	HGNC	ENSG00000197849				114	0	0	58	23	28.3951
CHEK1	0	genome.wustl.edu	37	11	125523731	125523731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	125523731	125523731	C	T	SNP	CHEK1	ENST00000438015	human	ensembl	74_37	+1	known	missense	c.1324	p.R442W	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK1	HGNC	ENSG00000149554				64	0	0	41	14	25.4545
ARHGAP32	0	genome.wustl.edu	37	11	128840993	128840993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	128840993	128840993	G	A	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	missense	c.4073	p.A1358V	0.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				67	0	0	65	12	15.5844
ADAMTS15	0	genome.wustl.edu	37	11	130332143	130332143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	130332143	130332143	G	A	SNP	ADAMTS15	ENST00000299164	human	ensembl	74_37	+1	known	missense	c.1252	p.G418R	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS,prints_Pept_M12B_ADAM-TS8	-	no_errors	ADAMTS15	HGNC	ENSG00000166106				62	0	0	36	13	26.5306
SNX19	0	genome.wustl.edu	37	11	130785480	130785480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	130785480	130785480	G	A	SNP	SNX19	ENST00000265909	human	ensembl	74_37	-1	known	missense	c.355	p.R119C	0.059	pfam_Phox_assoc,smart_PX_assoc_Snx13,pfscan_Phox_assoc	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,superfamily_Phox,smart_PX_assoc_Snx13,smart_Phox,pfscan_Phox,pfscan_Phox_assoc	-	no_errors	SNX19	HGNC	ENSG00000120451				67	0	0	53	24	31.1688
NTM	0	genome.wustl.edu	37	11	132205024	132205024	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	132205024	132205024	T	C	SNP	NTM	ENST00000539799	human	ensembl	74_37	+1	known	missense	c.1052	p.L351P	0.937	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NTM	HGNC	ENSG00000182667				90	0	0	80	24	23.0769
GLB1L3	0	genome.wustl.edu	37	11	134179567	134179567	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	134179567	134179567	A	G	SNP	GLB1L3	ENST00000431683	human	ensembl	74_37	+1	known	missense	c.1009	p.N337D	0.999	pfam_Glycoside_Hdrlase_35,superfamily_Glycoside_hydrolase_SF,prints_Glycoside_Hdrlase_35	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L3	HGNC	ENSG00000166105				31	0	0	16	9	36
SPON1	0	genome.wustl.edu	37	11	14284280	14284280	+	RNA	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	14284280	14284280	G	T	SNP	SPON1	ENST00000310358	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268				59	0	0	45	10	18.1818
SOX6	0	genome.wustl.edu	37	11	15994374	15994374	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	15994374	15994374	T	G	SNP	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	missense	c.2468	p.E823A	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				130	0	0	76	27	26.2136
PIK3C2A	0	genome.wustl.edu	37	11	17170280	17170280	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	17170280	17170280	T	C	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	missense	c.1382	p.D461G	1.000	pfam_PI3K_Ras-bd_dom,smart_PI3K_Ras-bd_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				33	0	0	27	10	27.027
SYT8	0	genome.wustl.edu	37	11	1858494	1858494	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	1858494	1858494	C	A	SNP	SYT8	ENST00000381968	human	ensembl	74_37	+1	known	missense	c.1039	p.L347M	0.246	superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT8	HGNC	ENSG00000149043				39	0	0	34	11	24.4444
NAV2	0	genome.wustl.edu	37	11	20129269	20129269	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	20129269	20129269	G	A	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.7078	p.D2360N	1.000	superfamily_P-loop_NTPase	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				425	1	0.234742	289	112	27.9302
ANO5	0	genome.wustl.edu	37	11	22257743	22257743	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	22257743	22257743	T	C	SNP	ANO5	ENST00000324559	human	ensembl	74_37	+1	known	missense	c.683	p.I228T	0.037	NULL	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714				61	0	0	41	19	31.6667
KCNQ1OT1	0	genome.wustl.edu	37	11	2683459	2683459	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	2683459	2683459	C	T	SNP	KCNQ1OT1	ENST00000597346	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KCNQ1OT1	HGNC	ENSG00000269821				20	0	0	20	5	20
METTL15	0	genome.wustl.edu	37	11	28135070	28135070	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	28135070	28135070	A	T	SNP	METTL15	ENST00000303459	human	ensembl	74_37	+1	known	missense	c.189	p.R63S	0.002	NULL	pfam_RsmH,superfamily_SAM-dep_MeTrfase_MraW_recog,tigrfam_RsmH	-	no_errors	METTL15	HGNC	ENSG00000169519				63	0	0	39	14	26.4151
ATHL1	0	genome.wustl.edu	37	11	294564	294564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	294564	294564	G	A	SNP	ATHL1	ENST00000409548	human	ensembl	74_37	+1	known	missense	c.2029	p.V677I	0.271	NULL	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102				166	0	0	136	57	29.5337
DCDC1	0	genome.wustl.edu	37	11	30900223	30900223	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	30900223	30900223	C	T	SNP	DCDC1	ENST00000597505	human	ensembl	74_37	-1	putative	missense	c.5260	p.A1754T	0.973	NULL	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Doublecortin_dom,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959				59	0	0	41	9	18
DCDC1	0	genome.wustl.edu	37	11	30974099	30974099	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	30974099	30974099	C	T	SNP	DCDC1	ENST00000597505	human	ensembl	74_37	-1	putative	missense	c.2608	p.E870K	0.952	NULL	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Doublecortin_dom,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959				10	0	0	10	6	37.5
FJX1	0	genome.wustl.edu	37	11	35640853	35640853	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	35640853	35640853	G	A	SNP	FJX1	ENST00000317811	human	ensembl	74_37	+1	known	silent	c.669	p.A223	0.988	NULL	pfam_DUF1193	-	no_errors	FJX1	HGNC	ENSG00000179431				16	0	0	13	4	23.5294
NUP98	0	genome.wustl.edu	37	11	3697576	3697576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	3697576	3697576	C	T	SNP	NUP98	ENST00000324932	human	ensembl	74_37	-1	known	missense	c.5216	p.R1739H	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713				94	0	0	76	26	25.4902
B4GALNT4	0	genome.wustl.edu	37	11	377213	377213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	377213	377213	G	A	SNP	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	missense	c.2090	p.R697H	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				15	0	0	9	3	25
STIM1	0	genome.wustl.edu	37	11	3877513	3877513	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	3877513	3877513	G	A	SNP	STIM1	ENST00000300737	human	ensembl	74_37	+1	known	missense	c.13	p.V5I	0.863	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323				133	0	0	89	35	28.2258
ALKBH3	0	genome.wustl.edu	37	11	43923081	43923081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	43923081	43923081	C	T	SNP	ALKBH3	ENST00000302708	human	ensembl	74_37	+1	known	missense	c.475	p.R159C	0.631	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH3	HGNC	ENSG00000166199				135	0	0	71	23	24.4681
CD82	0	genome.wustl.edu	37	11	44640247	44640247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	44640247	44640247	G	A	SNP	CD82	ENST00000227155	human	ensembl	74_37	+1	known	missense	c.700	p.V234M	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD82	HGNC	ENSG00000085117				79	0	0	65	22	25.2874
PHF21A	0	genome.wustl.edu	37	11	45991420	45991420	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	45991420	45991420	T	C	SNP	PHF21A	ENST00000257821	human	ensembl	74_37	-1	known	silent	c.648	p.V216	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF21A	HGNC	ENSG00000135365				43	0	0	16	13	44.8276
CHRM4	0	genome.wustl.edu	37	11	46407532	46407532	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	46407532	46407532	G	A	SNP	CHRM4	ENST00000433765	human	ensembl	74_37	-1	known	silent	c.576	p.N192	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720				37	0	0	24	9	27.2727
NUP160	0	genome.wustl.edu	37	11	47827774	47827774	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	47827774	47827774	G	T	SNP	NUP160	ENST00000378460	human	ensembl	74_37	-1	known	missense	c.2537	p.P846H	0.998	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066				77	0	0	55	15	21.4286
LOC440040	0	genome.wustl.edu	37	11	49598070	49598070	+	RNA	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	49598070	49598070	G	T	SNP	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035				42	0	0	32	7	17.9487
OR51L1	0	genome.wustl.edu	37	11	5020589	5020589	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	5020589	5020589	T	C	SNP	OR51L1	ENST00000321543	human	ensembl	74_37	+1	known	missense	c.377	p.V126A	0.996	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51L1	HGNC	ENSG00000176798				251	0	0	146	63	30.1435
OR51B6	0	genome.wustl.edu	37	11	5373560	5373560	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	5373560	5373560	A	T	SNP	OR51B6	ENST00000380219	human	ensembl	74_37	+1	known	missense	c.823	p.S275C	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR51B6	HGNC	ENSG00000176239				161	0	0	85	35	29.1667
UBQLN3	0	genome.wustl.edu	37	11	5529845	5529845	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	5529845	5529845	C	A	SNP	UBQLN3	ENST00000311659	human	ensembl	74_37	-1	known	missense	c.944	p.S315I	0.012	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520				86	0	0	75	5	6.25
OR4C15	0	genome.wustl.edu	37	11	55322291	55322291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	55322291	55322291	C	T	SNP	OR4C15	ENST00000314644	human	ensembl	74_37	+1	known	missense	c.509	p.A170V	0.016	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939				160	0	0	100	37	27.0073
OR5W2	0	genome.wustl.edu	37	11	55681359	55681359	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	55681359	55681359	T	C	SNP	OR5W2	ENST00000344514	human	ensembl	74_37	-1	known	missense	c.700	p.R234G	0.576	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612				75	0	0	53	14	20.8955
OR10AG1	0	genome.wustl.edu	37	11	55735082	55735082	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	55735082	55735082	T	A	SNP	OR10AG1	ENST00000312345	human	ensembl	74_37	-1	known	missense	c.858	p.K286N	0.999	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970				36	0	0	26	15	36.5854
OR8I2	0	genome.wustl.edu	37	11	55861422	55861422	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	55861422	55861422	C	T	SNP	OR8I2	ENST00000302124	human	ensembl	74_37	+1	known	silent	c.639	p.I213	0.006	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8I2	HGNC	ENSG00000172154				114	0	0	83	29	25.8929
SMTNL1	0	genome.wustl.edu	37	11	57310769	57310769	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	57310769	57310769	C	T	SNP	SMTNL1	ENST00000457912	human	ensembl	74_37	+1	known	silent	c.708	p.P236	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTNL1	HGNC	ENSG00000214872				59	0	0	39	12	23.5294
OR52N2	0	genome.wustl.edu	37	11	5841795	5841795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	5841795	5841795	C	T	SNP	OR52N2	ENST00000317037	human	ensembl	74_37	+1	known	missense	c.230	p.T77I	0.116	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52N2	HGNC	ENSG00000180988				184	0	0	121	42	25.7669
OR52N2	0	genome.wustl.edu	37	11	5841886	5841886	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	5841886	5841886	T	C	SNP	OR52N2	ENST00000317037	human	ensembl	74_37	+1	known	silent	c.321	p.H107	0.010	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52N2	HGNC	ENSG00000180988				158	0	0	93	27	22.5
OR52E8	0	genome.wustl.edu	37	11	5878878	5878878	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	5878878	5878878	G	T	SNP	OR52E8	ENST00000537935	human	ensembl	74_37	-1	known	missense	c.55	p.L19I	0.924	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E8	HGNC	ENSG00000183269				182	0	0	116	24	17.1429
MS4A3	0	genome.wustl.edu	37	11	59828514	59828514	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	59828514	59828514	A	G	SNP	MS4A3	ENST00000526199	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	MS4A3	HGNC	ENSG00000149516				27	0	0	10	9	47.3684
TMEM109	0	genome.wustl.edu	37	11	60687353	60687353	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	60687353	60687353	G	T	SNP	TMEM109	ENST00000227525	human	ensembl	74_37	+1	known	missense	c.188	p.G63V	0.001	NULL	NULL	-	no_errors	TMEM109	HGNC	ENSG00000110108				126	0	0	77	28	26.6667
CYB561A3	0	genome.wustl.edu	37	11	61124253	61124253	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	61124253	61124253	C	T	SNP	CYB561A3	ENST00000535152	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYB561A3	HGNC	ENSG00000162144				51	0	0	20	7	25.9259
SYT7	0	genome.wustl.edu	37	11	61323632	61323632	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	61323632	61323632	T	G	SNP	SYT7	ENST00000263846	human	ensembl	74_37	-1	known	missense	c.79	p.S27R	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT7	HGNC	ENSG00000011347				35	0	0	30	15	33.3333
RAB3IL1	0	genome.wustl.edu	37	11	61675532	61675532	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	61675532	61675532	C	T	SNP	RAB3IL1	ENST00000394836	human	ensembl	74_37	-1	known	silent	c.258	p.A86	0.953	NULL	pfam_Sec2p	-	no_errors	RAB3IL1	HGNC	ENSG00000167994				103	0	0	85	25	22.7273
INCENP	0	genome.wustl.edu	37	11	61897762	61897762	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	61897762	61897762	T	C	SNP	INCENP	ENST00000394818	human	ensembl	74_37	+1	known	missense	c.763	p.S255P	0.840	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503				123	0	0	109	44	28.7582
AHNAK	0	genome.wustl.edu	37	11	62290261	62290261	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	62290261	62290261	A	G	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	silent	c.11628	p.P3876	0.424	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				424	0	0	290	89	23.4828
CCKBR	0	genome.wustl.edu	37	11	6291484	6291484	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	6291484	6291484	C	T	SNP	CCKBR	ENST00000525462	human	ensembl	74_37	+1	known	silent	c.570	p.P190	0.008	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	CCKBR	HGNC	ENSG00000110148				111	0	0	89	37	29.3651
TRPT1	0	genome.wustl.edu	37	11	63992129	63992129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	63992129	63992129	G	A	SNP	TRPT1	ENST00000394546	human	ensembl	74_37	-1	known	missense	c.394	p.H132Y	1.000	pfam_Ptrans_KptA/Tpt1	pfam_Ptrans_KptA/Tpt1	-	no_errors	TRPT1	HGNC	ENSG00000149743				92	0	0	63	21	25
GPR137	0	genome.wustl.edu	37	11	64054482	64054482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	64054482	64054482	G	A	SNP	GPR137	ENST00000313074	human	ensembl	74_37	+1	known	missense	c.403	p.G135S	1.000	NULL	NULL	-	no_errors	GPR137	HGNC	ENSG00000173264				44	0	0	39	9	18.75
NRXN2	0	genome.wustl.edu	37	11	64418771	64418771	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	64418771	64418771	G	T	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.2874	p.N958K	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				78	0	0	84	5	5.61798
NRXN2	0	genome.wustl.edu	37	11	64453315	64453315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	64453315	64453315	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.955	p.R319C	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				162	0	0	119	39	24.6835
AP5B1	0	genome.wustl.edu	37	11	65546326	65546326	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	65546326	65546326	C	T	SNP	AP5B1	ENST00000532090	human	ensembl	74_37	-1	novel	silent	c.1638	p.K546	0.002	NULL	NULL	-	no_errors	AP5B1	HGNC	ENSG00000254470				39	0	0	29	11	27.5
DNHD1	0	genome.wustl.edu	37	11	6592577	6592577	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	6592577	6592577	C	A	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	missense	c.13835	p.P4612H	0.008	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532				30	0	0	12	5	29.4118
YIF1A	0	genome.wustl.edu	37	11	66052202	66052202	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	66052202	66052202	A	G	SNP	YIF1A	ENST00000376901	human	ensembl	74_37	-1	known	missense	c.788	p.V263A	0.007	pfam_Hrf1	pfam_Hrf1,pfam_Yip1	-	no_errors	YIF1A	HGNC	ENSG00000174851				43	0	0	31	14	31.1111
CD248	0	genome.wustl.edu	37	11	66083578	66083578	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	66083578	66083578	C	T	SNP	CD248	ENST00000311330	human	ensembl	74_37	-1	known	silent	c.921	p.P307	0.001	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_C-type_lectin,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807				72	0	0	47	10	17.5439
SLC29A2	0	genome.wustl.edu	37	11	66131805	66131805	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	66131805	66131805	A	G	SNP	SLC29A2	ENST00000357440	human	ensembl	74_37	-1	known	missense	c.1150	p.S384P	0.083	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,tigrfam_Eqnu_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt	-	no_errors	SLC29A2	HGNC	ENSG00000174669				41	0	0	38	19	33.3333
NPAS4	0	genome.wustl.edu	37	11	66191809	66191809	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	66191809	66191809	G	T	SNP	NPAS4	ENST00000311034	human	ensembl	74_37	+1	known	missense	c.1448	p.S483I	0.997	NULL	pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576				458	0	0	304	104	25.4902
ILK	0	genome.wustl.edu	37	11	6629531	6629531	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	6629531	6629531	C	T	SNP	ILK	ENST00000528784	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.047	-	-	-	no_errors	ILK	HGNC	ENSG00000166333				47	0	0	29	15	34.0909
KDM2A	0	genome.wustl.edu	37	11	67018168	67018168	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	67018168	67018168	C	T	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	silent	c.2667	p.D889	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				108	0	0	75	34	31.1927
SSH3	0	genome.wustl.edu	37	11	67075058	67075058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	67075058	67075058	C	T	SNP	SSH3	ENST00000308127	human	ensembl	74_37	+1	known	missense	c.641	p.A214V	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830				86	0	0	60	20	25
CORO1B	0	genome.wustl.edu	37	11	67208817	67208817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	67208817	67208817	C	T	SNP	CORO1B	ENST00000341356	human	ensembl	74_37	-1	known	missense	c.623	p.G208D	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1B	HGNC	ENSG00000172725				157	0	0	125	49	28.1609
MYEOV	0	genome.wustl.edu	37	11	69063839	69063839	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	69063839	69063839	A	C	SNP	MYEOV	ENST00000308946	human	ensembl	74_37	+1	known	missense	c.922	p.I308L	0.000	NULL	NULL	-	no_errors	MYEOV	HGNC	ENSG00000172927				8	0	0	9	3	25
KRTAP5-7	0	genome.wustl.edu	37	11	71238828	71238828	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	71238828	71238828	G	C	SNP	KRTAP5-7	ENST00000398536	human	ensembl	74_37	+1	known	missense	c.482	p.C161S	0.982	NULL	NULL	-	no_errors	KRTAP5-7	HGNC	ENSG00000244411				323	0	0	198	85	30.0353
CLPB	0	genome.wustl.edu	37	11	72004429	72004429	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	72004429	72004429	C	A	SNP	CLPB	ENST00000294053	human	ensembl	74_37	-1	known	missense	c.2106	p.K702N	1.000	NULL	pfam_ATPase_AAA-2,pfam_Ankyrin_rpt,pfam_Clp_ATPase_C,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,pfam_Zeta_toxin_domain,pfam_Sigma_54_int,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_AAA+_ATPase,prints_ClpA/B,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CLPB	HGNC	ENSG00000162129				83	0	0	57	32	35.9551
ARHGEF17	0	genome.wustl.edu	37	11	73021308	73021308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	73021308	73021308	G	A	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	missense	c.1625	p.R542Q	0.957	superfamily_Vinculin/catenin	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				89	0	0	56	24	30
DGAT2	0	genome.wustl.edu	37	11	75480014	75480014	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	75480014	75480014	C	T	SNP	DGAT2	ENST00000605608	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DGAT2	HGNC	ENSG00000062282				15	0	0	12	6	33.3333
DGAT2	0	genome.wustl.edu	37	11	75511517	75511517	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	75511517	75511517	C	T	SNP	DGAT2	ENST00000228027	human	ensembl	74_37	+1	known	silent	c.1131	p.F377	0.398	pfam_DAGAT	pfam_DAGAT	-	no_errors	DGAT2	HGNC	ENSG00000062282				45	0	0	24	12	33.3333
UVRAG	0	genome.wustl.edu	37	11	75852185	75852185	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	75852185	75852185	A	G	SNP	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	missense	c.1828	p.S610G	0.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382				73	0	0	76	22	22.449
B3GNT6	0	genome.wustl.edu	37	11	76751336	76751336	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	76751336	76751336	C	T	SNP	B3GNT6	ENST00000533140	human	ensembl	74_37	+1	known	silent	c.741	p.S247	0.086	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT6	HGNC	ENSG00000198488				14	0	0	17	9	34.6154
FAT3	0	genome.wustl.edu	37	11	92087572	92087572	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	92087572	92087572	T	C	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.2294	p.I765T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				147	0	0	85	41	32.5397
SLC36A4	0	genome.wustl.edu	37	11	92930964	92930964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	92930964	92930964	G	A	SNP	SLC36A4	ENST00000326402	human	ensembl	74_37	-1	known	missense	c.35	p.A12V	0.006	NULL	pfam_AA_transpt_TM	-	no_errors	SLC36A4	HGNC	ENSG00000180773				16	0	0	21	8	27.5862
MAML2	0	genome.wustl.edu	37	11	95724831	95724831	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	95724831	95724831	G	A	SNP	MAML2	ENST00000524717	human	ensembl	74_37	-1	known	silent	c.2196	p.C732	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384				75	0	0	80	19	19.1919
WEE1	0	genome.wustl.edu	37	11	9598763	9598763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	9598763	9598763	C	T	SNP	WEE1	ENST00000450114	human	ensembl	74_37	+1	known	missense	c.1094	p.A365V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	-	no_errors	WEE1	HGNC	ENSG00000166483				97	0	0	57	25	30.4878
ASCL1	0	genome.wustl.edu	37	12	103352643	103352643	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	103352643	103352643	G	A	SNP	ASCL1	ENST00000266744	human	ensembl	74_37	+1	known	silent	c.621	p.S207	0.992	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ASCL1	HGNC	ENSG00000139352				83	0	0	77	17	18.0851
EID3	0	genome.wustl.edu	37	12	104697811	104697811	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	104697811	104697811	C	T	SNP	EID3	ENST00000527879	human	ensembl	74_37	+1	known	silent	c.99	p.D33	0.119	NULL	pfam_Nse4_C	-	no_errors	EID3	HGNC	ENSG00000255150				54	0	0	45	11	19.6429
TCP11L2	0	genome.wustl.edu	37	12	106729528	106729528	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	106729528	106729528	T	C	SNP	TCP11L2	ENST00000299045	human	ensembl	74_37	+1	known	missense	c.884	p.L295P	1.000	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046				93	0	0	48	21	30.4348
FICD	0	genome.wustl.edu	37	12	108912982	108912982	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	108912982	108912982	C	T	SNP	FICD	ENST00000552695	human	ensembl	74_37	+1	known	silent	c.1107	p.N369	0.996	pfam_Fido,superfamily_Fido	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855				153	0	0	119	29	19.5946
SART3	0	genome.wustl.edu	37	12	108919341	108919341	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	108919341	108919341	A	G	SNP	SART3	ENST00000228284	human	ensembl	74_37	-1	known	missense	c.2416	p.S806P	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856				92	0	0	60	29	32.5843
SART3	0	genome.wustl.edu	37	12	108932768	108932768	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	108932768	108932768	C	T	SNP	SART3	ENST00000228284	human	ensembl	74_37	-1	known	missense	c.1004	p.R335H	1.000	smart_HAT	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856				91	0	0	66	16	19.5122
USP30	0	genome.wustl.edu	37	12	109523603	109523603	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	109523603	109523603	T	C	SNP	USP30	ENST00000257548	human	ensembl	74_37	+1	known	missense	c.1421	p.L474P	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP30	HGNC	ENSG00000135093				130	0	0	84	18	17.6471
PPTC7	0	genome.wustl.edu	37	12	110983821	110983821	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	110983821	110983821	G	T	SNP	PPTC7	ENST00000354300	human	ensembl	74_37	-1	known	missense	c.466	p.L156M	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPTC7	HGNC	ENSG00000196850				82	0	0	61	19	23.75
ALDH2	0	genome.wustl.edu	37	12	112219773	112219773	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	112219773	112219773	A	G	SNP	ALDH2	ENST00000261733	human	ensembl	74_37	+1	known	missense	c.166	p.T56A	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH2	HGNC	ENSG00000111275				95	0	0	55	13	19.1176
HECTD4	0	genome.wustl.edu	37	12	112638474	112638474	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	112638474	112638474	G	A	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	silent	c.8019	p.V2673	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				61	0	0	34	13	27.6596
OAS3	0	genome.wustl.edu	37	12	113403603	113403603	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	113403603	113403603	G	A	SNP	OAS3	ENST00000228928	human	ensembl	74_37	+1	known	missense	c.2458	p.V820M	0.977	pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331				46	0	0	41	7	14.5833
DTX1	0	genome.wustl.edu	37	12	113533182	113533182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	113533182	113533182	G	A	SNP	DTX1	ENST00000257600	human	ensembl	74_37	+1	known	missense	c.1601	p.R534H	1.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144				114	0	0	88	39	30.7087
DDX54	0	genome.wustl.edu	37	12	113617008	113617008	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	113617008	113617008	G	A	SNP	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	silent	c.504	p.R168	0.005	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064				49	0	0	38	12	24
PRB4	0	genome.wustl.edu	37	12	11461619	11461619	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	11461619	11461619	C	A	SNP	PRB4	ENST00000279575	human	ensembl	74_37	-1	known	nonsense	c.298	p.E100*	0.001	NULL	NULL	-	no_errors	PRB4	HGNC	ENSG00000230657				630	0	0	572	64	10.0629
RNFT2	0	genome.wustl.edu	37	12	117290627	117290627	+	RNA	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	117290627	117290627	C	A	SNP	RNFT2	ENST00000551251	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNFT2	HGNC	ENSG00000135119				29	0	0	30	4	11.7647
NOS1	0	genome.wustl.edu	37	12	117768386	117768386	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	117768386	117768386	G	A	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	silent	c.489	p.Y163	0.000	pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				135	0	0	120	38	24.0506
KSR2	0	genome.wustl.edu	37	12	117962957	117962957	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	117962957	117962957	A	G	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	missense	c.1919	p.L640P	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435				62	0	0	55	19	25.6757
C12orf43	0	genome.wustl.edu	37	12	121448890	121448890	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	121448890	121448890	C	T	SNP	C12orf43	ENST00000537817	human	ensembl	74_37	-1	novel	missense	c.115	p.V39I	0.000	NULL	NULL	-	no_errors	C12orf43	HGNC	ENSG00000157895				93	0	0	64	26	28.8889
P2RX4	0	genome.wustl.edu	37	12	121655008	121655008	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	121655008	121655008	A	G	SNP	P2RX4	ENST00000337233	human	ensembl	74_37	+1	known	missense	c.206	p.K69R	1.000	pfam_P2X_purnocptor,prints_P2X1_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X4_purnocptor,prints_P2X_purnocptor,prints_P2X1_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX4	HGNC	ENSG00000135124				247	0	0	167	49	22.6852
KNTC1	0	genome.wustl.edu	37	12	123087723	123087723	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	123087723	123087723	A	G	SNP	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	silent	c.5034	p.L1678	0.001	pfam_RZZ-complex_KNTC1/ROD_C	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				21	0	0	21	8	27.5862
HIP1R	0	genome.wustl.edu	37	12	123333368	123333368	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	123333368	123333368	G	A	SNP	HIP1R	ENST00000253083	human	ensembl	74_37	+1	known	missense	c.326	p.R109H	1.000	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1R	HGNC	ENSG00000130787				80	0	0	63	24	27.5862
PITPNM2	0	genome.wustl.edu	37	12	123472815	123472815	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	123472815	123472815	T	A	SNP	PITPNM2	ENST00000320201	human	ensembl	74_37	-1	known	missense	c.2963	p.K988M	1.000	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM2	HGNC	ENSG00000090975				194	0	0	181	56	23.6287
DNAH10	0	genome.wustl.edu	37	12	124325995	124325995	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	124325995	124325995	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.4909	p.V1637M	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				152	0	0	104	40	27.7778
DNAH10	0	genome.wustl.edu	37	12	124419227	124419227	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	124419227	124419227	C	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.13183	p.L4395I	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				42	0	0	27	14	34.1463
TMEM132D	0	genome.wustl.edu	37	12	130184667	130184667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	130184667	130184667	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.656	p.P219L	0.000	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				87	0	0	64	26	28.8889
MMP17	0	genome.wustl.edu	37	12	132325159	132325159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	132325159	132325159	C	T	SNP	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	missense	c.464	p.T155M	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598				169	0	0	142	31	17.9191
EP400	0	genome.wustl.edu	37	12	132508377	132508377	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	132508377	132508377	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.4854	p.R1618	0.019	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				69	0	0	52	10	16.129
ANKLE2	0	genome.wustl.edu	37	12	133312082	133312082	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	133312082	133312082	T	G	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	missense	c.1610	p.K537T	0.150	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915				150	0	0	90	31	25.6198
CACNA2D4	0	genome.wustl.edu	37	12	1904923	1904923	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	1904923	1904923	G	A	SNP	CACNA2D4	ENST00000382722	human	ensembl	74_37	-1	known	missense	c.3137	p.P1046L	0.876	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D4	HGNC	ENSG00000151062				139	0	0	109	31	22.1429
SLCO1C1	0	genome.wustl.edu	37	12	20886040	20886040	+	Splice_Site	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	20886040	20886040	T	C	SNP	SLCO1C1	ENST00000381552	human	ensembl	74_37	+1	known	splice_site	c.1382+2	e9+2	1.000	-	-	-	no_errors	SLCO1C1	HGNC	ENSG00000139155				128	0	0	69	34	33.0097
BCAT1	0	genome.wustl.edu	37	12	25054761	25054761	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	25054761	25054761	A	G	SNP	BCAT1	ENST00000261192	human	ensembl	74_37	-1	known	missense	c.65	p.V22A	0.000	superfamily_Aminotrans_IV,pirsf_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT1	HGNC	ENSG00000060982				35	0	0	35	10	22.2222
PPFIBP1	0	genome.wustl.edu	37	12	27840346	27840346	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	27840346	27840346	G	A	SNP	PPFIBP1	ENST00000318304	human	ensembl	74_37	+1	known	missense	c.2294	p.S765N	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841				105	0	0	82	27	24.7706
ITFG2	0	genome.wustl.edu	37	12	2929298	2929298	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	2929298	2929298	G	T	SNP	ITFG2	ENST00000537851	human	ensembl	74_37	+1	known	missense	c.143	p.W48L	0.999	NULL	NULL	-	no_errors	ITFG2	HGNC	ENSG00000111203				59	0	0	44	13	22.807
FOXM1	0	genome.wustl.edu	37	12	2983629	2983629	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	2983629	2983629	G	A	SNP	FOXM1	ENST00000342628	human	ensembl	74_37	-1	known	missense	c.16	p.R6C	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206				178	0	0	120	56	31.8182
SLC6A12	0	genome.wustl.edu	37	12	310931	310931	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	310931	310931	C	A	SNP	SLC6A12	ENST00000359674	human	ensembl	74_37	-1	known	missense	c.575	p.W192L	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_betaine	-	no_errors	SLC6A12	HGNC	ENSG00000111181				107	0	0	54	13	19.403
C12orf5	0	genome.wustl.edu	37	12	4460518	4460518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	4460518	4460518	C	T	SNP	C12orf5	ENST00000179259	human	ensembl	74_37	+1	known	missense	c.356	p.P119L	0.946	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1	-	no_errors	C12orf5	HGNC	ENSG00000078237				70	0	0	52	20	27.7778
AKAP3	0	genome.wustl.edu	37	12	4737317	4737317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	4737317	4737317	C	T	SNP	AKAP3	ENST00000228850	human	ensembl	74_37	-1	known	missense	c.751	p.G251R	0.764	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP3	HGNC	ENSG00000111254				142	0	0	84	24	22.2222
TMEM106C	0	genome.wustl.edu	37	12	48359632	48359632	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	48359632	48359632	T	C	SNP	TMEM106C	ENST00000429772	human	ensembl	74_37	+1	known	missense	c.263	p.V88A	1.000	pfam_DUF1356_TMEM106	pfam_DUF1356_TMEM106	-	no_errors	TMEM106C	HGNC	ENSG00000134291				691	0	0	397	184	31.6695
ZNF641	0	genome.wustl.edu	37	12	48736761	48736761	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	48736761	48736761	A	G	SNP	ZNF641	ENST00000301042	human	ensembl	74_37	-1	known	missense	c.1312	p.F438L	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF641	HGNC	ENSG00000167528				79	0	0	65	18	21.6867
KMT2D	0	genome.wustl.edu	37	12	49434333	49434333	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	49434333	49434333	G	T	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.7220	p.P2407H	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				42	0	0	28	18	39.1304
KMT2D	0	genome.wustl.edu	37	12	49441849	49441849	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	49441849	49441849	T	C	SNP	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	missense	c.4135	p.M1379V	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				67	0	0	68	5	6.84932
CERS5	0	genome.wustl.edu	37	12	50524461	50524461	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	50524461	50524461	C	T	SNP	CERS5	ENST00000317551	human	ensembl	74_37	-1	known	missense	c.1046	p.R349H	1.000	pirsf_Longevity_assurance_LAG1_LAC1	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS5	HGNC	ENSG00000139624				134	0	0	84	26	23.6364
LARP4	0	genome.wustl.edu	37	12	50867242	50867242	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	50867242	50867242	G	A	SNP	LARP4	ENST00000429001	human	ensembl	74_37	+1	known	silent	c.1608	p.E536	0.574	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4	HGNC	ENSG00000161813				67	0	0	37	13	26
NR4A1	0	genome.wustl.edu	37	12	52448164	52448164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	52448164	52448164	C	T	SNP	NR4A1	ENST00000545748	human	ensembl	74_37	+1	known	missense	c.214	p.R72C	0.999	prints_Nuc_orp_HMR_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Nuc_orp_HMR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR4A1	HGNC	ENSG00000123358				87	0	0	84	19	18.4466
KRT82	0	genome.wustl.edu	37	12	52799986	52799986	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	52799986	52799986	G	T	SNP	KRT82	ENST00000257974	human	ensembl	74_37	-1	known	silent	c.76	p.R26	0.268	NULL	pfam_IF,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT82	HGNC	ENSG00000161850				43	0	0	32	9	21.9512
KRT1	0	genome.wustl.edu	37	12	53071182	53071182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	53071182	53071182	C	T	SNP	KRT1	ENST00000252244	human	ensembl	74_37	-1	known	missense	c.1046	p.S349N	0.998	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768				135	0	0	76	32	29.6296
KRT77	0	genome.wustl.edu	37	12	53086240	53086240	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	53086240	53086240	G	A	SNP	KRT77	ENST00000341809	human	ensembl	74_37	-1	known	silent	c.1392	p.A464	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT77	HGNC	ENSG00000189182				128	0	0	93	30	24.3902
ENSG00000257700	0	genome.wustl.edu	37	12	53090244	53090244	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	53090244	53090244	G	A	SNP	ENSG00000257700	ENST00000547533	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	RP11-641A6.3	Clone_based_vega_gene	ENSG00000257700				62	0	0	27	12	30.7692
KRT3	0	genome.wustl.edu	37	12	53189360	53189360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	53189360	53189360	C	T	SNP	KRT3	ENST00000309505	human	ensembl	74_37	-1	known	missense	c.467	p.G156D	0.786	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT3	HGNC	ENSG00000186442				22	0	0	25	5	16.6667
ZNF740	0	genome.wustl.edu	37	12	53578783	53578783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	53578783	53578783	G	A	SNP	ZNF740	ENST00000416904	human	ensembl	74_37	+1	known	missense	c.118	p.E40K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF740	HGNC	ENSG00000139651				70	0	0	51	12	19.0476
NFE2	0	genome.wustl.edu	37	12	54686726	54686726	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	54686726	54686726	A	G	SNP	NFE2	ENST00000312156	human	ensembl	74_37	-1	known	missense	c.554	p.M185T	0.987	NULL	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2	HGNC	ENSG00000123405				171	0	0	97	36	27.0677
OR10P1	0	genome.wustl.edu	37	12	56031396	56031396	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	56031396	56031396	A	G	SNP	OR10P1	ENST00000309675	human	ensembl	74_37	+1	known	missense	c.721	p.T241A	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10P1	HGNC	ENSG00000175398				184	0	0	167	19	10.2151
SLC39A5	0	genome.wustl.edu	37	12	56630230	56630230	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	56630230	56630230	G	A	SNP	SLC39A5	ENST00000266980	human	ensembl	74_37	+1	known	silent	c.996	p.P332	0.139	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A5	HGNC	ENSG00000139540				121	1	0.819672	93	28	23.1405
STAT2	0	genome.wustl.edu	37	12	56748213	56748213	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	56748213	56748213	G	A	SNP	STAT2	ENST00000557156	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	STAT2	HGNC	ENSG00000170581				101	0	0	78	29	27.1028
MARS	0	genome.wustl.edu	37	12	57906610	57906610	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	57906610	57906610	G	A	SNP	MARS	ENST00000262027	human	ensembl	74_37	+1	known	silent	c.1830	p.T610	0.193	pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_WHEP-TRS,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_S15_NS1_RNA-bd,superfamily_Thioredoxin-like_fold,pfscan_WHEP-TRS,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS	HGNC	ENSG00000166986				223	0	0	158	49	23.6715
SCNN1A	0	genome.wustl.edu	37	12	6465050	6465050	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	6465050	6465050	A	G	SNP	SCNN1A	ENST00000536087	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.032	-	-	-	no_errors	SCNN1A	HGNC	ENSG00000111319				165	0	0	111	32	22.3776
WIF1	0	genome.wustl.edu	37	12	65456301	65456301	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	65456301	65456301	A	G	SNP	WIF1	ENST00000286574	human	ensembl	74_37	-1	known	silent	c.786	p.C262	0.992	smart_EG-like_dom	pfam_WIF,pfam_EGF_extracell,smart_WIF,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_WIF,prints_Wnt-inh	-	no_errors	WIF1	HGNC	ENSG00000156076				29	0	0	17	6	26.087
IRAK3	0	genome.wustl.edu	37	12	66641621	66641621	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	66641621	66641621	C	A	SNP	IRAK3	ENST00000261233	human	ensembl	74_37	+1	known	missense	c.1461	p.N487K	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Death_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376				77	0	0	52	14	21.2121
HELB	0	genome.wustl.edu	37	12	66709022	66709022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	66709022	66709022	G	A	SNP	HELB	ENST00000247815	human	ensembl	74_37	+1	known	missense	c.1859	p.G620D	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	HELB	HGNC	ENSG00000127311				37	0	0	30	5	14.2857
RAP1B	0	genome.wustl.edu	37	12	69044187	69044187	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	69044187	69044187	A	G	SNP	RAP1B	ENST00000250559	human	ensembl	74_37	+1	known	missense	c.65	p.Q22R	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP1B	HGNC	ENSG00000127314				13	0	0	14	5	26.3158
CD4	0	genome.wustl.edu	37	12	6923959	6923959	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	6923959	6923959	G	A	SNP	CD4	ENST00000011653	human	ensembl	74_37	+1	known	silent	c.408	p.G136	0.014	pfam_Ig_C2-set,smart_Ig_sub,smart_Ig_sub2	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610				190	0	0	120	47	28.1437
PTPRB	0	genome.wustl.edu	37	12	70928615	70928615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	70928615	70928615	C	T	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	missense	c.6202	p.G2068S	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				48	0	0	33	11	25
PTPRR	0	genome.wustl.edu	37	12	71078009	71078009	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	71078009	71078009	C	A	SNP	PTPRR	ENST00000283228	human	ensembl	74_37	-1	known	silent	c.1395	p.T465	0.000	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233				62	0	0	38	18	32.1429
LGR5	0	genome.wustl.edu	37	12	71977666	71977666	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	71977666	71977666	C	T	SNP	LGR5	ENST00000266674	human	ensembl	74_37	+1	known	nonsense	c.1876	p.R626*	0.365	pfam_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam,pfscan_GPCR_Rhodpsn_7TM	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LGR5	HGNC	ENSG00000139292				112	0	0	72	29	28.7129
TRHDE	0	genome.wustl.edu	37	12	72863586	72863586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	72863586	72863586	G	A	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	missense	c.1229	p.G410E	1.000	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				86	0	0	63	6	8.69565
CLSTN3	0	genome.wustl.edu	37	12	7295853	7295853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	7295853	7295853	C	T	SNP	CLSTN3	ENST00000266546	human	ensembl	74_37	+1	known	missense	c.1793	p.T598I	1.000	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182				198	1	0.502513	148	52	26
PPFIA2	0	genome.wustl.edu	37	12	81768483	81768483	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	81768483	81768483	G	A	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.1196	p.T399I	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220				66	0	0	52	19	26.7606
CCDC59	0	genome.wustl.edu	37	12	82752457	82752457	+	Splice_Site	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	82752457	82752457	C	T	SNP	CCDC59	ENST00000548126	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	CCDC59	HGNC	ENSG00000133773				131	0	0	102	29	22.1374
CCER1	0	genome.wustl.edu	37	12	91348379	91348379	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	91348379	91348379	C	T	SNP	CCER1	ENST00000358859	human	ensembl	74_37	-1	known	silent	c.141	p.A47	0.000	NULL	NULL	-	no_errors	CCER1	HGNC	ENSG00000197651				32	0	0	32	6	15.7895
PLXNC1	0	genome.wustl.edu	37	12	94648658	94648658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	94648658	94648658	C	T	SNP	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	missense	c.2977	p.R993C	0.986	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				18	0	0	12	4	25
NTN4	0	genome.wustl.edu	37	12	96181193	96181193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	96181193	96181193	G	A	SNP	NTN4	ENST00000343702	human	ensembl	74_37	-1	known	missense	c.109	p.R37W	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN4	HGNC	ENSG00000074527				91	0	0	70	26	27.0833
TMTC4	0	genome.wustl.edu	37	13	101266646	101266646	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	101266646	101266646	C	T	SNP	TMTC4	ENST00000342624	human	ensembl	74_37	-1	known	silent	c.1875	p.A625	0.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247				133	0	0	98	23	19.0083
TMTC4	0	genome.wustl.edu	37	13	101289878	101289878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	101289878	101289878	C	T	SNP	TMTC4	ENST00000342624	human	ensembl	74_37	-1	known	missense	c.913	p.V305M	0.002	NULL	pfam_TPR_1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247				147	1	0.675676	132	41	23.6994
TMTC4	0	genome.wustl.edu	37	13	101294559	101294559	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	101294559	101294559	T	C	SNP	TMTC4	ENST00000342624	human	ensembl	74_37	-1	known	missense	c.647	p.K216R	1.000	NULL	pfam_TPR_1,pfam_DUF1736,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC4	HGNC	ENSG00000125247				177	0	0	104	39	27.2727
IRS2	0	genome.wustl.edu	37	13	110434506	110434506	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	110434506	110434506	C	T	SNP	IRS2	ENST00000375856	human	ensembl	74_37	-1	known	missense	c.3895	p.V1299I	0.000	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS2	HGNC	ENSG00000185950				16	0	0	14	4	22.2222
COL4A1	0	genome.wustl.edu	37	13	110850974	110850974	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	110850974	110850974	G	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	silent	c.1125	p.L375	0.003	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				81	0	0	62	25	28.7356
COL4A2	0	genome.wustl.edu	37	13	111160656	111160656	+	RNA	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	111160656	111160656	A	T	SNP	COL4A2	ENST00000480609	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COL4A2	HGNC	ENSG00000134871				46	0	0	27	4	12.9032
ANKRD10	0	genome.wustl.edu	37	13	111545452	111545452	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	111545452	111545452	T	C	SNP	ANKRD10	ENST00000267339	human	ensembl	74_37	-1	known	missense	c.614	p.H205R	0.007	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD10	HGNC	ENSG00000088448				134	0	0	87	25	22.3214
TMEM255B	0	genome.wustl.edu	37	13	114514861	114514861	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	114514861	114514861	C	T	SNP	TMEM255B	ENST00000375353	human	ensembl	74_37	+1	known	silent	c.966	p.P322	0.993	NULL	NULL	-	no_errors	TMEM255B	HGNC	ENSG00000184497				167	0	0	131	34	20.6061
UPF3A	0	genome.wustl.edu	37	13	115047496	115047496	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	115047496	115047496	G	C	SNP	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	missense	c.208	p.V70L	1.000	pfam_Nonsense_mediated_decay_UPF3	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				11	0	0	7	2	22.2222
GJA3	0	genome.wustl.edu	37	13	20716880	20716880	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	20716880	20716880	C	T	SNP	GJA3	ENST00000241125	human	ensembl	74_37	-1	known	missense	c.548	p.R183H	0.999	pfam_Connexin_CCC,prints_Connexin,prints_Connexin46	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin46	-	no_errors	GJA3	HGNC	ENSG00000121743				106	0	0	93	29	23.7705
GJB6	0	genome.wustl.edu	37	13	20797122	20797122	+	Silent	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	20797122	20797122	C	G	SNP	GJB6	ENST00000241124	human	ensembl	74_37	-1	known	silent	c.498	p.V166	0.723	pfam_Connexin_CCC	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB6	HGNC	ENSG00000121742				71	0	0	50	9	15.2542
IFT88	0	genome.wustl.edu	37	13	21157114	21157114	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	21157114	21157114	G	T	SNP	IFT88	ENST00000319980	human	ensembl	74_37	+1	known	missense	c.136	p.A46S	1.000	NULL	pfam_TPR_1,pfam_TPR_2,pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFT88	HGNC	ENSG00000032742				98	0	0	43	14	24.5614
MIPEPP3	0	genome.wustl.edu	37	13	21875633	21875633	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	21875633	21875633	C	T	SNP	MIPEPP3	ENST00000424756	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.978	-	-	-	no_errors	MIPEPP3	HGNC	ENSG00000233325				37	0	0	27	10	27.027
AMER2	0	genome.wustl.edu	37	13	25745638	25745638	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	25745638	25745638	C	T	SNP	AMER2	ENST00000515384	human	ensembl	74_37	-1	known	silent	c.120	p.A40	0.865	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER2	HGNC	ENSG00000165566				28	0	0	27	3	10
FRY	0	genome.wustl.edu	37	13	32691585	32691585	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	32691585	32691585	C	A	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.439	p.P147T	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				72	0	0	71	7	8.97436
KL	0	genome.wustl.edu	37	13	33635847	33635847	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	33635847	33635847	C	T	SNP	KL	ENST00000380099	human	ensembl	74_37	+1	known	silent	c.2631	p.D877	0.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116				157	0	0	107	39	26.7123
MAB21L1	0	genome.wustl.edu	37	13	36049602	36049602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	36049602	36049602	G	A	SNP	MAB21L1	ENST00000379919	human	ensembl	74_37	-1	known	missense	c.674	p.A225V	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MAB21L1	HGNC	ENSG00000180660				155	0	0	91	42	31.5789
DCLK1	0	genome.wustl.edu	37	13	36385083	36385083	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	36385083	36385083	C	T	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.1577	p.S526N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				137	0	0	107	35	24.6479
SPG20	0	genome.wustl.edu	37	13	36878539	36878539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	36878539	36878539	G	A	SNP	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	missense	c.1964	p.T655M	0.000	NULL	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				168	0	0	105	44	29.5302
SMAD9	0	genome.wustl.edu	37	13	37453416	37453416	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	37453416	37453416	T	C	SNP	SMAD9	ENST00000379826	human	ensembl	74_37	-1	known	silent	c.411	p.P137	1.000	smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693				57	0	0	43	8	15.6863
STOML3	0	genome.wustl.edu	37	13	39541029	39541029	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	39541029	39541029	A	G	SNP	STOML3	ENST00000379631	human	ensembl	74_37	-1	known	missense	c.809	p.M270T	1.000	NULL	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	STOML3	HGNC	ENSG00000133115				104	0	0	79	33	29.4643
TSC22D1	0	genome.wustl.edu	37	13	45149330	45149330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	45149330	45149330	C	T	SNP	TSC22D1	ENST00000458659	human	ensembl	74_37	-1	known	missense	c.881	p.R294H	0.125	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804				110	0	0	102	18	15
CPB2	0	genome.wustl.edu	37	13	46638789	46638789	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	46638789	46638789	A	G	SNP	CPB2	ENST00000181383	human	ensembl	74_37	-1	known	missense	c.790	p.W264R	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB2	HGNC	ENSG00000080618				65	0	0	47	11	18.9655
KCNRG	0	genome.wustl.edu	37	13	50589904	50589904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	50589904	50589904	G	A	SNP	KCNRG	ENST00000312942	human	ensembl	74_37	+1	known	missense	c.275	p.R92H	0.507	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCNRG	HGNC	ENSG00000198553				160	0	0	92	25	21.3675
ATP7B	0	genome.wustl.edu	37	13	52509016	52509016	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	52509016	52509016	A	G	SNP	ATP7B	ENST00000242839	human	ensembl	74_37	-1	known	missense	c.4274	p.V1425A	0.814	NULL	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191				177	0	0	96	26	21.3115
CKAP2	0	genome.wustl.edu	37	13	53049197	53049197	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	53049197	53049197	T	C	SNP	CKAP2	ENST00000378037	human	ensembl	74_37	+1	known	missense	c.1973	p.L658S	1.000	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108				150	0	0	86	28	24.5614
MYCBP2	0	genome.wustl.edu	37	13	77763121	77763121	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	77763121	77763121	T	C	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.4216	p.I1406V	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				92	0	0	48	6	11.1111
MYCBP2	0	genome.wustl.edu	37	13	77779459	77779459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	77779459	77779459	C	T	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.3775	p.D1259N	1.000	pfam_PHR,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				70	0	0	35	18	33.9623
PTMAP5	0	genome.wustl.edu	37	13	82265002	82265002	+	RNA	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	82265002	82265002	T	C	SNP	PTMAP5	ENST00000607242	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTMAP5	HGNC	ENSG00000214182				60	0	0	63	7	10
GPC6	0	genome.wustl.edu	37	13	94482724	94482724	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	94482724	94482724	C	T	SNP	GPC6	ENST00000377047	human	ensembl	74_37	+1	known	missense	c.637	p.R213C	0.993	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098				66	0	0	54	15	21.7391
LINC00359	0	genome.wustl.edu	37	13	97600260	97600260	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	97600260	97600260	C	T	SNP	LINC00359	ENST00000442322	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	LINC00359	HGNC	ENSG00000243300				19	0	0	19	5	20.8333
DOCK9	0	genome.wustl.edu	37	13	99554621	99554621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	99554621	99554621	G	A	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	missense	c.1304	p.A435V	0.012	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				64	0	0	51	9	15
YY1	0	genome.wustl.edu	37	14	100728701	100728701	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	100728701	100728701	C	T	SNP	YY1	ENST00000262238	human	ensembl	74_37	+1	known	missense	c.740	p.S247L	1.000	pirsf_TF_Yin_yang	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY1	HGNC	ENSG00000100811				99	0	0	56	21	27.2727
DYNC1H1	0	genome.wustl.edu	37	14	102506738	102506738	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	102506738	102506738	G	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.11856	p.Q3952H	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				72	0	0	47	21	30.8824
MOK	0	genome.wustl.edu	37	14	102698915	102698915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	102698915	102698915	C	T	SNP	MOK	ENST00000361847	human	ensembl	74_37	-1	known	missense	c.823	p.A275T	0.288	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOK	HGNC	ENSG00000080823				169	0	0	137	9	6.16438
TECPR2	0	genome.wustl.edu	37	14	102901155	102901155	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	102901155	102901155	C	T	SNP	TECPR2	ENST00000359520	human	ensembl	74_37	+1	known	silent	c.2001	p.T667	0.000	NULL	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_RCC1/BLIP-II,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663				59	0	0	55	15	21.4286
CEP170B	0	genome.wustl.edu	37	14	105356064	105356064	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	105356064	105356064	G	A	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	missense	c.3955	p.V1319M	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814				87	0	0	60	21	25.9259
PACS2	0	genome.wustl.edu	37	14	105843116	105843116	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	105843116	105843116	G	A	SNP	PACS2	ENST00000458164	human	ensembl	74_37	+1	known	silent	c.813	p.S271	0.130	NULL	pfam_Phosphofurin_acidic_CS-1	-	no_errors	PACS2	HGNC	ENSG00000179364				55	0	0	51	13	20.3125
OR4K13	0	genome.wustl.edu	37	14	20502155	20502155	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	20502155	20502155	C	A	SNP	OR4K13	ENST00000315693	human	ensembl	74_37	-1	known	missense	c.763	p.V255F	0.015	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K13	HGNC	ENSG00000176253				66	0	0	41	9	18
OR4L1	0	genome.wustl.edu	37	14	20528376	20528376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	20528376	20528376	C	T	SNP	OR4L1	ENST00000315683	human	ensembl	74_37	+1	known	missense	c.173	p.P58L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4L1	HGNC	ENSG00000176246				185	0	0	123	32	20.6452
TEP1	0	genome.wustl.edu	37	14	20854232	20854232	+	Splice_Site	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	20854232	20854232	A	G	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	splice_site	c.2982+2	e19+2	1.000	-	-	-	no_errors	TEP1	HGNC	ENSG00000129566				241	0	0	177	56	24.0343
RNASE9	0	genome.wustl.edu	37	14	21025061	21025061	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	21025061	21025061	G	A	SNP	RNASE9	ENST00000338904	human	ensembl	74_37	-1	known	silent	c.168	p.P56	0.007	NULL	pfam_RNaseA_domain,superfamily_RNaseA_domain	-	no_errors	RNASE9	HGNC	ENSG00000188655				102	0	0	78	30	27.7778
SUPT16H	0	genome.wustl.edu	37	14	21831283	21831283	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	21831283	21831283	C	T	SNP	SUPT16H	ENST00000216297	human	ensembl	74_37	-1	known	missense	c.1421	p.R474Q	1.000	NULL	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201				109	0	0	59	21	26.25
MMP14	0	genome.wustl.edu	37	14	23313028	23313028	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	23313028	23313028	C	T	SNP	MMP14	ENST00000311852	human	ensembl	74_37	+1	known	silent	c.960	p.D320	0.571	pirsf_Pept_M10A_Metazoans,superfamily_Hemopexin-like_dom	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP14	HGNC	ENSG00000157227				190	0	0	131	40	23.3918
MYH6	0	genome.wustl.edu	37	14	23858108	23858108	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	23858108	23858108	T	C	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.4135	p.T1379A	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				143	0	0	102	37	26.6187
MYH7	0	genome.wustl.edu	37	14	23885003	23885003	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	23885003	23885003	G	A	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	silent	c.4992	p.N1664	0.975	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				106	0	0	70	16	18.6047
DHRS2	0	genome.wustl.edu	37	14	24113765	24113765	+	Splice_Site	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	24113765	24113765	T	G	SNP	DHRS2	ENST00000344777	human	ensembl	74_37	+1	known	splice_site	c.686+2	e6+2	0.000	-	-	-	no_errors	DHRS2	HGNC	ENSG00000100867				109	0	0	62	19	23.4568
IPO4	0	genome.wustl.edu	37	14	24656883	24656883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	24656883	24656883	G	A	SNP	IPO4	ENST00000354464	human	ensembl	74_37	-1	known	missense	c.398	p.P133L	0.007	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	IPO4	HGNC	ENSG00000196497				162	0	0	100	35	25.9259
NFATC4	0	genome.wustl.edu	37	14	24841792	24841792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	24841792	24841792	G	A	SNP	NFATC4	ENST00000413692	human	ensembl	74_37	+1	known	missense	c.1531	p.G511S	1.000	pfam_RHD,superfamily_p53-like_TF_DNA-bd,pfscan_RHD,prints_NFAT	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC4	HGNC	ENSG00000100968				56	0	0	52	22	29.7297
LOC100506071	0	genome.wustl.edu	37	14	31354865	31354865	+	RNA	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	31354865	31354865	T	C	SNP	LOC100506071	ENST00000555108	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-829H16.3	Clone_based_vega_gene	ENSG00000258525				49	0	0	30	8	21.0526
KIAA0391	0	genome.wustl.edu	37	14	35739687	35739687	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	35739687	35739687	G	A	SNP	KIAA0391	ENST00000534898	human	ensembl	74_37	+1	known	missense	c.1505	p.R502Q	1.000	NULL	NULL	-	no_errors	KIAA0391	HGNC	ENSG00000100890				132	0	0	94	25	21.0084
INSM2	0	genome.wustl.edu	37	14	36004595	36004595	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	36004595	36004595	G	A	SNP	INSM2	ENST00000307169	human	ensembl	74_37	+1	known	silent	c.1137	p.P379	0.673	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	INSM2	HGNC	ENSG00000168348				71	0	0	57	16	21.9178
NKX2-1	0	genome.wustl.edu	37	14	36987001	36987001	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	36987001	36987001	G	T	SNP	NKX2-1	ENST00000354822	human	ensembl	74_37	-1	known	missense	c.688	p.L230M	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-1	HGNC	ENSG00000136352				31	0	0	22	7	24.1379
LRFN5	0	genome.wustl.edu	37	14	42356100	42356100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	42356100	42356100	C	T	SNP	LRFN5	ENST00000298119	human	ensembl	74_37	+1	known	missense	c.272	p.T91I	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN5	HGNC	ENSG00000165379				64	0	0	35	18	33.9623
FAM179B	0	genome.wustl.edu	37	14	45537805	45537805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	45537805	45537805	C	T	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.4769	p.A1590V	0.997	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				70	0	0	61	14	18.6667
MIS18BP1	0	genome.wustl.edu	37	14	45711564	45711564	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	45711564	45711564	G	A	SNP	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	silent	c.816	p.S272	0.000	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				117	0	0	66	14	17.5
SOS2	0	genome.wustl.edu	37	14	50667726	50667726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	50667726	50667726	C	T	SNP	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	missense	c.290	p.R97Q	1.000	pfam_Histone_core_D,superfamily_Histone-fold	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				159	0	0	93	34	26.7717
TXNDC16	0	genome.wustl.edu	37	14	53003450	53003450	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	53003450	53003450	C	T	SNP	TXNDC16	ENST00000281741	human	ensembl	74_37	-1	known	missense	c.379	p.A127T	0.971	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301				35	0	0	22	6	21.4286
ATG14	0	genome.wustl.edu	37	14	55848903	55848903	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	55848903	55848903	G	A	SNP	ATG14	ENST00000247178	human	ensembl	74_37	-1	known	silent	c.654	p.P218	0.431	pfam_UV_resistance/autophagy_Atg14	pfam_UV_resistance/autophagy_Atg14	-	no_errors	ATG14	HGNC	ENSG00000126775				92	0	0	68	24	26.087
TBPL2	0	genome.wustl.edu	37	14	55903468	55903468	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	55903468	55903468	T	C	SNP	TBPL2	ENST00000247219	human	ensembl	74_37	-1	known	missense	c.419	p.Q140R	0.014	NULL	pfam_TBP,prints_TBP	-	no_errors	TBPL2	HGNC	ENSG00000182521				135	0	0	76	22	22.449
JKAMP	0	genome.wustl.edu	37	14	59954414	59954414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	59954414	59954414	C	T	SNP	JKAMP	ENST00000356057	human	ensembl	74_37	+1	known	missense	c.143	p.T48M	1.000	pfam_DUF766	pfam_DUF766	-	no_errors	JKAMP	HGNC	ENSG00000050130				162	0	0	115	8	6.50407
TMEM30B	0	genome.wustl.edu	37	14	61747063	61747063	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	61747063	61747063	C	T	SNP	TMEM30B	ENST00000355702	human	ensembl	74_37	-1	known	missense	c.803	p.R268H	1.000	pfam_DUF284_TM_euk,pirsf_DUF284_TM_euk	pfam_DUF284_TM_euk,pirsf_DUF284_TM_euk	-	no_errors	TMEM30B	HGNC	ENSG00000182107				81	0	0	44	25	36.2319
PLEKHG3	0	genome.wustl.edu	37	14	65197879	65197879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	65197879	65197879	C	T	SNP	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	missense	c.841	p.R281W	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822				71	0	0	51	18	26.087
SPTB	0	genome.wustl.edu	37	14	65237609	65237609	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	65237609	65237609	C	A	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	missense	c.5792	p.R1931M	0.995	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182				103	0	0	90	29	24.3697
MPP5	0	genome.wustl.edu	37	14	67759378	67759378	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	67759378	67759378	T	C	SNP	MPP5	ENST00000261681	human	ensembl	74_37	+1	known	missense	c.518	p.M173T	1.000	smart_L27,pfscan_L27	pfam_GK/Ca_channel_bsu,pfam_L27_N,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,pfam_L27_C,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP5	HGNC	ENSG00000072415				97	0	0	54	9	14.2857
ZFYVE26	0	genome.wustl.edu	37	14	68244276	68244276	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	68244276	68244276	C	A	SNP	ZFYVE26	ENST00000347230	human	ensembl	74_37	-1	known	missense	c.4974	p.K1658N	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121				106	0	0	66	34	34
ACTN1	0	genome.wustl.edu	37	14	69341673	69341673	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	69341673	69341673	A	G	SNP	ACTN1	ENST00000394419	human	ensembl	74_37	-1	known	missense	c.2648	p.I883T	1.000	pfam_EF-hand_Ca_insen	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN1	HGNC	ENSG00000072110				71	0	0	48	23	32.3944
ACTN1	0	genome.wustl.edu	37	14	69392358	69392358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	69392358	69392358	C	T	SNP	ACTN1	ENST00000394419	human	ensembl	74_37	-1	known	missense	c.137	p.R46Q	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN1	HGNC	ENSG00000072110				78	0	0	70	25	26.3158
ADAM21	0	genome.wustl.edu	37	14	70924556	70924556	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	70924556	70924556	T	C	SNP	ADAM21	ENST00000267499	human	ensembl	74_37	+1	known	missense	c.340	p.Y114H	0.756	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985				208	0	0	155	32	17.1123
PCNX	0	genome.wustl.edu	37	14	71445168	71445168	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	71445168	71445168	A	G	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.2114	p.N705S	0.068	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				155	0	0	80	35	30.4348
PCNX	0	genome.wustl.edu	37	14	71570248	71570248	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	71570248	71570248	A	G	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.5957	p.D1986G	1.000	pfam_Pecanex	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				118	0	0	93	8	7.92079
PAPLN	0	genome.wustl.edu	37	14	73718750	73718750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	73718750	73718750	G	A	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	missense	c.868	p.G290S	1.000	pfam_ADAM_spacer1	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				62	0	0	32	16	33.3333
ACOT2	0	genome.wustl.edu	37	14	74036200	74036200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	74036200	74036200	C	T	SNP	ACOT2	ENST00000238651	human	ensembl	74_37	+1	known	missense	c.256	p.R86C	0.899	pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT2	HGNC	ENSG00000119673				50	0	0	51	18	26.087
ALDH6A1	0	genome.wustl.edu	37	14	74538180	74538180	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	74538180	74538180	T	C	SNP	ALDH6A1	ENST00000553458	human	ensembl	74_37	-1	known	missense	c.448	p.S150G	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_MeMal-semiAld_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_MeMal-semiAld_DH	-	no_errors	ALDH6A1	HGNC	ENSG00000119711				100	0	0	58	28	32.5581
PROX2	0	genome.wustl.edu	37	14	75329594	75329594	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	75329594	75329594	G	T	SNP	PROX2	ENST00000445876	human	ensembl	74_37	-1	known	missense	c.944	p.P315H	0.003	NULL	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX2	HGNC	ENSG00000119608				146	0	0	105	32	23.3577
RPS6KL1	0	genome.wustl.edu	37	14	75388058	75388058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	75388058	75388058	G	A	SNP	RPS6KL1	ENST00000358328	human	ensembl	74_37	-1	known	missense	c.187	p.R63C	0.996	pfam_MIT,smart_MIT	pfam_Prot_kinase_dom,pfam_MIT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KL1	HGNC	ENSG00000198208				146	0	0	96	35	26.7176
ANGEL1	0	genome.wustl.edu	37	14	77269819	77269819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	77269819	77269819	G	A	SNP	ANGEL1	ENST00000251089	human	ensembl	74_37	-1	known	missense	c.1513	p.R505C	0.998	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL1	HGNC	ENSG00000013523				96	0	0	73	13	15.1163
IRF2BPL	0	genome.wustl.edu	37	14	77492633	77492633	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	77492633	77492633	G	A	SNP	IRF2BPL	ENST00000238647	human	ensembl	74_37	-1	known	silent	c.1503	p.D501	0.993	pfam_Interferon_reg_fac2-bd1_2_Znf	pfam_Interferon_reg_fac2-bd1_2_Znf	-	no_errors	IRF2BPL	HGNC	ENSG00000119669				10	0	0	6	5	45.4545
POMT2	0	genome.wustl.edu	37	14	77767578	77767578	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	77767578	77767578	G	A	SNP	POMT2	ENST00000261534	human	ensembl	74_37	-1	known	missense	c.671	p.P224L	0.993	pfam_Glyco_trans_39	pfam_Glyco_trans_39,pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT2	HGNC	ENSG00000009830				96	0	0	69	22	24.1758
SAMD15	0	genome.wustl.edu	37	14	77857510	77857510	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	77857510	77857510	G	T	SNP	SAMD15	ENST00000216471	human	ensembl	74_37	+1	known	missense	c.1948	p.A650S	0.003	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD15	HGNC	ENSG00000100583				67	0	0	39	19	32.7586
NOXRED1	0	genome.wustl.edu	37	14	77889208	77889208	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	77889208	77889208	A	G	SNP	NOXRED1	ENST00000380835	human	ensembl	74_37	-1	known	missense	c.25	p.S9P	0.526	NULL	NULL	-	no_errors	NOXRED1	HGNC	ENSG00000165555				221	0	0	152	43	22.0513
NRXN3	0	genome.wustl.edu	37	14	79175609	79175609	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	79175609	79175609	G	A	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	missense	c.1265	p.R422Q	0.991	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				117	0	0	67	20	22.9885
NRXN3	0	genome.wustl.edu	37	14	79433724	79433724	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	79433724	79433724	A	C	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	missense	c.2918	p.K973T	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				42	0	0	25	15	37.5
FLRT2	0	genome.wustl.edu	37	14	86088243	86088243	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	86088243	86088243	C	T	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.385	p.L129F	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				119	0	0	78	5	6.0241
FLRT2	0	genome.wustl.edu	37	14	86088495	86088495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	86088495	86088495	G	A	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.637	p.G213R	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				134	0	0	98	28	22.2222
TTC8	0	genome.wustl.edu	37	14	89319400	89319400	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	89319400	89319400	G	T	SNP	TTC8	ENST00000338104	human	ensembl	74_37	+1	known	missense	c.758	p.R253M	1.000	smart_TPR_repeat	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC8	HGNC	ENSG00000165533				40	0	0	28	13	31.7073
CCDC88C	0	genome.wustl.edu	37	14	91805636	91805636	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	91805636	91805636	G	T	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	silent	c.795	p.R265	0.659	pfam_Hook-related_fam,superfamily_Prefoldin	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				30	0	0	26	4	13.3333
CATSPERB	0	genome.wustl.edu	37	14	92140520	92140520	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	92140520	92140520	C	A	SNP	CATSPERB	ENST00000256343	human	ensembl	74_37	-1	known	missense	c.978	p.E326D	1.000	NULL	superfamily_Sialidases	-	no_errors	CATSPERB	HGNC	ENSG00000133962				39	0	0	38	7	15.5556
SLC24A4	0	genome.wustl.edu	37	14	92922911	92922911	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	92922911	92922911	A	T	SNP	SLC24A4	ENST00000532405	human	ensembl	74_37	+1	known	missense	c.1214	p.E405V	0.115	tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A4	HGNC	ENSG00000140090				60	0	0	56	18	24.3243
SYNE3	0	genome.wustl.edu	37	14	95899742	95899742	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	95899742	95899742	A	G	SNP	SYNE3	ENST00000334258	human	ensembl	74_37	-1	known	missense	c.2543	p.L848P	1.000	NULL	pfam_KASH,pfam_Spectrin_repeat,superfamily_Retrov_capsid_C,smart_Spectrin/alpha-actinin,pfscan_KASH	-	no_errors	SYNE3	HGNC	ENSG00000176438				118	0	0	70	30	30
BDKRB1	0	genome.wustl.edu	37	14	96730667	96730667	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	96730667	96730667	T	C	SNP	BDKRB1	ENST00000216629	human	ensembl	74_37	+1	known	silent	c.648	p.A216	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Brdyknn_1_rcpt,prints_GPCR_Rhodpsn,prints_Brdyknn_rcpt	-	no_errors	BDKRB1	HGNC	ENSG00000100739				120	0	0	85	23	21.2963
ASB7	0	genome.wustl.edu	37	15	101152540	101152540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	101152540	101152540	C	T	SNP	ASB7	ENST00000332783	human	ensembl	74_37	+1	known	missense	c.119	p.P40L	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB7	HGNC	ENSG00000183475				126	0	0	83	33	28.4483
CHEK2P2	0	genome.wustl.edu	37	15	20496710	20496710	+	RNA	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	20496710	20496710	A	C	SNP	CHEK2P2	ENST00000555186	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CHEK2P2	HGNC	ENSG00000259156				68	0	0	61	7	10.2941
HERC2P3	0	genome.wustl.edu	37	15	20644320	20644320	+	RNA	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	20644320	20644320	T	C	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				67	0	0	65	11	14.4737
NDN	0	genome.wustl.edu	37	15	23931878	23931878	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	23931878	23931878	T	C	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	missense	c.487	p.M163V	0.937	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636				56	0	0	43	22	33.8462
SNHG14	0	genome.wustl.edu	37	15	25438424	25438424	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	25438424	25438424	G	A	SNP	SNHG14	ENST00000414175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				200	0	0	149	59	28.3654
ATP10A	0	genome.wustl.edu	37	15	25940151	25940151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	25940151	25940151	C	T	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.2903	p.R968H	0.987	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				141	0	0	87	37	29.8387
HERC2	0	genome.wustl.edu	37	15	28361831	28361831	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	28361831	28361831	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.13589	p.S4530N	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				143	0	0	100	31	23.6641
CHRFAM7A	0	genome.wustl.edu	37	15	30654961	30654961	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	30654961	30654961	G	A	SNP	CHRFAM7A	ENST00000299847	human	ensembl	74_37	-1	known	silent	c.774	p.P258	0.202	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	-	no_errors	CHRFAM7A	HGNC	ENSG00000166664				22	0	0	13	4	23.5294
TRPM1	0	genome.wustl.edu	37	15	31323186	31323186	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	31323186	31323186	G	A	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.3178	p.L1060F	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				132	0	0	79	29	26.8519
TRPM1	0	genome.wustl.edu	37	15	31355374	31355374	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	31355374	31355374	G	A	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	silent	c.963	p.S321	0.134	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				83	0	0	65	17	20.7317
OTUD7A	0	genome.wustl.edu	37	15	31776544	31776544	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	31776544	31776544	C	T	SNP	OTUD7A	ENST00000382902	human	ensembl	74_37	-1	known	silent	c.1755	p.S585	0.847	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918				29	0	0	25	13	34.2105
OTUD7A	0	genome.wustl.edu	37	15	31822996	31822996	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	31822996	31822996	C	T	SNP	OTUD7A	ENST00000382902	human	ensembl	74_37	-1	known	nonsense	c.566	p.W189*	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918				72	0	0	53	20	27.3973
CHRNA7	0	genome.wustl.edu	37	15	32460210	32460210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	32460210	32460210	C	T	SNP	CHRNA7	ENST00000454250	human	ensembl	74_37	+1	known	missense	c.1147	p.R383C	0.999	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344				72	0	0	70	11	13.5802
FMN1	0	genome.wustl.edu	37	15	33192195	33192195	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	33192195	33192195	C	A	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	missense	c.2970	p.K990N	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				260	0	0	187	19	9.2233
RYR3	0	genome.wustl.edu	37	15	34072425	34072425	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	34072425	34072425	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.9151	p.L3051F	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				57	0	0	49	13	20.9677
SLC12A6	0	genome.wustl.edu	37	15	34532905	34532905	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	34532905	34532905	C	T	SNP	SLC12A6	ENST00000558589	human	ensembl	74_37	-1	known	missense	c.2366	p.G789E	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199				88	0	0	69	18	20.6897
SPRED1	0	genome.wustl.edu	37	15	38641697	38641697	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	38641697	38641697	A	C	SNP	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	missense	c.657	p.E219D	0.982	NULL	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				47	0	0	48	5	9.43396
SPRED1	0	genome.wustl.edu	37	15	38643475	38643475	+	Silent	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	38643475	38643475	T	G	SNP	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	silent	c.945	p.P315	0.893	NULL	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				92	0	0	46	18	28.125
C15orf53	0	genome.wustl.edu	37	15	38990598	38990598	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	38990598	38990598	G	A	SNP	C15orf53	ENST00000318792	human	ensembl	74_37	+1	known	missense	c.392	p.R131H	0.000	NULL	NULL	-	no_errors	C15orf53	HGNC	ENSG00000175779				71	0	0	53	11	17.1875
THBS1	0	genome.wustl.edu	37	15	39874832	39874832	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	39874832	39874832	T	C	SNP	THBS1	ENST00000260356	human	ensembl	74_37	+1	known	missense	c.506	p.I169T	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801				72	0	0	54	24	30.7692
DISP2	0	genome.wustl.edu	37	15	40656425	40656425	+	Splice_Site	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	40656425	40656425	A	G	SNP	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	splice_site	c.450-2	e3-2	0.972	-	-	-	no_errors	DISP2	HGNC	ENSG00000140323				163	0	0	141	34	19.4286
CASC5	0	genome.wustl.edu	37	15	40916700	40916700	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	40916700	40916700	T	C	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	missense	c.4316	p.M1439T	0.008	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				112	0	0	66	29	30.5263
VPS18	0	genome.wustl.edu	37	15	41191917	41191917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	41191917	41191917	C	T	SNP	VPS18	ENST00000220509	human	ensembl	74_37	+1	known	missense	c.901	p.R301C	1.000	pfam_Pep3_Vps18	pfam_Pep3_Vps18,pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold	-	no_errors	VPS18	HGNC	ENSG00000104142				133	0	0	89	36	28.8
NUSAP1	0	genome.wustl.edu	37	15	41650412	41650412	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	41650412	41650412	A	G	SNP	NUSAP1	ENST00000559596	human	ensembl	74_37	+1	known	missense	c.616	p.K206E	1.000	NULL	NULL	-	no_errors	NUSAP1	HGNC	ENSG00000137804				20	0	0	22	7	24.1379
MAPKBP1	0	genome.wustl.edu	37	15	42109622	42109622	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	42109622	42109622	C	T	SNP	MAPKBP1	ENST00000456763	human	ensembl	74_37	+1	known	missense	c.1766	p.A589V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MAPKBP1	HGNC	ENSG00000137802				92	0	0	72	30	29.4118
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42139713	42139713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	42139713	42139713	C	T	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	missense	c.2819	p.S940L	0.693	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				146	0	0	95	27	22.1311
ENSG00000257797	0	genome.wustl.edu	37	15	42302266	42302266	+	RNA	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	42302266	42302266	G	T	SNP	ENSG00000257797	ENST00000552704	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2382E5.2	Clone_based_vega_gene	ENSG00000257797				52	0	0	34	19	35.8491
GANC	0	genome.wustl.edu	37	15	42641671	42641671	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	42641671	42641671	T	G	SNP	GANC	ENST00000318010	human	ensembl	74_37	+1	known	missense	c.2509	p.C837G	0.134	NULL	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GANC	HGNC	ENSG00000214013				132	0	0	81	34	29.5652
TMEM62	0	genome.wustl.edu	37	15	43470863	43470863	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	43470863	43470863	C	A	SNP	TMEM62	ENST00000260403	human	ensembl	74_37	+1	known	missense	c.1440	p.N480K	0.650	NULL	superfamily_Cadherin-like	-	no_errors	TMEM62	HGNC	ENSG00000137842				26	0	0	18	3	14.2857
B2M	0	genome.wustl.edu	37	15	45007619	45007619	+	Splice_Site	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	45007619	45007619	A	G	SNP	B2M	ENST00000544417	human	ensembl	74_37	+1	known	splice_site	c.68-2	e2-2	0.989	-	-	-	no_errors	B2M	HGNC	ENSG00000166710				137	0	0	91	22	19.469
DUOX2	0	genome.wustl.edu	37	15	45398489	45398489	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	45398489	45398489	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.1982	p.P661L	0.394	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				76	0	0	47	17	26.5625
DUOX2	0	genome.wustl.edu	37	15	45399570	45399570	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	45399570	45399570	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	nonsense	c.1666	p.Q556*	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				168	0	0	112	49	30.4348
SEMA6D	0	genome.wustl.edu	37	15	48057167	48057167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	48057167	48057167	G	A	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	missense	c.1341	p.M447I	0.849	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				77	0	0	65	23	26.1364
FBN1	0	genome.wustl.edu	37	15	48936954	48936954	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	48936954	48936954	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.13	p.R5C	0.999	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				93	0	0	58	24	29.2683
SECISBP2L	0	genome.wustl.edu	37	15	49303986	49303986	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	49303986	49303986	T	C	SNP	SECISBP2L	ENST00000559471	human	ensembl	74_37	-1	known	silent	c.1806	p.P602	0.722	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2L	HGNC	ENSG00000138593				78	0	0	47	20	29.8507
MYO5C	0	genome.wustl.edu	37	15	52487639	52487639	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	52487639	52487639	T	C	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	missense	c.5011	p.N1671D	1.000	pfam_Dil_domain,pfscan_Dilute	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				39	0	0	32	3	8.57143
FAM63B	0	genome.wustl.edu	37	15	59144134	59144134	+	Silent	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	59144134	59144134	T	A	SNP	FAM63B	ENST00000559228	human	ensembl	74_37	+1	known	silent	c.1707	p.A569	0.000	NULL	pfam_DUF544	-	no_errors	FAM63B	HGNC	ENSG00000128923				115	1	0.862069	76	26	25.4902
SLTM	0	genome.wustl.edu	37	15	59186117	59186117	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	59186117	59186117	A	G	SNP	SLTM	ENST00000380516	human	ensembl	74_37	-1	known	silent	c.1551	p.D517	0.004	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776				67	0	0	36	16	30.7692
SNX1	0	genome.wustl.edu	37	15	64422122	64422122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	64422122	64422122	G	A	SNP	SNX1	ENST00000559844	human	ensembl	74_37	+1	known	missense	c.815	p.R272H	1.000	pfscan_Phox	pfam_Vps5_C,pfam_Sorting_nexin_N,pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX1	HGNC	ENSG00000028528				105	0	0	85	14	14.1414
PLEKHO2	0	genome.wustl.edu	37	15	65157594	65157594	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	65157594	65157594	A	T	SNP	PLEKHO2	ENST00000323544	human	ensembl	74_37	+1	known	missense	c.980	p.E327V	0.001	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHO2	HGNC	ENSG00000241839				110	0	0	100	7	6.54206
SPG21	0	genome.wustl.edu	37	15	65257735	65257735	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	65257735	65257735	G	T	SNP	SPG21	ENST00000204566	human	ensembl	74_37	-1	known	silent	c.736	p.R246	0.991	NULL	pfam_AB_hydrolase_1	-	no_errors	SPG21	HGNC	ENSG00000090487				95	0	0	68	4	5.55556
MEGF11	0	genome.wustl.edu	37	15	66191137	66191137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	66191137	66191137	G	A	SNP	MEGF11	ENST00000409699	human	ensembl	74_37	-1	known	missense	c.2903	p.P968L	1.000	NULL	pfam_EGF_laminin,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890				102	0	0	69	22	24.1758
NPTN	0	genome.wustl.edu	37	15	73866028	73866028	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	73866028	73866028	C	T	SNP	NPTN	ENST00000345330	human	ensembl	74_37	-1	known	missense	c.815	p.R272H	0.921	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_MFS_dom_general_subst_transpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NPTN	HGNC	ENSG00000156642				161	0	0	110	34	23.6111
STRA6	0	genome.wustl.edu	37	15	74487706	74487706	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	74487706	74487706	C	T	SNP	STRA6	ENST00000563965	human	ensembl	74_37	-1	known	silent	c.651	p.T217	0.107	NULL	NULL	-	no_errors	STRA6	HGNC	ENSG00000137868				46	0	0	31	23	42.5926
SEMA7A	0	genome.wustl.edu	37	15	74707019	74707019	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	74707019	74707019	G	A	SNP	SEMA7A	ENST00000261918	human	ensembl	74_37	-1	known	missense	c.1163	p.A388V	0.014	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA7A	HGNC	ENSG00000138623				170	0	0	110	56	33.7349
GOLGA6D	0	genome.wustl.edu	37	15	75581815	75581815	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	75581815	75581815	C	T	SNP	GOLGA6D	ENST00000434739	human	ensembl	74_37	+1	known	silent	c.642	p.H214	0.000	NULL	NULL	-	no_errors	GOLGA6D	HGNC	ENSG00000140478				25	0	0	19	11	36.6667
MAN2C1	0	genome.wustl.edu	37	15	75652923	75652923	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	75652923	75652923	A	G	SNP	MAN2C1	ENST00000267978	human	ensembl	74_37	-1	known	missense	c.1567	p.Y523H	1.000	pfam_Glyco_hydro_38_cen_dom,smart_Glyco_hydro_38_cen_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400				95	0	0	66	29	30.5263
PEAK1	0	genome.wustl.edu	37	15	77473379	77473379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	77473379	77473379	C	T	SNP	PEAK1	ENST00000312493	human	ensembl	74_37	-1	known	missense	c.890	p.R297Q	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	PEAK1	HGNC	ENSG00000173517				123	0	0	95	31	24.6032
LINGO1	0	genome.wustl.edu	37	15	77908005	77908005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	77908005	77908005	G	A	SNP	LINGO1	ENST00000355300	human	ensembl	74_37	-1	known	missense	c.244	p.R82C	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO1	HGNC	ENSG00000169783				23	0	0	26	6	18.75
ACSBG1	0	genome.wustl.edu	37	15	78526805	78526805	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	78526805	78526805	G	A	SNP	ACSBG1	ENST00000258873	human	ensembl	74_37	-1	known	silent	c.39	p.H13	0.012	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG1	HGNC	ENSG00000103740				324	0	0	242	90	27.1084
ADAMTS7	0	genome.wustl.edu	37	15	79092633	79092633	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	79092633	79092633	C	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	74_37	-1	known	silent	c.357	p.A119	0.233	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378				36	0	0	29	12	29.2683
CTSH	0	genome.wustl.edu	37	15	79229754	79229754	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	79229754	79229754	G	T	SNP	CTSH	ENST00000220166	human	ensembl	74_37	-1	known	silent	c.135	p.T45	0.125	pfam_Prot_inhib_I29,smart_Prot_inhib_I29	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSH	HGNC	ENSG00000103811				76	0	0	59	17	22.3684
ARNT2	0	genome.wustl.edu	37	15	80855535	80855535	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	80855535	80855535	A	G	SNP	ARNT2	ENST00000303329	human	ensembl	74_37	+1	known	missense	c.1271	p.Y424C	1.000	pfam_PAS_fold_3,superfamily_PAS,smart_PAC,tigrfam_PAS	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT2	HGNC	ENSG00000172379				254	0	0	192	68	26.1538
HOMER2	0	genome.wustl.edu	37	15	83520895	83520895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	83520895	83520895	G	A	SNP	HOMER2	ENST00000304231	human	ensembl	74_37	-1	known	missense	c.794	p.T265I	1.000	NULL	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	HOMER2	HGNC	ENSG00000103942				32	0	0	25	6	19.3548
HOMER2	0	genome.wustl.edu	37	15	83523493	83523493	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	83523493	83523493	C	T	SNP	HOMER2	ENST00000304231	human	ensembl	74_37	-1	known	missense	c.587	p.R196Q	1.000	NULL	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	HOMER2	HGNC	ENSG00000103942				60	0	0	58	23	28.3951
TM6SF1	0	genome.wustl.edu	37	15	83776454	83776454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	83776454	83776454	G	A	SNP	TM6SF1	ENST00000379386	human	ensembl	74_37	+1	known	missense	c.22	p.G8R	0.994	NULL	pfam_Transmembrane_6/97	-	no_errors	TM6SF1	HGNC	ENSG00000136404				23	0	0	15	6	28.5714
ZSCAN2	0	genome.wustl.edu	37	15	85149775	85149775	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	85149775	85149775	C	A	SNP	ZSCAN2	ENST00000334141	human	ensembl	74_37	+1	known	missense	c.422	p.A141D	0.000	smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN2	HGNC	ENSG00000176371				72	0	0	57	5	8.06452
DET1	0	genome.wustl.edu	37	15	89074194	89074194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	89074194	89074194	C	T	SNP	DET1	ENST00000444300	human	ensembl	74_37	-1	known	missense	c.776	p.G259D	1.000	pfam_De-etiolated_protein_1_Det1	pfam_De-etiolated_protein_1_Det1	-	no_errors	DET1	HGNC	ENSG00000140543				70	0	0	46	11	19.2982
ACAN	0	genome.wustl.edu	37	15	89401038	89401038	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	89401038	89401038	G	T	SNP	ACAN	ENST00000439576	human	ensembl	74_37	+1	known	missense	c.5222	p.G1741V	0.936	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766				200	0	0	131	34	20.6061
POLG	0	genome.wustl.edu	37	15	89876827	89876827	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	89876827	89876827	T	A	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	missense	c.159	p.Q53H	0.004	pirsf_DNA-dir_DNA_pol_A_mt_sub	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				32	0	0	26	12	31.5789
POLG	0	genome.wustl.edu	37	15	89876828	89876828	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	89876828	89876828	T	G	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	missense	c.158	p.Q53P	0.005	pirsf_DNA-dir_DNA_pol_A_mt_sub	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				31	0	0	26	12	31.5789
POLG	0	genome.wustl.edu	37	15	89876836	89876836	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	89876836	89876836	C	T	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	silent	c.150	p.Q50	0.002	pirsf_DNA-dir_DNA_pol_A_mt_sub	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				25	0	0	23	10	30.303
IQGAP1	0	genome.wustl.edu	37	15	91017330	91017330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	91017330	91017330	G	A	SNP	IQGAP1	ENST00000268182	human	ensembl	74_37	+1	known	missense	c.2540	p.R847Q	1.000	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_WW_dom,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575				52	0	0	35	10	22.2222
ST8SIA2	0	genome.wustl.edu	37	15	93007591	93007591	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	93007591	93007591	C	T	SNP	ST8SIA2	ENST00000268164	human	ensembl	74_37	+1	known	silent	c.1104	p.V368	0.014	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA2	HGNC	ENSG00000140557				137	0	0	129	33	20.3704
CIITA	0	genome.wustl.edu	37	16	11000684	11000684	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	11000684	11000684	C	T	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	silent	c.1335	p.Y445	0.985	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				128	0	0	111	45	28.8462
RHBDF1	0	genome.wustl.edu	37	16	111619	111619	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	111619	111619	C	T	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	silent	c.1284	p.A428	0.953	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384				98	0	0	68	24	26.087
SSTR5	0	genome.wustl.edu	37	16	1129911	1129911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	1129911	1129911	C	T	SNP	SSTR5	ENST00000293897	human	ensembl	74_37	+1	known	missense	c.1043	p.P348L	0.001	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt_5,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	-	no_errors	SSTR5	HGNC	ENSG00000162009				31	0	0	19	10	34.4828
RHBDF1	0	genome.wustl.edu	37	16	113084	113084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	113084	113084	C	T	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	missense	c.559	p.A187T	0.729	pfam_Rhomboid_SP	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384				17	0	0	14	9	39.1304
LITAF	0	genome.wustl.edu	37	16	11643465	11643465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	11643465	11643465	C	T	SNP	LITAF	ENST00000381810	human	ensembl	74_37	-1	known	missense	c.515	p.G172D	0.002	NULL	pfam_LITAF,smart_LITAF	-	no_errors	LITAF	HGNC	ENSG00000189067				32	0	0	14	6	30
TXNDC11	0	genome.wustl.edu	37	16	11785753	11785753	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	11785753	11785753	C	T	SNP	TXNDC11	ENST00000356957	human	ensembl	74_37	-1	known	silent	c.1374	p.Q458	0.999	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066				84	0	0	62	31	33.3333
SNX29	0	genome.wustl.edu	37	16	12136881	12136881	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	12136881	12136881	A	T	SNP	SNX29	ENST00000566228	human	ensembl	74_37	+1	putative	missense	c.375	p.E125D	0.540	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_Phox,superfamily_Phox,smart_Run,smart_Phox,pfscan_Phox,pfscan_Run	-	no_errors	SNX29	HGNC	ENSG00000048471				60	0	0	42	14	25
SNX29	0	genome.wustl.edu	37	16	12223537	12223537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	12223537	12223537	G	A	SNP	SNX29	ENST00000306030	human	ensembl	74_37	+1	known	missense	c.362	p.R121Q	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471				32	0	0	18	8	30.7692
MYH11	0	genome.wustl.edu	37	16	15818575	15818575	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	15818575	15818575	G	A	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	nonsense	c.4066	p.Q1356*	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				233	0	0	169	57	25.2212
ABCC6	0	genome.wustl.edu	37	16	16259624	16259624	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	16259624	16259624	C	T	SNP	ABCC6	ENST00000205557	human	ensembl	74_37	-1	known	silent	c.3162	p.T1054	0.982	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262				136	0	0	115	12	9.44882
NPRL3	0	genome.wustl.edu	37	16	167353	167353	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	167353	167353	G	T	SNP	NPRL3	ENST00000399953	human	ensembl	74_37	-1	known	missense	c.340	p.P114T	1.000	pfam_NPR3,superfamily_Galactose-bd-like	pfam_NPR3,superfamily_Galactose-bd-like	-	no_errors	NPRL3	HGNC	ENSG00000103148				22	0	0	17	9	34.6154
HAGH	0	genome.wustl.edu	37	16	1866933	1866933	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	1866933	1866933	G	A	SNP	HAGH	ENST00000455446	human	ensembl	74_37	-1	putative	missense	c.599	p.P200L	0.005	NULL	pfam_Beta-lactamas-like	-	no_errors	HAGH	HGNC	ENSG00000063854				65	0	0	46	13	22.0339
SMG1	0	genome.wustl.edu	37	16	18937330	18937330	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	18937330	18937330	T	C	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	missense	c.34	p.S12G	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				13	0	0	18	3	14.2857
GP2	0	genome.wustl.edu	37	16	20335392	20335392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	20335392	20335392	C	T	SNP	GP2	ENST00000381362	human	ensembl	74_37	-1	known	missense	c.281	p.R94H	1.000	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	GP2	HGNC	ENSG00000169347				111	0	0	88	32	26.6667
ACSM2A	0	genome.wustl.edu	37	16	20481029	20481029	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	20481029	20481029	A	C	SNP	ACSM2A	ENST00000219054	human	ensembl	74_37	+1	known	missense	c.584	p.K195T	0.017	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747				272	0	0	194	11	5.36585
MLST8	0	genome.wustl.edu	37	16	2258623	2258623	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	2258623	2258623	C	T	SNP	MLST8	ENST00000301724	human	ensembl	74_37	+1	putative	missense	c.871	p.R291C	0.000	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MLST8	HGNC	ENSG00000167965				113	0	0	93	38	29.0076
USP31	0	genome.wustl.edu	37	16	23091266	23091266	+	Splice_Site	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	23091266	23091266	C	T	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	splice_site	c.2176+1	e13+1	1.000	-	-	-	no_errors	USP31	HGNC	ENSG00000103404				58	0	0	40	27	40.2985
TNRC6A	0	genome.wustl.edu	37	16	24828182	24828182	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	24828182	24828182	C	A	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.4877	p.P1626H	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				163	0	0	82	29	26.1261
ARHGAP17	0	genome.wustl.edu	37	16	24942149	24942149	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	24942149	24942149	C	T	SNP	ARHGAP17	ENST00000289968	human	ensembl	74_37	-1	known	missense	c.2471	p.S824N	0.008	NULL	pfam_BAR_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP17	HGNC	ENSG00000140750				319	0	0	210	77	26.8293
KIAA0556	0	genome.wustl.edu	37	16	27710866	27710866	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	27710866	27710866	A	G	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	silent	c.1125	p.G375	0.582	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				58	0	0	41	16	28.0702
KIAA0556	0	genome.wustl.edu	37	16	27777751	27777751	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	27777751	27777751	C	T	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	missense	c.3931	p.R1311C	1.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				97	0	0	55	21	27.6316
ATP2A1	0	genome.wustl.edu	37	16	28898955	28898955	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	28898955	28898955	C	T	SNP	ATP2A1	ENST00000357084	human	ensembl	74_37	+1	known	silent	c.840	p.N280	0.969	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A1	HGNC	ENSG00000196296				192	0	0	159	38	19.2893
LAT	0	genome.wustl.edu	37	16	28996808	28996808	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	28996808	28996808	G	A	SNP	LAT	ENST00000395461	human	ensembl	74_37	+1	known	missense	c.178	p.A60T	0.008	NULL	prints_Linker_for_activat_Tcells_prot	-	no_errors	LAT	HGNC	ENSG00000213658				68	0	0	44	24	35.2941
SPN	0	genome.wustl.edu	37	16	29675057	29675057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	29675057	29675057	C	T	SNP	SPN	ENST00000360121	human	ensembl	74_37	+1	known	missense	c.8	p.T3M	0.069	NULL	NULL	-	no_errors	SPN	HGNC	ENSG00000197471				343	0	0	228	76	25
MAZ	0	genome.wustl.edu	37	16	29818097	29818097	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	29818097	29818097	C	T	SNP	MAZ	ENST00000219782	human	ensembl	74_37	+1	known	silent	c.75	p.G25	0.963	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MAZ	HGNC	ENSG00000103495				43	0	0	28	16	36.3636
ZNF785	0	genome.wustl.edu	37	16	30594461	30594461	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	30594461	30594461	C	A	SNP	ZNF785	ENST00000395216	human	ensembl	74_37	-1	known	missense	c.638	p.R213M	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF785	HGNC	ENSG00000197162				78	0	0	55	23	29.4872
STX1B	0	genome.wustl.edu	37	16	31004789	31004789	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	31004789	31004789	T	C	SNP	STX1B	ENST00000215095	human	ensembl	74_37	-1	known	missense	c.554	p.Q185R	1.000	superfamily_t-SNARE	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX1B	HGNC	ENSG00000099365				88	0	0	94	19	16.8142
PRSS53	0	genome.wustl.edu	37	16	31097788	31097788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	31097788	31097788	C	T	SNP	PRSS53	ENST00000280606	human	ensembl	74_37	-1	known	missense	c.533	p.R178H	0.992	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS53	HGNC	ENSG00000151006				49	0	0	57	12	17.3913
TRIM72	0	genome.wustl.edu	37	16	31235606	31235606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	31235606	31235606	G	A	SNP	TRIM72	ENST00000322122	human	ensembl	74_37	+1	known	missense	c.964	p.G322R	0.454	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM72	HGNC	ENSG00000177238				20	0	0	17	6	26.087
ZSCAN10	0	genome.wustl.edu	37	16	3139545	3139545	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	3139545	3139545	G	A	SNP	ZSCAN10	ENST00000252463	human	ensembl	74_37	-1	known	silent	c.1725	p.G575	0.069	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN10	HGNC	ENSG00000130182				19	0	0	20	4	16.6667
OR1F1	0	genome.wustl.edu	37	16	3254621	3254621	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	3254621	3254621	C	T	SNP	OR1F1	ENST00000304646	human	ensembl	74_37	+1	known	silent	c.375	p.A125	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1F1	HGNC	ENSG00000168124				215	1	0.462963	164	48	22.6415
VASN	0	genome.wustl.edu	37	16	4431967	4431967	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	4431967	4431967	C	T	SNP	VASN	ENST00000304735	human	ensembl	74_37	+1	known	silent	c.1089	p.P363	0.001	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	VASN	HGNC	ENSG00000168140				33	0	0	29	8	21.6216
DECR2	0	genome.wustl.edu	37	16	457533	457533	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	457533	457533	T	C	SNP	DECR2	ENST00000219481	human	ensembl	74_37	+1	known	missense	c.310	p.F104L	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,smart_PKS/FAS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DECR2	HGNC	ENSG00000242612				99	0	0	63	30	32.2581
C16orf71	0	genome.wustl.edu	37	16	4790616	4790616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	4790616	4790616	C	T	SNP	C16orf71	ENST00000299320	human	ensembl	74_37	+1	known	missense	c.739	p.P247S	0.000	NULL	NULL	-	no_errors	C16orf71	HGNC	ENSG00000166246				83	0	0	81	16	16.4948
ABCC11	0	genome.wustl.edu	37	16	48256660	48256660	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	48256660	48256660	A	G	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.626	p.L209P	0.651	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				95	0	0	65	6	8.4507
PPL	0	genome.wustl.edu	37	16	4944524	4944524	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	4944524	4944524	C	T	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	silent	c.1338	p.P446	0.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				90	0	0	67	27	28.7234
CYLD	0	genome.wustl.edu	37	16	50785686	50785686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	50785686	50785686	G	A	SNP	CYLD	ENST00000311559	human	ensembl	74_37	+1	known	missense	c.676	p.E226K	1.000	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Peptidase_C19/C67,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19/C67	-	no_errors	CYLD	HGNC	ENSG00000083799				66	0	0	60	13	17.8082
IRX6	0	genome.wustl.edu	37	16	55359040	55359040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	55359040	55359040	G	A	SNP	IRX6	ENST00000290552	human	ensembl	74_37	+1	known	missense	c.37	p.A13T	0.990	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX6	HGNC	ENSG00000159387				38	0	0	25	19	43.1818
OGFOD1	0	genome.wustl.edu	37	16	56501132	56501132	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	56501132	56501132	A	G	SNP	OGFOD1	ENST00000566157	human	ensembl	74_37	+1	known	missense	c.713	p.H238R	1.000	smart_Pro_4_hyd_alph	pfam_Oxoglutarate/Fe-dep_Oase_C,smart_Pro_4_hyd_alph	-	no_errors	OGFOD1	HGNC	ENSG00000087263				214	0	0	122	46	27.381
CETP	0	genome.wustl.edu	37	16	56996925	56996925	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	56996925	56996925	A	G	SNP	CETP	ENST00000200676	human	ensembl	74_37	+1	known	missense	c.122	p.N41S	0.923	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,pirsf_Cholesteryl_ester_transfer	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C,pirsf_Cholesteryl_ester_transfer	-	no_errors	CETP	HGNC	ENSG00000087237				70	0	0	45	20	30.7692
NLRC5	0	genome.wustl.edu	37	16	57054733	57054733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	57054733	57054733	C	T	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	missense	c.109	p.P37S	0.995	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				80	0	0	74	19	20.4301
SETD6	0	genome.wustl.edu	37	16	58550381	58550381	+	Splice_Site	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	58550381	58550381	G	A	SNP	SETD6	ENST00000219315	human	ensembl	74_37	+1	known	splice_site	c.477-1	e4-1	1.000	-	-	-	no_errors	SETD6	HGNC	ENSG00000103037				164	0	0	129	44	25.4335
CNOT1	0	genome.wustl.edu	37	16	58566207	58566207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	58566207	58566207	C	T	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.5988	p.M1996I	1.000	pfam_CCR4-Not_Not1_C	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				60	0	0	41	14	25.4545
CDH8	0	genome.wustl.edu	37	16	61891117	61891117	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	61891117	61891117	C	T	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	silent	c.573	p.A191	0.595	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				72	0	0	53	14	20.8955
PIGQ	0	genome.wustl.edu	37	16	632290	632290	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	632290	632290	C	A	SNP	PIGQ	ENST00000321878	human	ensembl	74_37	+1	known	missense	c.1574	p.P525H	1.000	NULL	pfam_GlcNAc_Gpi1	-	no_errors	PIGQ	HGNC	ENSG00000007541				37	0	0	24	7	22.5806
CES3	0	genome.wustl.edu	37	16	67006313	67006313	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	67006313	67006313	C	T	SNP	CES3	ENST00000570236	human	ensembl	74_37	+1	known	nonsense	c.1117	p.R373*	0.000	NULL	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES3	HGNC	ENSG00000172828				358	0	0	260	96	26.9663
FBXL8	0	genome.wustl.edu	37	16	67197272	67197272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	67197272	67197272	G	A	SNP	FBXL8	ENST00000258200	human	ensembl	74_37	+1	known	missense	c.674	p.R225Q	0.641	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL8	HGNC	ENSG00000135722				8	0	0	13	6	31.5789
SLC9A5	0	genome.wustl.edu	37	16	67298313	67298313	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	67298313	67298313	A	C	SNP	SLC9A5	ENST00000299798	human	ensembl	74_37	+1	known	missense	c.1901	p.K634T	1.000	prints_Na/H_exchanger_3/5	pfam_Cation/H_exchanger,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A5	HGNC	ENSG00000135740				80	0	0	63	7	10
LRRC36	0	genome.wustl.edu	37	16	67418856	67418856	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	67418856	67418856	C	A	SNP	LRRC36	ENST00000329956	human	ensembl	74_37	+1	known	missense	c.2129	p.P710H	1.000	NULL	NULL	-	no_errors	LRRC36	HGNC	ENSG00000159708				93	0	0	64	16	20
CTRL	0	genome.wustl.edu	37	16	67965049	67965049	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	67965049	67965049	G	A	SNP	CTRL	ENST00000574481	human	ensembl	74_37	-1	known	silent	c.108	p.N36	0.370	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CTRL	HGNC	ENSG00000141086				88	0	0	72	26	26.5306
SMPD3	0	genome.wustl.edu	37	16	68405291	68405291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	68405291	68405291	C	T	SNP	SMPD3	ENST00000219334	human	ensembl	74_37	-1	known	missense	c.794	p.G265D	0.042	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056				46	0	0	35	15	30
ZFP90	0	genome.wustl.edu	37	16	68597621	68597621	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	68597621	68597621	C	T	SNP	ZFP90	ENST00000398253	human	ensembl	74_37	+1	known	nonsense	c.931	p.Q311*	0.231	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP90	HGNC	ENSG00000184939				82	0	0	54	18	25
PDPR	0	genome.wustl.edu	37	16	70172860	70172860	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	70172860	70172860	C	T	SNP	PDPR	ENST00000288050	human	ensembl	74_37	+1	known	silent	c.1249	p.L417	0.977	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857				73	0	0	52	8	13.3333
DDX19A	0	genome.wustl.edu	37	16	70400065	70400065	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	70400065	70400065	A	G	SNP	DDX19A	ENST00000302243	human	ensembl	74_37	+1	known	missense	c.682	p.K228E	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX19A	HGNC	ENSG00000168872				133	0	0	91	17	15.7407
MTSS1L	0	genome.wustl.edu	37	16	70698348	70698348	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	70698348	70698348	G	A	SNP	MTSS1L	ENST00000338779	human	ensembl	74_37	-1	known	silent	c.1476	p.S492	0.028	NULL	pfam_IRSp53/MIM_homology_IMD	-	no_errors	MTSS1L	HGNC	ENSG00000132613				18	0	0	16	5	23.8095
CHST4	0	genome.wustl.edu	37	16	71571012	71571012	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	71571012	71571012	T	C	SNP	CHST4	ENST00000338482	human	ensembl	74_37	+1	known	silent	c.432	p.D144	0.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST4	HGNC	ENSG00000140835				118	0	0	64	28	30.4348
PHLPP2	0	genome.wustl.edu	37	16	71748554	71748554	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	71748554	71748554	T	C	SNP	PHLPP2	ENST00000356272	human	ensembl	74_37	-1	known	missense	c.145	p.T49A	0.136	NULL	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom	-	no_errors	PHLPP2	HGNC	ENSG00000040199				43	0	0	32	10	23.8095
STUB1	0	genome.wustl.edu	37	16	731318	731318	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	731318	731318	G	A	SNP	STUB1	ENST00000219548	human	ensembl	74_37	+1	known	missense	c.326	p.S109N	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_Ubox_domain,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ubox_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STUB1	HGNC	ENSG00000103266				60	0	0	30	14	31.8182
WDR24	0	genome.wustl.edu	37	16	739373	739373	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	739373	739373	G	A	SNP	WDR24	ENST00000248142	human	ensembl	74_37	-1	known	silent	c.454	p.L152	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR24	HGNC	ENSG00000127580				51	0	0	54	10	15.625
WDR59	0	genome.wustl.edu	37	16	74985388	74985388	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	74985388	74985388	G	A	SNP	WDR59	ENST00000262144	human	ensembl	74_37	-1	known	silent	c.294	p.G98	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_UBQ-conjugating_enzyme/RWD,smart_WD40_repeat,smart_RWD-domain,pfscan_RWD-domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR59	HGNC	ENSG00000103091				8	0	0	8	3	27.2727
MON1B	0	genome.wustl.edu	37	16	77228987	77228987	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	77228987	77228987	C	T	SNP	MON1B	ENST00000248248	human	ensembl	74_37	+1	known	missense	c.1231	p.R411W	1.000	pfam_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1B	HGNC	ENSG00000103111				21	0	0	16	5	23.8095
ADAMTS18	0	genome.wustl.edu	37	16	77393314	77393314	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	77393314	77393314	G	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.1223	p.A408V	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				53	0	0	45	5	10
CLEC3A	0	genome.wustl.edu	37	16	78064352	78064352	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	78064352	78064352	C	T	SNP	CLEC3A	ENST00000299642	human	ensembl	74_37	+1	known	nonsense	c.235	p.R79*	1.000	superfamily_C-type_lectin_fold,smart_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC3A	HGNC	ENSG00000166509				213	0	0	157	20	11.2994
PLCG2	0	genome.wustl.edu	37	16	81957092	81957092	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	81957092	81957092	T	C	SNP	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	silent	c.2310	p.P770	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SH3_domain,pirsf_PLC-gamma,pfscan_SH3_domain	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				33	0	0	16	11	40.7407
OSGIN1	0	genome.wustl.edu	37	16	83994314	83994314	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	83994314	83994314	C	T	SNP	OSGIN1	ENST00000361711	human	ensembl	74_37	+1	known	silent	c.345	p.H115	0.760	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	OSGIN1	HGNC	ENSG00000140961				57	0	0	48	6	11.1111
CHTF18	0	genome.wustl.edu	37	16	847077	847077	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	847077	847077	G	A	SNP	CHTF18	ENST00000317063	human	ensembl	74_37	+1	known	silent	c.3345	p.A1115	0.000	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586				105	0	0	62	26	29.5455
ZCCHC14	0	genome.wustl.edu	37	16	87446393	87446393	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	87446393	87446393	C	T	SNP	ZCCHC14	ENST00000268616	human	ensembl	74_37	-1	known	missense	c.1523	p.R508H	0.965	NULL	pfam_SAM_type1,pfam_Znf_CCHC,superfamily_Phox,superfamily_SAM/pointed,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC14	HGNC	ENSG00000140948				96	0	0	63	33	34.375
SLC7A5	0	genome.wustl.edu	37	16	87870112	87870112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	87870112	87870112	G	A	SNP	SLC7A5	ENST00000261622	human	ensembl	74_37	-1	known	missense	c.1282	p.P428S	1.000	pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A5	HGNC	ENSG00000103257				40	0	0	27	12	30.7692
ZC3H18	0	genome.wustl.edu	37	16	88697651	88697651	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	88697651	88697651	A	G	SNP	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	missense	c.2806	p.K936E	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				47	0	0	32	12	27.2727
CTU2	0	genome.wustl.edu	37	16	88780094	88780094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	88780094	88780094	C	T	SNP	CTU2	ENST00000567949	human	ensembl	74_37	+1	known	missense	c.1126	p.R376W	0.997	pfam_Thiouridylase_cyt_su2	pfam_Thiouridylase_cyt_su2	-	no_errors	CTU2	HGNC	ENSG00000174177				147	0	0	113	43	27.5641
CDH15	0	genome.wustl.edu	37	16	89258292	89258292	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	89258292	89258292	C	T	SNP	CDH15	ENST00000289746	human	ensembl	74_37	+1	known	silent	c.1605	p.S535	0.991	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910				9	0	0	14	4	22.2222
CPNE7	0	genome.wustl.edu	37	16	89645292	89645292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	89645292	89645292	G	A	SNP	CPNE7	ENST00000268720	human	ensembl	74_37	+1	known	missense	c.385	p.V129M	0.001	superfamily_C2_dom,smart_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE7	HGNC	ENSG00000178773				73	0	0	40	15	27.2727
CHMP1A	0	genome.wustl.edu	37	16	89713100	89713100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	89713100	89713100	G	A	SNP	CHMP1A	ENST00000397901	human	ensembl	74_37	-1	known	missense	c.404	p.S135L	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP1A	HGNC	ENSG00000131165				24	0	0	20	4	16.6667
DEF8	0	genome.wustl.edu	37	16	90028534	90028534	+	Splice_Site	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	90028534	90028534	G	A	SNP	DEF8	ENST00000268676	human	ensembl	74_37	+1	known	splice_site	c.1104+1	e8+1	1.000	-	-	-	no_errors	DEF8	HGNC	ENSG00000140995				22	0	0	26	5	16.129
GAS8	0	genome.wustl.edu	37	16	90097848	90097848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	90097848	90097848	C	T	SNP	GAS8	ENST00000268699	human	ensembl	74_37	+1	known	missense	c.232	p.R78W	1.000	NULL	NULL	-	no_errors	GAS8	HGNC	ENSG00000141013				15	0	0	11	8	42.1053
MYH1	0	genome.wustl.edu	37	17	10404029	10404029	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	10404029	10404029	A	C	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.3779	p.L1260R	0.972	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				109	0	0	77	28	26.6667
MYOCD	0	genome.wustl.edu	37	17	12647672	12647672	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	12647672	12647672	T	G	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	missense	c.890	p.L297R	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				75	0	0	59	9	13.2353
COX10	0	genome.wustl.edu	37	17	13977692	13977692	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	13977692	13977692	C	A	SNP	COX10	ENST00000261643	human	ensembl	74_37	+1	known	silent	c.96	p.S32	0.105	pirsf_Protohaem_IX_farnesylTrfase_mt	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695				162	0	0	76	29	27.619
SLC43A2	0	genome.wustl.edu	37	17	1489330	1489330	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	1489330	1489330	G	T	SNP	SLC43A2	ENST00000382147	human	ensembl	74_37	-1	known	missense	c.1106	p.S369Y	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A2	HGNC	ENSG00000167703				23	0	0	16	2	11.1111
TEKT3	0	genome.wustl.edu	37	17	15207323	15207323	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	15207323	15207323	A	G	SNP	TEKT3	ENST00000338696	human	ensembl	74_37	-1	known	missense	c.1403	p.I468T	1.000	pfam_Tektin,prints_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT3	HGNC	ENSG00000125409				101	0	0	79	25	24.0385
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				62	0	0	56	10	15.1515
CDRT1	0	genome.wustl.edu	37	17	15522766	15522766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	15522766	15522766	C	T	SNP	CDRT1	ENST00000395906	human	ensembl	74_37	-1	known	missense	c.61	p.D21N	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	CDRT1	HGNC	ENSG00000241322				384	1	0.25974	287	34	10.5919
TBC1D26	0	genome.wustl.edu	37	17	15644464	15644464	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	15644464	15644464	G	A	SNP	TBC1D26	ENST00000437605	human	ensembl	74_37	+1	known	missense	c.575	p.R192H	0.569	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D26	HGNC	ENSG00000214946				94	0	0	96	7	6.79612
NCOR1	0	genome.wustl.edu	37	17	15973538	15973538	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	15973538	15973538	G	T	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.4454	p.P1485H	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				298	0	0	207	58	21.8868
WDR81	0	genome.wustl.edu	37	17	1631762	1631762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	1631762	1631762	G	A	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.3509	p.G1170E	1.000	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				30	0	0	28	8	22.2222
TRPV2	0	genome.wustl.edu	37	17	16327046	16327046	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	16327046	16327046	C	A	SNP	TRPV2	ENST00000338560	human	ensembl	74_37	+1	known	missense	c.889	p.P297T	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688				96	0	0	74	18	19.5652
SMYD4	0	genome.wustl.edu	37	17	1684630	1684630	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	1684630	1684630	T	C	SNP	SMYD4	ENST00000305513	human	ensembl	74_37	-1	known	missense	c.2365	p.K789E	1.000	NULL	pfam_SET_dom,pfam_Znf_MYND,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD4	HGNC	ENSG00000186532				104	0	0	78	8	9.30233
SMYD4	0	genome.wustl.edu	37	17	1684734	1684734	+	Splice_Site	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	1684734	1684734	C	A	SNP	SMYD4	ENST00000305513	human	ensembl	74_37	-1	known	splice_site	c.2262-1	e10-1	1.000	-	-	-	no_errors	SMYD4	HGNC	ENSG00000186532				48	0	0	38	16	29.6296
MPRIP	0	genome.wustl.edu	37	17	17075078	17075078	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	17075078	17075078	A	C	SNP	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	missense	c.2210	p.K737T	1.000	superfamily_Ferritin-like_SF	pfam_Pleckstrin_homology,superfamily_Ferritin-like_SF,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030				172	0	0	151	9	5.625
RAI1	0	genome.wustl.edu	37	17	17697887	17697887	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	17697887	17697887	T	C	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.1625	p.V542A	1.000	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				88	0	0	62	23	27.0588
MYO15A	0	genome.wustl.edu	37	17	18077133	18077133	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	18077133	18077133	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	silent	c.10389	p.S3463	0.001	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				104	0	0	76	37	32.7434
LLGL1	0	genome.wustl.edu	37	17	18140983	18140983	+	Silent	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	18140983	18140983	T	A	SNP	LLGL1	ENST00000316843	human	ensembl	74_37	+1	known	silent	c.1800	p.A600	0.826	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL1	HGNC	ENSG00000131899				36	0	0	41	16	28.0702
FLII	0	genome.wustl.edu	37	17	18151054	18151054	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	18151054	18151054	T	C	SNP	FLII	ENST00000327031	human	ensembl	74_37	-1	known	missense	c.2404	p.K802E	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731				36	0	0	32	12	27.2727
FLII	0	genome.wustl.edu	37	17	18157847	18157847	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	18157847	18157847	T	C	SNP	FLII	ENST00000327031	human	ensembl	74_37	-1	known	missense	c.563	p.H188R	1.000	NULL	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731				20	0	0	12	5	29.4118
SLC5A10	0	genome.wustl.edu	37	17	18874389	18874389	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	18874389	18874389	G	T	SNP	SLC5A10	ENST00000395647	human	ensembl	74_37	+1	known	missense	c.704	p.R235M	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A10	HGNC	ENSG00000154025				103	0	0	85	29	25.4386
SNORD3B-1	0	genome.wustl.edu	37	17	18965498	18965498	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	18965498	18965498	C	T	SNP	SNORD3B-1	ENST00000577988	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD3B-1	HGNC	ENSG00000265185				26	0	0	23	6	20.6897
HIC1	0	genome.wustl.edu	37	17	1961428	1961428	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	1961428	1961428	G	A	SNP	HIC1	ENST00000322941	human	ensembl	74_37	+1	known	missense	c.1501	p.G501R	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC1	HGNC	ENSG00000177374				24	0	0	19	10	34.4828
FLJ36000	0	genome.wustl.edu	37	17	21909432	21909432	+	RNA	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	21909432	21909432	G	T	SNP	FLJ36000	ENST00000581223	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RP11-744K17.9	Clone_based_vega_gene	ENSG00000266795				10	0	0	6	3	33.3333
METTL16	0	genome.wustl.edu	37	17	2324130	2324130	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	2324130	2324130	G	A	SNP	METTL16	ENST00000263092	human	ensembl	74_37	-1	known	silent	c.957	p.S319	0.951	pirsf_S-AdoMet-dep_MeTrfase_Mett10D	pfam_rRNA_lsu_MeTfrase_F-like,pirsf_S-AdoMet-dep_MeTrfase_Mett10D	-	no_errors	METTL16	HGNC	ENSG00000127804				336	0	0	184	59	24.2798
TNFAIP1	0	genome.wustl.edu	37	17	26669397	26669397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	26669397	26669397	G	A	SNP	TNFAIP1	ENST00000226225	human	ensembl	74_37	+1	known	missense	c.643	p.G215S	1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	TNFAIP1	HGNC	ENSG00000109079				45	0	0	30	14	31.8182
RAB34	0	genome.wustl.edu	37	17	27042858	27042858	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	27042858	27042858	C	A	SNP	RAB34	ENST00000447716	human	ensembl	74_37	-1	known	nonsense	c.445	p.E149*	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB34	HGNC	ENSG00000109113				251	0	0	162	53	24.6512
TAOK1	0	genome.wustl.edu	37	17	27869900	27869900	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	27869900	27869900	C	T	SNP	TAOK1	ENST00000261716	human	ensembl	74_37	+1	known	nonsense	c.2866	p.R956*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551				49	0	0	34	11	24.4444
OR1A1	0	genome.wustl.edu	37	17	3119024	3119024	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	3119024	3119024	T	C	SNP	OR1A1	ENST00000304094	human	ensembl	74_37	+1	known	missense	c.110	p.I37T	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1A1	HGNC	ENSG00000172146				194	0	0	123	47	27.6471
SLFN11	0	genome.wustl.edu	37	17	33689788	33689788	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	33689788	33689788	A	G	SNP	SLFN11	ENST00000308377	human	ensembl	74_37	-1	known	missense	c.1039	p.W347R	0.009	NULL	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN11	HGNC	ENSG00000172716				91	0	0	63	24	27.5862
GAS2L2	0	genome.wustl.edu	37	17	34074093	34074093	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	34074093	34074093	G	A	SNP	GAS2L2	ENST00000254466	human	ensembl	74_37	-1	known	missense	c.1027	p.P343S	0.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139				97	0	0	70	38	35.1852
RDM1	0	genome.wustl.edu	37	17	34251627	34251627	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	34251627	34251627	A	G	SNP	RDM1	ENST00000293273	human	ensembl	74_37	-1	known	silent	c.549	p.P183	0.003	pfam_Rad52_Rad22	pfam_RRM_dom,pfam_Rad52_Rad22,pfscan_RRM_dom	-	no_errors	RDM1	HGNC	ENSG00000187456				254	0	0	159	66	29.3333
TRPV1	0	genome.wustl.edu	37	17	3475428	3475428	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	3475428	3475428	C	G	SNP	TRPV1	ENST00000399756	human	ensembl	74_37	-1	known	missense	c.2219	p.R740P	1.000	prints_TRPV1-4_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV1	HGNC	ENSG00000196689				43	0	0	33	8	19.5122
GSG2	0	genome.wustl.edu	37	17	3628052	3628052	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	3628052	3628052	C	T	SNP	GSG2	ENST00000325418	human	ensembl	74_37	+1	known	silent	c.823	p.L275	0.005	NULL	pfam_DUF3635,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	GSG2	HGNC	ENSG00000177602				90	0	0	76	27	26.2136
PSMD3	0	genome.wustl.edu	37	17	38146397	38146397	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	38146397	38146397	A	G	SNP	PSMD3	ENST00000264639	human	ensembl	74_37	+1	known	missense	c.928	p.T310A	1.000	smart_PAM	pfam_26S_Psome_reg_C,pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD3	HGNC	ENSG00000108344				88	0	0	69	9	11.5385
CASC3	0	genome.wustl.edu	37	17	38324130	38324130	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	38324130	38324130	A	G	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	missense	c.1679	p.H560R	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				262	0	0	165	49	22.8972
KRT10	0	genome.wustl.edu	37	17	38978389	38978389	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	38978389	38978389	A	G	SNP	KRT10	ENST00000269576	human	ensembl	74_37	-1	known	missense	c.449	p.M150T	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT10	HGNC	ENSG00000186395				85	0	0	65	14	17.7215
KRTAP4-6	0	genome.wustl.edu	37	17	39296254	39296254	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	39296254	39296254	C	T	SNP	KRTAP4-6	ENST00000345847	human	ensembl	74_37	-1	known	silent	c.486	p.P162	0.002	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-6	HGNC	ENSG00000198090				24	0	0	28	3	9.67742
KRTAP4-6	0	genome.wustl.edu	37	17	39296555	39296555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	39296555	39296555	C	T	SNP	KRTAP4-6	ENST00000345847	human	ensembl	74_37	-1	known	missense	c.185	p.R62H	0.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-6	HGNC	ENSG00000198090				134	0	0	100	41	29.078
KRT33B	0	genome.wustl.edu	37	17	39520151	39520151	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	39520151	39520151	G	T	SNP	KRT33B	ENST00000251646	human	ensembl	74_37	-1	known	silent	c.1152	p.S384	0.951	NULL	pfam_IF,prints_Keratin_I	-	no_errors	KRT33B	HGNC	ENSG00000131738				121	0	0	87	26	23.0088
KRT16	0	genome.wustl.edu	37	17	39767417	39767417	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	39767417	39767417	G	A	SNP	KRT16	ENST00000301653	human	ensembl	74_37	-1	known	silent	c.837	p.G279	0.000	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT16	HGNC	ENSG00000186832				174	0	0	111	39	26
TTC25	0	genome.wustl.edu	37	17	40093140	40093140	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	40093140	40093140	C	T	SNP	TTC25	ENST00000377540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815				207	1	0.480769	118	35	22.8758
PLEKHH3	0	genome.wustl.edu	37	17	40828492	40828492	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	40828492	40828492	G	A	SNP	PLEKHH3	ENST00000591022	human	ensembl	74_37	-1	known	silent	c.90	p.S30	1.000	NULL	pfam_MyTH4_dom,pfam_FERM_central,pfam_Ras-assoc,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH3	HGNC	ENSG00000068137				30	0	0	27	12	30.7692
CNTNAP1	0	genome.wustl.edu	37	17	40839807	40839807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	40839807	40839807	G	A	SNP	CNTNAP1	ENST00000264638	human	ensembl	74_37	+1	known	missense	c.1114	p.V372I	0.995	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797				164	0	0	132	55	29.4118
AOC4P	0	genome.wustl.edu	37	17	41019639	41019639	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	41019639	41019639	G	A	SNP	AOC4P	ENST00000562301	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.832	-	-	-	no_errors	AOC4P	HGNC	ENSG00000260105				97	0	0	86	5	5.49451
BRCA1	0	genome.wustl.edu	37	17	41226527	41226527	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	41226527	41226527	G	A	SNP	BRCA1	ENST00000471181	human	ensembl	74_37	-1	known	missense	c.4559	p.S1520F	0.005	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,prints_BRCA1,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048				58	0	0	22	13	37.1429
NBR1	0	genome.wustl.edu	37	17	41345126	41345126	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	41345126	41345126	C	A	SNP	NBR1	ENST00000341165	human	ensembl	74_37	+1	known	silent	c.1089	p.P363	0.879	NULL	pfam_OPR_PB1,pfam_Znf_ZZ,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	NBR1	HGNC	ENSG00000188554				48	0	0	39	9	18.75
DBF4B	0	genome.wustl.edu	37	17	42811492	42811492	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	42811492	42811492	G	A	SNP	DBF4B	ENST00000315005	human	ensembl	74_37	+1	known	silent	c.591	p.A197	0.000	NULL	pfam_Znf_DBF,superfamily_BRCT_dom,smart_Znf_DBF	-	no_errors	DBF4B	HGNC	ENSG00000161692				117	0	0	57	28	32.9412
CRHR1	0	genome.wustl.edu	37	17	43907871	43907871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	43907871	43907871	C	T	SNP	CRHR1	ENST00000398285	human	ensembl	74_37	+1	known	missense	c.731	p.T244I	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF1_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR1	HGNC	ENSG00000120088				182	0	0	206	11	5.06912
KANSL1	0	genome.wustl.edu	37	17	44249250	44249250	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	44249250	44249250	A	G	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	missense	c.260	p.V87A	1.000	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071				171	0	0	82	35	29.9145
MYBBP1A	0	genome.wustl.edu	37	17	4442846	4442846	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	4442846	4442846	T	C	SNP	MYBBP1A	ENST00000381556	human	ensembl	74_37	-1	known	missense	c.3851	p.K1284R	0.937	NULL	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382				356	1	0.280112	232	96	29.2683
TM4SF5	0	genome.wustl.edu	37	17	4685824	4685824	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	4685824	4685824	G	A	SNP	TM4SF5	ENST00000270560	human	ensembl	74_37	+1	known	silent	c.285	p.A95	0.001	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF5	HGNC	ENSG00000142484				152	0	0	108	40	27.027
SPAG9	0	genome.wustl.edu	37	17	49043750	49043750	+	Splice_Site	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	49043750	49043750	T	C	SNP	SPAG9	ENST00000262013	human	ensembl	74_37	-1	known	splice_site	c.3851-2	e30-2	0.936	-	-	-	no_errors	SPAG9	HGNC	ENSG00000008294				115	0	0	61	17	21.7949
SLC52A1	0	genome.wustl.edu	37	17	4937492	4937492	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	4937492	4937492	G	T	SNP	SLC52A1	ENST00000254853	human	ensembl	74_37	-1	known	missense	c.292	p.L98M	0.955	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A1	HGNC	ENSG00000132517				105	0	0	70	23	24.7312
ZNF594	0	genome.wustl.edu	37	17	5087385	5087385	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	5087385	5087385	A	G	SNP	ZNF594	ENST00000399604	human	ensembl	74_37	-1	known	missense	c.167	p.M56T	0.137	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626				136	0	0	80	32	28.5714
LOC100130950	0	genome.wustl.edu	37	17	5137953	5137953	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	5137953	5137953	C	T	SNP	LOC100130950	ENST00000571689	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-333E1.1	Clone_based_vega_gene	ENSG00000261879				16	0	0	11	4	26.6667
AKAP1	0	genome.wustl.edu	37	17	55189188	55189188	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	55189188	55189188	G	A	SNP	AKAP1	ENST00000337714	human	ensembl	74_37	+1	known	silent	c.1878	p.Q626	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_Tudor,pfam_KH_dom_type_1,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	AKAP1	HGNC	ENSG00000121057				138	0	0	97	14	12.6126
LPO	0	genome.wustl.edu	37	17	56344853	56344853	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	56344853	56344853	G	A	SNP	LPO	ENST00000262290	human	ensembl	74_37	+1	known	missense	c.1837	p.A613T	0.998	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419				101	0	0	78	29	27.1028
SMG8	0	genome.wustl.edu	37	17	57289053	57289053	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	57289053	57289053	C	T	SNP	SMG8	ENST00000300917	human	ensembl	74_37	+1	known	silent	c.1641	p.Y547	0.969	pfam_Smg8/Smg9	pfam_Smg8/Smg9	-	no_errors	SMG8	HGNC	ENSG00000167447				102	1	0.970874	60	18	23.0769
RNFT1	0	genome.wustl.edu	37	17	58040355	58040355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	58040355	58040355	C	T	SNP	RNFT1	ENST00000305783	human	ensembl	74_37	-1	known	missense	c.347	p.R116Q	0.995	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNFT1	HGNC	ENSG00000189050				119	0	0	51	28	35.443
USP32	0	genome.wustl.edu	37	17	58259002	58259002	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	58259002	58259002	G	A	SNP	USP32	ENST00000300896	human	ensembl	74_37	-1	known	silent	c.4231	p.L1411	0.990	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_EF_hand_dom,smart_Pept_C19_DUSP,pfscan_EF_hand_dom,pfscan_Peptidase_C19/C67,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832				58	0	0	48	15	23.8095
TBC1D3P2	0	genome.wustl.edu	37	17	60342435	60342435	+	RNA	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	60342435	60342435	T	C	SNP	TBC1D3P2	ENST00000581291	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	TBC1D3P2	HGNC	ENSG00000188755				80	0	0	68	16	19.0476
CD79B	0	genome.wustl.edu	37	17	62007589	62007589	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	62007589	62007589	T	C	SNP	CD79B	ENST00000392795	human	ensembl	74_37	-1	known	missense	c.278	p.E93G	0.001	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM,pfscan_Ig-like_dom	-	no_errors	CD79B	HGNC	ENSG00000007312				82	0	0	60	25	29.4118
PLEKHM1P	0	genome.wustl.edu	37	17	62818377	62818377	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	62818377	62818377	C	T	SNP	PLEKHM1P	ENST00000397718	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.753	-	-	-	no_errors	PLEKHM1P	HGNC	ENSG00000214176				64	0	0	49	14	22.2222
NOL11	0	genome.wustl.edu	37	17	65733740	65733740	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	65733740	65733740	A	C	SNP	NOL11	ENST00000253247	human	ensembl	74_37	+1	known	missense	c.1335	p.K445N	0.971	NULL	pfam_NUC205	-	no_errors	NOL11	HGNC	ENSG00000130935				181	0	0	112	42	27.2727
SLC16A6	0	genome.wustl.edu	37	17	66267454	66267454	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	66267454	66267454	G	A	SNP	SLC16A6	ENST00000327268	human	ensembl	74_37	-1	known	silent	c.847	p.L283	0.003	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932				77	0	0	57	15	20.8333
ABCA10	0	genome.wustl.edu	37	17	67152020	67152020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	67152020	67152020	C	T	SNP	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	missense	c.3502	p.E1168K	0.001	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				124	0	0	84	27	24.3243
ABCA5	0	genome.wustl.edu	37	17	67298973	67298973	+	Silent	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	67298973	67298973	A	C	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	silent	c.1005	p.T335	0.546	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				37	0	0	22	7	24.1379
DVL2	0	genome.wustl.edu	37	17	7130487	7130487	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	7130487	7130487	G	T	SNP	DVL2	ENST00000005340	human	ensembl	74_37	-1	known	silent	c.1465	p.R489	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_2,prints_Dishevelled_fam	-	no_errors	DVL2	HGNC	ENSG00000004975				243	0	0	184	58	23.9669
SDK2	0	genome.wustl.edu	37	17	71386498	71386498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	71386498	71386498	G	A	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	missense	c.4120	p.R1374C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188				28	0	0	19	7	26.9231
NEURL4	0	genome.wustl.edu	37	17	7222050	7222050	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	7222050	7222050	C	T	SNP	NEURL4	ENST00000574120	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NEURL4	HGNC	ENSG00000215041				33	0	0	30	13	30.2326
KIF19	0	genome.wustl.edu	37	17	72346664	72346664	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	72346664	72346664	C	T	SNP	KIF19	ENST00000389916	human	ensembl	74_37	+1	known	silent	c.1338	p.R446	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169				48	0	0	32	10	23.8095
FDXR	0	genome.wustl.edu	37	17	72860170	72860170	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	72860170	72860170	C	T	SNP	FDXR	ENST00000581530	human	ensembl	74_37	-1	known	missense	c.1040	p.R347H	0.665	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	FDXR	HGNC	ENSG00000161513				111	0	0	73	25	25.5102
NUP85	0	genome.wustl.edu	37	17	73208107	73208107	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	73208107	73208107	A	T	SNP	NUP85	ENST00000245544	human	ensembl	74_37	+1	known	missense	c.311	p.N104I	1.000	pfam_Nucleoporin_Nup85	pfam_Nucleoporin_Nup85	-	no_errors	NUP85	HGNC	ENSG00000125450				32	0	0	21	12	36.3636
SPEM1	0	genome.wustl.edu	37	17	7324902	7324902	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	7324902	7324902	A	G	SNP	SPEM1	ENST00000323675	human	ensembl	74_37	+1	known	missense	c.908	p.Y303C	0.958	NULL	NULL	-	no_errors	SPEM1	HGNC	ENSG00000181323				48	0	0	35	8	18.6047
LLGL2	0	genome.wustl.edu	37	17	73554653	73554653	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	73554653	73554653	G	T	SNP	LLGL2	ENST00000392550	human	ensembl	74_37	+1	known	missense	c.316	p.G106C	0.005	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL2	HGNC	ENSG00000073350				15	0	0	22	8	26.6667
RECQL5	0	genome.wustl.edu	37	17	73625168	73625168	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	73625168	73625168	C	T	SNP	RECQL5	ENST00000317905	human	ensembl	74_37	-1	known	missense	c.2335	p.A779T	0.000	pfam_RecQ_helicase-like_5	pfam_RecQ_helicase-like_5,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL5	HGNC	ENSG00000108469				60	0	0	55	23	29.4872
MRPL38	0	genome.wustl.edu	37	17	73894995	73894995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	73894995	73894995	C	T	SNP	MRPL38	ENST00000309352	human	ensembl	74_37	-1	known	missense	c.1079	p.R360Q	1.000	NULL	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	-	no_errors	MRPL38	HGNC	ENSG00000204316				25	0	0	20	9	31.0345
POLR2A	0	genome.wustl.edu	37	17	7416391	7416391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	7416391	7416391	G	A	SNP	POLR2A	ENST00000322644	human	ensembl	74_37	+1	known	missense	c.4808	p.R1603H	1.000	pfam_RNA_pol_II_repeat_euk	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222				340	0	0	232	72	23.6842
SENP3	0	genome.wustl.edu	37	17	7473797	7473797	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	7473797	7473797	C	T	SNP	SENP3	ENST00000429205	human	ensembl	74_37	+1	known	missense	c.1465	p.R489C	1.000	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP3	HGNC	ENSG00000161956				47	0	0	30	9	23.0769
SEC14L1	0	genome.wustl.edu	37	17	75209468	75209468	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	75209468	75209468	G	A	SNP	SEC14L1	ENST00000392476	human	ensembl	74_37	+1	known	missense	c.1936	p.A646T	0.797	superfamily_GOLD,pfscan_GOLD	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1	-	no_errors	SEC14L1	HGNC	ENSG00000129657				41	0	0	36	25	40.9836
TNRC6C	0	genome.wustl.edu	37	17	76047111	76047111	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	76047111	76047111	G	T	SNP	TNRC6C	ENST00000335749	human	ensembl	74_37	+1	known	silent	c.1968	p.G656	0.779	NULL	pfam_Argonaute_hook_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687				35	0	0	18	10	35.7143
RPTOR	0	genome.wustl.edu	37	17	78857713	78857713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	78857713	78857713	G	A	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	missense	c.1783	p.G595S	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				110	0	0	66	38	36.5385
FASN	0	genome.wustl.edu	37	17	80038668	80038668	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	80038668	80038668	C	T	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	silent	c.6726	p.R2242	1.000	pfam_Thioesterase	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				16	0	0	26	3	10.3448
CCDC57	0	genome.wustl.edu	37	17	80146227	80146227	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	80146227	80146227	A	G	SNP	CCDC57	ENST00000389641	human	ensembl	74_37	-1	known	missense	c.920	p.V307A	0.000	NULL	NULL	-	no_errors	CCDC57	HGNC	ENSG00000176155				33	0	0	23	3	11.5385
CTC1	0	genome.wustl.edu	37	17	8133224	8133224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	8133224	8133224	G	A	SNP	CTC1	ENST00000315684	human	ensembl	74_37	-1	known	missense	c.2996	p.P999L	0.152	NULL	NULL	-	no_errors	CTC1	HGNC	ENSG00000178971				76	0	0	52	11	17.4603
MYH10	0	genome.wustl.edu	37	17	8396272	8396272	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	8396272	8396272	T	C	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.4250	p.K1417R	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				170	0	0	112	27	19.4245
MFSD6L	0	genome.wustl.edu	37	17	8701551	8701551	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	8701551	8701551	C	T	SNP	MFSD6L	ENST00000329805	human	ensembl	74_37	-1	known	silent	c.888	p.S296	0.000	NULL	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6L	HGNC	ENSG00000185156				101	0	0	97	16	14.1593
TIMM22	0	genome.wustl.edu	37	17	900433	900433	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	900433	900433	T	C	SNP	TIMM22	ENST00000327158	human	ensembl	74_37	+1	known	silent	c.51	p.G17	0.000	NULL	pfam_Tim17/Tim22/Tim23/PMP24	-	no_errors	TIMM22	HGNC	ENSG00000177370				33	0	0	26	16	38.0952
USP43	0	genome.wustl.edu	37	17	9604465	9604465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	9604465	9604465	C	T	SNP	USP43	ENST00000285199	human	ensembl	74_37	+1	known	missense	c.1565	p.A522V	0.980	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP43	HGNC	ENSG00000154914				16	0	0	12	4	25
LAMA3	0	genome.wustl.edu	37	18	21396419	21396419	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	21396419	21396419	C	T	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	silent	c.2115	p.C705	1.000	pfam_EGF_laminin,smart_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				58	0	0	41	14	25.4545
LRRC37A7P	0	genome.wustl.edu	37	18	29306367	29306367	+	RNA	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	29306367	29306367	G	T	SNP	LRRC37A7P	ENST00000583900	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LRRC37A7P	HGNC	ENSG00000265158				13	0	0	7	5	41.6667
KLHL14	0	genome.wustl.edu	37	18	30350328	30350328	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	30350328	30350328	T	C	SNP	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	missense	c.227	p.D76G	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				34	0	0	30	10	25
ASXL3	0	genome.wustl.edu	37	18	31325872	31325872	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	31325872	31325872	A	G	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	silent	c.6060	p.P2020	0.024	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				48	0	0	14	11	44
CELF4	0	genome.wustl.edu	37	18	34854462	34854462	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	34854462	34854462	C	T	SNP	CELF4	ENST00000590112	human	ensembl	74_37	-1	known	silent	c.561	p.A187	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489				80	0	0	62	12	16.2162
ST8SIA5	0	genome.wustl.edu	37	18	44336400	44336400	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	44336400	44336400	G	A	SNP	ST8SIA5	ENST00000315087	human	ensembl	74_37	-1	known	silent	c.72	p.C24	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA5	HGNC	ENSG00000101638				93	0	0	72	39	35.1351
MRO	0	genome.wustl.edu	37	18	48331614	48331614	+	Silent	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	48331614	48331614	A	C	SNP	MRO	ENST00000436348	human	ensembl	74_37	-1	known	silent	c.381	p.T127	0.246	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MRO	HGNC	ENSG00000134042				127	0	0	79	31	28.1818
ALPK2	0	genome.wustl.edu	37	18	56203904	56203904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	56203904	56203904	G	A	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	missense	c.3515	p.T1172M	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				151	0	0	108	42	28
ZNF532	0	genome.wustl.edu	37	18	56586448	56586448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	56586448	56586448	C	T	SNP	ZNF532	ENST00000336078	human	ensembl	74_37	+1	known	missense	c.929	p.A310V	0.106	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657				182	0	0	109	33	23.2394
SERPINB13	0	genome.wustl.edu	37	18	61260183	61260183	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	61260183	61260183	C	A	SNP	SERPINB13	ENST00000344731	human	ensembl	74_37	+1	known	silent	c.450	p.S150	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB13	HGNC	ENSG00000197641				88	0	0	73	17	18.8889
DOK6	0	genome.wustl.edu	37	18	67425053	67425053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	67425053	67425053	C	T	SNP	DOK6	ENST00000382713	human	ensembl	74_37	+1	known	missense	c.800	p.A267V	0.997	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK6	HGNC	ENSG00000206052				117	0	0	52	24	31.5789
RTTN	0	genome.wustl.edu	37	18	67813014	67813014	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	67813014	67813014	C	T	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	missense	c.2315	p.R772H	0.751	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				99	0	0	66	20	23.2558
RTTN	0	genome.wustl.edu	37	18	67817853	67817853	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	67817853	67817853	G	A	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	silent	c.2046	p.P682	0.278	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				112	0	0	65	20	23.5294
ARHGAP28	0	genome.wustl.edu	37	18	6876205	6876205	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	6876205	6876205	A	T	SNP	ARHGAP28	ENST00000400091	human	ensembl	74_37	+1	known	nonsense	c.1288	p.K430*	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756				48	0	0	23	14	37.8378
ZNF236	0	genome.wustl.edu	37	18	74637264	74637264	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	74637264	74637264	C	T	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.3775	p.R1259C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				84	0	0	61	34	35.7895
PARD6G	0	genome.wustl.edu	37	18	77917966	77917966	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	77917966	77917966	G	A	SNP	PARD6G	ENST00000353265	human	ensembl	74_37	-1	known	silent	c.819	p.T273	0.066	NULL	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6G	HGNC	ENSG00000178184				32	0	0	27	14	34.1463
SOGA2	0	genome.wustl.edu	37	18	8783624	8783624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	8783624	8783624	G	A	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	missense	c.514	p.E172K	0.967	pfam_SOGA	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				31	0	0	26	13	33.3333
SOGA2	0	genome.wustl.edu	37	18	8784564	8784564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	8784564	8784564	G	A	SNP	SOGA2	ENST00000359865	human	ensembl	74_37	+1	known	missense	c.1454	p.R485Q	0.024	NULL	pfam_SOGA	-	no_errors	SOGA2	HGNC	ENSG00000168502				150	0	0	99	40	28.777
C3P1	0	genome.wustl.edu	37	19	10166319	10166319	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	10166319	10166319	C	T	SNP	C3P1	ENST00000495140	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C3P1	HGNC	ENSG00000167798				208	0	0	166	28	14.433
C19orf66	0	genome.wustl.edu	37	19	10200691	10200691	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	10200691	10200691	G	A	SNP	C19orf66	ENST00000253110	human	ensembl	74_37	+1	known	missense	c.352	p.V118I	0.997	NULL	NULL	-	no_errors	C19orf66	HGNC	ENSG00000130813				23	0	0	20	4	16.6667
TYK2	0	genome.wustl.edu	37	19	10461637	10461637	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	10461637	10461637	T	C	SNP	TYK2	ENST00000264818	human	ensembl	74_37	-1	known	missense	c.3437	p.H1146R	0.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_TYK2_N	-	no_errors	TYK2	HGNC	ENSG00000105397				96	0	0	95	9	8.65385
SMARCA4	0	genome.wustl.edu	37	19	11145661	11145661	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	11145661	11145661	C	T	SNP	SMARCA4	ENST00000358026	human	ensembl	74_37	+1	known	silent	c.4023	p.D1341	0.678	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616				15	0	0	18	6	25
ZNF700	0	genome.wustl.edu	37	19	12061033	12061033	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	12061033	12061033	T	C	SNP	ZNF700	ENST00000254321	human	ensembl	74_37	+1	known	missense	c.2194	p.Y732H	0.350	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757				78	0	0	21	17	44.7368
ZNF433	0	genome.wustl.edu	37	19	12127030	12127030	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	12127030	12127030	G	A	SNP	ZNF433	ENST00000344980	human	ensembl	74_37	-1	known	nonsense	c.652	p.R218*	0.431	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF433	HGNC	ENSG00000197647				87	0	0	37	15	28.8462
JUNB	0	genome.wustl.edu	37	19	12902621	12902621	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	12902621	12902621	C	T	SNP	JUNB	ENST00000302754	human	ensembl	74_37	+1	known	silent	c.36	p.D12	1.000	pfam_JNK	pfam_JNK,pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUNB	HGNC	ENSG00000171223				32	0	0	27	7	20.5882
NACC1	0	genome.wustl.edu	37	19	13246114	13246114	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	13246114	13246114	C	T	SNP	NACC1	ENST00000292431	human	ensembl	74_37	+1	known	silent	c.93	p.D31	0.983	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_BEN_domain,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	NACC1	HGNC	ENSG00000160877				101	0	0	65	25	27.7778
ZSWIM4	0	genome.wustl.edu	37	19	13941323	13941323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	13941323	13941323	G	A	SNP	ZSWIM4	ENST00000254323	human	ensembl	74_37	+1	known	missense	c.2429	p.R810H	0.989	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003				126	0	0	118	44	27.1605
NDUFS7	0	genome.wustl.edu	37	19	1395407	1395407	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	1395407	1395407	G	A	SNP	NDUFS7	ENST00000233627	human	ensembl	74_37	+1	known	missense	c.562	p.E188K	1.000	pfam_NADH_UbQ_OxRdtase-like_20kDa,tigrfam_NADH_UQ_OxRdtase_20Kd_su	pfam_NADH_UbQ_OxRdtase-like_20kDa,tigrfam_NADH_UQ_OxRdtase_20Kd_su	-	no_errors	NDUFS7	HGNC	ENSG00000115286				9	0	0	4	7	63.6364
PODNL1	0	genome.wustl.edu	37	19	14044132	14044132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	14044132	14044132	C	T	SNP	PODNL1	ENST00000339560	human	ensembl	74_37	-1	known	missense	c.925	p.G309R	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODNL1	HGNC	ENSG00000132000				20	0	0	13	5	27.7778
SAMD1	0	genome.wustl.edu	37	19	14199317	14199317	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	14199317	14199317	C	A	SNP	SAMD1	ENST00000533683	human	ensembl	74_37	-1	novel	missense	c.1211	p.G404V	1.000	pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD1	HGNC	ENSG00000141858				75	0	0	58	28	32.5581
EMR2	0	genome.wustl.edu	37	19	14865776	14865776	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	14865776	14865776	T	C	SNP	EMR2	ENST00000315576	human	ensembl	74_37	-1	known	missense	c.1580	p.Y527C	0.000	smart_GPS_dom,pfscan_GPS_dom,prints_GPCR_2_CD97	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_CD97,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR2	HGNC	ENSG00000127507				132	0	0	109	16	12.8
EPHX3	0	genome.wustl.edu	37	19	15342847	15342847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	15342847	15342847	C	T	SNP	EPHX3	ENST00000221730	human	ensembl	74_37	-1	known	missense	c.176	p.R59H	0.896	NULL	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX3	HGNC	ENSG00000105131				23	0	0	17	7	29.1667
BRD4	0	genome.wustl.edu	37	19	15364530	15364530	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	15364530	15364530	G	A	SNP	BRD4	ENST00000360016	human	ensembl	74_37	-1	known	silent	c.2223	p.C741	0.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				75	0	0	46	16	25.8065
PGLYRP2	0	genome.wustl.edu	37	19	15580564	15580564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	15580564	15580564	G	A	SNP	PGLYRP2	ENST00000292609	human	ensembl	74_37	-1	known	missense	c.1520	p.A507V	0.978	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP2	HGNC	ENSG00000161031				14	0	0	11	3	21.4286
CALR3	0	genome.wustl.edu	37	19	16595981	16595981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	16595981	16595981	C	T	SNP	CALR3	ENST00000269881	human	ensembl	74_37	-1	known	missense	c.485	p.R162K	0.856	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,pirsf_Calreticulin	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,pirsf_Calreticulin,prints_Calret/calnex	-	no_errors	CALR3	HGNC	ENSG00000269058				34	0	0	26	5	16.129
MED26	0	genome.wustl.edu	37	19	16687442	16687442	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	16687442	16687442	C	T	SNP	MED26	ENST00000263390	human	ensembl	74_37	-1	known	missense	c.1199	p.R400Q	0.687	NULL	pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	MED26	HGNC	ENSG00000105085				48	0	0	35	17	32.6923
TMEM38A	0	genome.wustl.edu	37	19	16790893	16790893	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	16790893	16790893	G	T	SNP	TMEM38A	ENST00000187762	human	ensembl	74_37	+1	known	nonsense	c.223	p.E75*	1.000	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38A	HGNC	ENSG00000072954				79	0	0	50	24	32.4324
ANKLE1	0	genome.wustl.edu	37	19	17396288	17396288	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	17396288	17396288	G	A	SNP	ANKLE1	ENST00000394458	human	ensembl	74_37	+1	known	silent	c.1425	p.E475	0.908	NULL	pfam_Ankyrin_rpt,pfam_LEM_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_LEM/LEM-like_dom,superfamily_Lactate_DH/Glyco_Ohase_4_C,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_LEM_dom	-	no_errors	ANKLE1	HGNC	ENSG00000160117				281	0	0	248	27	9.81818
COLGALT1	0	genome.wustl.edu	37	19	17679430	17679430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	17679430	17679430	C	T	SNP	COLGALT1	ENST00000252599	human	ensembl	74_37	+1	known	missense	c.737	p.A246V	0.991	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT1	HGNC	ENSG00000130309				103	0	0	89	38	29.9213
UNC13A	0	genome.wustl.edu	37	19	17756598	17756598	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	17756598	17756598	G	A	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	silent	c.2505	p.D835	0.989	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477				38	0	0	35	8	18.6047
ATP8B3	0	genome.wustl.edu	37	19	1789491	1789491	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	1789491	1789491	T	C	SNP	ATP8B3	ENST00000539485	human	ensembl	74_37	-1	known	missense	c.2744	p.K915R	0.000	superfamily_HAD-like_dom	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B3	HGNC	ENSG00000130270				36	0	0	18	7	28
CRTC1	0	genome.wustl.edu	37	19	18876267	18876267	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	18876267	18876267	C	G	SNP	CRTC1	ENST00000338797	human	ensembl	74_37	+1	known	missense	c.988	p.L330V	0.998	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662				220	0	0	161	73	31.1966
CRTC1	0	genome.wustl.edu	37	19	18888054	18888054	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	18888054	18888054	C	T	SNP	CRTC1	ENST00000338797	human	ensembl	74_37	+1	known	silent	c.1815	p.F605	0.916	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662				389	0	0	267	116	30.2872
SCAMP4	0	genome.wustl.edu	37	19	1918180	1918180	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	1918180	1918180	G	A	SNP	SCAMP4	ENST00000316097	human	ensembl	74_37	+1	known	missense	c.191	p.G64D	0.334	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP4	HGNC	ENSG00000227500				61	0	0	47	16	25.3968
SLC25A42	0	genome.wustl.edu	37	19	19218784	19218784	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	19218784	19218784	C	T	SNP	SLC25A42	ENST00000318596	human	ensembl	74_37	+1	known	silent	c.579	p.T193	0.064	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Graves_DC	-	no_errors	SLC25A42	HGNC	ENSG00000181035				128	0	0	100	39	28.0576
CILP2	0	genome.wustl.edu	37	19	19655029	19655029	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	19655029	19655029	C	A	SNP	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	missense	c.1675	p.P559T	0.307	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161				172	1	0.578035	129	42	24.5614
ZNF14	0	genome.wustl.edu	37	19	19823270	19823270	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	19823270	19823270	T	A	SNP	ZNF14	ENST00000344099	human	ensembl	74_37	-1	known	missense	c.820	p.T274S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF14	HGNC	ENSG00000105708				63	0	0	58	6	9.375
ENSG00000267268	0	genome.wustl.edu	37	19	20067568	20067568	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	20067568	20067568	G	A	SNP	ENSG00000267268	ENST00000592245	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	AC007204.2	Clone_based_vega_gene	ENSG00000267268				48	0	0	31	9	22.5
ZNF430	0	genome.wustl.edu	37	19	21240479	21240479	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	21240479	21240479	A	G	SNP	ZNF430	ENST00000261560	human	ensembl	74_37	+1	known	silent	c.1365	p.K455	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF430	HGNC	ENSG00000118620				50	0	0	32	9	21.9512
LOC641367	0	genome.wustl.edu	37	19	21934392	21934392	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	21934392	21934392	A	G	SNP	LOC641367	ENST00000596710	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-420K14.6	Clone_based_vega_gene	ENSG00000269845				55	0	0	27	7	20.5882
ZNF43	0	genome.wustl.edu	37	19	21992322	21992322	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	21992322	21992322	G	T	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	missense	c.517	p.L173I	0.102	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				32	0	0	21	12	36.3636
DOT1L	0	genome.wustl.edu	37	19	2226315	2226315	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	2226315	2226315	C	T	SNP	DOT1L	ENST00000398665	human	ensembl	74_37	+1	known	silent	c.3795	p.S1265	0.001	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885				28	0	0	19	5	20.8333
ZNF729	0	genome.wustl.edu	37	19	22497926	22497926	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	22497926	22497926	G	A	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	silent	c.1707	p.E569	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				24	0	0	16	4	20
JSRP1	0	genome.wustl.edu	37	19	2255261	2255261	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	2255261	2255261	C	T	SNP	JSRP1	ENST00000300961	human	ensembl	74_37	-1	known	missense	c.53	p.C18Y	0.933	NULL	NULL	-	no_errors	JSRP1	HGNC	ENSG00000167476				40	0	0	34	16	32
ZNF724P	0	genome.wustl.edu	37	19	23405833	23405833	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	23405833	23405833	G	A	SNP	ZNF724P	ENST00000418100	human	ensembl	74_37	-1	novel	missense	c.1214	p.T405I	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF724P	HGNC	ENSG00000196081				35	0	0	13	7	35
TMPRSS9	0	genome.wustl.edu	37	19	2405448	2405448	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	2405448	2405448	G	A	SNP	TMPRSS9	ENST00000332578	human	ensembl	74_37	+1	known	silent	c.645	p.P215	0.081	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS9	HGNC	ENSG00000178297				125	0	0	120	21	14.8936
ZNF254	0	genome.wustl.edu	37	19	24309953	24309953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	24309953	24309953	G	A	SNP	ZNF254	ENST00000357002	human	ensembl	74_37	+1	known	missense	c.1151	p.G384D	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096				37	0	0	23	12	34.2857
C19orf12	0	genome.wustl.edu	37	19	30193764	30193764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	30193764	30193764	G	A	SNP	C19orf12	ENST00000392278	human	ensembl	74_37	-1	known	missense	c.314	p.A105V	0.982	NULL	NULL	-	no_errors	C19orf12	HGNC	ENSG00000131943				135	0	0	105	25	19.2308
TSHZ3	0	genome.wustl.edu	37	19	31769082	31769082	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	31769082	31769082	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	silent	c.1617	p.N539	0.959	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				212	0	0	128	47	26.8571
NFIC	0	genome.wustl.edu	37	19	3381902	3381902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	3381902	3381902	C	T	SNP	NFIC	ENST00000443272	human	ensembl	74_37	+1	known	missense	c.223	p.R75W	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIC	HGNC	ENSG00000141905				165	0	0	104	59	36.1963
PEPD	0	genome.wustl.edu	37	19	33980942	33980942	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	33980942	33980942	C	T	SNP	PEPD	ENST00000244137	human	ensembl	74_37	-1	known	missense	c.463	p.G155S	0.995	NULL	pfam_Pept_M24_structural-domain,pfam_Aminopep_P_N,superfamily_Pept_M24_structural-domain	-	no_errors	PEPD	HGNC	ENSG00000124299				25	0	0	24	7	22.5806
UBA2	0	genome.wustl.edu	37	19	34934770	34934770	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	34934770	34934770	T	C	SNP	UBA2	ENST00000246548	human	ensembl	74_37	+1	known	silent	c.603	p.D201	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA2	HGNC	ENSG00000126261				123	0	0	55	21	27.6316
GRAMD1A	0	genome.wustl.edu	37	19	35517005	35517005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	35517005	35517005	C	T	SNP	GRAMD1A	ENST00000317991	human	ensembl	74_37	+1	known	missense	c.2135	p.P712L	0.998	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1A	HGNC	ENSG00000089351				79	0	0	57	19	25
FFAR2	0	genome.wustl.edu	37	19	35941299	35941299	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	35941299	35941299	T	G	SNP	FFAR2	ENST00000246549	human	ensembl	74_37	+1	known	missense	c.683	p.L228R	0.993	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_GPR40-rel_orph	-	no_errors	FFAR2	HGNC	ENSG00000126262				127	0	0	107	33	23.5714
ATP4A	0	genome.wustl.edu	37	19	36050092	36050092	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	36050092	36050092	A	C	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	missense	c.1058	p.V353G	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				198	0	0	171	33	16.1765
KMT2B	0	genome.wustl.edu	37	19	36211209	36211209	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	36211209	36211209	C	A	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	silent	c.960	p.S320	1.000	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				29	0	0	14	7	33.3333
KMT2B	0	genome.wustl.edu	37	19	36228041	36228041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	36228041	36228041	C	T	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.7427	p.A2476V	1.000	pirsf_MeTrfase_trithorax,pfam_FYrich_C,smart_FYrich_C	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				13	0	0	20	3	13.0435
PRODH2	0	genome.wustl.edu	37	19	36297674	36297674	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	36297674	36297674	G	T	SNP	PRODH2	ENST00000301175	human	ensembl	74_37	-1	known	missense	c.965	p.P322H	0.995	pfam_Proline_DH	pfam_Proline_DH	-	no_errors	PRODH2	HGNC	ENSG00000250799				41	0	0	24	11	31.4286
SIPA1L3	0	genome.wustl.edu	37	19	38572874	38572874	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	38572874	38572874	C	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	silent	c.669	p.N223	0.440	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				97	0	0	97	25	20.4918
SIPA1L3	0	genome.wustl.edu	37	19	38684402	38684402	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	38684402	38684402	G	A	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	missense	c.4822	p.G1608S	0.786	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				17	0	0	11	6	35.2941
SPINT2	0	genome.wustl.edu	37	19	38778555	38778555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	38778555	38778555	C	T	SNP	SPINT2	ENST00000301244	human	ensembl	74_37	+1	known	missense	c.317	p.A106V	0.033	NULL	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	SPINT2	HGNC	ENSG00000167642				217	0	0	145	42	22.4599
GGN	0	genome.wustl.edu	37	19	38876364	38876364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	38876364	38876364	G	A	SNP	GGN	ENST00000334928	human	ensembl	74_37	-1	known	missense	c.1538	p.A513V	0.026	NULL	NULL	-	no_errors	GGN	HGNC	ENSG00000179168				38	0	0	32	4	11.1111
FAM98C	0	genome.wustl.edu	37	19	38899406	38899406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	38899406	38899406	G	A	SNP	FAM98C	ENST00000252530	human	ensembl	74_37	+1	known	missense	c.934	p.V312I	0.993	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244				116	0	0	69	41	37.2727
RYR1	0	genome.wustl.edu	37	19	39018309	39018309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	39018309	39018309	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.10709	p.R3570H	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				45	0	0	33	14	29.7872
DAPK3	0	genome.wustl.edu	37	19	3959164	3959164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	3959164	3959164	C	T	SNP	DAPK3	ENST00000301264	human	ensembl	74_37	-1	known	missense	c.1300	p.V434M	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DAPK3	HGNC	ENSG00000167657				16	0	0	9	7	43.75
MED29	0	genome.wustl.edu	37	19	39882043	39882043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	39882043	39882043	C	T	SNP	MED29	ENST00000315588	human	ensembl	74_37	+1	known	missense	c.44	p.P15L	0.992	NULL	pfam_Mediator_Med29_met	-	no_errors	MED29	HGNC	ENSG00000063322				44	0	0	27	11	28.9474
PIAS4	0	genome.wustl.edu	37	19	4013167	4013167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	4013167	4013167	C	T	SNP	PIAS4	ENST00000262971	human	ensembl	74_37	+1	known	missense	c.274	p.R92W	0.997	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS4	HGNC	ENSG00000105229				134	0	0	110	35	24.1379
FCGBP	0	genome.wustl.edu	37	19	40398294	40398294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	40398294	40398294	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.6673	p.V2225M	0.003	smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				41	0	0	24	7	22.5806
FCGBP	0	genome.wustl.edu	37	19	40433949	40433949	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	40433949	40433949	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.320	p.A107V	0.928	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				132	0	0	95	24	20.1681
PRX	0	genome.wustl.edu	37	19	40901573	40901573	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	40901573	40901573	A	G	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	missense	c.2686	p.F896L	0.151	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227				152	0	0	120	26	17.8082
CYP2A7	0	genome.wustl.edu	37	19	41383195	41383195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	41383195	41383195	G	A	SNP	CYP2A7	ENST00000301146	human	ensembl	74_37	-1	known	missense	c.1061	p.A354V	0.997	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2B-like	-	no_errors	CYP2A7	HGNC	ENSG00000198077				126	0	0	106	33	23.741
CCDC97	0	genome.wustl.edu	37	19	41822577	41822577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	41822577	41822577	G	A	SNP	CCDC97	ENST00000269967	human	ensembl	74_37	+1	known	missense	c.335	p.R112H	0.997	NULL	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039				68	0	0	52	16	23.5294
CCDC97	0	genome.wustl.edu	37	19	41825583	41825583	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	41825583	41825583	C	A	SNP	CCDC97	ENST00000269967	human	ensembl	74_37	+1	known	missense	c.607	p.P203T	0.648	pfam_DUF2052_coiled-coil	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039				156	0	0	112	46	29.1139
CEACAM3	0	genome.wustl.edu	37	19	42301803	42301803	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	42301803	42301803	A	C	SNP	CEACAM3	ENST00000357396	human	ensembl	74_37	+1	known	missense	c.347	p.D116A	0.020	pfam_Ig_V-set	pfam_Ig_V-set	-	no_errors	CEACAM3	HGNC	ENSG00000170956				389	0	0	246	77	23.839
CD79A	0	genome.wustl.edu	37	19	42383115	42383115	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	42383115	42383115	C	T	SNP	CD79A	ENST00000221972	human	ensembl	74_37	+1	known	silent	c.135	p.S45	0.000	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Phos_immunorcpt_sig_ITAM,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM,pfscan_Ig-like_dom	-	no_errors	CD79A	HGNC	ENSG00000105369				72	0	0	47	23	32.8571
ARHGEF1	0	genome.wustl.edu	37	19	42406803	42406803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	42406803	42406803	G	A	SNP	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	missense	c.1663	p.V555M	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928				70	0	0	50	24	32.4324
ATP1A3	0	genome.wustl.edu	37	19	42482399	42482399	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	42482399	42482399	C	T	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	silent	c.1710	p.T570	0.019	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				36	0	0	24	5	17.2414
PSG6	0	genome.wustl.edu	37	19	43420541	43420541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	43420541	43420541	C	T	SNP	PSG6	ENST00000292125	human	ensembl	74_37	-1	known	missense	c.163	p.V55I	0.001	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG6	HGNC	ENSG00000170848				345	0	0	242	75	23.6593
PSG2	0	genome.wustl.edu	37	19	43579535	43579535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	43579535	43579535	C	T	SNP	PSG2	ENST00000406487	human	ensembl	74_37	-1	known	missense	c.680	p.R227H	0.010	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG2	HGNC	ENSG00000242221				542	0	0	392	109	21.7565
ZNF224	0	genome.wustl.edu	37	19	44611445	44611445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	44611445	44611445	G	A	SNP	ZNF224	ENST00000336976	human	ensembl	74_37	+1	known	missense	c.1132	p.G378R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF224	HGNC	ENSG00000267680				124	0	0	80	36	31.0345
HDGFRP2	0	genome.wustl.edu	37	19	4498835	4498835	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	4498835	4498835	C	A	SNP	HDGFRP2	ENST00000301284	human	ensembl	74_37	+1	known	missense	c.1498	p.L500I	0.350	pfam_LEDGF	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	HDGFRP2	Uniprot_gn	ENSG00000167674				34	0	0	16	7	30.4348
PPM1N	0	genome.wustl.edu	37	19	46002428	46002428	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	46002428	46002428	T	C	SNP	PPM1N	ENST00000451287	human	ensembl	74_37	+1	known	missense	c.698	p.L233S	0.986	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1N	HGNC	ENSG00000213889				48	0	0	34	14	29.1667
DMPK	0	genome.wustl.edu	37	19	46274895	46274895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	46274895	46274895	G	A	SNP	DMPK	ENST00000343373	human	ensembl	74_37	-1	known	missense	c.1561	p.R521W	0.598	pfam_Myotonic_dystrophy_kinase_coil	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	DMPK	HGNC	ENSG00000104936				66	0	0	47	8	14.5455
PTGIR	0	genome.wustl.edu	37	19	47127183	47127183	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	47127183	47127183	G	T	SNP	PTGIR	ENST00000291294	human	ensembl	74_37	-1	known	silent	c.300	p.T100	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostanoid_rcpt,prints_Thbox_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_IP_rcpt,prints_Prostanoid_rcpt,prints_Thbox_rcpt	-	no_errors	PTGIR	HGNC	ENSG00000160013				21	0	0	12	5	29.4118
PRKD2	0	genome.wustl.edu	37	19	47201052	47201052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	47201052	47201052	G	A	SNP	PRKD2	ENST00000291281	human	ensembl	74_37	-1	known	missense	c.1177	p.R393W	0.814	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD2	HGNC	ENSG00000105287				175	0	0	133	50	27.3224
SLC8A2	0	genome.wustl.edu	37	19	47960734	47960734	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	47960734	47960734	G	A	SNP	SLC8A2	ENST00000236877	human	ensembl	74_37	-1	known	missense	c.793	p.R265C	1.000	tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160				28	0	0	17	10	37.037
GLTSCR1	0	genome.wustl.edu	37	19	48183378	48183378	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	48183378	48183378	C	T	SNP	GLTSCR1	ENST00000396720	human	ensembl	74_37	+1	known	silent	c.951	p.T317	0.001	NULL	NULL	-	no_errors	GLTSCR1	HGNC	ENSG00000063169				11	0	0	8	4	33.3333
ZNF114	0	genome.wustl.edu	37	19	48789695	48789695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	48789695	48789695	G	A	SNP	ZNF114	ENST00000315849	human	ensembl	74_37	+1	known	missense	c.814	p.A272T	0.000	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150				110	0	0	79	34	30.0885
KDELR1	0	genome.wustl.edu	37	19	48892969	48892969	+	Splice_Site	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	48892969	48892969	C	T	SNP	KDELR1	ENST00000330720	human	ensembl	74_37	-1	known	splice_site	c.193-1	e3-1	1.000	-	-	-	no_errors	KDELR1	HGNC	ENSG00000105438				73	0	0	48	17	26.1538
RPL18	0	genome.wustl.edu	37	19	49120017	49120017	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	49120017	49120017	T	C	SNP	RPL18	ENST00000549920	human	ensembl	74_37	-1	known	missense	c.263	p.D88G	1.000	pfam_Ribosomal_L18e/L15P,superfamily_Ribosomal_L18e/L15P	pfam_Ribosomal_L18e/L15P,superfamily_Ribosomal_L18e/L15P	-	no_errors	RPL18	HGNC	ENSG00000063177				167	0	0	100	41	29.078
SEC1P	0	genome.wustl.edu	37	19	49184153	49184153	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	49184153	49184153	C	T	SNP	SEC1P	ENST00000430145	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	SEC1P	HGNC	ENSG00000232871				20	0	0	10	5	33.3333
PPFIA3	0	genome.wustl.edu	37	19	49631308	49631308	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	49631308	49631308	C	T	SNP	PPFIA3	ENST00000334186	human	ensembl	74_37	+1	known	silent	c.178	p.L60	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380				25	0	0	30	8	21.0526
FLT3LG	0	genome.wustl.edu	37	19	49979372	49979372	+	Splice_Site	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	49979372	49979372	A	G	SNP	FLT3LG	ENST00000600084	human	ensembl	74_37	+1	known	splice_site	c.145-2	e3-2	0.002	-	-	-	no_errors	FLT3LG	HGNC	ENSG00000090554				288	0	0	203	50	19.7628
PTOV1	0	genome.wustl.edu	37	19	50361197	50361197	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	50361197	50361197	C	T	SNP	PTOV1	ENST00000391842	human	ensembl	74_37	+1	known	silent	c.841	p.L281	1.000	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960				84	0	0	77	25	24.5098
NUP62	0	genome.wustl.edu	37	19	50412227	50412227	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	50412227	50412227	T	C	SNP	NUP62	ENST00000352066	human	ensembl	74_37	-1	known	missense	c.838	p.T280A	0.000	NULL	pfam_Nucleoporin_NSP1_C	-	no_errors	NUP62	HGNC	ENSG00000213024				82	0	0	55	20	26.6667
NUP62	0	genome.wustl.edu	37	19	50412228	50412228	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	50412228	50412228	G	A	SNP	NUP62	ENST00000352066	human	ensembl	74_37	-1	known	silent	c.837	p.A279	0.000	NULL	pfam_Nucleoporin_NSP1_C	-	no_errors	NUP62	HGNC	ENSG00000213024				84	0	0	55	20	26.6667
VRK3	0	genome.wustl.edu	37	19	50512565	50512565	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	50512565	50512565	G	A	SNP	VRK3	ENST00000316763	human	ensembl	74_37	-1	known	nonsense	c.217	p.R73*	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	VRK3	HGNC	ENSG00000105053				253	1	0.393701	162	47	22.488
POLD1	0	genome.wustl.edu	37	19	50905959	50905959	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	50905959	50905959	C	T	SNP	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	missense	c.931	p.R311C	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822				25	0	0	16	13	44.8276
MYBPC2	0	genome.wustl.edu	37	19	50954194	50954194	+	Splice_Site	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	50954194	50954194	T	C	SNP	MYBPC2	ENST00000357701	human	ensembl	74_37	+1	known	splice_site	c.1579+2	e14+2	0.994	-	-	-	no_errors	MYBPC2	HGNC	ENSG00000086967				10	0	0	4	3	42.8571
KLK4	0	genome.wustl.edu	37	19	51412062	51412062	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	51412062	51412062	A	G	SNP	KLK4	ENST00000324041	human	ensembl	74_37	-1	known	missense	c.248	p.L83P	0.295	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK4	HGNC	ENSG00000167749				93	0	0	71	13	15.4762
KLK13	0	genome.wustl.edu	37	19	51561889	51561889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	51561889	51561889	C	T	SNP	KLK13	ENST00000595793	human	ensembl	74_37	-1	known	missense	c.551	p.R184H	0.972	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK13	HGNC	ENSG00000167759				248	0	0	167	53	24.0909
SIGLEC6	0	genome.wustl.edu	37	19	52023335	52023335	+	RNA	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	52023335	52023335	C	A	SNP	SIGLEC6	ENST00000474054	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.095	-	-	-	no_errors	SIGLEC6	HGNC	ENSG00000105492				143	0	0	89	33	27.0492
HAS1	0	genome.wustl.edu	37	19	52216727	52216727	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	52216727	52216727	G	A	SNP	HAS1	ENST00000601714	human	ensembl	74_37	-1	known	missense	c.1711	p.R571W	1.000	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509				17	0	0	27	5	15.625
FPR1	0	genome.wustl.edu	37	19	52249490	52249490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	52249490	52249490	C	T	SNP	FPR1	ENST00000304748	human	ensembl	74_37	-1	known	missense	c.758	p.C253Y	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Formyl_pep_rcpt,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt	-	no_errors	FPR1	HGNC	ENSG00000171051				66	0	0	48	17	26.1538
PTPRS	0	genome.wustl.edu	37	19	5244257	5244257	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	5244257	5244257	C	T	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.1228	p.G410S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				64	0	0	74	31	29.5238
ZNF836	0	genome.wustl.edu	37	19	52660033	52660033	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	52660033	52660033	C	T	SNP	ZNF836	ENST00000322146	human	ensembl	74_37	-1	known	silent	c.903	p.P301	0.147	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF836	HGNC	ENSG00000196267				69	0	0	38	15	28.3019
ZNF347	0	genome.wustl.edu	37	19	53645115	53645115	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	53645115	53645115	A	T	SNP	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	nonsense	c.969	p.C323*	0.984	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937				175	0	0	111	6	5.12821
ZNF331	0	genome.wustl.edu	37	19	54081131	54081131	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	54081131	54081131	C	T	SNP	ZNF331	ENST00000253144	human	ensembl	74_37	+1	known	silent	c.1317	p.Y439	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF331	HGNC	ENSG00000130844				67	0	0	49	17	25.7576
CACNG7	0	genome.wustl.edu	37	19	54418710	54418710	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	54418710	54418710	G	A	SNP	CACNG7	ENST00000222212	human	ensembl	74_37	+1	known	silent	c.375	p.P125	0.046	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g7su,prints_VDCC_gsu	-	no_errors	CACNG7	HGNC	ENSG00000105605				91	0	0	54	20	27.027
CACNG7	0	genome.wustl.edu	37	19	54444871	54444871	+	Splice_Site	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	54444871	54444871	T	C	SNP	CACNG7	ENST00000222212	human	ensembl	74_37	+1	known	splice_site	c.570+2	e4+2	1.000	-	-	-	no_errors	CACNG7	HGNC	ENSG00000105605				154	0	0	108	37	25.5172
LENG1	0	genome.wustl.edu	37	19	54660546	54660546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	54660546	54660546	C	T	SNP	LENG1	ENST00000222224	human	ensembl	74_37	-1	known	missense	c.530	p.R177H	0.000	NULL	NULL	-	no_errors	LENG1	HGNC	ENSG00000105617				149	0	0	105	31	22.7941
MBOAT7	0	genome.wustl.edu	37	19	54677813	54677813	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	54677813	54677813	A	G	SNP	MBOAT7	ENST00000245615	human	ensembl	74_37	-1	known	silent	c.1344	p.G448	0.284	NULL	pfam_MBOAT_fam	-	no_errors	MBOAT7	HGNC	ENSG00000125505				75	0	0	48	12	20
LILRA6	0	genome.wustl.edu	37	19	54744364	54744364	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	54744364	54744364	C	A	SNP	LILRA6	ENST00000419410	human	ensembl	74_37	-1	known	silent	c.1044	p.R348	0.000	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRA6	HGNC	ENSG00000244482				181	0	0	141	22	13.4969
TTYH1	0	genome.wustl.edu	37	19	54947281	54947281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	54947281	54947281	G	A	SNP	TTYH1	ENST00000376531	human	ensembl	74_37	+1	known	missense	c.1279	p.A427T	1.000	NULL	pfam_Tweety	-	no_errors	TTYH1	HGNC	ENSG00000167614				309	0	0	230	54	19.0141
NLRP7	0	genome.wustl.edu	37	19	55451098	55451098	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	55451098	55451098	G	A	SNP	NLRP7	ENST00000446217	human	ensembl	74_37	-1	known	silent	c.1173	p.P391	0.393	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634				91	0	0	62	6	8.82353
EPS8L1	0	genome.wustl.edu	37	19	55597445	55597445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	55597445	55597445	G	A	SNP	EPS8L1	ENST00000201647	human	ensembl	74_37	+1	known	missense	c.1535	p.R512H	0.977	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L1	HGNC	ENSG00000131037				102	0	0	83	29	25.8929
NLRP9	0	genome.wustl.edu	37	19	56223313	56223313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	56223313	56223313	C	T	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	missense	c.2696	p.R899H	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				86	0	0	59	18	23.3766
NLRP11	0	genome.wustl.edu	37	19	56321601	56321601	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	56321601	56321601	C	T	SNP	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	silent	c.375	p.S125	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873				60	0	0	27	5	15.625
ZSCAN5A	0	genome.wustl.edu	37	19	56733224	56733224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	56733224	56733224	C	T	SNP	ZSCAN5A	ENST00000391713	human	ensembl	74_37	-1	known	missense	c.1211	p.R404Q	0.105	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848				55	0	0	39	8	17.0213
ZNF835	0	genome.wustl.edu	37	19	57176222	57176222	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	57176222	57176222	G	A	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	silent	c.345	p.C115	0.939	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				118	0	0	77	25	24.5098
ZNF587	0	genome.wustl.edu	37	19	58367565	58367565	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	58367565	58367565	G	A	SNP	ZNF587	ENST00000339656	human	ensembl	74_37	+1	known	missense	c.127	p.V43M	0.953	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF587	HGNC	ENSG00000198466				128	0	0	94	39	29.3233
ZNF814	0	genome.wustl.edu	37	19	58384974	58384974	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	58384974	58384974	T	C	SNP	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	missense	c.1784	p.Q595R	0.814	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				70	0	0	53	4	7.01754
ZNF418	0	genome.wustl.edu	37	19	58438212	58438212	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	58438212	58438212	C	T	SNP	ZNF418	ENST00000396147	human	ensembl	74_37	-1	known	missense	c.1337	p.R446Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF418	HGNC	ENSG00000196724				234	1	0.425532	116	56	32.5581
ZNF256	0	genome.wustl.edu	37	19	58453320	58453320	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	58453320	58453320	G	A	SNP	ZNF256	ENST00000282308	human	ensembl	74_37	-1	known	nonsense	c.856	p.R286*	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF256	HGNC	ENSG00000152454				152	0	0	95	32	25.1969
ZSCAN1	0	genome.wustl.edu	37	19	58549600	58549600	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	58549600	58549600	G	T	SNP	ZSCAN1	ENST00000391700	human	ensembl	74_37	+1	known	silent	c.396	p.P132	0.001	smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467				19	0	0	10	3	23.0769
ZNF274	0	genome.wustl.edu	37	19	58718166	58718166	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	58718166	58718166	G	T	SNP	ZNF274	ENST00000326804	human	ensembl	74_37	+1	known	missense	c.336	p.E112D	0.968	NULL	pfam_Krueppel-associated_box,pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF274	HGNC	ENSG00000171606				46	0	0	19	8	29.6296
ZNF8	0	genome.wustl.edu	37	19	58805539	58805539	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	58805539	58805539	C	T	SNP	ZNF8	ENST00000196548	human	ensembl	74_37	+1	known	missense	c.365	p.T122M	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF8	Uniprot_gn	ENSG00000083842				61	0	0	45	22	32.8358
CAPS	0	genome.wustl.edu	37	19	5915081	5915081	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	5915081	5915081	G	A	SNP	CAPS	ENST00000222125	human	ensembl	74_37	+1	known	missense	c.392	p.R131H	0.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CAPS	HGNC	ENSG00000105519				148	0	0	128	43	25.1462
HCN2	0	genome.wustl.edu	37	19	613971	613971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	613971	613971	C	T	SNP	HCN2	ENST00000251287	human	ensembl	74_37	+1	known	missense	c.1945	p.R649W	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822				67	0	0	35	23	39.6552
ACER1	0	genome.wustl.edu	37	19	6312428	6312428	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	6312428	6312428	A	G	SNP	ACER1	ENST00000301452	human	ensembl	74_37	-1	known	missense	c.176	p.I59T	0.022	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER1	HGNC	ENSG00000167769				220	0	0	153	52	25.3659
MISP	0	genome.wustl.edu	37	19	758640	758640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	758640	758640	G	A	SNP	MISP	ENST00000215582	human	ensembl	74_37	+1	known	missense	c.1694	p.R565Q	0.781	NULL	NULL	-	no_errors	MISP	HGNC	ENSG00000099812				118	0	0	71	32	31.068
PNPLA6	0	genome.wustl.edu	37	19	7623981	7623981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	7623981	7623981	C	T	SNP	PNPLA6	ENST00000414982	human	ensembl	74_37	+1	known	missense	c.3673	p.R1225C	1.000	superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444				87	0	0	59	21	26.25
CAMSAP3	0	genome.wustl.edu	37	19	7676704	7676704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	7676704	7676704	C	T	SNP	CAMSAP3	ENST00000446248	human	ensembl	74_37	+1	known	missense	c.1406	p.P469L	0.195	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP3	HGNC	ENSG00000076826				26	0	0	22	7	24.1379
MYO1F	0	genome.wustl.edu	37	19	8620596	8620596	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	8620596	8620596	C	T	SNP	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	missense	c.88	p.E30K	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				132	0	0	90	22	19.6429
ADAMTS10	0	genome.wustl.edu	37	19	8670086	8670086	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	8670086	8670086	C	T	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	silent	c.246	p.S82	0.088	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				50	0	0	32	8	20
MUC16	0	genome.wustl.edu	37	19	9068980	9068980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	9068980	9068980	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.18466	p.A6156T	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				66	0	0	45	12	21.0526
MUC16	0	genome.wustl.edu	37	19	9069065	9069065	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	9069065	9069065	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.18381	p.S6127	0.008	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				38	0	0	20	5	20
POU3F3	0	genome.wustl.edu	37	2	105473462	105473462	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	105473462	105473462	C	T	SNP	POU3F3	ENST00000361360	human	ensembl	74_37	+1	known	silent	c.1494	p.S498	1.000	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F3	HGNC	ENSG00000198914				20	0	0	18	7	28
SULT1C2	0	genome.wustl.edu	37	2	108921046	108921046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	108921046	108921046	G	A	SNP	SULT1C2	ENST00000326853	human	ensembl	74_37	+1	known	missense	c.425	p.R142Q	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1C2	HGNC	ENSG00000198203				180	0	0	128	47	26.8571
RANBP2	0	genome.wustl.edu	37	2	109347799	109347799	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	109347799	109347799	A	G	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.274	p.T92A	1.000	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				72	0	0	36	19	34.5455
CCDC138	0	genome.wustl.edu	37	2	109463340	109463340	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	109463340	109463340	A	G	SNP	CCDC138	ENST00000295124	human	ensembl	74_37	+1	known	silent	c.1470	p.P490	0.127	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006				61	0	0	49	17	25.7576
NPHP1	0	genome.wustl.edu	37	2	110927445	110927445	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	110927445	110927445	C	T	SNP	NPHP1	ENST00000316534	human	ensembl	74_37	-1	known	missense	c.460	p.G154S	0.000	superfamily_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061				57	0	0	38	14	26.9231
RGPD8	0	genome.wustl.edu	37	2	113161636	113161636	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	113161636	113161636	A	G	SNP	RGPD8	ENST00000302558	human	ensembl	74_37	-1	known	missense	c.1183	p.S395P	0.992	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD8	HGNC	ENSG00000169629				28	0	0	5	11	68.75
POLR1B	0	genome.wustl.edu	37	2	113315657	113315657	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	113315657	113315657	A	G	SNP	POLR1B	ENST00000541869	human	ensembl	74_37	+1	known	silent	c.1443	p.T481	1.000	NULL	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630				38	0	0	18	7	28
ROCK2	0	genome.wustl.edu	37	2	11351805	11351805	+	Splice_Site	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	11351805	11351805	A	G	SNP	ROCK2	ENST00000315872	human	ensembl	74_37	-1	known	splice_site	c.2203+2	e18+2	1.000	-	-	-	no_errors	ROCK2	HGNC	ENSG00000134318				95	0	0	80	22	21.5686
FOXD4L1	0	genome.wustl.edu	37	2	114256886	114256886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	114256886	114256886	G	A	SNP	FOXD4L1	ENST00000306507	human	ensembl	74_37	+1	known	missense	c.53	p.R18Q	0.953	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L1	HGNC	ENSG00000184492				126	0	0	85	44	34.1085
EPB41L5	0	genome.wustl.edu	37	2	120844814	120844814	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	120844814	120844814	C	T	SNP	EPB41L5	ENST00000263713	human	ensembl	74_37	+1	known	nonsense	c.871	p.Q291*	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L5	HGNC	ENSG00000115109				38	0	0	37	14	27.451
WDR33	0	genome.wustl.edu	37	2	128477600	128477600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	128477600	128477600	G	A	SNP	WDR33	ENST00000322313	human	ensembl	74_37	-1	known	missense	c.1999	p.R667W	0.993	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709				82	0	0	72	13	15.2941
TRIB2	0	genome.wustl.edu	37	2	12863670	12863670	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	12863670	12863670	C	T	SNP	TRIB2	ENST00000155926	human	ensembl	74_37	+1	known	silent	c.555	p.D185	0.871	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575				76	0	0	68	24	26.087
HS6ST1	0	genome.wustl.edu	37	2	129025780	129025780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	129025780	129025780	C	T	SNP	HS6ST1	ENST00000259241	human	ensembl	74_37	-1	known	missense	c.1192	p.V398M	0.997	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST1	HGNC	ENSG00000136720				52	0	0	32	6	15.7895
POTEE	0	genome.wustl.edu	37	2	132021903	132021903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	132021903	132021903	G	A	SNP	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	missense	c.2875	p.E959K	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219				68	0	0	78	14	15.2174
LRP1B	0	genome.wustl.edu	37	2	141143557	141143557	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	141143557	141143557	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.10436	p.H3479R	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				128	0	0	73	29	28.4314
LRP1B	0	genome.wustl.edu	37	2	141641551	141641551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	141641551	141641551	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.4004	p.A1335V	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				142	0	0	82	25	23.3645
GTDC1	0	genome.wustl.edu	37	2	144765060	144765060	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	144765060	144765060	G	A	SNP	GTDC1	ENST00000344850	human	ensembl	74_37	-1	known	silent	c.564	p.L188	0.108	NULL	pfam_GlycosylTrfase_1_N,pfam_Glyco_trans_1	-	no_errors	GTDC1	HGNC	ENSG00000121964				88	0	0	50	12	19.3548
MBD5	0	genome.wustl.edu	37	2	149247283	149247283	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	149247283	149247283	C	T	SNP	MBD5	ENST00000407073	human	ensembl	74_37	+1	known	missense	c.3383	p.A1128V	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP_dom	-	no_errors	MBD5	HGNC	ENSG00000204406				100	0	0	76	22	22.449
NEB	0	genome.wustl.edu	37	2	152411514	152411514	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	152411514	152411514	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.19359	p.T6453	0.827	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				64	0	0	60	18	23.0769
NEB	0	genome.wustl.edu	37	2	152580788	152580788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	152580788	152580788	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.598	p.A200T	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				39	0	0	17	6	26.087
TANC1	0	genome.wustl.edu	37	2	160053147	160053147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	160053147	160053147	G	A	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	missense	c.3008	p.C1003Y	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				96	0	0	81	21	20.5882
FIGN	0	genome.wustl.edu	37	2	164466372	164466372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	164466372	164466372	G	A	SNP	FIGN	ENST00000333129	human	ensembl	74_37	-1	known	missense	c.1970	p.A657V	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263				93	0	0	60	22	26.8293
ABCB11	0	genome.wustl.edu	37	2	169851961	169851961	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	169851961	169851961	T	C	SNP	ABCB11	ENST00000263817	human	ensembl	74_37	-1	known	missense	c.509	p.Q170R	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB11	HGNC	ENSG00000073734				38	0	0	31	6	16.2162
LRP2	0	genome.wustl.edu	37	2	170031820	170031820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	170031820	170031820	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.10651	p.R3551C	0.998	superfamily_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				96	0	0	63	26	29.2135
LRP2	0	genome.wustl.edu	37	2	170088299	170088299	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	170088299	170088299	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	nonsense	c.5152	p.Q1718*	0.374	superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				70	0	0	50	20	28.5714
BBS5	0	genome.wustl.edu	37	2	170356084	170356084	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	170356084	170356084	A	G	SNP	BBS5	ENST00000554017	human	ensembl	74_37	+1	known	missense	c.770	p.Y257C	1.000	pfam_BBL5	pfam_BBL5,pfam_Kelch_1,smart_DM16_repeat,smart_Kelch_1	-	no_errors	BBS5	HGNC	ENSG00000163093				69	0	0	54	20	27.027
HOXD3	0	genome.wustl.edu	37	2	177036706	177036706	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	177036706	177036706	G	A	SNP	HOXD3	ENST00000249440	human	ensembl	74_37	+1	known	missense	c.1003	p.E335K	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD3	HGNC	ENSG00000128652				29	0	0	32	8	20
TTC30A	0	genome.wustl.edu	37	2	178482854	178482854	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	178482854	178482854	G	A	SNP	TTC30A	ENST00000355689	human	ensembl	74_37	-1	known	silent	c.576	p.Y192	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30A	HGNC	ENSG00000197557				116	0	0	100	18	15.2542
TTC30A	0	genome.wustl.edu	37	2	178483410	178483410	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	178483410	178483410	G	A	SNP	TTC30A	ENST00000355689	human	ensembl	74_37	-1	known	missense	c.20	p.A7V	0.029	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30A	HGNC	ENSG00000197557				23	0	0	19	10	34.4828
OSBPL6	0	genome.wustl.edu	37	2	179209055	179209055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	179209055	179209055	C	T	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	missense	c.967	p.R323W	1.000	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				79	0	0	52	20	27.7778
TTN	0	genome.wustl.edu	37	2	179403387	179403387	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	179403387	179403387	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.91465	p.Q30489K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				219	0	0	157	20	11.2994
TTN	0	genome.wustl.edu	37	2	179421666	179421666	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	179421666	179421666	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.80511	p.Q26837	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				52	0	0	36	11	23.4043
TTN	0	genome.wustl.edu	37	2	179444798	179444798	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	179444798	179444798	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.59512	p.T19838A	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				163	0	0	90	36	28.5714
TTN	0	genome.wustl.edu	37	2	179457718	179457718	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	179457718	179457718	T	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.51424	p.S17142C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				186	0	0	162	42	20.5882
TTN	0	genome.wustl.edu	37	2	179466856	179466856	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	179466856	179466856	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.47438	p.D15813A	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				73	0	0	47	24	33.8028
TTN	0	genome.wustl.edu	37	2	179474470	179474470	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	179474470	179474470	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.43976	p.A14659V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				285	0	0	198	70	26.1194
TTN	0	genome.wustl.edu	37	2	179584925	179584925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	179584925	179584925	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.19712	p.R6571Q	0.581	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				81	0	0	51	15	22.7273
SESTD1	0	genome.wustl.edu	37	2	179989141	179989141	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	179989141	179989141	T	C	SNP	SESTD1	ENST00000428443	human	ensembl	74_37	-1	known	missense	c.1117	p.R373G	1.000	NULL	superfamily_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	SESTD1	HGNC	ENSG00000187231				74	0	0	56	16	22.2222
ZNF385B	0	genome.wustl.edu	37	2	180308114	180308114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	180308114	180308114	C	T	SNP	ZNF385B	ENST00000410066	human	ensembl	74_37	-1	known	missense	c.1279	p.V427M	0.887	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385B	HGNC	ENSG00000144331				29	0	0	9	6	40
FRZB	0	genome.wustl.edu	37	2	183730895	183730895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	183730895	183730895	G	A	SNP	FRZB	ENST00000295113	human	ensembl	74_37	-1	known	missense	c.386	p.S129L	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	FRZB	HGNC	ENSG00000162998				47	0	0	40	12	23.0769
COL5A2	0	genome.wustl.edu	37	2	189917735	189917735	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	189917735	189917735	C	T	SNP	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	missense	c.2563	p.G855R	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262				52	0	0	48	9	15.7895
AOX1	0	genome.wustl.edu	37	2	201485877	201485877	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	201485877	201485877	G	T	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	missense	c.1909	p.G637C	0.986	pfam_Ald_Oxase/Xan_DH_a/b,superfamily_Ald_Oxase/Xan_DH_a/b,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356				111	0	0	80	36	31.0345
FZD7	0	genome.wustl.edu	37	2	202900038	202900038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	202900038	202900038	G	A	SNP	FZD7	ENST00000286201	human	ensembl	74_37	+1	known	missense	c.668	p.R223H	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD7	HGNC	ENSG00000155760				64	0	0	44	21	32.3077
ZDBF2	0	genome.wustl.edu	37	2	207169731	207169731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	207169731	207169731	G	A	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.479	p.R160K	0.001	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				30	0	0	35	4	10.2564
RPE	0	genome.wustl.edu	37	2	210874443	210874443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	210874443	210874443	G	A	SNP	RPE	ENST00000359429	human	ensembl	74_37	+1	known	missense	c.185	p.G62D	1.000	pfam_Ribul_P_3_epim-like,superfamily_RibuloseP-bd_barrel,tigrfam_Ribul_P_3_epim-like	pfam_Ribul_P_3_epim-like,superfamily_RibuloseP-bd_barrel,tigrfam_Ribul_P_3_epim-like	-	no_errors	RPE	HGNC	ENSG00000197713				261	0	0	170	65	27.6596
ABCA12	0	genome.wustl.edu	37	2	215862460	215862460	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	215862460	215862460	C	A	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.3253	p.V1085L	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				86	0	0	38	11	22.449
IGFBP2	0	genome.wustl.edu	37	2	217528750	217528750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	217528750	217528750	C	T	SNP	IGFBP2	ENST00000233809	human	ensembl	74_37	+1	known	missense	c.901	p.R301W	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-2	-	no_errors	IGFBP2	HGNC	ENSG00000115457				36	0	0	30	17	36.1702
ZNF142	0	genome.wustl.edu	37	2	219508810	219508810	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	219508810	219508810	T	C	SNP	ZNF142	ENST00000411696	human	ensembl	74_37	-1	known	missense	c.2429	p.Q810R	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568				347	0	0	270	44	14.0127
BCS1L	0	genome.wustl.edu	37	2	219528151	219528151	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	219528151	219528151	A	G	SNP	BCS1L	ENST00000465706	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BCS1L	HGNC	ENSG00000074582				45	0	0	34	18	34.6154
DNAJB2	0	genome.wustl.edu	37	2	220150745	220150745	+	RNA	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	220150745	220150745	T	C	SNP	DNAJB2	ENST00000470530	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.770	-	-	-	no_errors	DNAJB2	HGNC	ENSG00000135924				42	0	0	35	16	31.3725
SPEG	0	genome.wustl.edu	37	2	220334065	220334065	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	220334065	220334065	C	T	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.3679	p.R1227C	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				51	0	0	36	11	23.4043
GMPPA	0	genome.wustl.edu	37	2	220366242	220366242	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	220366242	220366242	T	C	SNP	GMPPA	ENST00000313597	human	ensembl	74_37	+1	known	silent	c.183	p.P61	0.805	pfam_NTP_transferase	pfam_NTP_transferase	-	no_errors	GMPPA	HGNC	ENSG00000144591				274	1	0.363636	144	69	32.3944
DOCK10	0	genome.wustl.edu	37	2	225727389	225727389	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	225727389	225727389	C	A	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.1677	p.W559C	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905				24	0	0	22	5	18.5185
ALPI	0	genome.wustl.edu	37	2	233323702	233323702	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	233323702	233323702	C	T	SNP	ALPI	ENST00000295463	human	ensembl	74_37	+1	known	missense	c.1433	p.A478V	1.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPI	HGNC	ENSG00000163295				11	0	0	8	4	33.3333
NEU2	0	genome.wustl.edu	37	2	233899563	233899563	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	233899563	233899563	G	A	SNP	NEU2	ENST00000233840	human	ensembl	74_37	+1	known	silent	c.939	p.P313	0.000	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU2	HGNC	ENSG00000115488				152	1	0.653595	129	39	23.2143
AGAP1	0	genome.wustl.edu	37	2	236708164	236708164	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	236708164	236708164	A	G	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.955	p.T319A	1.000	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				102	0	0	65	21	24.4186
COL6A3	0	genome.wustl.edu	37	2	238277261	238277261	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	238277261	238277261	G	A	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	silent	c.4845	p.P1615	0.823	NULL	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				105	0	0	76	30	28.3019
ESPNL	0	genome.wustl.edu	37	2	239039978	239039978	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	239039978	239039978	C	A	SNP	ESPNL	ENST00000343063	human	ensembl	74_37	+1	known	silent	c.2623	p.R875	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ESPNL	HGNC	ENSG00000144488				19	0	0	12	7	36.8421
KLHL30	0	genome.wustl.edu	37	2	239050088	239050088	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	239050088	239050088	C	T	SNP	KLHL30	ENST00000409223	human	ensembl	74_37	+1	known	silent	c.693	p.C231	0.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL30	HGNC	ENSG00000168427				9	0	0	13	5	27.7778
HDAC4	0	genome.wustl.edu	37	2	239975238	239975238	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	239975238	239975238	C	T	SNP	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	missense	c.3133	p.A1045T	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024				41	0	0	61	4	6.15385
GAL3ST2	0	genome.wustl.edu	37	2	242741294	242741294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	242741294	242741294	G	A	SNP	GAL3ST2	ENST00000192314	human	ensembl	74_37	+1	known	missense	c.218	p.R73H	1.000	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST2	HGNC	ENSG00000154252				91	0	0	73	21	22.3404
LOC101930257	0	genome.wustl.edu	37	2	243056854	243056854	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	243056854	243056854	A	G	SNP	LOC101930257	ENST00000431796	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC093642.5	Clone_based_vega_gene	ENSG00000220804				27	0	0	27	5	15.625
ITSN2	0	genome.wustl.edu	37	2	24509160	24509160	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	24509160	24509160	A	C	SNP	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	missense	c.1784	p.L595R	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				29	0	0	25	5	16.6667
NCOA1	0	genome.wustl.edu	37	2	24927990	24927990	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	24927990	24927990	A	G	SNP	NCOA1	ENST00000348332	human	ensembl	74_37	+1	known	missense	c.985	p.R329G	1.000	superfamily_PAS,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA1	HGNC	ENSG00000084676				119	0	0	78	21	21.2121
SNX17	0	genome.wustl.edu	37	2	27598992	27598992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	27598992	27598992	G	A	SNP	SNX17	ENST00000233575	human	ensembl	74_37	+1	known	missense	c.1124	p.C375Y	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234				164	0	0	116	36	23.6842
ZNF513	0	genome.wustl.edu	37	2	27600656	27600656	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	27600656	27600656	C	T	SNP	ZNF513	ENST00000323703	human	ensembl	74_37	-1	known	missense	c.1382	p.R461H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF513	HGNC	ENSG00000163795				280	1	0.355872	202	74	26.8116
SLC4A1AP	0	genome.wustl.edu	37	2	27898476	27898476	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	27898476	27898476	A	G	SNP	SLC4A1AP	ENST00000326019	human	ensembl	74_37	+1	known	missense	c.1423	p.T475A	1.000	NULL	pfam_FHA_dom,pfam_dsRNA-bd_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLC4A1AP	HGNC	ENSG00000163798				85	0	0	49	24	32.8767
LCLAT1	0	genome.wustl.edu	37	2	30748598	30748598	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	30748598	30748598	G	T	SNP	LCLAT1	ENST00000309052	human	ensembl	74_37	+1	known	missense	c.256	p.A86S	1.000	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	LCLAT1	HGNC	ENSG00000172954				113	1	0.877193	75	29	27.8846
HEATR5B	0	genome.wustl.edu	37	2	37287865	37287865	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	37287865	37287865	C	T	SNP	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	missense	c.1708	p.V570I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				101	0	0	64	23	26.4368
SLC3A1	0	genome.wustl.edu	37	2	44539759	44539759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	44539759	44539759	G	A	SNP	SLC3A1	ENST00000260649	human	ensembl	74_37	+1	known	missense	c.1367	p.R456H	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A1	HGNC	ENSG00000138079				132	0	0	83	21	20.1923
MSH6	0	genome.wustl.edu	37	2	48026311	48026311	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	48026311	48026311	T	C	SNP	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	missense	c.1189	p.Y397H	0.990	superfamily_DNA_mismatch_repair_MutS_N,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				110	0	0	63	26	29.2135
FOXN2	0	genome.wustl.edu	37	2	48602513	48602513	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	48602513	48602513	A	G	SNP	FOXN2	ENST00000340553	human	ensembl	74_37	+1	known	silent	c.1227	p.G409	0.999	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN2	HGNC	ENSG00000170802				36	0	0	12	9	42.8571
TSPYL6	0	genome.wustl.edu	37	2	54483007	54483007	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	54483007	54483007	G	A	SNP	TSPYL6	ENST00000317802	human	ensembl	74_37	-1	known	silent	c.282	p.P94	0.004	NULL	pfam_NAP_family	-	no_errors	TSPYL6	HGNC	ENSG00000178021				80	0	0	59	22	27.1605
SOX11	0	genome.wustl.edu	37	2	5833531	5833531	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	5833531	5833531	C	T	SNP	SOX11	ENST00000322002	human	ensembl	74_37	+1	known	silent	c.678	p.D226	0.997	pirsf_SOX-12/11/4a	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	-	no_errors	SOX11	HGNC	ENSG00000176887				13	0	0	11	11	50
PUS10	0	genome.wustl.edu	37	2	61175320	61175320	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	61175320	61175320	C	T	SNP	PUS10	ENST00000316752	human	ensembl	74_37	-1	known	missense	c.1309	p.D437N	1.000	superfamily_PsdUridine_synth_cat_dom	superfamily_PsdUridine_synth_cat_dom	-	no_errors	PUS10	HGNC	ENSG00000162927				139	0	0	103	35	25.3623
UGP2	0	genome.wustl.edu	37	2	64113007	64113007	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	64113007	64113007	G	C	SNP	UGP2	ENST00000337130	human	ensembl	74_37	+1	known	missense	c.860	p.R287P	1.000	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	-	no_errors	UGP2	HGNC	ENSG00000169764				64	0	0	45	14	23.7288
ACTR2	0	genome.wustl.edu	37	2	65473672	65473672	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	65473672	65473672	T	C	SNP	ACTR2	ENST00000377982	human	ensembl	74_37	+1	known	silent	c.189	p.G63	0.958	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTR2	HGNC	ENSG00000138071				63	0	0	48	23	32.3944
TMEM18	0	genome.wustl.edu	37	2	675525	675525	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	675525	675525	G	A	SNP	TMEM18	ENST00000281017	human	ensembl	74_37	-1	known	missense	c.163	p.H55Y	0.987	NULL	NULL	-	no_errors	TMEM18	HGNC	ENSG00000151353				80	0	0	88	32	26.6667
ADD2	0	genome.wustl.edu	37	2	70923378	70923378	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	70923378	70923378	G	A	SNP	ADD2	ENST00000264436	human	ensembl	74_37	-1	known	missense	c.473	p.T158M	1.000	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340				22	0	0	16	13	44.8276
CD207	0	genome.wustl.edu	37	2	71062648	71062648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	71062648	71062648	G	A	SNP	CD207	ENST00000410009	human	ensembl	74_37	-1	known	missense	c.164	p.A55V	0.170	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CD207	HGNC	ENSG00000116031				46	0	0	44	4	8.33333
TEX261	0	genome.wustl.edu	37	2	71219073	71219073	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	71219073	71219073	C	T	SNP	TEX261	ENST00000272438	human	ensembl	74_37	-1	known	missense	c.191	p.R64H	0.999	pfam_Transmembrane_adaptor_Erv26	pfam_Transmembrane_adaptor_Erv26	-	no_errors	TEX261	HGNC	ENSG00000144043				48	0	0	40	9	18.3673
TET3	0	genome.wustl.edu	37	2	74273650	74273650	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	74273650	74273650	C	A	SNP	TET3	ENST00000409262	human	ensembl	74_37	+1	known	silent	c.201	p.A67	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605				49	0	0	44	12	21.4286
LRRTM4	0	genome.wustl.edu	37	2	77745529	77745529	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	77745529	77745529	T	C	SNP	LRRTM4	ENST00000409911	human	ensembl	74_37	-1	known	missense	c.1469	p.K490R	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204				34	0	0	30	5	14.2857
CTNNA2	0	genome.wustl.edu	37	2	80646606	80646606	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	80646606	80646606	C	T	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	silent	c.1272	p.D424	0.998	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				82	0	0	58	16	21.6216
TCF7L1	0	genome.wustl.edu	37	2	85361486	85361486	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	85361486	85361486	G	A	SNP	TCF7L1	ENST00000282111	human	ensembl	74_37	+1	known	silent	c.354	p.P118	0.053	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L1	HGNC	ENSG00000152284				22	0	0	9	5	35.7143
ELMOD3	0	genome.wustl.edu	37	2	85617385	85617385	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	85617385	85617385	A	G	SNP	ELMOD3	ENST00000315658	human	ensembl	74_37	+1	known	missense	c.940	p.K314E	1.000	NULL	pfam_Engulfment_cell_motility_ELMO	-	no_errors	ELMOD3	HGNC	ENSG00000115459				102	0	0	65	26	28.5714
GGCX	0	genome.wustl.edu	37	2	85781553	85781553	+	RNA	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	85781553	85781553	C	A	SNP	GGCX	ENST00000473665	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.325	-	-	-	no_errors	GGCX	HGNC	ENSG00000115486				33	0	0	11	4	26.6667
ST3GAL5	0	genome.wustl.edu	37	2	86073608	86073608	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	86073608	86073608	G	A	SNP	ST3GAL5	ENST00000377332	human	ensembl	74_37	-1	known	silent	c.741	p.G247	0.196	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL5	HGNC	ENSG00000115525				69	0	0	47	6	11.3208
ADRA2B	0	genome.wustl.edu	37	2	96781615	96781615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	96781615	96781615	C	T	SNP	ADRA2B	ENST00000409345	human	ensembl	74_37	-1	known	missense	c.274	p.D92N	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2B_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA2B	HGNC	ENSG00000222040				42	0	0	24	6	20
ANKRD36	0	genome.wustl.edu	37	2	97875442	97875442	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	97875442	97875442	T	G	SNP	ANKRD36	ENST00000420699	human	ensembl	74_37	+1	known	missense	c.3290	p.L1097W	0.010	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976				37	0	0	28	5	15.1515
KIAA1211L	0	genome.wustl.edu	37	2	99439540	99439540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	99439540	99439540	G	A	SNP	KIAA1211L	ENST00000397899	human	ensembl	74_37	-1	known	missense	c.1196	p.A399V	0.000	NULL	NULL	-	no_errors	KIAA1211L	HGNC	ENSG00000196872				14	0	0	13	5	27.7778
KIAA1211L	0	genome.wustl.edu	37	2	99448877	99448877	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	99448877	99448877	G	A	SNP	KIAA1211L	ENST00000397899	human	ensembl	74_37	-1	known	silent	c.474	p.D158	0.914	NULL	NULL	-	no_errors	KIAA1211L	HGNC	ENSG00000196872				88	0	0	92	31	25.2033
LYG2	0	genome.wustl.edu	37	2	99860495	99860495	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	99860495	99860495	A	T	SNP	LYG2	ENST00000333017	human	ensembl	74_37	-1	known	missense	c.487	p.F163I	1.000	pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG2	HGNC	ENSG00000185674				96	0	0	70	17	19.5402
SPTLC3	0	genome.wustl.edu	37	20	13074181	13074181	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	13074181	13074181	G	A	SNP	SPTLC3	ENST00000399002	human	ensembl	74_37	+1	known	silent	c.783	p.G261	0.988	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	SPTLC3	HGNC	ENSG00000172296				97	0	0	58	8	12.1212
ISM1	0	genome.wustl.edu	37	20	13279946	13279946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	13279946	13279946	C	T	SNP	ISM1	ENST00000262487	human	ensembl	74_37	+1	known	missense	c.1235	p.A412V	1.000	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230				29	0	0	34	18	34.6154
ESF1	0	genome.wustl.edu	37	20	13752052	13752052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	13752052	13752052	G	A	SNP	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	missense	c.1328	p.P443L	0.999	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048				132	0	0	89	31	25.8333
KIF16B	0	genome.wustl.edu	37	20	16493497	16493497	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	16493497	16493497	A	G	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	silent	c.420	p.D140	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				61	0	0	43	7	14
BFSP1	0	genome.wustl.edu	37	20	17479498	17479498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	17479498	17479498	C	T	SNP	BFSP1	ENST00000377873	human	ensembl	74_37	-1	known	missense	c.923	p.R308Q	0.984	NULL	pfam_IF,superfamily_Prefoldin	-	no_errors	BFSP1	HGNC	ENSG00000125864				56	0	0	35	14	28.5714
NINL	0	genome.wustl.edu	37	20	25434176	25434176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	25434176	25434176	C	T	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.4060	p.A1354T	0.846	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				108	0	0	107	7	6.14035
IDH3B	0	genome.wustl.edu	37	20	2639179	2639179	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	2639179	2639179	G	A	SNP	IDH3B	ENST00000488299	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	IDH3B	HGNC	ENSG00000101365				44	0	0	22	11	33.3333
PLAGL2	0	genome.wustl.edu	37	20	30784819	30784819	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	30784819	30784819	G	A	SNP	PLAGL2	ENST00000246229	human	ensembl	74_37	-1	known	silent	c.927	p.G309	0.830	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL2	HGNC	ENSG00000126003				193	1	0.515464	131	44	25.1429
FAM83C	0	genome.wustl.edu	37	20	33876762	33876762	+	Splice_Site	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	33876762	33876762	C	A	SNP	FAM83C	ENST00000374408	human	ensembl	74_37	-1	known	splice_site	c.514-1	e2-1	1.000	-	-	-	no_errors	FAM83C	HGNC	ENSG00000125998				103	0	0	84	29	25.6637
GDF5	0	genome.wustl.edu	37	20	34022054	34022054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	34022054	34022054	G	A	SNP	GDF5	ENST00000374369	human	ensembl	74_37	-1	known	missense	c.1159	p.R387C	1.000	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF5	HGNC	ENSG00000125965				194	0	0	155	66	29.8643
CEP250	0	genome.wustl.edu	37	20	34091729	34091729	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	34091729	34091729	G	T	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.5532	p.Q1844H	0.009	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				44	0	0	34	5	12.8205
CPNE1	0	genome.wustl.edu	37	20	34218375	34218375	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	34218375	34218375	T	C	SNP	CPNE1	ENST00000317677	human	ensembl	74_37	-1	known	missense	c.1103	p.N368S	0.988	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE1	HGNC	ENSG00000214078				129	0	0	145	9	5.84416
DLGAP4	0	genome.wustl.edu	37	20	35064647	35064647	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	35064647	35064647	G	A	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.1135	p.D379N	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				36	0	0	20	8	28.5714
VSTM2L	0	genome.wustl.edu	37	20	36560064	36560064	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	36560064	36560064	T	C	SNP	VSTM2L	ENST00000373461	human	ensembl	74_37	+1	known	missense	c.149	p.M50T	1.000	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VSTM2L	HGNC	ENSG00000132821				286	0	0	198	72	26.6667
TTI1	0	genome.wustl.edu	37	20	36631163	36631163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	36631163	36631163	G	A	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	missense	c.2519	p.P840L	1.000	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				139	1	0.714286	76	26	25.4902
SLC32A1	0	genome.wustl.edu	37	20	37356449	37356449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	37356449	37356449	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.745	p.A249T	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				66	0	0	38	14	26.9231
PANK2	0	genome.wustl.edu	37	20	3891416	3891416	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	3891416	3891416	T	G	SNP	PANK2	ENST00000316562	human	ensembl	74_37	+1	known	missense	c.1174	p.S392A	1.000	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK2	HGNC	ENSG00000125779				138	0	0	85	22	20.5607
PLCG1	0	genome.wustl.edu	37	20	39794342	39794342	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	39794342	39794342	C	T	SNP	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	missense	c.1675	p.R559C	0.968	pfam_SH2,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_Pleckstrin_homology,smart_SH2,pirsf_PLC-gamma,pfscan_SH2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_dom,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181				83	0	0	72	17	19.1011
CHD6	0	genome.wustl.edu	37	20	40113207	40113207	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	40113207	40113207	C	A	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.2042	p.R681L	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				157	0	0	99	27	21.4286
L3MBTL1	0	genome.wustl.edu	37	20	42162977	42162977	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	42162977	42162977	G	A	SNP	L3MBTL1	ENST00000418998	human	ensembl	74_37	+1	known	silent	c.1587	p.R529	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_Znf_C2HC,superfamily_SAM/pointed,smart_Mbt,pfscan_Mbt	-	no_errors	L3MBTL1	HGNC	ENSG00000185513				101	0	0	99	8	7.47664
SLC12A5	0	genome.wustl.edu	37	20	44683557	44683557	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	44683557	44683557	T	C	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	silent	c.2751	p.H917	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140				44	0	0	29	12	29.2683
SLC35C2	0	genome.wustl.edu	37	20	44985238	44985238	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	44985238	44985238	T	A	SNP	SLC35C2	ENST00000543605	human	ensembl	74_37	-1	known	missense	c.397	p.S133C	1.000	pfam_UAA	pfam_Tpt_PEP_trans_dom,pfam_UAA	-	no_errors	SLC35C2	HGNC	ENSG00000080189				40	0	0	30	14	31.8182
EYA2	0	genome.wustl.edu	37	20	45771717	45771717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	45771717	45771717	G	A	SNP	EYA2	ENST00000327619	human	ensembl	74_37	+1	known	missense	c.908	p.R303H	1.000	pfam_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA2	HGNC	ENSG00000064655				107	0	0	63	14	18.1818
MOCS3	0	genome.wustl.edu	37	20	49576097	49576097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	49576097	49576097	G	A	SNP	MOCS3	ENST00000244051	human	ensembl	74_37	+1	known	missense	c.718	p.A240T	0.999	pfam_MoeZ_MoeB,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_MoeZ_MoeB,pfam_Rhodanese-like_dom,superfamily_Molybdenum_cofac_synth_MoeB,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	MOCS3	HGNC	ENSG00000124217				144	0	0	106	36	25.3521
ATP9A	0	genome.wustl.edu	37	20	50221453	50221453	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	50221453	50221453	C	T	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	silent	c.2910	p.A970	0.788	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				49	0	0	34	10	22.7273
ATP9A	0	genome.wustl.edu	37	20	50235213	50235213	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	50235213	50235213	T	C	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	missense	c.2338	p.T780A	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				94	0	0	63	24	27.5862
ATP9A	0	genome.wustl.edu	37	20	50273655	50273655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	50273655	50273655	G	A	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	missense	c.1328	p.T443M	0.179	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				54	0	0	62	5	7.46269
ATP9A	0	genome.wustl.edu	37	20	50346470	50346470	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	50346470	50346470	C	T	SNP	ATP9A	ENST00000338821	human	ensembl	74_37	-1	known	missense	c.116	p.R39H	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9A	HGNC	ENSG00000054793				153	0	0	123	39	24.0741
ZFP64	0	genome.wustl.edu	37	20	50701513	50701513	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	50701513	50701513	C	T	SNP	ZFP64	ENST00000361387	human	ensembl	74_37	-1	known	silent	c.1521	p.A507	0.026	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				129	0	0	97	30	23.622
CYP24A1	0	genome.wustl.edu	37	20	52788146	52788146	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	52788146	52788146	T	C	SNP	CYP24A1	ENST00000216862	human	ensembl	74_37	-1	known	silent	c.513	p.E171	0.995	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP24A_mit	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186				280	0	0	196	67	25.4753
CASS4	0	genome.wustl.edu	37	20	55027023	55027023	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	55027023	55027023	C	T	SNP	CASS4	ENST00000360314	human	ensembl	74_37	+1	known	missense	c.791	p.A264V	0.000	NULL	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589				92	0	0	50	12	19.3548
CASS4	0	genome.wustl.edu	37	20	55033681	55033681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	55033681	55033681	G	A	SNP	CASS4	ENST00000360314	human	ensembl	74_37	+1	known	missense	c.2239	p.V747I	1.000	pfam_CAS_DUF3513	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589				65	0	0	47	16	25.3968
APCDD1L	0	genome.wustl.edu	37	20	57042216	57042216	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	57042216	57042216	C	T	SNP	APCDD1L	ENST00000439429	human	ensembl	74_37	-1	known	silent	c.720	p.A240	0.000	NULL	NULL	-	no_errors	APCDD1L	HGNC	ENSG00000198768				57	0	0	39	21	35
ZNF831	0	genome.wustl.edu	37	20	57766274	57766274	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	57766274	57766274	C	A	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.200	p.P67H	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				34	0	0	19	9	32.1429
ZNF831	0	genome.wustl.edu	37	20	57766659	57766659	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	57766659	57766659	G	A	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	silent	c.585	p.T195	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				115	0	0	107	37	25.6944
LAMA5	0	genome.wustl.edu	37	20	60912692	60912692	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	60912692	60912692	C	T	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	silent	c.2118	p.R706	0.797	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				37	0	0	25	9	26.4706
LOC100127888	0	genome.wustl.edu	37	20	61296587	61296587	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	61296587	61296587	G	A	SNP	LOC100127888	ENST00000433126	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-93B14.5	Clone_based_vega_gene	ENSG00000232803				19	0	0	15	5	25
OGFR	0	genome.wustl.edu	37	20	61444596	61444596	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	61444596	61444596	C	T	SNP	OGFR	ENST00000290291	human	ensembl	74_37	+1	known	silent	c.1629	p.G543	0.010	pfam_OGF_rcpt_rpt	pfam_OGF_rcpt,pfam_OGF_rcpt_rpt	-	no_errors	OGFR	HGNC	ENSG00000060491				26	0	0	36	10	21.7391
COL20A1	0	genome.wustl.edu	37	20	61943272	61943272	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	61943272	61943272	C	A	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	silent	c.1668	p.T556	0.029	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				8	0	0	11	7	38.8889
PLCB1	0	genome.wustl.edu	37	20	8782728	8782728	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	8782728	8782728	C	T	SNP	PLCB1	ENST00000378637	human	ensembl	74_37	+1	known	missense	c.3449	p.S1150L	1.000	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				87	0	0	71	29	29
BAGE2	0	genome.wustl.edu	37	21	11098712	11098712	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	11098712	11098712	C	T	SNP	BAGE2	ENST00000470054	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172				361	0	0	333	45	11.9048
ANKRD30BP2	0	genome.wustl.edu	37	21	14424160	14424160	+	RNA	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	14424160	14424160	G	T	SNP	ANKRD30BP2	ENST00000471407	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	ANKRD30BP2	HGNC	ENSG00000224309				51	0	0	56	7	11.1111
SAMSN1	0	genome.wustl.edu	37	21	15884777	15884777	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	15884777	15884777	G	T	SNP	SAMSN1	ENST00000400566	human	ensembl	74_37	-1	known	missense	c.397	p.Q133K	0.994	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307				244	0	0	129	50	27.933
NRIP1	0	genome.wustl.edu	37	21	16339835	16339835	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	16339835	16339835	T	C	SNP	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	missense	c.679	p.T227A	0.747	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				154	0	0	85	33	27.9661
MIR155HG	0	genome.wustl.edu	37	21	26946384	26946384	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	26946384	26946384	A	G	SNP	MIR155HG	ENST00000456917	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR155HG	HGNC	ENSG00000234883				27	0	0	13	9	40.9091
ADAMTS5	0	genome.wustl.edu	37	21	28338429	28338429	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	28338429	28338429	G	A	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	silent	c.282	p.G94	0.998	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				151	0	0	109	37	25.3425
KRTAP11-1	0	genome.wustl.edu	37	21	32253467	32253467	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	32253467	32253467	C	A	SNP	KRTAP11-1	ENST00000332378	human	ensembl	74_37	-1	known	missense	c.377	p.G126V	0.003	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP11-1	HGNC	ENSG00000182591				119	0	0	118	8	6.34921
IFNAR2	0	genome.wustl.edu	37	21	34619154	34619154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	34619154	34619154	C	T	SNP	IFNAR2	ENST00000342136	human	ensembl	74_37	+1	known	missense	c.353	p.T118M	0.000	superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IFNAR2	HGNC	ENSG00000159110				40	0	0	31	13	29.5455
SON	0	genome.wustl.edu	37	21	34922085	34922085	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	34922085	34922085	C	A	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	missense	c.548	p.P183H	0.300	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				120	0	0	122	10	7.57576
MORC3	0	genome.wustl.edu	37	21	37741865	37741865	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	37741865	37741865	A	G	SNP	MORC3	ENST00000400485	human	ensembl	74_37	+1	known	silent	c.2199	p.E733	1.000	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256				104	0	0	74	10	11.9048
TTC3	0	genome.wustl.edu	37	21	38538593	38538593	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	38538593	38538593	T	C	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	silent	c.4077	p.Y1359	0.375	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				146	0	0	94	33	25.9843
KCNJ6	0	genome.wustl.edu	37	21	39086633	39086633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	39086633	39086633	G	A	SNP	KCNJ6	ENST00000288309	human	ensembl	74_37	-1	known	missense	c.827	p.P276L	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542				160	0	0	106	28	20.8955
DSCAM	0	genome.wustl.edu	37	21	41414401	41414401	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	41414401	41414401	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	silent	c.5583	p.S1861	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				130	1	0.763359	103	33	24.2647
DSCAM	0	genome.wustl.edu	37	21	41710234	41710234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	41710234	41710234	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.1577	p.R526H	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				84	0	0	57	22	27.8481
CBS	0	genome.wustl.edu	37	21	44474066	44474066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	44474066	44474066	C	T	SNP	CBS	ENST00000398168	human	ensembl	74_37	-1	known	missense	c.1622	p.R541Q	0.980	tigrfam_Cysta_beta_synth	pfam_Trp_syn_b_sub_like_PLP_eny_SF,pfam_CBS_dom,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,smart_CBS_dom,tigrfam_Cysta_beta_synth	-	no_errors	CBS	HGNC	ENSG00000160200				76	0	0	60	25	29.4118
KRTAP10-4	0	genome.wustl.edu	37	21	45994422	45994422	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	45994422	45994422	T	C	SNP	KRTAP10-4	ENST00000400374	human	ensembl	74_37	+1	known	missense	c.787	p.S263P	0.003	NULL	NULL	-	no_errors	KRTAP10-4	HGNC	ENSG00000215454				261	0	0	193	76	28.2528
ADARB1	0	genome.wustl.edu	37	21	46604951	46604951	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	46604951	46604951	G	A	SNP	ADARB1	ENST00000360697	human	ensembl	74_37	+1	known	missense	c.1630	p.G544R	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,superfamily_Cytokine_IL1-like,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381				181	0	0	150	48	24.2424
POFUT2	0	genome.wustl.edu	37	21	46687474	46687474	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	46687474	46687474	G	A	SNP	POFUT2	ENST00000331343	human	ensembl	74_37	-1	known	silent	c.1167	p.S389	0.000	NULL	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866				171	0	0	171	55	24.3363
LSS	0	genome.wustl.edu	37	21	47635156	47635156	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	47635156	47635156	G	A	SNP	LSS	ENST00000356396	human	ensembl	74_37	-1	known	nonsense	c.949	p.Q317*	0.001	superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase,tigrfam_Squalene_cyclase	-	no_errors	LSS	HGNC	ENSG00000160285				41	0	0	41	10	19.6078
PCNT	0	genome.wustl.edu	37	21	47771404	47771404	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	47771404	47771404	G	A	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.1406	p.R469H	0.002	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				112	0	0	60	24	28.5714
DIP2A	0	genome.wustl.edu	37	21	47966860	47966860	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	47966860	47966860	C	T	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	silent	c.2430	p.D810	0.202	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305				33	0	0	31	11	26.1905
CLTCL1	0	genome.wustl.edu	37	22	19175559	19175559	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	19175559	19175559	C	A	SNP	CLTCL1	ENST00000263200	human	ensembl	74_37	-1	known	missense	c.4368	p.Q1456H	1.000	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371				250	1	0.398406	186	57	23.4568
ARVCF	0	genome.wustl.edu	37	22	19969175	19969175	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	19969175	19969175	C	T	SNP	ARVCF	ENST00000263207	human	ensembl	74_37	-1	known	missense	c.455	p.G152D	0.817	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889				98	0	0	96	36	27.2727
ZDHHC8	0	genome.wustl.edu	37	22	20130522	20130522	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	20130522	20130522	C	G	SNP	ZDHHC8	ENST00000405930	human	ensembl	74_37	+1	known	missense	c.1369	p.P457A	0.997	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904				60	0	0	58	20	25.641
KLHL22	0	genome.wustl.edu	37	22	20819312	20819312	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	20819312	20819312	G	A	SNP	KLHL22	ENST00000328879	human	ensembl	74_37	-1	known	silent	c.945	p.S315	0.348	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL22	HGNC	ENSG00000099910				158	0	0	125	33	20.8861
KLHL22	0	genome.wustl.edu	37	22	20838317	20838317	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	20838317	20838317	C	T	SNP	KLHL22	ENST00000470335	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	KLHL22	HGNC	ENSG00000099910				74	0	0	50	14	21.875
AIFM3	0	genome.wustl.edu	37	22	21331366	21331366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	21331366	21331366	G	A	SNP	AIFM3	ENST00000399167	human	ensembl	74_37	+1	known	missense	c.1264	p.V422I	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2	-	no_errors	AIFM3	HGNC	ENSG00000183773				81	0	0	53	12	18.4615
BMS1P20	0	genome.wustl.edu	37	22	22664606	22664606	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	22664606	22664606	A	G	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				31	0	0	16	3	15.7895
CABIN1	0	genome.wustl.edu	37	22	24487673	24487673	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	24487673	24487673	A	C	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	missense	c.3662	p.Q1221P	1.000	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				137	0	0	100	46	31.5068
UPB1	0	genome.wustl.edu	37	22	24916395	24916395	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	24916395	24916395	G	T	SNP	UPB1	ENST00000326010	human	ensembl	74_37	+1	known	missense	c.832	p.A278S	1.000	superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	UPB1	HGNC	ENSG00000100024				52	0	0	26	9	25.7143
TPST2	0	genome.wustl.edu	37	22	26937268	26937268	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	26937268	26937268	C	T	SNP	TPST2	ENST00000338754	human	ensembl	74_37	-1	known	missense	c.329	p.R110H	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	TPST2	HGNC	ENSG00000128294				66	0	0	43	17	28.3333
MN1	0	genome.wustl.edu	37	22	28196314	28196314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	28196314	28196314	C	T	SNP	MN1	ENST00000302326	human	ensembl	74_37	-1	known	missense	c.218	p.R73H	0.999	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184				60	0	0	59	13	18.0556
ASCC2	0	genome.wustl.edu	37	22	30221642	30221642	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	30221642	30221642	A	C	SNP	ASCC2	ENST00000307790	human	ensembl	74_37	-1	known	missense	c.209	p.L70R	1.000	NULL	pfam_CUE,superfamily_UBA-like,smart_CUE,pfscan_CUE	-	no_errors	ASCC2	HGNC	ENSG00000100325				153	0	0	98	37	27.4074
SF3A1	0	genome.wustl.edu	37	22	30734814	30734814	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	30734814	30734814	C	T	SNP	SF3A1	ENST00000215793	human	ensembl	74_37	-1	known	silent	c.1707	p.S569	0.007	NULL	pfam_PRP21-like,pfam_Surp,pfam_Ubiquitin_dom,superfamily_Surp,smart_Surp,smart_Ubiquitin_dom,pfscan_Surp,pfscan_Ubiquitin_supergroup	-	no_errors	SF3A1	HGNC	ENSG00000099995				154	1	0.645161	127	46	26.5896
PATZ1	0	genome.wustl.edu	37	22	31741335	31741335	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	31741335	31741335	G	A	SNP	PATZ1	ENST00000266269	human	ensembl	74_37	-1	known	missense	c.254	p.A85V	0.068	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	PATZ1	HGNC	ENSG00000100105				65	0	0	51	25	32.8947
MYH9	0	genome.wustl.edu	37	22	36684430	36684430	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	36684430	36684430	G	A	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	silent	c.4800	p.D1600	0.568	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				131	1	0.757576	85	35	29.1667
TEX33	0	genome.wustl.edu	37	22	37395938	37395938	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	37395938	37395938	A	G	SNP	TEX33	ENST00000381821	human	ensembl	74_37	-1	known	missense	c.577	p.S193P	0.016	NULL	NULL	-	no_errors	TEX33	HGNC	ENSG00000185264				87	0	0	67	24	26.3736
TMPRSS6	0	genome.wustl.edu	37	22	37482378	37482378	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	37482378	37482378	G	A	SNP	TMPRSS6	ENST00000381792	human	ensembl	74_37	-1	known	silent	c.918	p.G306	0.723	pirsf_Pept_S1A_matriptase-2,superfamily_CUB_dom	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS6	HGNC	ENSG00000187045				43	0	0	19	10	34.4828
C1QTNF6	0	genome.wustl.edu	37	22	37581312	37581312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	37581312	37581312	G	A	SNP	C1QTNF6	ENST00000337843	human	ensembl	74_37	-1	known	missense	c.235	p.R79C	0.003	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF6	HGNC	ENSG00000133466				55	0	0	46	25	35.2113
MICALL1	0	genome.wustl.edu	37	22	38318086	38318086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	38318086	38318086	G	A	SNP	MICALL1	ENST00000215957	human	ensembl	74_37	+1	known	missense	c.677	p.R226Q	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL1	HGNC	ENSG00000100139				87	0	0	57	22	27.8481
KCNJ4	0	genome.wustl.edu	37	22	38824079	38824079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	38824079	38824079	C	T	SNP	KCNJ4	ENST00000303592	human	ensembl	74_37	-1	known	missense	c.59	p.R20H	1.000	pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.3	-	no_errors	KCNJ4	HGNC	ENSG00000168135				475	0	0	313	111	26.1792
APOBEC3B	0	genome.wustl.edu	37	22	39382072	39382072	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	39382072	39382072	C	A	SNP	APOBEC3B	ENST00000333467	human	ensembl	74_37	+1	known	missense	c.430	p.R144S	0.001	pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3B	HGNC	ENSG00000179750				149	0	0	107	40	27.2109
APOBEC3D	0	genome.wustl.edu	37	22	39418983	39418983	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	39418983	39418983	G	A	SNP	APOBEC3D	ENST00000216099	human	ensembl	74_37	+1	known	silent	c.174	p.P58	0.490	pfam_APOBEC_N	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3D	HGNC	ENSG00000243811				124	0	0	66	25	27.4725
TAB1	0	genome.wustl.edu	37	22	39826200	39826200	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	39826200	39826200	C	T	SNP	TAB1	ENST00000216160	human	ensembl	74_37	+1	known	silent	c.1488	p.G496	0.980	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	TAB1	HGNC	ENSG00000100324				138	0	0	91	19	17.2727
EP300	0	genome.wustl.edu	37	22	41543950	41543950	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	41543950	41543950	G	A	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	silent	c.2241	p.P747	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				104	0	0	58	22	27.5
TNFRSF13C	0	genome.wustl.edu	37	22	42321471	42321471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	42321471	42321471	G	A	SNP	TNFRSF13C	ENST00000291232	human	ensembl	74_37	-1	known	missense	c.455	p.P152L	0.337	NULL	pfam_TNFR_13C_TALL-1-bd,prints_TNFR_13C	-	no_errors	TNFRSF13C	HGNC	ENSG00000159958				95	0	0	64	20	23.8095
TTLL12	0	genome.wustl.edu	37	22	43570381	43570381	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	43570381	43570381	G	A	SNP	TTLL12	ENST00000216129	human	ensembl	74_37	-1	known	silent	c.1063	p.L355	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL12	HGNC	ENSG00000100304				93	0	0	69	18	20.6897
SCUBE1	0	genome.wustl.edu	37	22	43623412	43623412	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	43623412	43623412	C	A	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	missense	c.1175	p.R392M	0.985	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				28	0	0	17	13	43.3333
SMC1B	0	genome.wustl.edu	37	22	45750990	45750990	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	45750990	45750990	T	C	SNP	SMC1B	ENST00000357450	human	ensembl	74_37	-1	known	silent	c.2967	p.L989	0.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase,superfamily_t-SNARE	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_t-SNARE,smart_SMC_hinge	-	no_errors	SMC1B	HGNC	ENSG00000077935				156	0	0	78	31	28.4404
TBC1D22A	0	genome.wustl.edu	37	22	47189608	47189608	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	47189608	47189608	G	A	SNP	TBC1D22A	ENST00000337137	human	ensembl	74_37	+1	known	silent	c.330	p.G110	0.006	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22A	HGNC	ENSG00000054611				43	0	0	31	14	31.1111
MAPK11	0	genome.wustl.edu	37	22	50705416	50705416	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	50705416	50705416	C	T	SNP	MAPK11	ENST00000330651	human	ensembl	74_37	-1	known	missense	c.557	p.R186H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_p38,prints_MAPK_JNK	-	no_errors	MAPK11	HGNC	ENSG00000185386				78	0	0	62	13	17.3333
SBF1	0	genome.wustl.edu	37	22	50893694	50893694	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	50893694	50893694	A	G	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.4513	p.F1505L	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				53	0	0	42	18	30
SHANK3	0	genome.wustl.edu	37	22	51117092	51117092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	51117092	51117092	A	G	SNP	SHANK3	ENST00000262795	human	ensembl	74_37	+1	known	missense	c.419	p.D140G	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_SAM_type1,pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK3	HGNC	ENSG00000251322				39	0	0	35	9	20.4545
ABI3BP	0	genome.wustl.edu	37	3	100617729	100617729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	100617729	100617729	C	T	SNP	ABI3BP	ENST00000284322	human	ensembl	74_37	-1	known	missense	c.359	p.R120H	0.260	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175				185	0	0	122	38	23.75
DZIP3	0	genome.wustl.edu	37	3	108380774	108380774	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	108380774	108380774	G	A	SNP	DZIP3	ENST00000361582	human	ensembl	74_37	+1	known	silent	c.2250	p.R750	0.993	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DZIP3	HGNC	ENSG00000198919				40	0	0	28	11	28.2051
BTLA	0	genome.wustl.edu	37	3	112198429	112198429	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	112198429	112198429	C	T	SNP	BTLA	ENST00000334529	human	ensembl	74_37	-1	known	silent	c.276	p.E92	0.000	smart_Ig_sub,pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	BTLA	HGNC	ENSG00000186265				159	0	0	80	25	23.8095
SIDT1	0	genome.wustl.edu	37	3	113286534	113286534	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	113286534	113286534	C	A	SNP	SIDT1	ENST00000393830	human	ensembl	74_37	+1	known	silent	c.492	p.T164	1.000	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858				174	0	0	137	37	21.2644
ZBTB20	0	genome.wustl.edu	37	3	114057923	114057923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	114057923	114057923	C	T	SNP	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	missense	c.2155	p.V719I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				95	0	0	88	22	20
ZBTB20	0	genome.wustl.edu	37	3	114069414	114069414	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	114069414	114069414	C	T	SNP	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	missense	c.1511	p.G504D	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				105	0	0	59	23	28.0488
ZBTB20	0	genome.wustl.edu	37	3	114070435	114070435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	114070435	114070435	G	A	SNP	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	missense	c.490	p.R164W	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				92	0	0	67	26	27.957
ARHGAP31	0	genome.wustl.edu	37	3	119121032	119121032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	119121032	119121032	G	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.1433	p.R478H	0.759	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				150	1	0.662252	132	41	23.6994
GPR156	0	genome.wustl.edu	37	3	119887227	119887227	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	119887227	119887227	T	C	SNP	GPR156	ENST00000315843	human	ensembl	74_37	-1	known	missense	c.1097	p.N366S	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GPR156	HGNC	ENSG00000175697				104	0	0	68	22	24.4444
NDUFB4	0	genome.wustl.edu	37	3	120320066	120320066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	120320066	120320066	C	T	SNP	NDUFB4	ENST00000184266	human	ensembl	74_37	+1	known	missense	c.289	p.P97S	0.995	pfam_NADH_UbQ_OxRdtase_NDUFB4_su	pfam_NADH_UbQ_OxRdtase_NDUFB4_su	-	no_errors	NDUFB4	HGNC	ENSG00000065518				207	0	0	177	14	7.32984
HCLS1	0	genome.wustl.edu	37	3	121356016	121356016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	121356016	121356016	G	A	SNP	HCLS1	ENST00000314583	human	ensembl	74_37	-1	known	missense	c.542	p.T181M	1.000	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	HCLS1	HGNC	ENSG00000180353				107	0	0	79	32	28.8288
ADCY5	0	genome.wustl.edu	37	3	123046525	123046525	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	123046525	123046525	G	A	SNP	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	silent	c.1887	p.N629	0.941	pfam_A/G_cyclase,superfamily_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				45	0	0	52	20	27.7778
ADCY5	0	genome.wustl.edu	37	3	123049848	123049848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	123049848	123049848	G	A	SNP	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	missense	c.1534	p.R512C	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				41	0	0	35	15	30
KALRN	0	genome.wustl.edu	37	3	124351480	124351480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	124351480	124351480	G	A	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.5390	p.R1797Q	1.000	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				184	0	0	124	32	20.5128
KALRN	0	genome.wustl.edu	37	3	124436192	124436192	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	124436192	124436192	A	G	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.8375	p.Q2792R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				89	0	0	73	19	20.6522
ALG1L	0	genome.wustl.edu	37	3	125648342	125648342	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	125648342	125648342	C	T	SNP	ALG1L	ENST00000340333	human	ensembl	74_37	-1	known	silent	c.417	p.S139	0.033	NULL	NULL	-	no_errors	ALG1L	HGNC	ENSG00000189366				81	0	0	43	18	29.5082
MKRN2	0	genome.wustl.edu	37	3	12610389	12610389	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	12610389	12610389	T	C	SNP	MKRN2	ENST00000170447	human	ensembl	74_37	+1	known	silent	c.42	p.G14	0.849	smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN2	HGNC	ENSG00000075975				135	0	0	73	20	21.5054
ZXDC	0	genome.wustl.edu	37	3	126194497	126194497	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	126194497	126194497	T	A	SNP	ZXDC	ENST00000389709	human	ensembl	74_37	-1	known	missense	c.212	p.D71V	0.008	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDC	HGNC	ENSG00000070476				14	0	0	12	10	45.4545
CHST13	0	genome.wustl.edu	37	3	126261102	126261102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	126261102	126261102	G	A	SNP	CHST13	ENST00000319340	human	ensembl	74_37	+1	known	missense	c.707	p.R236H	0.926	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST13	HGNC	ENSG00000180767				9	0	0	17	3	15
PLXNA1	0	genome.wustl.edu	37	3	126724067	126724067	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	126724067	126724067	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	silent	c.1878	p.A626	0.881	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				26	0	0	17	5	22.7273
PODXL2	0	genome.wustl.edu	37	3	127379825	127379825	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	127379825	127379825	C	T	SNP	PODXL2	ENST00000342480	human	ensembl	74_37	+1	known	silent	c.954	p.A318	0.004	NULL	pfam_CD34/Podocalyxin	-	no_errors	PODXL2	HGNC	ENSG00000114631				104	0	0	98	19	16.2393
PLXND1	0	genome.wustl.edu	37	3	129284805	129284805	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	129284805	129284805	A	G	SNP	PLXND1	ENST00000324093	human	ensembl	74_37	-1	known	missense	c.4247	p.L1416P	0.865	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXND1	HGNC	ENSG00000004399				48	0	0	39	18	31.5789
COL6A6	0	genome.wustl.edu	37	3	130284257	130284257	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	130284257	130284257	A	G	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.1081	p.T361A	0.738	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				200	0	0	154	44	22.2222
C3orf36	0	genome.wustl.edu	37	3	133647227	133647227	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	133647227	133647227	A	G	SNP	C3orf36	ENST00000408895	human	ensembl	74_37	-1	known	missense	c.421	p.S141P	0.000	NULL	NULL	-	no_errors	C3orf36	HGNC	ENSG00000221972				65	0	0	39	18	31.5789
C3orf36	0	genome.wustl.edu	37	3	133647277	133647277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	133647277	133647277	C	T	SNP	C3orf36	ENST00000408895	human	ensembl	74_37	-1	known	missense	c.371	p.R124H	0.002	NULL	NULL	-	no_errors	C3orf36	HGNC	ENSG00000221972				39	0	0	44	7	13.7255
NUP210	0	genome.wustl.edu	37	3	13427823	13427823	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	13427823	13427823	T	C	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	missense	c.769	p.T257A	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				158	0	0	97	27	21.7742
MSL2	0	genome.wustl.edu	37	3	135870724	135870724	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	135870724	135870724	C	T	SNP	MSL2	ENST00000309993	human	ensembl	74_37	-1	known	silent	c.999	p.P333	1.000	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579				96	0	0	70	23	24.7312
ARMC8	0	genome.wustl.edu	37	3	137964030	137964030	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	137964030	137964030	G	A	SNP	ARMC8	ENST00000358441	human	ensembl	74_37	+1	known	missense	c.1097	p.S366N	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC8	HGNC	ENSG00000114098				79	0	0	54	14	20.5882
PRR23B	0	genome.wustl.edu	37	3	138739311	138739311	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	138739311	138739311	C	T	SNP	PRR23B	ENST00000329447	human	ensembl	74_37	-1	known	missense	c.193	p.A65T	0.000	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23B	HGNC	ENSG00000184814				35	0	0	29	7	19.4444
CLSTN2	0	genome.wustl.edu	37	3	140282845	140282845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	140282845	140282845	G	A	SNP	CLSTN2	ENST00000458420	human	ensembl	74_37	+1	known	missense	c.2525	p.C842Y	1.000	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258				216	0	0	152	64	29.6296
XRN1	0	genome.wustl.edu	37	3	142075828	142075828	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	142075828	142075828	A	G	SNP	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	missense	c.3598	p.S1200P	0.059	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				63	0	0	33	11	25
TRPC1	0	genome.wustl.edu	37	3	142443499	142443499	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	142443499	142443499	C	T	SNP	TRPC1	ENST00000476941	human	ensembl	74_37	+1	known	missense	c.98	p.A33V	1.000	prints_TRPC1_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935				61	0	0	36	10	21.7391
PBX2P1	0	genome.wustl.edu	37	3	142895905	142895905	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	142895905	142895905	G	A	SNP	PBX2P1	ENST00000560287	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171				24	0	0	15	4	21.0526
SLC6A6	0	genome.wustl.edu	37	3	14485232	14485232	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	14485232	14485232	T	C	SNP	SLC6A6	ENST00000360861	human	ensembl	74_37	+1	known	silent	c.90	p.P30	0.835	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_taurine	-	no_errors	SLC6A6	HGNC	ENSG00000131389				123	0	0	122	28	18.6667
CCDC174	0	genome.wustl.edu	37	3	14693376	14693376	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	14693376	14693376	G	T	SNP	CCDC174	ENST00000383794	human	ensembl	74_37	+1	known	silent	c.33	p.T11	0.770	NULL	NULL	-	no_errors	CCDC174	HGNC	ENSG00000154781				48	0	0	35	13	27.0833
ZIC4	0	genome.wustl.edu	37	3	147113965	147113965	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	147113965	147113965	C	T	SNP	ZIC4	ENST00000525172	human	ensembl	74_37	-1	known	missense	c.512	p.R171H	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC4	HGNC	ENSG00000174963				107	0	0	45	28	38.3562
C3orf33	0	genome.wustl.edu	37	3	155485443	155485443	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	155485443	155485443	G	A	SNP	C3orf33	ENST00000340171	human	ensembl	74_37	-1	known	missense	c.338	p.A113V	0.000	superfamily_Staphylococal_nuclease_OB-fold	superfamily_Staphylococal_nuclease_OB-fold	-	no_errors	C3orf33	HGNC	ENSG00000174928				21	0	0	12	3	20
GFM1	0	genome.wustl.edu	37	3	158363985	158363985	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	158363985	158363985	T	C	SNP	GFM1	ENST00000486715	human	ensembl	74_37	+1	known	missense	c.266	p.M89T	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827				108	0	0	72	26	26.5306
NAALADL2	0	genome.wustl.edu	37	3	174974311	174974311	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	174974311	174974311	C	T	SNP	NAALADL2	ENST00000454872	human	ensembl	74_37	+1	known	missense	c.931	p.L311F	1.000	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694				38	0	0	26	12	31.5789
PIK3CA	0	genome.wustl.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	178916876	178916876	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.263	p.R88Q	1.000	pfam_PI3K_adapt-bd_dom,smart_PI3K_adapt-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				104	0	0	82	28	25.4545
PIK3CA	0	genome.wustl.edu	37	3	178922363	178922363	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	178922363	178922363	T	C	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1132	p.C378R	1.000	pfam_PI3K_C2_dom,superfamily_C2_dom,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				74	0	0	59	23	28.0488
YEATS2-AS1	0	genome.wustl.edu	37	3	183526763	183526763	+	RNA	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	183526763	183526763	G	T	SNP	YEATS2-AS1	ENST00000425008	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	YEATS2-AS1	HGNC	ENSG00000233885				32	0	0	16	5	23.8095
PSMD2	0	genome.wustl.edu	37	3	184026652	184026652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	184026652	184026652	C	T	SNP	PSMD2	ENST00000310118	human	ensembl	74_37	+1	known	missense	c.2701	p.R901W	1.000	pirsf_26S_Psome_Rpn1	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	-	no_errors	PSMD2	HGNC	ENSG00000175166				169	0	0	119	36	23.2258
EIF4G1	0	genome.wustl.edu	37	3	184043072	184043072	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	184043072	184043072	T	C	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	missense	c.2893	p.Y965H	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				117	0	0	87	28	24.3478
KCNH8	0	genome.wustl.edu	37	3	19491653	19491653	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	19491653	19491653	C	T	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	silent	c.1431	p.Y477	1.000	superfamily_cNMP-bd-like	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				93	0	0	56	18	24.3243
MUC4	0	genome.wustl.edu	37	3	195488973	195488973	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	195488973	195488973	T	C	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.14497	p.T4833A	0.809	pfam_VWF_type-D,smart_VWF_type-D	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				14	0	0	9	7	43.75
WDR53	0	genome.wustl.edu	37	3	196287913	196287913	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	196287913	196287913	C	T	SNP	WDR53	ENST00000332629	human	ensembl	74_37	-1	known	missense	c.434	p.R145Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR53	HGNC	ENSG00000185798				118	0	0	58	28	32.5581
NRROS	0	genome.wustl.edu	37	3	196386986	196386986	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	196386986	196386986	T	C	SNP	NRROS	ENST00000328557	human	ensembl	74_37	+1	known	missense	c.472	p.S158P	0.996	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	NRROS	HGNC	ENSG00000174004				68	0	0	49	17	25.7576
TRIM71	0	genome.wustl.edu	37	3	32859727	32859727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	32859727	32859727	C	T	SNP	TRIM71	ENST00000383763	human	ensembl	74_37	+1	known	missense	c.155	p.A52V	0.996	smart_Znf_RING,pfscan_Znf_RING	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557				21	0	0	15	4	21.0526
SLC22A14	0	genome.wustl.edu	37	3	38357186	38357186	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	38357186	38357186	C	A	SNP	SLC22A14	ENST00000273173	human	ensembl	74_37	+1	known	missense	c.1516	p.L506I	0.840	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A14	HGNC	ENSG00000144671				188	1	0.529101	141	48	25.3968
SCN10A	0	genome.wustl.edu	37	3	38765017	38765017	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	38765017	38765017	C	A	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.3256	p.G1086C	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				25	0	0	12	6	33.3333
SCN10A	0	genome.wustl.edu	37	3	38768219	38768219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	38768219	38768219	C	T	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.2965	p.A989T	0.040	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				97	0	0	85	17	16.6667
KLHL40	0	genome.wustl.edu	37	3	42727236	42727236	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	42727236	42727236	C	T	SNP	KLHL40	ENST00000287777	human	ensembl	74_37	+1	known	silent	c.126	p.R42	0.998	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL40	HGNC	ENSG00000157119				55	0	0	42	18	30
CCDC13	0	genome.wustl.edu	37	3	42793519	42793519	+	Splice_Site	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	42793519	42793519	T	C	SNP	CCDC13	ENST00000310232	human	ensembl	74_37	-1	known	splice_site	c.514-2	e4-2	1.000	-	-	-	no_errors	CCDC13	HGNC	ENSG00000244607				82	0	0	74	20	21.2766
TCAIM	0	genome.wustl.edu	37	3	44449212	44449212	+	RNA	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	44449212	44449212	G	T	SNP	TCAIM	ENST00000469246	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	TCAIM	HGNC	ENSG00000179152				35	0	0	17	9	34.6154
FYCO1	0	genome.wustl.edu	37	3	46008259	46008259	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	46008259	46008259	T	C	SNP	FYCO1	ENST00000535325	human	ensembl	74_37	-1	known	missense	c.2567	p.Q856R	0.859	NULL	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820				65	0	0	46	17	26.9841
ITPR1	0	genome.wustl.edu	37	3	4718358	4718358	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	4718358	4718358	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.2795	p.R932Q	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				54	0	0	23	9	28.125
PTPN23	0	genome.wustl.edu	37	3	47447502	47447502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	47447502	47447502	G	A	SNP	PTPN23	ENST00000265562	human	ensembl	74_37	+1	known	missense	c.512	p.R171H	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_BRO1_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN23	HGNC	ENSG00000076201				44	0	0	22	9	29.0323
COL7A1	0	genome.wustl.edu	37	3	48626315	48626315	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	48626315	48626315	C	A	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	missense	c.2428	p.G810C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				88	0	0	61	26	29.8851
WDR6	0	genome.wustl.edu	37	3	49050488	49050488	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	49050488	49050488	G	A	SNP	WDR6	ENST00000395474	human	ensembl	74_37	+1	known	silent	c.1611	p.V537	0.957	superfamily_Quino_amine_DH_bsu,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR6	HGNC	ENSG00000178252				63	0	0	58	23	28.3951
NDUFAF3	0	genome.wustl.edu	37	3	49060598	49060598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	49060598	49060598	C	T	SNP	NDUFAF3	ENST00000326925	human	ensembl	74_37	+1	known	missense	c.548	p.A183V	0.126	NULL	pfam_NADH_Ub_cplx-1_asu_assmbl-fac3,superfamily_NADH_Ub_cplx-1_asu_assmbl-fac3	-	no_errors	NDUFAF3	HGNC	ENSG00000178057				110	0	0	71	13	15.4762
UBA7	0	genome.wustl.edu	37	3	49848752	49848752	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	49848752	49848752	G	T	SNP	UBA7	ENST00000333486	human	ensembl	74_37	-1	known	missense	c.1076	p.P359H	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179				98	0	0	60	30	33.3333
RBM6	0	genome.wustl.edu	37	3	50103805	50103805	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	50103805	50103805	A	C	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	missense	c.2813	p.E938A	0.930	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				148	0	0	89	26	22.6087
RBM5	0	genome.wustl.edu	37	3	50129540	50129540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	50129540	50129540	C	T	SNP	RBM5	ENST00000347869	human	ensembl	74_37	+1	known	missense	c.82	p.R28C	0.997	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM5	HGNC	ENSG00000003756				100	0	0	58	13	18.3099
SEMA3F	0	genome.wustl.edu	37	3	50220116	50220116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	50220116	50220116	C	T	SNP	SEMA3F	ENST00000002829	human	ensembl	74_37	+1	known	missense	c.803	p.A268V	0.942	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3F	HGNC	ENSG00000001617				106	0	0	77	38	33.0435
IFRD2	0	genome.wustl.edu	37	3	50328082	50328082	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	50328082	50328082	C	T	SNP	IFRD2	ENST00000336089	human	ensembl	74_37	-1	known	silent	c.585	p.S195	0.608	NULL	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD2	HGNC	ENSG00000214706				44	0	0	33	10	23.2558
CACNA2D2	0	genome.wustl.edu	37	3	50418437	50418437	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	50418437	50418437	C	A	SNP	CACNA2D2	ENST00000435965	human	ensembl	74_37	-1	known	missense	c.773	p.R258L	1.000	pfam_VWA_N	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402				115	0	0	89	41	31.5385
DNAH1	0	genome.wustl.edu	37	3	52391683	52391683	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	52391683	52391683	C	A	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.3912	p.N1304K	1.000	pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				15	0	0	14	3	17.6471
RFT1	0	genome.wustl.edu	37	3	53126558	53126558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	53126558	53126558	C	T	SNP	RFT1	ENST00000296292	human	ensembl	74_37	-1	known	missense	c.1285	p.V429M	0.998	pfam_RFT1	pfam_RFT1	-	no_errors	RFT1	HGNC	ENSG00000163933				20	0	0	15	9	37.5
CHDH	0	genome.wustl.edu	37	3	53854583	53854583	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	53854583	53854583	G	A	SNP	CHDH	ENST00000315251	human	ensembl	74_37	-1	known	silent	c.1038	p.C346	1.000	pirsf_GMC_OxRdtase	pfam_GMC_OxRdtase_N,pfam_GMC_OxRtase_C,pirsf_GMC_OxRdtase	-	no_errors	CHDH	HGNC	ENSG00000016391				163	0	0	117	8	6.4
SLMAP	0	genome.wustl.edu	37	3	57847813	57847813	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	57847813	57847813	G	T	SNP	SLMAP	ENST00000428312	human	ensembl	74_37	+1	known	missense	c.966	p.K322N	1.000	NULL	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLMAP	HGNC	ENSG00000163681				104	0	0	95	25	20.8333
FEZF2	0	genome.wustl.edu	37	3	62357003	62357003	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	62357003	62357003	G	C	SNP	FEZF2	ENST00000283268	human	ensembl	74_37	-1	known	missense	c.1009	p.Q337E	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266				102	0	0	80	30	27.2727
FEZF2	0	genome.wustl.edu	37	3	62358211	62358211	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	62358211	62358211	G	A	SNP	FEZF2	ENST00000283268	human	ensembl	74_37	-1	known	silent	c.333	p.G111	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266				10	0	0	8	4	33.3333
PRICKLE2	0	genome.wustl.edu	37	3	64142957	64142957	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	64142957	64142957	C	T	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	missense	c.481	p.V161I	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637				78	0	0	45	19	29.6875
CNTN3	0	genome.wustl.edu	37	3	74315771	74315771	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	74315771	74315771	G	A	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	silent	c.2847	p.N949	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				137	0	0	81	35	30.1724
ROBO2	0	genome.wustl.edu	37	3	77607297	77607297	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	77607297	77607297	A	G	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	silent	c.1434	p.L478	0.984	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				67	0	0	63	20	24.0964
ROBO2	0	genome.wustl.edu	37	3	77666946	77666946	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	77666946	77666946	A	G	SNP	ROBO2	ENST00000469233	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ROBO2	HGNC	ENSG00000185008				41	0	0	25	8	24.2424
CADM2	0	genome.wustl.edu	37	3	85961603	85961603	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	85961603	85961603	A	T	SNP	CADM2	ENST00000405615	human	ensembl	74_37	+1	known	missense	c.589	p.S197C	0.710	pfam_CD80_C2-set,pfam_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM2	HGNC	ENSG00000175161				87	0	0	58	22	27.5
ZNF654	0	genome.wustl.edu	37	3	88189154	88189154	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	88189154	88189154	C	T	SNP	ZNF654	ENST00000309495	human	ensembl	74_37	+1	known	nonsense	c.694	p.Q232*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF654	HGNC	ENSG00000175105				42	0	0	27	15	35.7143
RAD18	0	genome.wustl.edu	37	3	8944129	8944129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	8944129	8944129	G	A	SNP	RAD18	ENST00000264926	human	ensembl	74_37	-1	known	missense	c.1103	p.S368L	0.000	NULL	pfam_SAP_dom,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_dom,pfscan_Znf_RING,pfscan_SAP_dom	-	no_errors	RAD18	HGNC	ENSG00000070950				34	0	0	32	8	20
MTHFD2P1	0	genome.wustl.edu	37	3	95374367	95374367	+	RNA	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	95374367	95374367	T	G	SNP	MTHFD2P1	ENST00000494840	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MTHFD2P1	HGNC	ENSG00000244681				89	0	0	72	5	6.49351
BRPF1	0	genome.wustl.edu	37	3	9781016	9781016	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	9781016	9781016	T	C	SNP	BRPF1	ENST00000383829	human	ensembl	74_37	+1	known	silent	c.933	p.P311	0.973	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983				129	0	0	102	34	25
GPR15	0	genome.wustl.edu	37	3	98251363	98251363	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	98251363	98251363	C	T	SNP	GPR15	ENST00000284311	human	ensembl	74_37	+1	known	silent	c.486	p.C162	0.996	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	GPR15	HGNC	ENSG00000154165				90	0	0	50	18	26.4706
FILIP1L	0	genome.wustl.edu	37	3	99567357	99567357	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	99567357	99567357	T	C	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	missense	c.3163	p.I1055V	1.000	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				240	0	0	183	53	22.4576
CYP2U1	0	genome.wustl.edu	37	4	108871514	108871514	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	108871514	108871514	C	A	SNP	CYP2U1	ENST00000332884	human	ensembl	74_37	+1	known	missense	c.1570	p.L524M	0.041	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B,prints_Cyt_P450_E_grp-I_CYP2D-like	-	no_errors	CYP2U1	HGNC	ENSG00000155016				95	0	0	50	6	10.7143
ALPK1	0	genome.wustl.edu	37	4	113352014	113352014	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	113352014	113352014	C	T	SNP	ALPK1	ENST00000177648	human	ensembl	74_37	+1	known	silent	c.1311	p.F437	0.946	NULL	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331				86	0	0	60	21	25.9259
RPS26P11	0	genome.wustl.edu	37	4	114135499	114135499	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	114135499	114135499	G	A	SNP	RPS26P11	ENST00000356247	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.992	-	-	-	no_errors	AC004057.1	Clone_based_vega_gene	ENSG00000196656				21	0	0	17	8	32
ANK2	0	genome.wustl.edu	37	4	114275552	114275552	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	114275552	114275552	G	A	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	silent	c.5778	p.P1926	0.005	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				109	0	0	78	27	25.7143
CTBP1	0	genome.wustl.edu	37	4	1207322	1207322	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	1207322	1207322	T	C	SNP	CTBP1	ENST00000290921	human	ensembl	74_37	-1	known	missense	c.965	p.Q322R	1.000	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd	-	no_errors	CTBP1	HGNC	ENSG00000159692				92	0	0	67	20	22.9885
ADAD1	0	genome.wustl.edu	37	4	123350870	123350870	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	123350870	123350870	C	A	SNP	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	silent	c.1707	p.P569	0.997	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113				93	0	0	56	21	27.2727
ANKRD50	0	genome.wustl.edu	37	4	125590622	125590622	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	125590622	125590622	C	T	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	silent	c.3810	p.G1270	0.663	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458				246	0	0	216	12	5.26316
FAT4	0	genome.wustl.edu	37	4	126411264	126411264	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	126411264	126411264	C	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.13287	p.D4429E	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				150	0	0	155	45	22.5
SLC25A31	0	genome.wustl.edu	37	4	128688241	128688241	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	128688241	128688241	A	G	SNP	SLC25A31	ENST00000281154	human	ensembl	74_37	+1	known	missense	c.499	p.K167E	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	-	no_errors	SLC25A31	HGNC	ENSG00000151475				82	0	0	61	19	23.75
MAEA	0	genome.wustl.edu	37	4	1326598	1326598	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	1326598	1326598	G	A	SNP	MAEA	ENST00000303400	human	ensembl	74_37	+1	known	missense	c.710	p.R237H	1.000	smart_CRA_dom	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MAEA	HGNC	ENSG00000090316				41	0	0	35	12	25.5319
PCDH10	0	genome.wustl.edu	37	4	134073056	134073056	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	134073056	134073056	T	C	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	silent	c.1761	p.R587	0.988	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				76	0	0	54	24	30.7692
NKX3-2	0	genome.wustl.edu	37	4	13545772	13545772	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	13545772	13545772	T	C	SNP	NKX3-2	ENST00000382438	human	ensembl	74_37	-1	known	silent	c.267	p.E89	0.482	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX3-2	HGNC	ENSG00000109705				22	0	0	12	9	42.8571
BOD1L1	0	genome.wustl.edu	37	4	13602317	13602317	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	13602317	13602317	T	G	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.6207	p.K2069N	0.645	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				47	0	0	35	6	14.6341
CRIPAK	0	genome.wustl.edu	37	4	1388615	1388615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	1388615	1388615	C	T	SNP	CRIPAK	ENST00000324803	human	ensembl	74_37	+1	known	missense	c.316	p.R106C	0.002	smart_Post-SET_dom	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979				350	0	0	235	162	40.806
ELF2	0	genome.wustl.edu	37	4	139993141	139993141	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	139993141	139993141	A	G	SNP	ELF2	ENST00000379550	human	ensembl	74_37	-1	known	silent	c.405	p.A135	0.999	NULL	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF2	HGNC	ENSG00000109381				101	0	0	48	18	27.2727
TBC1D9	0	genome.wustl.edu	37	4	141555219	141555219	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	141555219	141555219	G	T	SNP	TBC1D9	ENST00000442267	human	ensembl	74_37	-1	known	missense	c.2629	p.L877I	0.772	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436				55	0	0	51	11	17.7419
ZNF827	0	genome.wustl.edu	37	4	146824094	146824094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	146824094	146824094	G	A	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	missense	c.317	p.S106F	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612				75	0	0	67	22	24.7191
POU4F2	0	genome.wustl.edu	37	4	147560460	147560460	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	147560460	147560460	C	T	SNP	POU4F2	ENST00000281321	human	ensembl	74_37	+1	known	silent	c.168	p.G56	0.987	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615				11	0	0	13	4	23.5294
LRBA	0	genome.wustl.edu	37	4	151814245	151814245	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	151814245	151814245	A	G	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	silent	c.2124	p.P708	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				29	0	0	25	6	19.3548
PRSS48	0	genome.wustl.edu	37	4	152203538	152203538	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	152203538	152203538	G	A	SNP	PRSS48	ENST00000455694	human	ensembl	74_37	+1	known	missense	c.454	p.G152R	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS48	HGNC	ENSG00000189099				109	0	0	66	18	21.4286
FHDC1	0	genome.wustl.edu	37	4	153897805	153897805	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	153897805	153897805	G	A	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	missense	c.3362	p.R1121K	0.623	NULL	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				23	0	0	11	9	45
DCHS2	0	genome.wustl.edu	37	4	155253876	155253876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	155253876	155253876	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.1987	p.A663T	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				135	0	0	89	20	18.3486
TDO2	0	genome.wustl.edu	37	4	156841067	156841067	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	156841067	156841067	C	A	SNP	TDO2	ENST00000536354	human	ensembl	74_37	+1	known	missense	c.1146	p.N382K	0.883	NULL	pfam_Trp_2_3_dOase	-	no_errors	TDO2	HGNC	ENSG00000151790				45	0	0	30	12	28.5714
GLRB	0	genome.wustl.edu	37	4	158065087	158065087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	158065087	158065087	G	A	SNP	GLRB	ENST00000264428	human	ensembl	74_37	+1	known	missense	c.880	p.A294T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Glycine_rcpt_B,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRB	HGNC	ENSG00000109738				98	0	0	73	25	25.5102
TMEM144	0	genome.wustl.edu	37	4	159165463	159165463	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	159165463	159165463	G	T	SNP	TMEM144	ENST00000296529	human	ensembl	74_37	+1	known	missense	c.916	p.A306S	1.000	pfam_Sugar_transport	pfam_DUF1632_TMEM144,pfam_Sugar_transport	-	no_errors	TMEM144	HGNC	ENSG00000164124				78	0	0	71	24	25.2632
FSTL5	0	genome.wustl.edu	37	4	162577520	162577520	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	162577520	162577520	T	C	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.854	p.N285S	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				44	0	0	27	8	22.8571
NEK1	0	genome.wustl.edu	37	4	170400581	170400581	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	170400581	170400581	T	C	SNP	NEK1	ENST00000507142	human	ensembl	74_37	-1	known	silent	c.2112	p.V704	0.933	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601				76	0	0	35	14	28.5714
LETM1	0	genome.wustl.edu	37	4	1843251	1843251	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	1843251	1843251	C	T	SNP	LETM1	ENST00000302787	human	ensembl	74_37	-1	known	silent	c.417	p.P139	0.013	NULL	pfam_LETM1,pfscan_EF_hand_dom	-	no_errors	LETM1	HGNC	ENSG00000168924				76	0	0	55	18	24.6575
TRIML2	0	genome.wustl.edu	37	4	189020263	189020263	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	189020263	189020263	G	T	SNP	TRIML2	ENST00000512729	human	ensembl	74_37	-1	known	missense	c.397	p.Q133K	0.051	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	TRIML2	HGNC	ENSG00000179046				132	0	0	75	27	26.4706
TRIML1	0	genome.wustl.edu	37	4	189061099	189061099	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	189061099	189061099	C	T	SNP	TRIML1	ENST00000332517	human	ensembl	74_37	+1	known	silent	c.387	p.S129	0.055	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIML1	HGNC	ENSG00000184108				80	0	0	51	19	27.1429
WHSC1	0	genome.wustl.edu	37	4	1954995	1954995	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	1954995	1954995	A	G	SNP	WHSC1	ENST00000382888	human	ensembl	74_37	+1	known	silent	c.126	p.Q42	0.000	NULL	pfam_SET_dom,pfam_PWWP_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_PWWP_dom,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	WHSC1	HGNC	ENSG00000109685				42	0	0	19	6	24
WHSC1	0	genome.wustl.edu	37	4	1980533	1980533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	1980533	1980533	C	T	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	missense	c.3995	p.S1332L	0.011	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				60	0	0	40	21	34.4262
CCKAR	0	genome.wustl.edu	37	4	26483341	26483341	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	26483341	26483341	C	A	SNP	CCKAR	ENST00000295589	human	ensembl	74_37	-1	known	missense	c.1206	p.E402D	0.997	prints_Cholcy_rcpt_A,prints_Gastrin_rcpt	pfam_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394				177	0	0	102	37	26.6187
NOP14	0	genome.wustl.edu	37	4	2943337	2943337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	2943337	2943337	G	A	SNP	NOP14	ENST00000416614	human	ensembl	74_37	-1	known	missense	c.2171	p.A724V	0.004	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269				35	0	0	24	7	22.5806
HTT	0	genome.wustl.edu	37	4	3219644	3219644	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	3219644	3219644	C	G	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	missense	c.7207	p.P2403A	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				143	1	0.694444	108	18	14.2857
HGFAC	0	genome.wustl.edu	37	4	3449296	3449296	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	3449296	3449296	G	A	SNP	HGFAC	ENST00000382774	human	ensembl	74_37	+1	known	missense	c.1433	p.G478D	0.342	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EG-like_dom,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGFAC	HGNC	ENSG00000109758				427	0	0	311	117	27.3364
WDR19	0	genome.wustl.edu	37	4	39246134	39246134	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	39246134	39246134	C	T	SNP	WDR19	ENST00000399820	human	ensembl	74_37	+1	known	silent	c.2607	p.Y869	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796				93	0	0	70	21	23.0769
UGDH	0	genome.wustl.edu	37	4	39511480	39511480	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	39511480	39511480	T	C	SNP	UGDH	ENST00000316423	human	ensembl	74_37	-1	known	missense	c.711	p.I237M	1.000	pfam_UDP-Glc/GDP-Man_DH_dimer,superfamily_6-PGluconate_DH_C-like,tigrfam_UDP-Glc/GDP-Man	pfam_UDP-Glc/GDP-Man_DH_N,pfam_UDP-Glc/GDP-Man_DH_C,pfam_UDP-Glc/GDP-Man_DH_dimer,superfamily_UDP-Glc/GDP-Man_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_UDP-Glc/GDP-Man	-	no_errors	UGDH	HGNC	ENSG00000109814				80	0	0	46	18	28.125
SMIM14	0	genome.wustl.edu	37	4	39606701	39606701	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	39606701	39606701	A	G	SNP	SMIM14	ENST00000295958	human	ensembl	74_37	-1	known	missense	c.65	p.L22P	1.000	pfam_Uncharacterised_CD034/YQF4	pfam_Uncharacterised_CD034/YQF4	-	no_errors	SMIM14	HGNC	ENSG00000163683				76	0	0	51	11	17.7419
ATP10D	0	genome.wustl.edu	37	4	47538508	47538508	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	47538508	47538508	A	G	SNP	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	missense	c.1070	p.E357G	0.208	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				188	0	0	133	50	27.3224
PDGFRA	0	genome.wustl.edu	37	4	55140717	55140717	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	55140717	55140717	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	74_37	+1	known	silent	c.1578	p.T526	0.999	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRA	HGNC	ENSG00000134853				118	0	0	79	28	26.1682
KDR	0	genome.wustl.edu	37	4	55956190	55956190	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	55956190	55956190	A	G	SNP	KDR	ENST00000263923	human	ensembl	74_37	-1	known	missense	c.3125	p.V1042A	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR2_rcpt	-	no_errors	KDR	HGNC	ENSG00000128052				127	0	0	64	20	23.8095
CEP135	0	genome.wustl.edu	37	4	56823491	56823491	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	56823491	56823491	A	G	SNP	CEP135	ENST00000257287	human	ensembl	74_37	+1	known	missense	c.575	p.D192G	1.000	NULL	superfamily_Prefoldin,superfamily_EB1_C	-	no_errors	CEP135	HGNC	ENSG00000174799				119	0	0	64	24	27.2727
KIAA1211	0	genome.wustl.edu	37	4	57182056	57182056	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	57182056	57182056	G	A	SNP	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	silent	c.2388	p.P796	0.511	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265				106	0	0	83	28	25.2252
EVC	0	genome.wustl.edu	37	4	5733332	5733332	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	5733332	5733332	A	G	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	missense	c.565	p.S189G	0.123	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				101	0	0	68	25	26.8817
REST	0	genome.wustl.edu	37	4	57798281	57798281	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	57798281	57798281	T	C	SNP	REST	ENST00000309042	human	ensembl	74_37	+1	known	missense	c.3257	p.V1086A	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093				82	0	0	69	36	34.2857
MAN2B2	0	genome.wustl.edu	37	4	6599929	6599929	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	6599929	6599929	A	G	SNP	MAN2B2	ENST00000285599	human	ensembl	74_37	+1	known	missense	c.1253	p.Q418R	1.000	pfam_Glyco_hydro_38_cen_dom,smart_Glyco_hydro_38_cen_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B2	HGNC	ENSG00000013288				93	0	0	86	32	27.1186
EPHA5	0	genome.wustl.edu	37	4	66201823	66201823	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	66201823	66201823	T	G	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	missense	c.2679	p.E893D	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				63	0	0	47	19	28.7879
MFSD7	0	genome.wustl.edu	37	4	676598	676598	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	676598	676598	C	T	SNP	MFSD7	ENST00000404286	human	ensembl	74_37	-1	known	silent	c.1236	p.Q412	0.699	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD7	HGNC	ENSG00000169026				23	0	0	16	6	27.2727
AFAP1-AS1	0	genome.wustl.edu	37	4	7774803	7774803	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	7774803	7774803	A	G	SNP	AFAP1-AS1	ENST00000608442	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AFAP1-AS1	HGNC	ENSG00000272620				15	0	0	14	5	26.3158
ACOX3	0	genome.wustl.edu	37	4	8401375	8401375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	8401375	8401375	C	T	SNP	ACOX3	ENST00000356406	human	ensembl	74_37	-1	known	missense	c.781	p.A261T	1.000	superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008				76	0	0	64	15	18.9873
CDS1	0	genome.wustl.edu	37	4	85525514	85525514	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	85525514	85525514	T	C	SNP	CDS1	ENST00000295887	human	ensembl	74_37	+1	known	missense	c.236	p.L79S	0.988	pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624				96	0	0	53	20	27.3973
WDFY3	0	genome.wustl.edu	37	4	85598426	85598426	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	85598426	85598426	T	C	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	silent	c.10383	p.S3461	0.001	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				104	0	0	56	13	18.8406
GAK	0	genome.wustl.edu	37	4	875753	875753	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	875753	875753	C	T	SNP	GAK	ENST00000314167	human	ensembl	74_37	-1	known	missense	c.1603	p.A535T	1.000	pfscan_Phosphatase_tensin-typ	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950				15	0	0	15	7	31.8182
HERC3	0	genome.wustl.edu	37	4	89571095	89571095	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	89571095	89571095	G	A	SNP	HERC3	ENST00000264345	human	ensembl	74_37	+1	known	missense	c.331	p.G111R	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC3	HGNC	ENSG00000138641				122	0	0	89	26	22.6087
IDUA	0	genome.wustl.edu	37	4	995599	995599	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	995599	995599	G	A	SNP	IDUA	ENST00000453894	human	ensembl	74_37	+1	known	missense	c.581	p.C194Y	1.000	pfam_Glyco_hydro_39,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_39,superfamily_Glycoside_hydrolase_SF,superfamily_Fibronectin_type3,prints_Glyco_hydro_39	-	no_errors	IDUA	HGNC	ENSG00000127415				18	0	0	20	3	13.0435
MARCH6	0	genome.wustl.edu	37	5	10391770	10391770	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	10391770	10391770	G	A	SNP	MARCH6	ENST00000274140	human	ensembl	74_37	+1	known	silent	c.693	p.E231	0.999	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH6	HGNC	ENSG00000145495				52	0	0	45	13	22.4138
EPB41L4A	0	genome.wustl.edu	37	5	111540160	111540160	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	111540160	111540160	G	A	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	missense	c.1288	p.R430C	1.000	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				133	1	0.746269	90	35	28
SLC6A19	0	genome.wustl.edu	37	5	1216926	1216926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	1216926	1216926	G	A	SNP	SLC6A19	ENST00000304460	human	ensembl	74_37	+1	known	missense	c.1039	p.G347R	0.047	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A19	HGNC	ENSG00000174358				166	0	0	131	56	29.9465
ALDH7A1	0	genome.wustl.edu	37	5	125903997	125903997	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	125903997	125903997	G	A	SNP	ALDH7A1	ENST00000409134	human	ensembl	74_37	-1	known	silent	c.825	p.S275	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH7A1	HGNC	ENSG00000164904				154	0	0	105	40	27.5862
FBN2	0	genome.wustl.edu	37	5	127595417	127595417	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	127595417	127595417	G	A	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	silent	c.8469	p.P2823	0.039	pirsf_FBN	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				118	0	0	100	36	26.4706
FBN2	0	genome.wustl.edu	37	5	127714547	127714547	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	127714547	127714547	C	A	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.1640	p.G547V	1.000	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				103	0	0	76	31	28.972
RAPGEF6	0	genome.wustl.edu	37	5	130825260	130825260	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	130825260	130825260	T	C	SNP	RAPGEF6	ENST00000509018	human	ensembl	74_37	-1	known	missense	c.1819	p.T607A	1.000	pfam_PDZ,superfamily_Ras_GEF_dom,superfamily_PDZ,smart_PDZ	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987				16	0	0	18	8	30.7692
CDKL3	0	genome.wustl.edu	37	5	133541779	133541779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	133541779	133541779	C	T	SNP	CDKL3	ENST00000609654	human	ensembl	74_37	-1	known	missense	c.1196	p.R399Q	1.000	smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	CDKL3	HGNC	ENSG00000006837				107	0	0	59	20	25.3165
SAR1B	0	genome.wustl.edu	37	5	133944077	133944077	+	Silent	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	133944077	133944077	A	C	SNP	SAR1B	ENST00000402673	human	ensembl	74_37	-1	known	silent	c.465	p.G155	0.998	pfam_Small_GTPase_ARF/SAR,pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	SAR1B	HGNC	ENSG00000152700				15	0	0	3	2	40
SEC24A	0	genome.wustl.edu	37	5	133997147	133997147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	133997147	133997147	G	A	SNP	SEC24A	ENST00000398844	human	ensembl	74_37	+1	known	missense	c.436	p.A146T	0.492	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615				112	0	0	82	29	26.1261
SLC25A48	0	genome.wustl.edu	37	5	135188361	135188361	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	135188361	135188361	G	A	SNP	SLC25A48	ENST00000420621	human	ensembl	74_37	+1	known	missense	c.272	p.R91H	1.000	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A48	HGNC	ENSG00000145832				152	0	0	114	37	24.5033
BRD8	0	genome.wustl.edu	37	5	137507779	137507779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	137507779	137507779	C	T	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.161	p.R54H	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				142	0	0	99	26	20.8
PSD2	0	genome.wustl.edu	37	5	139217239	139217239	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	139217239	139217239	G	A	SNP	PSD2	ENST00000274710	human	ensembl	74_37	+1	known	silent	c.1695	p.S565	0.118	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD2	HGNC	ENSG00000146005				126	0	0	70	27	27.8351
NRG2	0	genome.wustl.edu	37	5	139260469	139260469	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	139260469	139260469	G	A	SNP	NRG2	ENST00000545385	human	ensembl	74_37	-1	known	silent	c.963	p.T321	0.009	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom	-	no_errors	NRG2	HGNC	ENSG00000158458				95	0	0	89	20	18.3486
ANKHD1	0	genome.wustl.edu	37	5	139905605	139905605	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	139905605	139905605	C	G	SNP	ANKHD1	ENST00000297183	human	ensembl	74_37	+1	known	missense	c.4517	p.P1506R	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503				107	0	0	75	27	26.4706
HARS	0	genome.wustl.edu	37	5	140056939	140056939	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140056939	140056939	G	A	SNP	HARS	ENST00000504156	human	ensembl	74_37	-1	known	missense	c.796	p.R266C	1.000	pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,tigrfam_His-tRNA-ligase	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_His-tRNA-ligase	-	no_errors	HARS	HGNC	ENSG00000170445				158	0	0	110	38	25.6757
PCDHA1	0	genome.wustl.edu	37	5	140167397	140167397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140167397	140167397	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	missense	c.1522	p.V508M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				174	0	0	131	32	19.6319
PCDHA2	0	genome.wustl.edu	37	5	140176708	140176708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140176708	140176708	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	missense	c.2159	p.A720V	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969				167	0	0	132	56	29.7872
PCDHA3	0	genome.wustl.edu	37	5	140182372	140182372	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140182372	140182372	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	silent	c.1590	p.L530	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				241	0	0	249	76	23.3846
PCDHA7	0	genome.wustl.edu	37	5	140215088	140215088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140215088	140215088	G	A	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.1120	p.V374M	0.507	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				228	0	0	178	49	21.5859
PCDHA13	0	genome.wustl.edu	37	5	140263716	140263716	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140263716	140263716	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	silent	c.1863	p.P621	0.897	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389				182	0	0	131	50	27.6243
PCDHB3	0	genome.wustl.edu	37	5	140482221	140482221	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140482221	140482221	T	C	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1988	p.V663A	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				225	0	0	179	43	19.3694
PCDHB5	0	genome.wustl.edu	37	5	140516339	140516339	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140516339	140516339	C	T	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	silent	c.1323	p.S441	0.160	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				278	0	0	208	76	26.7606
PCDHB5	0	genome.wustl.edu	37	5	140516436	140516436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140516436	140516436	G	A	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.1420	p.A474T	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				291	1	0.342466	239	92	27.7946
PCDHB6	0	genome.wustl.edu	37	5	140530736	140530736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140530736	140530736	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.898	p.R300W	0.428	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				123	0	0	56	28	33.3333
PCDHB6	0	genome.wustl.edu	37	5	140531711	140531711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140531711	140531711	G	A	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.1873	p.A625T	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				128	0	0	97	37	27.6119
PCDHB12	0	genome.wustl.edu	37	5	140590139	140590139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140590139	140590139	G	A	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	missense	c.1660	p.A554T	0.385	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				147	0	0	118	31	20.8054
PCDHB13	0	genome.wustl.edu	37	5	140594674	140594674	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140594674	140594674	A	G	SNP	PCDHB13	ENST00000341948	human	ensembl	74_37	+1	known	missense	c.979	p.T327A	0.003	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372				297	0	0	118	44	27.1605
PCDHB13	0	genome.wustl.edu	37	5	140594675	140594675	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140594675	140594675	C	G	SNP	PCDHB13	ENST00000341948	human	ensembl	74_37	+1	known	missense	c.980	p.T327S	0.087	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372				297	0	0	122	42	25.6098
PCDHB18	0	genome.wustl.edu	37	5	140615982	140615982	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140615982	140615982	C	T	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.937	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				186	0	0	119	63	34.6154
PCDHGA2	0	genome.wustl.edu	37	5	140720214	140720214	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140720214	140720214	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	missense	c.1676	p.A559V	0.005	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				305	0	0	256	83	24.4838
PCDHGA6	0	genome.wustl.edu	37	5	140755320	140755320	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140755320	140755320	A	G	SNP	PCDHGA6	ENST00000517434	human	ensembl	74_37	+1	known	missense	c.1670	p.D557G	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA6	HGNC	ENSG00000253731				325	1	0.306748	231	71	23.5099
PCDHGB4	0	genome.wustl.edu	37	5	140768971	140768971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140768971	140768971	C	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	74_37	+1	known	missense	c.1520	p.A507V	0.081	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953				142	0	0	96	31	24.4094
PCDHGA11	0	genome.wustl.edu	37	5	140802793	140802793	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140802793	140802793	G	A	SNP	PCDHGA11	ENST00000398587	human	ensembl	74_37	+1	known	missense	c.1999	p.D667N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873				117	0	0	117	7	5.64516
PCDHGC3	0	genome.wustl.edu	37	5	140856568	140856568	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140856568	140856568	C	T	SNP	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	silent	c.885	p.F295	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				159	1	0.625	112	33	22.7586
PCDHGC4	0	genome.wustl.edu	37	5	140866151	140866151	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140866151	140866151	G	T	SNP	PCDHGC4	ENST00000306593	human	ensembl	74_37	+1	known	missense	c.1411	p.G471W	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419				203	0	0	130	44	25.2874
SPINK5	0	genome.wustl.edu	37	5	147494018	147494018	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	147494018	147494018	C	A	SNP	SPINK5	ENST00000359874	human	ensembl	74_37	+1	known	missense	c.1981	p.H661N	1.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK5	HGNC	ENSG00000133710				95	0	0	53	16	23.1884
NDST1	0	genome.wustl.edu	37	5	149900963	149900963	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	149900963	149900963	G	A	SNP	NDST1	ENST00000261797	human	ensembl	74_37	+1	known	silent	c.147	p.A49	0.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST1	HGNC	ENSG00000070614				107	0	0	112	38	25.3333
ZNF300P1	0	genome.wustl.edu	37	5	150310818	150310818	+	RNA	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	150310818	150310818	T	G	SNP	ZNF300P1	ENST00000520773	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF300P1	HGNC	ENSG00000197083				38	0	0	26	5	16.129
MRPL22	0	genome.wustl.edu	37	5	154346297	154346297	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	154346297	154346297	G	A	SNP	MRPL22	ENST00000523037	human	ensembl	74_37	+1	known	missense	c.461	p.G154D	1.000	pfam_Ribosomal_L22,superfamily_Ribosomal_L22	pfam_Ribosomal_L22,superfamily_Ribosomal_L22	-	no_errors	MRPL22	HGNC	ENSG00000082515				135	0	0	108	30	21.7391
FBXL7	0	genome.wustl.edu	37	5	15928451	15928451	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	15928451	15928451	A	G	SNP	FBXL7	ENST00000504595	human	ensembl	74_37	+1	known	missense	c.580	p.S194G	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL7	HGNC	ENSG00000183580				58	0	0	33	12	26.6667
LCP2	0	genome.wustl.edu	37	5	169693822	169693822	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	169693822	169693822	G	T	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	silent	c.762	p.P254	1.000	NULL	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462				170	0	0	164	40	19.6078
RANBP17	0	genome.wustl.edu	37	5	170346619	170346619	+	Splice_Site	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	170346619	170346619	T	C	SNP	RANBP17	ENST00000523189	human	ensembl	74_37	+1	known	splice_site	c.1274+2	e11+2	1.000	-	-	-	no_errors	RANBP17	HGNC	ENSG00000204764				114	1	0.869565	84	16	16
CPEB4	0	genome.wustl.edu	37	5	173376544	173376544	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	173376544	173376544	C	A	SNP	CPEB4	ENST00000265085	human	ensembl	74_37	+1	known	missense	c.1490	p.P497H	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742				50	0	0	31	6	16.2162
FGFR4	0	genome.wustl.edu	37	5	176518804	176518804	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	176518804	176518804	T	C	SNP	FGFR4	ENST00000292408	human	ensembl	74_37	+1	known	missense	c.722	p.V241A	1.000	pirsf_FGF_rcpt_fam,smart_Ig_sub	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR4	HGNC	ENSG00000160867				95	0	0	97	17	14.9123
FGFR4	0	genome.wustl.edu	37	5	176524385	176524385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	176524385	176524385	C	T	SNP	FGFR4	ENST00000292408	human	ensembl	74_37	+1	known	missense	c.2246	p.A749V	0.997	pirsf_FGF_rcpt_fam,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR4	HGNC	ENSG00000160867				40	0	0	30	3	9.09091
ADAMTS2	0	genome.wustl.edu	37	5	178541286	178541286	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	178541286	178541286	A	G	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	missense	c.3218	p.M1073T	1.000	pfscan_PLAC	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				53	0	0	42	5	10.6383
TBC1D9B	0	genome.wustl.edu	37	5	179290791	179290791	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	179290791	179290791	C	G	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.3410	p.G1137A	0.993	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				155	0	0	134	46	25.5556
TRIM7	0	genome.wustl.edu	37	5	180630503	180630503	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	180630503	180630503	C	G	SNP	TRIM7	ENST00000334421	human	ensembl	74_37	-1	known	missense	c.660	p.E220D	0.002	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Znf_B-box_chordata	-	no_errors	TRIM7	HGNC	ENSG00000146054				139	0	0	108	35	24.4755
CDH12	0	genome.wustl.edu	37	5	21783501	21783501	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	21783501	21783501	C	T	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	silent	c.1359	p.A453	0.040	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				105	0	0	63	27	30
CDH10	0	genome.wustl.edu	37	5	24487827	24487827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	24487827	24487827	C	T	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.2312	p.R771Q	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				213	0	0	129	47	26.7045
PDZD2	0	genome.wustl.edu	37	5	31799307	31799307	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	31799307	31799307	C	T	SNP	PDZD2	ENST00000502824	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.944	-	-	-	no_errors	PDZD2	HGNC	ENSG00000133401				16	0	0	16	8	33.3333
TARS	0	genome.wustl.edu	37	5	33461072	33461072	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	33461072	33461072	T	C	SNP	TARS	ENST00000265112	human	ensembl	74_37	+1	known	missense	c.1316	p.V439A	1.000	pfam_aa-tRNA-synt_IIb_cons-dom,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS	HGNC	ENSG00000113407				98	0	0	67	13	16.25
SPEF2	0	genome.wustl.edu	37	5	35659271	35659271	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	35659271	35659271	C	T	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	nonsense	c.1129	p.R377*	1.000	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				54	0	0	36	10	21.7391
SLC9A3	0	genome.wustl.edu	37	5	477515	477515	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	477515	477515	G	A	SNP	SLC9A3	ENST00000264938	human	ensembl	74_37	-1	known	silent	c.1692	p.T564	0.005	prints_Na/H_exchanger_3/5,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,superfamily_Reg_factor_effector_dom,prints_Na/H_exchanger_3/5,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A3	HGNC	ENSG00000066230				56	0	0	53	10	15.873
ITGA2	0	genome.wustl.edu	37	5	52379218	52379218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	52379218	52379218	G	A	SNP	ITGA2	ENST00000296585	human	ensembl	74_37	+1	known	missense	c.3193	p.V1065I	0.995	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA2	HGNC	ENSG00000164171				59	0	0	33	13	28.2609
SKIV2L2	0	genome.wustl.edu	37	5	54711853	54711853	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	54711853	54711853	A	G	SNP	SKIV2L2	ENST00000230640	human	ensembl	74_37	+1	known	missense	c.2864	p.E955G	1.000	pfam_DSH_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123				40	0	0	20	7	25.9259
PPWD1	0	genome.wustl.edu	37	5	64865507	64865507	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	64865507	64865507	G	A	SNP	PPWD1	ENST00000261308	human	ensembl	74_37	+1	known	nonsense	c.348	p.W116*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_WD40_repeat,superfamily_Cyclophilin-like_PPIase_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PPWD1	HGNC	ENSG00000113593				43	0	0	32	10	23.8095
OCLN	0	genome.wustl.edu	37	5	68800096	68800096	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	68800096	68800096	C	T	SNP	OCLN	ENST00000355237	human	ensembl	74_37	+1	known	missense	c.25	p.P9S	1.000	pirsf_Occludin	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel,pirsf_Occludin,prints_Occludin	-	no_errors	OCLN	HGNC	ENSG00000197822				32	0	0	21	6	22.2222
BDP1	0	genome.wustl.edu	37	5	70785231	70785231	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	70785231	70785231	T	C	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	missense	c.1214	p.V405A	0.290	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				37	0	0	36	10	21.7391
BDP1	0	genome.wustl.edu	37	5	70811960	70811960	+	Silent	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	70811960	70811960	C	G	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	silent	c.4722	p.G1574	0.986	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				34	0	0	22	12	35.2941
MCCC2	0	genome.wustl.edu	37	5	70944923	70944923	+	Splice_Site	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	70944923	70944923	G	T	SNP	MCCC2	ENST00000340941	human	ensembl	74_37	+1	known	splice_site	c.1217-1	e14-1	1.000	-	-	-	no_errors	MCCC2	HGNC	ENSG00000131844				81	0	0	78	19	19.5876
ENC1	0	genome.wustl.edu	37	5	73931829	73931829	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	73931829	73931829	C	T	SNP	ENC1	ENST00000302351	human	ensembl	74_37	-1	known	missense	c.482	p.C161Y	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	ENC1	HGNC	ENSG00000171617				152	0	0	111	26	18.9781
THBS4	0	genome.wustl.edu	37	5	79375873	79375873	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	79375873	79375873	A	G	SNP	THBS4	ENST00000350881	human	ensembl	74_37	+1	known	missense	c.2657	p.Q886R	1.000	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl_sf	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296				41	0	0	28	11	28.2051
VCAN	0	genome.wustl.edu	37	5	82837118	82837118	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	82837118	82837118	T	C	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.8296	p.S2766P	1.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				101	0	0	49	20	28.9855
HAPLN1	0	genome.wustl.edu	37	5	82948392	82948392	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	82948392	82948392	T	G	SNP	HAPLN1	ENST00000274341	human	ensembl	74_37	-1	known	missense	c.352	p.S118R	0.997	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN1	HGNC	ENSG00000145681				179	0	0	80	27	25.2336
ENSG00000250320	0	genome.wustl.edu	37	5	83680285	83680285	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	83680285	83680285	G	A	SNP	ENSG00000250320	ENST00000514696	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.256	-	-	-	no_errors	CTD-2269F5.1	Clone_based_vega_gene	ENSG00000250320				24	0	0	14	10	41.6667
ZDHHC11	0	genome.wustl.edu	37	5	843740	843740	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	843740	843740	C	T	SNP	ZDHHC11	ENST00000283441	human	ensembl	74_37	-1	known	silent	c.603	p.V201	0.048	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818				85	0	0	74	13	14.9425
RGMB	0	genome.wustl.edu	37	5	98128867	98128867	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	98128867	98128867	G	A	SNP	RGMB	ENST00000308234	human	ensembl	74_37	+1	known	missense	c.847	p.A283T	1.000	pfam_RGM_C	pfam_RGM_C,pfam_RGM_N	-	no_errors	RGMB	HGNC	ENSG00000174136				35	0	0	47	5	9.61538
GCNT2	0	genome.wustl.edu	37	6	10586566	10586566	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	10586566	10586566	G	T	SNP	GCNT2	ENST00000265012	human	ensembl	74_37	+1	known	missense	c.344	p.R115M	0.997	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT2	HGNC	ENSG00000111846				94	0	0	52	17	24.6377
ZUFSP	0	genome.wustl.edu	37	6	116988046	116988046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	116988046	116988046	C	T	SNP	ZUFSP	ENST00000368576	human	ensembl	74_37	-1	known	missense	c.310	p.A104T	0.000	NULL	pfam_Peptidase_C78_UfSP1/2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZUFSP	HGNC	ENSG00000153975				69	0	0	45	14	23.7288
HIVEP1	0	genome.wustl.edu	37	6	12121648	12121648	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	12121648	12121648	T	A	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.1620	p.N540K	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				58	0	0	49	15	23.4375
TBC1D32	0	genome.wustl.edu	37	6	121642917	121642917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	121642917	121642917	C	T	SNP	TBC1D32	ENST00000464622	human	ensembl	74_37	-1	known	missense	c.179	p.R60K	0.999	NULL	NULL	-	no_errors	TBC1D32	HGNC	ENSG00000146350				110	0	0	71	21	22.8261
STL	0	genome.wustl.edu	37	6	125231453	125231453	+	RNA	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	125231453	125231453	C	A	SNP	STL	ENST00000439075	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	RP11-510H23.1	Clone_based_vega_gene	ENSG00000236548				26	0	0	17	11	39.2857
PRELID1P1	0	genome.wustl.edu	37	6	126965357	126965357	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	126965357	126965357	C	T	SNP	PRELID1P1	ENST00000567272	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRELID1P1	HGNC	ENSG00000217325				26	0	0	26	6	18.75
KIAA0408	0	genome.wustl.edu	37	6	127767709	127767709	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	127767709	127767709	C	T	SNP	KIAA0408	ENST00000483725	human	ensembl	74_37	-1	novel	silent	c.1755	p.Q585	0.699	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367				153	0	0	81	26	24.2991
MOXD1	0	genome.wustl.edu	37	6	132695778	132695778	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	132695778	132695778	T	G	SNP	MOXD1	ENST00000367963	human	ensembl	74_37	-1	known	missense	c.403	p.S135R	0.998	pfam_DOMON_domain,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931				85	0	0	41	25	37.8788
FOXF2	0	genome.wustl.edu	37	6	1390484	1390484	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	1390484	1390484	C	T	SNP	FOXF2	ENST00000259806	human	ensembl	74_37	+1	known	missense	c.302	p.P101L	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF2	HGNC	ENSG00000137273				37	0	0	22	14	38.8889
NMBR	0	genome.wustl.edu	37	6	142399736	142399736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	142399736	142399736	C	T	SNP	NMBR	ENST00000258042	human	ensembl	74_37	-1	known	missense	c.727	p.A243T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NeuroB_rcpt,prints_Bombsn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NMBR	HGNC	ENSG00000135577				60	0	0	44	12	21.4286
HIVEP2	0	genome.wustl.edu	37	6	143091558	143091558	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	143091558	143091558	G	A	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	nonsense	c.4318	p.R1440*	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				101	0	0	67	30	30.9278
PHACTR2	0	genome.wustl.edu	37	6	144128231	144128231	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	144128231	144128231	C	A	SNP	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	missense	c.1883	p.T628K	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419				39	0	0	28	12	30
PHACTR2	0	genome.wustl.edu	37	6	144144816	144144816	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	144144816	144144816	A	G	SNP	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	missense	c.1928	p.H643R	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419				75	0	0	39	16	29.0909
LATS1	0	genome.wustl.edu	37	6	150001447	150001447	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	150001447	150001447	G	A	SNP	LATS1	ENST00000253339	human	ensembl	74_37	-1	known	silent	c.2157	p.V719	0.996	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS1	HGNC	ENSG00000131023				121	0	0	102	13	11.3043
NUP43	0	genome.wustl.edu	37	6	150067127	150067127	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	150067127	150067127	G	A	SNP	NUP43	ENST00000340413	human	ensembl	74_37	-1	known	silent	c.192	p.D64	0.976	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NUP43	HGNC	ENSG00000120253				122	0	0	96	31	24.4094
SYNE1	0	genome.wustl.edu	37	6	152652598	152652598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	152652598	152652598	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.13222	p.A4408T	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				76	0	0	61	14	18.6667
OPRM1	0	genome.wustl.edu	37	6	154360655	154360655	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	154360655	154360655	C	T	SNP	OPRM1	ENST00000434900	human	ensembl	74_37	+1	known	silent	c.255	p.S85	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mu_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038				19	0	0	12	5	29.4118
JARID2	0	genome.wustl.edu	37	6	15513182	15513182	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	15513182	15513182	A	G	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.3172	p.M1058V	1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				276	0	0	171	61	26.2931
SLC22A1	0	genome.wustl.edu	37	6	160543354	160543354	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	160543354	160543354	G	A	SNP	SLC22A1	ENST00000366963	human	ensembl	74_37	+1	known	silent	c.387	p.T129	0.647	pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A1	HGNC	ENSG00000175003				80	0	0	55	19	25.6757
MAP3K4	0	genome.wustl.edu	37	6	161470396	161470396	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	161470396	161470396	A	G	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	missense	c.1092	p.I364M	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				77	0	0	56	19	25.3333
ATXN1	0	genome.wustl.edu	37	6	16327903	16327903	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	16327903	16327903	C	A	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	missense	c.639	p.Q213H	0.019	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				24	0	0	20	4	16.6667
ATXN1	0	genome.wustl.edu	37	6	16327915	16327915	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	16327915	16327915	A	C	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	missense	c.627	p.H209Q	0.017	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				27	0	0	24	4	14.2857
QKI	0	genome.wustl.edu	37	6	163984517	163984517	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	163984517	163984517	C	T	SNP	QKI	ENST00000361752	human	ensembl	74_37	+1	known	missense	c.700	p.P234S	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				62	0	0	40	16	28.5714
FRMD1	0	genome.wustl.edu	37	6	168467457	168467457	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	168467457	168467457	C	T	SNP	FRMD1	ENST00000283309	human	ensembl	74_37	-1	known	missense	c.439	p.V147M	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD1	HGNC	ENSG00000153303				73	0	0	55	18	24.6575
WDR27	0	genome.wustl.edu	37	6	170036601	170036601	+	Splice_Site	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	170036601	170036601	C	G	SNP	WDR27	ENST00000448612	human	ensembl	74_37	-1	known	splice_site	c.1870-1	e18-1	0.999	-	-	-	no_errors	WDR27	HGNC	ENSG00000184465				46	0	0	30	8	21.0526
FAM120B	0	genome.wustl.edu	37	6	170627688	170627688	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	170627688	170627688	T	C	SNP	FAM120B	ENST00000537664	human	ensembl	74_37	+1	known	missense	c.1279	p.C427R	0.005	NULL	NULL	-	no_errors	FAM120B	HGNC	ENSG00000112584				456	0	0	301	93	23.6041
GPLD1	0	genome.wustl.edu	37	6	24436912	24436912	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	24436912	24436912	C	T	SNP	GPLD1	ENST00000230036	human	ensembl	74_37	-1	known	silent	c.2250	p.L750	0.807	smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293				99	0	0	58	21	26.5823
HIST1H2AA	0	genome.wustl.edu	37	6	25726456	25726456	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	25726456	25726456	G	A	SNP	HIST1H2AA	ENST00000297012	human	ensembl	74_37	-1	known	silent	c.300	p.G100	0.151	superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AA	HGNC	ENSG00000164508				233	0	0	159	57	26.3889
BTN2A2	0	genome.wustl.edu	37	6	26385502	26385502	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	26385502	26385502	C	T	SNP	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	silent	c.354	p.N118	0.985	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508				81	0	0	55	27	32.9268
BTN2A1	0	genome.wustl.edu	37	6	26463679	26463679	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	26463679	26463679	C	A	SNP	BTN2A1	ENST00000312541	human	ensembl	74_37	+1	known	missense	c.638	p.S213Y	0.016	pfam_CD80_C2-set	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A1	HGNC	ENSG00000112763				202	0	0	150	58	27.8846
HLA-V	0	genome.wustl.edu	37	6	29760290	29760290	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	29760290	29760290	C	T	SNP	HLA-V	ENST00000446817	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	HLA-V	HGNC	ENSG00000181126				11	0	0	9	6	40
TRIM39	0	genome.wustl.edu	37	6	30297398	30297398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	30297398	30297398	C	T	SNP	TRIM39	ENST00000376656	human	ensembl	74_37	+1	known	missense	c.304	p.R102W	0.063	smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM39	HGNC	ENSG00000204599				86	0	0	47	23	32.8571
HLA-E	0	genome.wustl.edu	37	6	30459056	30459056	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	30459056	30459056	C	T	SNP	HLA-E	ENST00000376630	human	ensembl	74_37	+1	known	silent	c.753	p.L251	0.985	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-E	HGNC	ENSG00000204592				192	0	0	155	49	24.0196
DDR1	0	genome.wustl.edu	37	6	30858775	30858775	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	30858775	30858775	A	G	SNP	DDR1	ENST00000376575	human	ensembl	74_37	+1	known	missense	c.443	p.E148G	0.973	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580				91	0	0	69	23	25
APOM	0	genome.wustl.edu	37	6	31625431	31625431	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	31625431	31625431	G	A	SNP	APOM	ENST00000375916	human	ensembl	74_37	+1	known	missense	c.472	p.V158M	1.000	pfam_ApoM,superfamily_Calycin-like	pfam_ApoM,superfamily_Calycin-like	-	no_errors	APOM	HGNC	ENSG00000204444				249	0	0	154	56	26.6667
EHMT2	0	genome.wustl.edu	37	6	31848498	31848498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	31848498	31848498	C	T	SNP	EHMT2	ENST00000395728	human	ensembl	74_37	-1	known	missense	c.3575	p.R1192H	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371				92	0	0	76	23	23.2323
SKIV2L	0	genome.wustl.edu	37	6	31933701	31933701	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	31933701	31933701	G	T	SNP	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	missense	c.2113	p.G705W	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_C	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351				56	0	0	27	14	34.1463
TNXB	0	genome.wustl.edu	37	6	32024393	32024393	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	32024393	32024393	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.8113	p.V2705M	0.269	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				57	0	0	56	18	24.3243
TNXB	0	genome.wustl.edu	37	6	32035489	32035489	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	32035489	32035489	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.6493	p.G2165S	0.903	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				91	0	0	87	7	7.44681
TAP2	0	genome.wustl.edu	37	6	32797230	32797230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	32797230	32797230	C	T	SNP	TAP2	ENST00000374897	human	ensembl	74_37	-1	known	missense	c.1879	p.V627I	0.899	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Ag_transporter2	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_ABC_B3,prints_ABC_B2,tigrfam_Ag_transporter2	-	no_errors	TAP2	HGNC	ENSG00000204267				25	0	0	28	8	22.2222
RGL2	0	genome.wustl.edu	37	6	33264534	33264534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	33264534	33264534	C	T	SNP	RGL2	ENST00000497454	human	ensembl	74_37	-1	known	missense	c.260	p.R87H	0.982	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441				84	0	0	57	14	19.7183
TAPBP	0	genome.wustl.edu	37	6	33281536	33281536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	33281536	33281536	C	T	SNP	TAPBP	ENST00000426633	human	ensembl	74_37	-1	known	missense	c.143	p.R48H	1.000	NULL	pfam_Ig_C1-set,pfscan_Ig-like_dom,prints_Tapasin	-	no_errors	TAPBP	HGNC	ENSG00000231925				106	0	0	58	33	36.2637
ANKS1A	0	genome.wustl.edu	37	6	34953019	34953019	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	34953019	34953019	T	C	SNP	ANKS1A	ENST00000360359	human	ensembl	74_37	+1	known	silent	c.1173	p.A391	0.214	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999				116	0	0	77	28	26.6667
PI16	0	genome.wustl.edu	37	6	36927008	36927008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	36927008	36927008	G	A	SNP	PI16	ENST00000373674	human	ensembl	74_37	+1	known	missense	c.259	p.E87K	0.997	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI16	HGNC	ENSG00000164530				25	0	0	13	6	31.5789
DNAH8	0	genome.wustl.edu	37	6	38843448	38843448	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	38843448	38843448	G	A	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.7051	p.V2351M	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				86	0	0	57	21	26.9231
GPR116	0	genome.wustl.edu	37	6	46874435	46874435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	46874435	46874435	G	A	SNP	GPR116	ENST00000265417	human	ensembl	74_37	-1	known	missense	c.65	p.A22V	0.033	NULL	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122				90	0	0	73	22	23.1579
GPR110	0	genome.wustl.edu	37	6	46967871	46967871	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	46967871	46967871	G	A	SNP	GPR110	ENST00000449332	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GPR110	HGNC	ENSG00000153292				11	0	0	12	8	40
TNFRSF21	0	genome.wustl.edu	37	6	47221045	47221045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	47221045	47221045	G	A	SNP	TNFRSF21	ENST00000296861	human	ensembl	74_37	-1	known	missense	c.1456	p.R486W	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_21	-	no_errors	TNFRSF21	HGNC	ENSG00000146072				34	0	0	35	9	20.4545
TINAG	0	genome.wustl.edu	37	6	54208055	54208055	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	54208055	54208055	A	C	SNP	TINAG	ENST00000259782	human	ensembl	74_37	+1	known	missense	c.656	p.E219A	0.975	smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251				56	0	0	27	13	32.5
COL12A1	0	genome.wustl.edu	37	6	75798830	75798830	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	75798830	75798830	C	G	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.9002	p.G3001A	1.000	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				59	0	0	35	8	18.6047
BMP6	0	genome.wustl.edu	37	6	7727443	7727443	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	7727443	7727443	G	A	SNP	BMP6	ENST00000283147	human	ensembl	74_37	+1	known	silent	c.255	p.S85	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162				17	0	0	14	3	17.6471
TBX18	0	genome.wustl.edu	37	6	85472390	85472390	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	85472390	85472390	C	T	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	silent	c.369	p.A123	0.002	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				75	0	0	51	14	21.5385
ZNF292	0	genome.wustl.edu	37	6	87970632	87970632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	87970632	87970632	C	T	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	missense	c.7285	p.R2429W	0.985	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				19	0	0	11	3	21.4286
CNR1	0	genome.wustl.edu	37	6	88854674	88854674	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	88854674	88854674	C	A	SNP	CNR1	ENST00000369499	human	ensembl	74_37	-1	known	missense	c.320	p.C107F	1.000	pirsf_Canbinoid_rcpt_1,prints_Cnbnoid_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pirsf_Canbinoid_rcpt_1,pfscan_GPCR_Rhodpsn_7TM,prints_Canbinoid_rcpt_1,prints_Cnbnoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CNR1	HGNC	ENSG00000118432				75	0	0	65	20	23.5294
GABRR2	0	genome.wustl.edu	37	6	90024932	90024932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	90024932	90024932	C	T	SNP	GABRR2	ENST00000602399	human	ensembl	74_37	-1	known	missense	c.28	p.A10T	0.000	NULL	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho2_rcpt,prints_GABAAa_rho_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRR2	HGNC	ENSG00000111886				318	0	0	271	30	9.96678
ANKRD6	0	genome.wustl.edu	37	6	90312801	90312801	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	90312801	90312801	C	T	SNP	ANKRD6	ENST00000339746	human	ensembl	74_37	+1	known	silent	c.273	p.I91	0.076	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD6	HGNC	ENSG00000135299				16	0	0	18	5	21.7391
MDN1	0	genome.wustl.edu	37	6	90396626	90396626	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	90396626	90396626	T	C	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.11567	p.Q3856R	0.963	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				166	0	0	92	37	28.6822
MDN1	0	genome.wustl.edu	37	6	90449993	90449993	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	90449993	90449993	A	G	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.4553	p.L1518P	0.997	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				100	0	0	47	15	24.1935
ZAN	0	genome.wustl.edu	37	7	100377177	100377177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	100377177	100377177	G	A	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	missense	c.6424	p.A2142T	0.002	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				25	0	0	15	7	31.8182
MUC17	0	genome.wustl.edu	37	7	100684572	100684572	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	100684572	100684572	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.9875	p.T3292M	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				780	0	0	478	150	23.8854
TRIM56	0	genome.wustl.edu	37	7	100732838	100732838	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	100732838	100732838	C	T	SNP	TRIM56	ENST00000306085	human	ensembl	74_37	+1	known	missense	c.2245	p.R749W	0.989	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_CheY-like_superfamily,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM56	HGNC	ENSG00000169871				57	0	0	42	13	23.6364
RELN	0	genome.wustl.edu	37	7	103243938	103243938	+	Splice_Site	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	103243938	103243938	C	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	splice_site	c.3147-1	e24-1	1.000	-	-	-	no_errors	RELN	HGNC	ENSG00000189056				83	0	0	59	14	19.1781
LAMB1	0	genome.wustl.edu	37	7	107566694	107566694	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	107566694	107566694	G	T	SNP	LAMB1	ENST00000222399	human	ensembl	74_37	-1	known	silent	c.4998	p.S1666	0.166	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,superfamily_P-loop_NTPase,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136				95	0	0	62	17	21.519
LRRN3	0	genome.wustl.edu	37	7	110763653	110763653	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	110763653	110763653	A	G	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	missense	c.825	p.I275M	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				73	0	0	46	14	23.3333
DOCK4	0	genome.wustl.edu	37	7	111368395	111368395	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	111368395	111368395	C	A	SNP	DOCK4	ENST00000428084	human	ensembl	74_37	-1	known	missense	c.5863	p.G1955W	0.997	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512				40	0	0	34	4	10.5263
ZNF277	0	genome.wustl.edu	37	7	111958267	111958267	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	111958267	111958267	C	T	SNP	ZNF277	ENST00000361822	human	ensembl	74_37	+1	known	nonsense	c.496	p.R166*	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF277	HGNC	ENSG00000198839				49	0	0	46	8	14.8148
THSD7A	0	genome.wustl.edu	37	7	11676525	11676525	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	11676525	11676525	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	nonsense	c.254	p.W85*	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				133	0	0	91	25	21.5517
CPED1	0	genome.wustl.edu	37	7	120884391	120884391	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	120884391	120884391	A	G	SNP	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	missense	c.2309	p.K770R	1.000	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				75	0	0	50	5	9.09091
WNT16	0	genome.wustl.edu	37	7	120979305	120979305	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	120979305	120979305	G	T	SNP	WNT16	ENST00000222462	human	ensembl	74_37	+1	known	missense	c.1004	p.R335M	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745				81	0	0	81	23	22.1154
PTPRZ1	0	genome.wustl.edu	37	7	121652619	121652619	+	Silent	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	121652619	121652619	A	C	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	silent	c.3519	p.S1173	0.994	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				196	0	0	159	53	25
IQUB	0	genome.wustl.edu	37	7	123101557	123101557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	123101557	123101557	G	A	SNP	IQUB	ENST00000324698	human	ensembl	74_37	-1	known	missense	c.1861	p.R621C	0.002	NULL	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675				68	0	0	41	8	16.3265
FLNC	0	genome.wustl.edu	37	7	128488744	128488744	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	128488744	128488744	C	T	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	silent	c.4710	p.G1570	0.014	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				215	0	0	153	66	30.137
PLXNA4	0	genome.wustl.edu	37	7	132193357	132193357	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	132193357	132193357	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	silent	c.96	p.P32	0.000	pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				34	0	0	28	12	30
SLC13A4	0	genome.wustl.edu	37	7	135376308	135376308	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	135376308	135376308	T	C	SNP	SLC13A4	ENST00000354042	human	ensembl	74_37	-1	known	missense	c.1306	p.K436E	0.997	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707				55	0	0	43	11	20.3704
CHRM2	0	genome.wustl.edu	37	7	136700051	136700051	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	136700051	136700051	G	A	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	missense	c.439	p.A147T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072				139	0	0	62	31	33.3333
TRIM24	0	genome.wustl.edu	37	7	138145955	138145955	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	138145955	138145955	G	A	SNP	TRIM24	ENST00000497516	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM24	HGNC	ENSG00000122779				43	0	0	27	13	32.5
PARP12	0	genome.wustl.edu	37	7	139746769	139746769	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	139746769	139746769	A	G	SNP	PARP12	ENST00000263549	human	ensembl	74_37	-1	known	missense	c.901	p.W301R	1.000	pfscan_WWE-dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Znf_CCCH,smart_Znf_CCCH,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP12	HGNC	ENSG00000059378				54	0	0	51	21	29.1667
DENND2A	0	genome.wustl.edu	37	7	140267037	140267037	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	140267037	140267037	A	G	SNP	DENND2A	ENST00000275884	human	ensembl	74_37	-1	known	missense	c.1628	p.L543P	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2A	HGNC	ENSG00000146966				34	0	0	21	12	36.3636
BRAF	0	genome.wustl.edu	37	7	140434475	140434475	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	140434475	140434475	C	A	SNP	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	missense	c.2223	p.E741D	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				230	0	0	121	58	32.4022
MGAM	0	genome.wustl.edu	37	7	141708379	141708379	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	141708379	141708379	C	T	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	silent	c.201	p.T67	0.000	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				43	0	0	29	19	39.5833
EPHB6	0	genome.wustl.edu	37	7	142561892	142561892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	142561892	142561892	C	T	SNP	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	missense	c.334	p.R112W	0.999	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				217	0	0	157	46	22.6601
EPHB6	0	genome.wustl.edu	37	7	142562206	142562206	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	142562206	142562206	G	A	SNP	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	silent	c.648	p.T216	0.001	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				221	1	0.45045	196	57	22.5296
KEL	0	genome.wustl.edu	37	7	142651349	142651349	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	142651349	142651349	C	A	SNP	KEL	ENST00000355265	human	ensembl	74_37	-1	known	silent	c.846	p.L282	0.053	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993				71	0	0	61	13	17.5676
GSTK1	0	genome.wustl.edu	37	7	142962174	142962174	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	142962174	142962174	G	A	SNP	GSTK1	ENST00000479303	human	ensembl	74_37	+1	known	missense	c.373	p.V125I	0.015	pfam_DSBA-like_thioredoxin_dom,superfamily_Thioredoxin-like_fold	pfam_DSBA-like_thioredoxin_dom,superfamily_Thioredoxin-like_fold	-	no_errors	GSTK1	HGNC	ENSG00000197448				50	0	0	64	7	9.85915
TAS2R41	0	genome.wustl.edu	37	7	143175662	143175662	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	143175662	143175662	C	A	SNP	TAS2R41	ENST00000408916	human	ensembl	74_37	+1	known	missense	c.697	p.L233M	0.990	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R41	HGNC	ENSG00000221855				81	0	0	74	20	21.2766
CNTNAP2	0	genome.wustl.edu	37	7	147092722	147092722	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	147092722	147092722	A	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.1520	p.N507I	0.972	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				159	0	0	114	42	26.9231
SLC4A2	0	genome.wustl.edu	37	7	150765012	150765012	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	150765012	150765012	T	A	SNP	SLC4A2	ENST00000413384	human	ensembl	74_37	+1	known	missense	c.1018	p.W340R	1.000	superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889				77	0	0	34	12	26.087
WDR86	0	genome.wustl.edu	37	7	151093229	151093229	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	151093229	151093229	C	T	SNP	WDR86	ENST00000469830	human	ensembl	74_37	-1	putative	missense	c.359	p.R120Q	0.996	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR86	HGNC	ENSG00000187260				84	0	0	58	27	31.7647
GALNT11	0	genome.wustl.edu	37	7	151805283	151805283	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	151805283	151805283	C	T	SNP	GALNT11	ENST00000320311	human	ensembl	74_37	+1	known	silent	c.873	p.R291	0.051	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234				112	0	0	84	35	29.4118
DPP6	0	genome.wustl.edu	37	7	154667692	154667692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	154667692	154667692	G	A	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	missense	c.1960	p.G654S	0.581	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				29	0	0	20	8	28.5714
ENSG00000224903	0	genome.wustl.edu	37	7	156450184	156450184	+	RNA	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	156450184	156450184	T	C	SNP	ENSG00000224903	ENST00000455709	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC005534.8	Clone_based_vega_gene	ENSG00000224903				98	0	0	54	21	28
MNX1	0	genome.wustl.edu	37	7	156802962	156802962	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	156802962	156802962	A	G	SNP	MNX1	ENST00000252971	human	ensembl	74_37	-1	known	missense	c.83	p.L28P	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MNX1	HGNC	ENSG00000130675				8	0	0	9	3	25
NUPL2	0	genome.wustl.edu	37	7	23235487	23235487	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	23235487	23235487	A	G	SNP	NUPL2	ENST00000258742	human	ensembl	74_37	+1	known	missense	c.475	p.R159G	1.000	NULL	smart_Znf_CCCH	-	no_errors	NUPL2	HGNC	ENSG00000136243				49	0	0	28	5	15.1515
HOXA9	0	genome.wustl.edu	37	7	27204803	27204803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	27204803	27204803	C	T	SNP	HOXA9	ENST00000343483	human	ensembl	74_37	-1	known	missense	c.274	p.V92M	1.000	pfam_Hox9_activation_N,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Hox9,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA9	HGNC	ENSG00000078399				22	0	0	13	11	45.8333
CARD11	0	genome.wustl.edu	37	7	2949685	2949685	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	2949685	2949685	T	C	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	missense	c.3259	p.R1087G	1.000	superfamily_P-loop_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				121	0	0	52	71	57.7236
DPY19L2P1	0	genome.wustl.edu	37	7	35131521	35131521	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	35131521	35131521	G	A	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				61	0	0	70	6	7.89474
DPY19L2P1	0	genome.wustl.edu	37	7	35131548	35131548	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	35131548	35131548	G	A	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				51	0	0	66	9	12
EPDR1	0	genome.wustl.edu	37	7	37960482	37960482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	37960482	37960482	G	A	SNP	EPDR1	ENST00000559325	human	ensembl	74_37	+1	known	missense	c.301	p.G101R	0.001	NULL	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289				43	0	0	25	11	30.5556
C7orf10	0	genome.wustl.edu	37	7	40900112	40900112	+	RNA	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	40900112	40900112	C	A	SNP	C7orf10	ENST00000464028	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C7orf10	HGNC	ENSG00000175600				41	0	0	30	14	31.8182
ZMIZ2	0	genome.wustl.edu	37	7	44804020	44804020	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	44804020	44804020	C	T	SNP	ZMIZ2	ENST00000309315	human	ensembl	74_37	+1	known	silent	c.1863	p.C621	1.000	pfam_Znf_MIZ,pfscan_Znf_MIZ	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ2	HGNC	ENSG00000122515				63	0	0	47	15	24.1935
MYO1G	0	genome.wustl.edu	37	7	45006354	45006354	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	45006354	45006354	G	A	SNP	MYO1G	ENST00000258787	human	ensembl	74_37	-1	known	silent	c.1866	p.V622	0.613	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO1G	HGNC	ENSG00000136286				236	0	0	185	55	22.9167
POM121L12	0	genome.wustl.edu	37	7	53103741	53103741	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	53103741	53103741	G	T	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	missense	c.377	p.R126L	0.007	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900				74	0	0	61	22	26.506
SEPT14	0	genome.wustl.edu	37	7	55914312	55914312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	55914312	55914312	G	A	SNP	SEPT14	ENST00000388975	human	ensembl	74_37	-1	known	missense	c.73	p.R25C	0.039	NULL	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT14	HGNC	ENSG00000154997				60	0	0	46	11	19.2982
ENSG00000236299	0	genome.wustl.edu	37	7	63353552	63353552	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	63353552	63353552	C	T	SNP	ENSG00000236299	ENST00000433918	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.126	-	-	-	no_errors	RP11-340I6.7	Clone_based_vega_gene	ENSG00000236299				12	0	0	11	8	42.1053
DAGLB	0	genome.wustl.edu	37	7	6474614	6474614	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	6474614	6474614	T	C	SNP	DAGLB	ENST00000297056	human	ensembl	74_37	-1	known	missense	c.457	p.I153V	0.251	NULL	pfam_Lipase_3	-	no_errors	DAGLB	HGNC	ENSG00000164535				128	0	0	98	32	24.6154
ASL	0	genome.wustl.edu	37	7	65557610	65557610	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	65557610	65557610	G	A	SNP	ASL	ENST00000304874	human	ensembl	74_37	+1	known	missense	c.1210	p.A404T	0.098	superfamily_L-Aspartase-like,tigrfam_Argininosuccinate_lyase	pfam_Fumarate_lyase_N,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Argininosuccinate_lyase	-	no_errors	ASL	HGNC	ENSG00000126522				127	0	0	120	50	29.4118
ENSG00000230189	0	genome.wustl.edu	37	7	65915083	65915083	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	65915083	65915083	C	T	SNP	ENSG00000230189	ENST00000442578	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	GS1-124K5.2	Clone_based_vega_gene	ENSG00000230189				49	0	0	30	6	16.6667
POM121	0	genome.wustl.edu	37	7	72412827	72412827	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	72412827	72412827	C	T	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	silent	c.2295	p.S765	0.005	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313				24	0	0	18	10	35.7143
POM121C	0	genome.wustl.edu	37	7	75052388	75052388	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	75052388	75052388	G	T	SNP	POM121C	ENST00000257665	human	ensembl	74_37	-1	known	missense	c.1873	p.L625I	0.021	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213				20	0	0	13	4	23.5294
POR	0	genome.wustl.edu	37	7	75611608	75611608	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	75611608	75611608	G	T	SNP	POR	ENST00000461988	human	ensembl	74_37	+1	known	missense	c.798	p.M266I	1.000	superfamily_Riboflavin_synthase-like_b-brl	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	POR	HGNC	ENSG00000127948				24	0	0	24	2	7.69231
ZP3	0	genome.wustl.edu	37	7	76071311	76071311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	76071311	76071311	G	A	SNP	ZP3	ENST00000394857	human	ensembl	74_37	+1	known	missense	c.1213	p.V405I	0.000	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP3	HGNC	ENSG00000188372				24	0	0	19	9	32.1429
PTPN12	0	genome.wustl.edu	37	7	77236553	77236553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	77236553	77236553	G	A	SNP	PTPN12	ENST00000248594	human	ensembl	74_37	+1	known	missense	c.697	p.A233T	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Ptpn_12,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Ptpn_12,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947				69	0	0	49	16	24.6154
PHTF2	0	genome.wustl.edu	37	7	77569913	77569913	+	Silent	SNP	T	T	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	77569913	77569913	T	A	SNP	PHTF2	ENST00000248550	human	ensembl	74_37	+1	known	silent	c.1809	p.P603	0.969	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF2	HGNC	ENSG00000006576				86	0	0	61	18	22.7848
PCLO	0	genome.wustl.edu	37	7	82583831	82583831	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	82583831	82583831	T	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.6438	p.V2146	0.768	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				58	0	0	50	6	10.7143
PCLO	0	genome.wustl.edu	37	7	82784516	82784516	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	82784516	82784516	G	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.1441	p.P481T	0.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				176	0	0	120	45	27.2727
GRM3	0	genome.wustl.edu	37	7	86416293	86416293	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	86416293	86416293	C	T	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	silent	c.1185	p.N395	0.949	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				164	0	0	126	37	22.6994
RUNDC3B	0	genome.wustl.edu	37	7	87329769	87329769	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	87329769	87329769	C	T	SNP	RUNDC3B	ENST00000338056	human	ensembl	74_37	+1	known	missense	c.322	p.R108C	1.000	pfam_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784				50	0	0	23	5	17.8571
DLX5	0	genome.wustl.edu	37	7	96653787	96653787	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	96653787	96653787	G	A	SNP	DLX5	ENST00000222598	human	ensembl	74_37	-1	known	missense	c.149	p.P50L	0.998	pfam_Distal-less_N	pfam_Distal-less_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX5	HGNC	ENSG00000105880				91	0	0	104	12	10.3448
TECPR1	0	genome.wustl.edu	37	7	97860431	97860431	+	Splice_Site	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	97860431	97860431	C	T	SNP	TECPR1	ENST00000379795	human	ensembl	74_37	-1	known	splice_site	c.2128-1	e13-1	1.000	-	-	-	no_errors	TECPR1	HGNC	ENSG00000205356				25	0	0	17	3	15
BUD31	0	genome.wustl.edu	37	7	99015149	99015149	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	99015149	99015149	C	T	SNP	BUD31	ENST00000222969	human	ensembl	74_37	+1	known	silent	c.315	p.C105	1.000	pfam_G10,prints_G10	pfam_G10,prints_G10	-	no_errors	BUD31	HGNC	ENSG00000106245				82	0	0	41	21	33.871
VPS13B	0	genome.wustl.edu	37	8	100654346	100654346	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	100654346	100654346	A	T	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.5603	p.E1868V	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				73	0	0	74	20	21.2766
UBR5	0	genome.wustl.edu	37	8	103340002	103340002	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	103340002	103340002	G	T	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	silent	c.1449	p.T483	1.000	superfamily_RCC1/BLIP-II	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				87	0	0	83	24	22.4299
ABRA	0	genome.wustl.edu	37	8	107782296	107782296	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	107782296	107782296	G	A	SNP	ABRA	ENST00000311955	human	ensembl	74_37	-1	known	silent	c.123	p.S41	0.035	NULL	NULL	-	no_errors	ABRA	HGNC	ENSG00000174429				123	0	0	136	42	23.5955
EBAG9	0	genome.wustl.edu	37	8	110563098	110563098	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	110563098	110563098	A	G	SNP	EBAG9	ENST00000337573	human	ensembl	74_37	+1	known	silent	c.45	p.L15	0.996	pirsf_Cancer-assoc_antigen_RCAS1	pirsf_Cancer-assoc_antigen_RCAS1	-	no_errors	EBAG9	HGNC	ENSG00000147654				18	0	0	10	4	28.5714
EBAG9	0	genome.wustl.edu	37	8	110576774	110576774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	110576774	110576774	G	A	SNP	EBAG9	ENST00000337573	human	ensembl	74_37	+1	known	missense	c.628	p.V210M	1.000	pirsf_Cancer-assoc_antigen_RCAS1	pirsf_Cancer-assoc_antigen_RCAS1	-	no_errors	EBAG9	HGNC	ENSG00000147654				72	0	0	84	17	16.8317
CSMD3	0	genome.wustl.edu	37	8	113267603	113267603	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	113267603	113267603	T	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.9916	p.S3306G	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				67	0	0	46	12	20.6897
CSMD3	0	genome.wustl.edu	37	8	113988083	113988083	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	113988083	113988083	G	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.1325	p.A442E	1.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				118	0	0	141	22	13.4969
BLK	0	genome.wustl.edu	37	8	11420558	11420558	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	11420558	11420558	C	T	SNP	BLK	ENST00000259089	human	ensembl	74_37	+1	known	silent	c.1251	p.D417	0.792	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573				136	0	0	185	27	12.7358
TRPS1	0	genome.wustl.edu	37	8	116426634	116426634	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	116426634	116426634	C	A	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.3502	p.A1168S	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				55	0	0	45	13	22.4138
USP17L2	0	genome.wustl.edu	37	8	11995172	11995172	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	11995172	11995172	C	A	SNP	USP17L2	ENST00000333796	human	ensembl	74_37	-1	known	missense	c.1098	p.Q366H	0.989	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_HABP4_PAIRBP1-bd,pfscan_Peptidase_C19/C67	-	no_errors	USP17L2	HGNC	ENSG00000223443				105	0	0	84	15	15.1515
TAF2	0	genome.wustl.edu	37	8	120844797	120844797	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	120844797	120844797	A	G	SNP	TAF2	ENST00000378164	human	ensembl	74_37	-1	known	missense	c.8	p.L3P	0.851	NULL	pfam_Peptidase_M1_N,superfamily_ARM-type_fold	-	no_errors	TAF2	HGNC	ENSG00000064313				65	0	0	86	27	23.8938
ENSG00000238460	0	genome.wustl.edu	37	8	12435612	12435612	+	RNA	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	12435612	12435612	A	C	SNP	ENSG00000238460	ENST00000458954	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.016	-	-	-	no_errors	AC068587.2	Clone_based_ensembl_gene	ENSG00000238460				415	0	0	331	38	10.2981
TATDN1	0	genome.wustl.edu	37	8	125506109	125506109	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	125506109	125506109	G	A	SNP	TATDN1	ENST00000276692	human	ensembl	74_37	-1	known	silent	c.756	p.H252	0.958	pfam_TatD_family,pirsf_TatD_family	pfam_TatD_family,pirsf_TatD_family	-	no_errors	TATDN1	HGNC	ENSG00000147687				143	0	0	111	19	14.6154
KIAA0196	0	genome.wustl.edu	37	8	126091168	126091168	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	126091168	126091168	C	T	SNP	KIAA0196	ENST00000318410	human	ensembl	74_37	-1	known	missense	c.523	p.A175T	1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961				91	0	0	72	25	25.7732
DLC1	0	genome.wustl.edu	37	8	12943849	12943849	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	12943849	12943849	G	T	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	silent	c.4416	p.P1472	1.000	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				124	0	0	116	28	19.4444
DLC1	0	genome.wustl.edu	37	8	12957883	12957883	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	12957883	12957883	C	A	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.1963	p.G655C	0.972	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				170	0	0	163	25	13.2979
ADCY8	0	genome.wustl.edu	37	8	132051792	132051792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	132051792	132051792	C	T	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.788	p.G263D	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				56	0	0	64	15	18.9873
WISP1	0	genome.wustl.edu	37	8	134225301	134225301	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	134225301	134225301	G	A	SNP	WISP1	ENST00000250160	human	ensembl	74_37	+1	known	silent	c.264	p.T88	0.163	pfam_IGFBP-like,smart_IGFBP-like,pirsf_IGFBP_CNN	pfam_IGFBP-like,pfam_VWF_C,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP1	HGNC	ENSG00000104415				76	0	0	118	25	17.4825
TRAPPC9	0	genome.wustl.edu	37	8	141461251	141461251	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	141461251	141461251	G	A	SNP	TRAPPC9	ENST00000389328	human	ensembl	74_37	-1	known	silent	c.516	p.H172	1.000	NULL	pfam_TRAPP_II_complex_Trs120	-	no_errors	TRAPPC9	HGNC	ENSG00000167632				105	0	0	92	25	21.3675
AGO2	0	genome.wustl.edu	37	8	141561443	141561443	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	141561443	141561443	C	T	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	silent	c.1362	p.A454	0.086	NULL	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				156	0	0	179	43	19.3694
BAI1	0	genome.wustl.edu	37	8	143603466	143603466	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	143603466	143603466	C	T	SNP	BAI1	ENST00000323289	human	ensembl	74_37	+1	known	silent	c.3165	p.C1055	1.000	pfam_GPCR_2_secretin-like,prints_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790				72	0	0	71	17	19.3182
C8orf31	0	genome.wustl.edu	37	8	144126111	144126111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	144126111	144126111	G	A	SNP	C8orf31	ENST00000395172	human	ensembl	74_37	+1	known	missense	c.232	p.A78T	0.000	NULL	NULL	-	no_errors	C8orf31	HGNC	ENSG00000177335				77	0	0	61	16	20.7792
FAM83H	0	genome.wustl.edu	37	8	144811445	144811445	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	144811445	144811445	C	T	SNP	FAM83H	ENST00000388913	human	ensembl	74_37	-1	known	missense	c.496	p.E166K	0.996	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83H	HGNC	ENSG00000180921				107	0	0	119	35	22.7273
SCRIB	0	genome.wustl.edu	37	8	144892734	144892734	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	144892734	144892734	T	C	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.1445	p.K482R	1.000	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				252	1	0.395257	296	64	17.7778
EPPK1	0	genome.wustl.edu	37	8	144944631	144944631	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	144944631	144944631	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	missense	c.2791	p.A931T	0.000	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				52	0	0	35	8	18.6047
PLEC	0	genome.wustl.edu	37	8	144992277	144992277	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	144992277	144992277	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.12123	p.D4041	0.845	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				24	0	0	22	7	24.1379
OPLAH	0	genome.wustl.edu	37	8	145112396	145112396	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	145112396	145112396	G	A	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	silent	c.1377	p.R459	0.936	pfam_Hydantoinase_A	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				21	0	0	18	4	18.1818
SCRT1	0	genome.wustl.edu	37	8	145556953	145556953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	145556953	145556953	G	A	SNP	SCRT1	ENST00000332135	human	ensembl	74_37	-1	known	missense	c.941	p.A314V	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SCRT1	HGNC	ENSG00000170616				37	0	0	29	12	29.2683
SCRT1	0	genome.wustl.edu	37	8	145557181	145557181	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	145557181	145557181	G	A	SNP	SCRT1	ENST00000332135	human	ensembl	74_37	-1	known	missense	c.713	p.A238V	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SCRT1	HGNC	ENSG00000170616				26	0	0	22	14	38.8889
SLC52A2	0	genome.wustl.edu	37	8	145583308	145583308	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	145583308	145583308	T	C	SNP	SLC52A2	ENST00000329994	human	ensembl	74_37	+1	known	silent	c.156	p.S52	0.763	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A2	HGNC	ENSG00000185803				253	0	0	237	54	18.5567
ZNF7	0	genome.wustl.edu	37	8	146067086	146067086	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	146067086	146067086	C	T	SNP	ZNF7	ENST00000325241	human	ensembl	74_37	+1	known	silent	c.594	p.C198	0.008	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF7	HGNC	ENSG00000147789				112	0	0	106	21	16.5354
ZNF16	0	genome.wustl.edu	37	8	146156297	146156297	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	146156297	146156297	C	T	SNP	ZNF16	ENST00000276816	human	ensembl	74_37	-1	known	missense	c.1876	p.E626K	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF16	HGNC	ENSG00000170631				119	0	0	105	26	19.8473
MICU3	0	genome.wustl.edu	37	8	16971623	16971623	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	16971623	16971623	A	G	SNP	MICU3	ENST00000318063	human	ensembl	74_37	+1	known	missense	c.1279	p.R427G	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MICU3	HGNC	ENSG00000155970				47	0	0	56	8	12.5
CLN8	0	genome.wustl.edu	37	8	1719304	1719304	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	1719304	1719304	G	T	SNP	CLN8	ENST00000331222	human	ensembl	74_37	+1	known	missense	c.84	p.M28I	0.000	NULL	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	CLN8	HGNC	ENSG00000182372				124	0	0	125	34	21.3836
MTUS1	0	genome.wustl.edu	37	8	17612040	17612040	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	17612040	17612040	A	G	SNP	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	missense	c.1277	p.M426T	0.000	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422				139	0	0	118	32	21.3333
PSD3	0	genome.wustl.edu	37	8	18432748	18432748	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	18432748	18432748	G	A	SNP	PSD3	ENST00000440756	human	ensembl	74_37	-1	known	silent	c.2535	p.N845	0.874	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	PSD3	HGNC	ENSG00000156011				91	0	0	78	17	17.8947
ARHGEF10	0	genome.wustl.edu	37	8	1905204	1905204	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	1905204	1905204	C	T	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	silent	c.3885	p.S1295	0.147	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				125	0	0	175	18	9.32642
MYOM2	0	genome.wustl.edu	37	8	2046748	2046748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	2046748	2046748	G	A	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	missense	c.2375	p.G792D	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				24	0	0	37	7	15.9091
XPO7	0	genome.wustl.edu	37	8	21840178	21840178	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	21840178	21840178	C	T	SNP	XPO7	ENST00000434536	human	ensembl	74_37	+1	known	missense	c.1159	p.H387Y	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227				86	0	0	95	27	22.1311
FGF17	0	genome.wustl.edu	37	8	21903771	21903771	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	21903771	21903771	C	A	SNP	FGF17	ENST00000359441	human	ensembl	74_37	+1	known	silent	c.219	p.I73	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF17	HGNC	ENSG00000158815				106	0	0	95	24	20.1681
FGF17	0	genome.wustl.edu	37	8	21905606	21905606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	21905606	21905606	G	A	SNP	FGF17	ENST00000359441	human	ensembl	74_37	+1	known	missense	c.497	p.R166H	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF17	HGNC	ENSG00000158815				36	0	0	36	8	18.1818
SLC39A14	0	genome.wustl.edu	37	8	22265945	22265945	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	22265945	22265945	C	A	SNP	SLC39A14	ENST00000359741	human	ensembl	74_37	+1	known	silent	c.393	p.T131	0.146	NULL	pfam_ZIP	-	no_errors	SLC39A14	HGNC	ENSG00000104635				107	0	0	116	31	21.0884
EGR3	0	genome.wustl.edu	37	8	22548215	22548215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	22548215	22548215	C	T	SNP	EGR3	ENST00000317216	human	ensembl	74_37	-1	known	missense	c.935	p.R312Q	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR3	HGNC	ENSG00000179388				153	0	0	163	35	17.6768
RHOBTB2	0	genome.wustl.edu	37	8	22864426	22864426	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	22864426	22864426	A	G	SNP	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	missense	c.668	p.N223S	0.997	NULL	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				182	0	0	208	56	21.2121
NKX3-1	0	genome.wustl.edu	37	8	23539062	23539062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	23539062	23539062	C	T	SNP	NKX3-1	ENST00000380871	human	ensembl	74_37	-1	known	missense	c.377	p.R126H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX3-1	HGNC	ENSG00000167034				185	0	0	199	63	24.0458
NEFL	0	genome.wustl.edu	37	8	24811209	24811209	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	24811209	24811209	A	G	SNP	NEFL	ENST00000221169	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725				106	0	0	94	32	25.3968
NEFL	0	genome.wustl.edu	37	8	24813312	24813312	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	24813312	24813312	A	G	SNP	NEFL	ENST00000221169	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NEFL	HGNC	ENSG00000104725				35	0	0	48	9	15.7895
CDCA2	0	genome.wustl.edu	37	8	25323706	25323706	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	25323706	25323706	T	C	SNP	CDCA2	ENST00000330560	human	ensembl	74_37	+1	known	missense	c.403	p.Y135H	0.174	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661				60	0	0	53	10	15.873
PPP2R2A	0	genome.wustl.edu	37	8	26227792	26227792	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	26227792	26227792	C	T	SNP	PPP2R2A	ENST00000380737	human	ensembl	74_37	+1	known	nonsense	c.1207	p.R403*	1.000	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2A	HGNC	ENSG00000221914				56	0	0	46	9	16.3636
TRIM35	0	genome.wustl.edu	37	8	27145134	27145134	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	27145134	27145134	G	A	SNP	TRIM35	ENST00000305364	human	ensembl	74_37	-1	known	missense	c.1415	p.A472V	0.004	superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM35	HGNC	ENSG00000104228				24	0	0	17	8	32
EXTL3	0	genome.wustl.edu	37	8	28575242	28575242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	28575242	28575242	C	T	SNP	EXTL3	ENST00000220562	human	ensembl	74_37	+1	known	missense	c.1666	p.R556C	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232				105	0	0	101	25	19.8413
FUT10	0	genome.wustl.edu	37	8	33247281	33247281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	33247281	33247281	G	A	SNP	FUT10	ENST00000327671	human	ensembl	74_37	-1	known	missense	c.412	p.R138W	1.000	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	-	no_errors	FUT10	HGNC	ENSG00000172728				85	0	0	85	19	18.2692
KCNU1	0	genome.wustl.edu	37	8	36780117	36780117	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	36780117	36780117	C	T	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	silent	c.2706	p.S902	0.036	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				50	0	0	50	12	19.3548
ASH2L	0	genome.wustl.edu	37	8	37974227	37974227	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	37974227	37974227	T	C	SNP	ASH2L	ENST00000343823	human	ensembl	74_37	+1	known	silent	c.837	p.T279	0.934	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	-	no_errors	ASH2L	HGNC	ENSG00000129691				49	0	0	51	5	8.92857
PLEKHA2	0	genome.wustl.edu	37	8	38809830	38809830	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	38809830	38809830	G	T	SNP	PLEKHA2	ENST00000420274	human	ensembl	74_37	+1	known	silent	c.633	p.V211	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA2	HGNC	ENSG00000169499				25	0	0	26	6	18.75
ADAM2	0	genome.wustl.edu	37	8	39644523	39644523	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	39644523	39644523	A	G	SNP	ADAM2	ENST00000265708	human	ensembl	74_37	-1	known	silent	c.861	p.C287	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM2	HGNC	ENSG00000104755				58	0	0	57	11	16.1765
SFRP1	0	genome.wustl.edu	37	8	41166419	41166419	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	41166419	41166419	A	G	SNP	SFRP1	ENST00000220772	human	ensembl	74_37	-1	known	missense	c.260	p.M87T	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP1	HGNC	ENSG00000104332				27	0	0	34	11	24.4444
ANK1	0	genome.wustl.edu	37	8	41551449	41551449	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	41551449	41551449	T	C	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.3499	p.T1167A	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				26	0	0	33	8	19.5122
IKBKB	0	genome.wustl.edu	37	8	42151029	42151029	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	42151029	42151029	T	C	SNP	IKBKB	ENST00000520810	human	ensembl	74_37	+1	known	silent	c.387	p.I129	0.855	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365				85	0	0	78	18	18.75
HOOK3	0	genome.wustl.edu	37	8	42819545	42819545	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	42819545	42819545	C	A	SNP	HOOK3	ENST00000307602	human	ensembl	74_37	+1	known	missense	c.707	p.P236H	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172				83	0	0	71	13	15.4762
HGSNAT	0	genome.wustl.edu	37	8	43037356	43037356	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	43037356	43037356	G	A	SNP	HGSNAT	ENST00000458501	human	ensembl	74_37	+1	known	missense	c.1165	p.V389M	0.170	pfam_DUF1624	pfam_DUF1624	-	no_errors	HGSNAT	HGNC	ENSG00000165102				471	2	0.422833	395	91	18.7243
SNAI2	0	genome.wustl.edu	37	8	49832848	49832848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	49832848	49832848	C	T	SNP	SNAI2	ENST00000020945	human	ensembl	74_37	-1	known	missense	c.232	p.G78R	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI2	HGNC	ENSG00000019549				167	0	0	159	32	16.7539
TCEA1	0	genome.wustl.edu	37	8	54900776	54900776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	54900776	54900776	C	T	SNP	TCEA1	ENST00000521604	human	ensembl	74_37	-1	known	missense	c.364	p.A122T	0.996	superfamily_TFIIS_cen_dom,pirsf_TF_IIS-rel,tigrfam_TFSII	pfam_TFIIS_cen_dom,pfam_Znf_TFIIS,pfam_TFIIS_N,superfamily_TFIIS_cen_dom,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_TFS2M,smart_Znf_TFIIS,pirsf_TF_IIS-rel,pfscan_Znf_TFIIS,tigrfam_TFSII	-	no_errors	TCEA1	HGNC	ENSG00000187735				25	0	0	28	9	24.3243
XKR4	0	genome.wustl.edu	37	8	56436612	56436612	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	56436612	56436612	A	G	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	silent	c.1779	p.S593	0.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				123	0	0	123	40	24.5399
CHD7	0	genome.wustl.edu	37	8	61757811	61757811	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	61757811	61757811	T	C	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	silent	c.5053	p.L1685	0.965	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				61	0	0	71	25	26.0417
PPP1R42	0	genome.wustl.edu	37	8	67900734	67900734	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	67900734	67900734	T	G	SNP	PPP1R42	ENST00000522909	human	ensembl	74_37	-1	known	missense	c.571	p.N191H	0.881	NULL	pfam_Leu-rich_rpt	-	no_errors	PPP1R42	HGNC	ENSG00000178125				29	0	0	26	4	13.3333
CSPP1	0	genome.wustl.edu	37	8	68007920	68007920	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	68007920	68007920	T	C	SNP	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	silent	c.903	p.Y301	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				45	0	0	47	13	21.6667
C8orf34	0	genome.wustl.edu	37	8	69358682	69358682	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	69358682	69358682	G	A	SNP	C8orf34	ENST00000518698	human	ensembl	74_37	+1	known	silent	c.594	p.P198	0.933	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084				50	0	0	38	5	11.6279
SULF1	0	genome.wustl.edu	37	8	70515459	70515459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	70515459	70515459	C	T	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	missense	c.1094	p.A365V	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				229	0	0	236	59	20
SLCO5A1	0	genome.wustl.edu	37	8	70744002	70744002	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	70744002	70744002	C	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	74_37	-1	known	missense	c.907	p.A303T	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571				109	0	0	93	18	16.2162
EYA1	0	genome.wustl.edu	37	8	72127929	72127929	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	72127929	72127929	C	A	SNP	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	silent	c.1395	p.L465	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				70	0	0	75	15	16.6667
JPH1	0	genome.wustl.edu	37	8	75233296	75233296	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	75233296	75233296	G	A	SNP	JPH1	ENST00000342232	human	ensembl	74_37	-1	known	missense	c.227	p.T76M	1.000	pfam_MORN,smart_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH1	HGNC	ENSG00000104369				66	0	0	66	25	27.4725
ZFHX4	0	genome.wustl.edu	37	8	77765070	77765070	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	77765070	77765070	A	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.5913	p.Q1971H	0.999	superfamily_Adenylate_cyclase-assoc_CAP_N,pfscan_Znf_C2H2	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				55	0	0	51	18	26.087
ZFHX4	0	genome.wustl.edu	37	8	77767659	77767659	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	77767659	77767659	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	silent	c.8502	p.K2834	0.849	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				50	0	0	44	15	25.4237
SGK223	0	genome.wustl.edu	37	8	8176630	8176630	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	8176630	8176630	G	A	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	silent	c.3255	p.C1085	0.979	smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				111	0	0	124	29	18.9542
LRRCC1	0	genome.wustl.edu	37	8	86049698	86049698	+	Splice_Site	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	86049698	86049698	G	T	SNP	LRRCC1	ENST00000360375	human	ensembl	74_37	+1	known	splice_site	c.2330-1	e15-1	1.000	-	-	-	no_errors	LRRCC1	HGNC	ENSG00000133739				32	0	0	52	9	14.7541
CA1	0	genome.wustl.edu	37	8	86253877	86253877	+	RNA	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	86253877	86253877	A	G	SNP	CA1	ENST00000518341	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.245	-	-	-	no_errors	CA1	HGNC	ENSG00000133742				42	0	0	43	6	12.2449
RMDN1	0	genome.wustl.edu	37	8	87487047	87487047	+	Splice_Site	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	87487047	87487047	A	G	SNP	RMDN1	ENST00000406452	human	ensembl	74_37	-1	known	splice_site	c.894+2	e9+2	1.000	-	-	-	no_errors	RMDN1	HGNC	ENSG00000176623				108	0	0	91	5	5.20833
PPP1R3B	0	genome.wustl.edu	37	8	8998651	8998651	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	8998651	8998651	T	G	SNP	PPP1R3B	ENST00000310455	human	ensembl	74_37	-1	known	missense	c.511	p.S171R	1.000	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3B	HGNC	ENSG00000173281				183	0	0	182	45	19.8238
RIPK2	0	genome.wustl.edu	37	8	90770378	90770378	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	90770378	90770378	C	T	SNP	RIPK2	ENST00000220751	human	ensembl	74_37	+1	known	silent	c.90	p.G30	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rcpt-int_Ser/Thr_kinase-2,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CARD,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rcpt-int_Ser/Thr_kinase-2,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_CARD,pfscan_Prot_kinase_dom	-	no_errors	RIPK2	HGNC	ENSG00000104312				24	0	0	17	4	19.0476
SLC26A7	0	genome.wustl.edu	37	8	92365208	92365208	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	92365208	92365208	T	C	SNP	SLC26A7	ENST00000309536	human	ensembl	74_37	+1	known	missense	c.1298	p.V433A	1.000	pfam_Sulph_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A7	HGNC	ENSG00000147606				68	0	0	63	9	12.5
RUNX1T1	0	genome.wustl.edu	37	8	92983012	92983012	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	92983012	92983012	C	T	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	silent	c.1446	p.A482	0.012	prints_ETO	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102				71	0	0	68	26	27.6596
RBM12B	0	genome.wustl.edu	37	8	94746566	94746566	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	94746566	94746566	C	T	SNP	RBM12B	ENST00000399300	human	ensembl	74_37	-1	known	nonsense	c.2073	p.W691*	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12B	HGNC	ENSG00000183808				294	0	0	352	79	18.3295
TNKS	0	genome.wustl.edu	37	8	9622250	9622250	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	9622250	9622250	A	G	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	missense	c.3397	p.R1133G	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				75	0	0	60	8	11.7647
TSPYL5	0	genome.wustl.edu	37	8	98290066	98290066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	98290066	98290066	C	T	SNP	TSPYL5	ENST00000322128	human	ensembl	74_37	-1	known	missense	c.7	p.G3S	1.000	NULL	pfam_NAP_family	-	no_errors	TSPYL5	HGNC	ENSG00000180543				20	0	0	16	5	23.8095
POP1	0	genome.wustl.edu	37	8	99170031	99170031	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	99170031	99170031	C	T	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	silent	c.2607	p.P869	0.000	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				99	0	0	109	18	14.1732
ABCA1	0	genome.wustl.edu	37	9	107571802	107571802	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	107571802	107571802	C	T	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	missense	c.4219	p.A1407T	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				69	0	0	54	15	21.7391
ZNF462	0	genome.wustl.edu	37	9	109690810	109690810	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	109690810	109690810	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	silent	c.4617	p.P1539	0.629	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				51	0	0	50	16	24.2424
ZNF462	0	genome.wustl.edu	37	9	109773180	109773180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	109773180	109773180	C	T	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.7570	p.P2524S	0.832	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				48	0	0	28	7	20
KLF4	0	genome.wustl.edu	37	9	110250473	110250473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	110250473	110250473	C	T	SNP	KLF4	ENST00000374672	human	ensembl	74_37	-1	known	missense	c.202	p.A68T	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF4	HGNC	ENSG00000136826				43	0	0	38	8	17.3913
PALM2	0	genome.wustl.edu	37	9	112705624	112705624	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	112705624	112705624	A	C	SNP	PALM2	ENST00000448454	human	ensembl	74_37	+1	known	missense	c.1161	p.E387D	1.000	pfam_Paralemmin	pfam_Paralemmin	-	no_errors	PALM2	HGNC	ENSG00000243444				111	0	0	115	11	8.73016
TXN	0	genome.wustl.edu	37	9	113013693	113013693	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	113013693	113013693	A	G	SNP	TXN	ENST00000374517	human	ensembl	74_37	-1	known	missense	c.74	p.V25A	1.000	pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	TXN	HGNC	ENSG00000136810				61	0	0	37	17	31.4815
SVEP1	0	genome.wustl.edu	37	9	113141745	113141745	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	113141745	113141745	T	C	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	silent	c.10290	p.V3430	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				40	0	0	25	8	24.2424
ZNF483	0	genome.wustl.edu	37	9	114304767	114304767	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	114304767	114304767	A	G	SNP	ZNF483	ENST00000309235	human	ensembl	74_37	+1	known	missense	c.1552	p.T518A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258				57	0	0	39	12	23.5294
C9orf84	0	genome.wustl.edu	37	9	114453907	114453907	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	114453907	114453907	T	C	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	silent	c.4158	p.Q1386	0.952	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				56	0	0	27	11	28.9474
ZFP37	0	genome.wustl.edu	37	9	115805377	115805377	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	115805377	115805377	A	G	SNP	ZFP37	ENST00000553380	human	ensembl	74_37	-1	known	silent	c.1566	p.H522	0.953	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866				50	0	0	46	15	24.5902
BRINP1	0	genome.wustl.edu	37	9	121929807	121929807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	121929807	121929807	G	A	SNP	BRINP1	ENST00000265922	human	ensembl	74_37	-1	known	missense	c.1841	p.T614M	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP1	HGNC	ENSG00000078725				190	0	0	139	42	23.2044
CRB2	0	genome.wustl.edu	37	9	126133621	126133621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	126133621	126133621	G	A	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	missense	c.2200	p.G734R	0.001	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204				148	0	0	114	43	27.3885
CRB2	0	genome.wustl.edu	37	9	126134595	126134595	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	126134595	126134595	G	A	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	missense	c.2576	p.C859Y	1.000	superfamily_ConA-like_lec_gl_sf	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204				121	1	0.819672	82	32	28.0702
PPP6C	0	genome.wustl.edu	37	9	127911967	127911967	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	127911967	127911967	C	T	SNP	PPP6C	ENST00000451402	human	ensembl	74_37	-1	known	silent	c.1014	p.T338	1.000	NULL	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP6C	HGNC	ENSG00000119414				95	0	0	40	13	24.5283
ZBTB43	0	genome.wustl.edu	37	9	129596068	129596068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	129596068	129596068	C	T	SNP	ZBTB43	ENST00000373457	human	ensembl	74_37	+1	known	missense	c.1280	p.P427L	1.000	pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB43	HGNC	ENSG00000169155				198	0	0	129	43	25
FPGS	0	genome.wustl.edu	37	9	130571113	130571113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	130571113	130571113	C	T	SNP	FPGS	ENST00000373228	human	ensembl	74_37	+1	known	missense	c.857	p.S286F	0.000	NULL	superfamily_Mur_ligase_cen,tigrfam_Folylpolyglutamate_synth	-	no_errors	FPGS	HGNC	ENSG00000136877				10	0	0	3	3	50
NAIF1	0	genome.wustl.edu	37	9	130829050	130829050	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	130829050	130829050	C	T	SNP	NAIF1	ENST00000373078	human	ensembl	74_37	-1	known	missense	c.331	p.G111S	0.625	NULL	NULL	-	no_errors	NAIF1	HGNC	ENSG00000171169				102	0	0	75	22	22.6804
SLC25A25	0	genome.wustl.edu	37	9	130868770	130868770	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	130868770	130868770	T	C	SNP	SLC25A25	ENST00000373069	human	ensembl	74_37	+1	known	missense	c.1183	p.Y395H	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Graves_DC	-	no_errors	SLC25A25	HGNC	ENSG00000148339				157	0	0	109	43	28.2895
CIZ1	0	genome.wustl.edu	37	9	130941148	130941148	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	130941148	130941148	C	A	SNP	CIZ1	ENST00000538431	human	ensembl	74_37	-1	known	missense	c.1338	p.Q446H	0.004	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,pfscan_Znf_C2H2_matrin	-	no_errors	CIZ1	HGNC	ENSG00000148337				208	0	0	173	62	26.383
DNM1	0	genome.wustl.edu	37	9	130984785	130984785	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	130984785	130984785	C	T	SNP	DNM1	ENST00000372923	human	ensembl	74_37	+1	known	silent	c.1038	p.G346	0.999	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM1	HGNC	ENSG00000106976				137	0	0	93	37	28.4615
PPP2R4	0	genome.wustl.edu	37	9	131885369	131885369	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	131885369	131885369	C	T	SNP	PPP2R4	ENST00000452489	human	ensembl	74_37	+1	known	silent	c.168	p.N56	0.922	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	pfam_Phstyr_phstse_ac,pirsf_Phstyr_phstse_ac	-	no_errors	PPP2R4	HGNC	ENSG00000119383				215	0	0	173	51	22.7679
LAMC3	0	genome.wustl.edu	37	9	133901811	133901811	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	133901811	133901811	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.513	p.Y171	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				92	0	0	76	23	23.2323
GTF3C4	0	genome.wustl.edu	37	9	135553584	135553584	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	135553584	135553584	T	C	SNP	GTF3C4	ENST00000372146	human	ensembl	74_37	+1	known	missense	c.578	p.I193T	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484				90	0	0	69	31	31
AK8	0	genome.wustl.edu	37	9	135739050	135739050	+	Splice_Site	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	135739050	135739050	A	G	SNP	AK8	ENST00000298545	human	ensembl	74_37	-1	known	splice_site	c.333+2	e4+2	1.000	-	-	-	no_errors	AK8	HGNC	ENSG00000165695				27	0	0	27	5	15.625
ADAMTSL2	0	genome.wustl.edu	37	9	136406014	136406014	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	136406014	136406014	C	T	SNP	ADAMTSL2	ENST00000393061	human	ensembl	74_37	+1	known	silent	c.900	p.D300	0.999	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859				54	0	0	41	12	22.6415
SARDH	0	genome.wustl.edu	37	9	136594912	136594912	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	136594912	136594912	A	G	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	missense	c.890	p.V297A	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				92	0	0	79	23	22.549
PPP1R26	0	genome.wustl.edu	37	9	138377333	138377333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	138377333	138377333	G	A	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	missense	c.977	p.R326H	0.000	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				124	0	0	92	25	21.3675
C9orf116	0	genome.wustl.edu	37	9	138387292	138387292	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	138387292	138387292	C	A	SNP	C9orf116	ENST00000429260	human	ensembl	74_37	-1	known	missense	c.392	p.R131M	0.000	NULL	NULL	-	no_errors	C9orf116	HGNC	ENSG00000160345				102	0	0	69	30	30.303
NOTCH1	0	genome.wustl.edu	37	9	139400304	139400304	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	139400304	139400304	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	silent	c.4044	p.D1348	0.952	smart_EGF-like_Ca-bd_dom,pirsf_Notch,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				21	0	0	21	6	22.2222
AGPAT2	0	genome.wustl.edu	37	9	139571443	139571443	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	139571443	139571443	G	A	SNP	AGPAT2	ENST00000371696	human	ensembl	74_37	-1	known	silent	c.462	p.A154	0.161	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,tigrfam_AGP_acyltrans	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,tigrfam_AGP_acyltrans	-	no_errors	AGPAT2	HGNC	ENSG00000169692				164	0	0	101	38	27.3381
FAM69B	0	genome.wustl.edu	37	9	139617494	139617494	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	139617494	139617494	G	A	SNP	FAM69B	ENST00000371692	human	ensembl	74_37	+1	known	silent	c.564	p.R188	0.995	NULL	pfam_FAM69_kinase_dom	-	no_errors	FAM69B	HGNC	ENSG00000165716				63	0	0	51	19	27.1429
RABL6	0	genome.wustl.edu	37	9	139726255	139726255	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	139726255	139726255	G	A	SNP	RABL6	ENST00000371663	human	ensembl	74_37	+1	known	missense	c.541	p.G181S	1.000	superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RABL6	HGNC	ENSG00000196642				41	0	0	53	21	28.3784
FBXW5	0	genome.wustl.edu	37	9	139836927	139836927	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	139836927	139836927	G	A	SNP	FBXW5	ENST00000483559	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FBXW5	HGNC	ENSG00000159069				49	0	0	46	27	36.9863
ABCA2	0	genome.wustl.edu	37	9	139910762	139910762	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	139910762	139910762	C	T	SNP	ABCA2	ENST00000265662	human	ensembl	74_37	-1	known	missense	c.3085	p.A1029T	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331				55	0	0	36	17	32.0755
GRIN1	0	genome.wustl.edu	37	9	140055866	140055866	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	140055866	140055866	C	T	SNP	GRIN1	ENST00000371561	human	ensembl	74_37	+1	known	missense	c.1465	p.R489W	1.000	pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_CaM-bd_C0_NMDA_rcpt_NR1,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN1	HGNC	ENSG00000176884				45	0	0	21	4	16
SLC34A3	0	genome.wustl.edu	37	9	140127764	140127764	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	140127764	140127764	C	T	SNP	SLC34A3	ENST00000361134	human	ensembl	74_37	+1	known	silent	c.664	p.L222	0.459	tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A3	HGNC	ENSG00000198569				12	0	0	10	7	41.1765
FAM166A	0	genome.wustl.edu	37	9	140140252	140140252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	140140252	140140252	C	T	SNP	FAM166A	ENST00000344774	human	ensembl	74_37	-1	known	missense	c.110	p.R37H	0.995	pfam_UPF0573/UPF0605	pfam_UPF0573/UPF0605	-	no_errors	FAM166A	HGNC	ENSG00000188163				57	0	0	51	13	20.3125
PNPLA7	0	genome.wustl.edu	37	9	140400150	140400150	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	140400150	140400150	G	A	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	silent	c.1389	p.H463	0.000	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				207	0	0	115	50	30.303
PNPLA7	0	genome.wustl.edu	37	9	140416106	140416106	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	140416106	140416106	G	T	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	silent	c.939	p.T313	1.000	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				87	0	0	81	15	15.625
ARRDC1	0	genome.wustl.edu	37	9	140508231	140508231	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	140508231	140508231	G	A	SNP	ARRDC1	ENST00000466367	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	ARRDC1	HGNC	ENSG00000197070				151	0	0	116	32	21.6216
EHMT1	0	genome.wustl.edu	37	9	140611266	140611266	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	140611266	140611266	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	missense	c.274	p.A92T	0.084	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				129	0	0	96	36	27.2727
CACNA1B	0	genome.wustl.edu	37	9	141016165	141016165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	141016165	141016165	G	A	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.6737	p.S2246N	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				84	0	0	60	25	29.4118
CBWD1	0	genome.wustl.edu	37	9	164038	164038	+	Splice_Site	SNP	C	C	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	164038	164038	C	G	SNP	CBWD1	ENST00000356521	human	ensembl	74_37	-1	known	splice_site	c.431-1	e5-1	1.000	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785				101	0	0	115	9	7.25806
BNC2	0	genome.wustl.edu	37	9	16435650	16435650	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	16435650	16435650	C	T	SNP	BNC2	ENST00000380672	human	ensembl	74_37	-1	known	missense	c.2542	p.V848M	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068				60	0	0	55	22	28.5714
ADAMTSL1	0	genome.wustl.edu	37	9	18504860	18504860	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	18504860	18504860	G	A	SNP	ADAMTSL1	ENST00000327883	human	ensembl	74_37	+1	known	missense	c.97	p.D33N	1.000	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_ADAM_spacer1,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				128	0	0	87	26	23.0088
PTENP1	0	genome.wustl.edu	37	9	33675379	33675379	+	RNA	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	33675379	33675379	C	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				22	0	0	28	3	9.67742
KIAA1161	0	genome.wustl.edu	37	9	34372511	34372511	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	34372511	34372511	T	C	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	missense	c.329	p.H110R	1.000	NULL	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976				21	0	0	13	8	38.0952
MELK	0	genome.wustl.edu	37	9	36657290	36657290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	36657290	36657290	C	T	SNP	MELK	ENST00000298048	human	ensembl	74_37	+1	known	missense	c.1106	p.A369V	0.716	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MELK	HGNC	ENSG00000165304				32	0	0	26	12	31.5789
FRMPD1	0	genome.wustl.edu	37	9	37745147	37745147	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	37745147	37745147	G	T	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	missense	c.3118	p.D1040Y	0.888	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				214	0	0	153	53	25.7282
TRMT10B	0	genome.wustl.edu	37	9	37763751	37763751	+	Splice_Site	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	37763751	37763751	G	A	SNP	TRMT10B	ENST00000297994	human	ensembl	74_37	+1	known	splice_site	c.420+1	e3+1	1.000	-	-	-	no_errors	TRMT10B	HGNC	ENSG00000165275				72	0	0	44	18	29.0323
GLIS3	0	genome.wustl.edu	37	9	4117878	4117878	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	4117878	4117878	A	G	SNP	GLIS3	ENST00000381971	human	ensembl	74_37	-1	known	missense	c.1600	p.F534L	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS3	HGNC	ENSG00000107249				131	0	0	133	12	8.27586
DOCK8	0	genome.wustl.edu	37	9	429834	429834	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	429834	429834	T	C	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	missense	c.4606	p.F1536L	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				47	0	0	44	20	31.25
SPATA6L	0	genome.wustl.edu	37	9	4635321	4635321	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	4635321	4635321	G	T	SNP	SPATA6L	ENST00000454239	human	ensembl	74_37	-1	known	missense	c.305	p.P102H	0.017	NULL	NULL	-	no_errors	SPATA6L	HGNC	ENSG00000106686				54	0	0	42	12	22.2222
PPAPDC2	0	genome.wustl.edu	37	9	4663138	4663138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	4663138	4663138	C	T	SNP	PPAPDC2	ENST00000381883	human	ensembl	74_37	+1	known	missense	c.763	p.R255W	0.977	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAPDC2	HGNC	ENSG00000205808				98	0	0	62	22	26.1905
INSL4	0	genome.wustl.edu	37	9	5233697	5233697	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	5233697	5233697	T	C	SNP	INSL4	ENST00000239316	human	ensembl	74_37	+1	known	silent	c.240	p.G80	0.000	superfamily_Insulin-like,prints_Relaxin	superfamily_Insulin-like,prints_Placentin,prints_Relaxin	-	no_errors	INSL4	HGNC	ENSG00000120211				48	0	0	29	18	38.2979
APBA1	0	genome.wustl.edu	37	9	72067157	72067157	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	72067157	72067157	T	C	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	missense	c.1849	p.R617G	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				113	0	0	82	27	24.7706
APBA1	0	genome.wustl.edu	37	9	72082837	72082837	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	72082837	72082837	C	T	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	missense	c.1384	p.A462T	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				269	0	0	201	70	25.8303
SMC5	0	genome.wustl.edu	37	9	72901115	72901115	+	Splice_Site	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	72901115	72901115	G	T	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	splice_site	c.982-1	e8-1	1.000	-	-	-	no_errors	SMC5	HGNC	ENSG00000198887				59	0	0	49	15	23.4375
GDA	0	genome.wustl.edu	37	9	74817603	74817603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	74817603	74817603	C	T	SNP	GDA	ENST00000238018	human	ensembl	74_37	+1	known	missense	c.329	p.A110V	0.148	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	pfam_Amidohydro_1,tigrfam_Guanine_deaminase	-	no_errors	GDA	HGNC	ENSG00000119125				190	0	0	130	45	25.7143
PCSK5	0	genome.wustl.edu	37	9	78911728	78911728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	78911728	78911728	G	A	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	missense	c.3470	p.R1157H	0.000	smart_Furin_repeat,smart_EG-like_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				170	0	0	98	43	30.4965
PSAT1	0	genome.wustl.edu	37	9	80943978	80943978	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	80943978	80943978	A	T	SNP	PSAT1	ENST00000376588	human	ensembl	74_37	+1	known	missense	c.1089	p.K363N	0.022	superfamily_PyrdxlP-dep_Trfase,pirsf_Pser_aminoTfrase,tigrfam_Pser_aminoTfrase_subgr	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,pirsf_Pser_aminoTfrase,tigrfam_Pser_aminoTfrase_subgr	-	no_errors	PSAT1	HGNC	ENSG00000135069				96	0	0	53	20	27.3973
PTPRD	0	genome.wustl.edu	37	9	8341229	8341229	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	8341229	8341229	T	C	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	missense	c.4987	p.S1663G	1.000	smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				171	0	0	102	32	23.8806
GAS1	0	genome.wustl.edu	37	9	89560829	89560829	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	89560829	89560829	C	T	SNP	GAS1	ENST00000298743	human	ensembl	74_37	-1	known	missense	c.866	p.G289D	0.998	NULL	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GAS1	HGNC	ENSG00000180447				13	0	0	5	3	37.5
DAPK1	0	genome.wustl.edu	37	9	90317955	90317955	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	90317955	90317955	C	T	SNP	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	silent	c.2958	p.P986	0.140	NULL	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				109	0	0	73	22	23.1579
DAPK1	0	genome.wustl.edu	37	9	90321386	90321386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	90321386	90321386	G	A	SNP	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	missense	c.3475	p.V1159M	0.996	NULL	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				57	0	0	49	12	19.6721
ENSG00000237743	0	genome.wustl.edu	37	9	90452061	90452061	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	90452061	90452061	G	A	SNP	ENSG00000237743	ENST00000415441	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	XXyac-YM21GA2.6	Clone_based_vega_gene	ENSG00000237743				14	0	0	19	7	26.9231
SEMA4D	0	genome.wustl.edu	37	9	92006233	92006233	+	Silent	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	92006233	92006233	C	A	SNP	SEMA4D	ENST00000356444	human	ensembl	74_37	-1	known	silent	c.720	p.V240	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764				111	0	0	85	32	27.3504
IARS	0	genome.wustl.edu	37	9	95033316	95033316	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	95033316	95033316	G	A	SNP	IARS	ENST00000375643	human	ensembl	74_37	-1	known	nonsense	c.1156	p.R386*	1.000	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS	HGNC	ENSG00000196305				135	0	0	79	26	24.7619
HABP4	0	genome.wustl.edu	37	9	99220764	99220764	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	99220764	99220764	C	A	SNP	HABP4	ENST00000375249	human	ensembl	74_37	+1	known	nonsense	c.453	p.Y151*	0.685	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	HABP4	HGNC	ENSG00000130956				98	0	0	88	31	26.0504
TIMM8A	0	genome.wustl.edu	37	X	100601606	100601606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	100601606	100601606	C	T	SNP	TIMM8A	ENST00000372902	human	ensembl	74_37	-1	known	missense	c.175	p.A59T	1.000	pfam_Tim10/DDP_fam_Znf,superfamily_Tim10/DDP_fam_Znf	pfam_Tim10/DDP_fam_Znf,superfamily_Tim10/DDP_fam_Znf	-	no_errors	TIMM8A	HGNC	ENSG00000126953				150	0	0	134	9	6.29371
FRMPD3	0	genome.wustl.edu	37	X	106844186	106844186	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	106844186	106844186	G	T	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	missense	c.3016	p.G1006C	0.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234				19	0	0	6	7	53.8462
COL4A5	0	genome.wustl.edu	37	X	107867516	107867516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	107867516	107867516	C	T	SNP	COL4A5	ENST00000328300	human	ensembl	74_37	+1	known	missense	c.2968	p.P990S	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153				18	0	0	8	10	55.5556
ARHGAP6	0	genome.wustl.edu	37	X	11162014	11162014	+	Silent	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	11162014	11162014	G	T	SNP	ARHGAP6	ENST00000380718	human	ensembl	74_37	-1	known	silent	c.2262	p.T754	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP6	HGNC	ENSG00000047648				150	0	0	79	90	53.2544
AMOT	0	genome.wustl.edu	37	X	112054536	112054536	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	112054536	112054536	A	G	SNP	AMOT	ENST00000371959	human	ensembl	74_37	-1	known	missense	c.1478	p.M493T	1.000	superfamily_Prefoldin,prints_Angiomotin	pfam_Angiomotin_C,superfamily_Prefoldin,prints_Angiomotin	-	no_errors	AMOT	HGNC	ENSG00000126016				137	0	0	59	57	49.1379
TENM1	0	genome.wustl.edu	37	X	123519752	123519752	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	123519752	123519752	T	C	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.5851	p.T1951A	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				94	0	0	36	50	58.1395
HS6ST2	0	genome.wustl.edu	37	X	131762868	131762868	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	131762868	131762868	C	A	SNP	HS6ST2	ENST00000521489	human	ensembl	74_37	-1	known	missense	c.1321	p.G441C	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST2	HGNC	ENSG00000171004				61	0	0	39	24	38.0952
GPC3	0	genome.wustl.edu	37	X	132888179	132888179	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	132888179	132888179	T	C	SNP	GPC3	ENST00000394299	human	ensembl	74_37	-1	known	missense	c.362	p.H121R	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC3	HGNC	ENSG00000147257				68	0	0	26	30	53.5714
GPR112	0	genome.wustl.edu	37	X	135431510	135431510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	135431510	135431510	C	T	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.5645	p.S1882F	0.022	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				87	0	0	62	6	8.82353
ARHGEF6	0	genome.wustl.edu	37	X	135763009	135763009	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	135763009	135763009	G	T	SNP	ARHGEF6	ENST00000250617	human	ensembl	74_37	-1	known	missense	c.1585	p.H529N	0.993	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675				68	0	0	77	12	13.4831
MAGEC3	0	genome.wustl.edu	37	X	140953268	140953268	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	140953268	140953268	G	T	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	missense	c.135	p.K45N	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509				43	0	0	27	20	42.5532
IDS	0	genome.wustl.edu	37	X	148579680	148579680	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	148579680	148579680	G	A	SNP	IDS	ENST00000340855	human	ensembl	74_37	-1	known	silent	c.666	p.A222	0.999	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404				76	0	0	32	32	50
SRPK3	0	genome.wustl.edu	37	X	153050931	153050931	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	153050931	153050931	G	A	SNP	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	missense	c.1660	p.A554T	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343				88	0	0	61	52	46.0177
PDZD4	0	genome.wustl.edu	37	X	153073928	153073928	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	153073928	153073928	G	A	SNP	PDZD4	ENST00000164640	human	ensembl	74_37	-1	known	silent	c.183	p.S61	0.876	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840				27	0	0	18	14	43.75
HCFC1	0	genome.wustl.edu	37	X	153220508	153220508	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	153220508	153220508	C	T	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	silent	c.3342	p.T1114	0.662	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				22	0	0	12	16	57.1429
FLNA	0	genome.wustl.edu	37	X	153587361	153587361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	153587361	153587361	C	T	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.4465	p.G1489R	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				147	0	0	67	69	50.7353
AKAP17A	0	genome.wustl.edu	37	X	1712646	1712646	+	Silent	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	1712646	1712646	C	T	SNP	AKAP17A	ENST00000313871	human	ensembl	74_37	+1	known	silent	c.291	p.D97	1.000	NULL	NULL	-	no_errors	AKAP17A	HGNC	ENSG00000197976				340	1	0.293255	254	81	24.1791
DDX53	0	genome.wustl.edu	37	X	23018779	23018779	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	23018779	23018779	A	G	SNP	DDX53	ENST00000327968	human	ensembl	74_37	+1	known	missense	c.605	p.N202S	0.108	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,superfamily_P-loop_NTPase,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX53	HGNC	ENSG00000184735				80	0	0	32	20	38.4615
PRDX4	0	genome.wustl.edu	37	X	23685738	23685738	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	23685738	23685738	C	A	SNP	PRDX4	ENST00000379341	human	ensembl	74_37	+1	known	missense	c.51	p.H17Q	0.001	NULL	pfam_AhpC/TSA,pfam_Peroxiredoxin_C,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX4	HGNC	ENSG00000123131				12	0	0	0	3	100
DMD	0	genome.wustl.edu	37	X	32383293	32383293	+	Silent	SNP	T	T	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	32383293	32383293	T	C	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	silent	c.4869	p.K1623	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				31	0	0	19	19	50
DMD	0	genome.wustl.edu	37	X	32481581	32481581	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	32481581	32481581	G	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.3407	p.T1136N	0.061	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				13	0	0	5	6	54.5455
GAGE1	0	genome.wustl.edu	37	X	49369669	49369669	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	49369669	49369669	C	A	SNP	GAGE1	ENST00000381709	human	ensembl	74_37	+1	known	missense	c.400	p.L134I	0.007	NULL	pfam_GAGE	-	no_errors	GAGE1	HGNC	ENSG00000205777				47	0	0	20	14	41.1765
AKAP4	0	genome.wustl.edu	37	X	49958701	49958701	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	49958701	49958701	G	A	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	silent	c.663	p.V221	1.000	pfam_RII_binding_1,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081				98	0	0	48	54	52.9412
AKAP4	0	genome.wustl.edu	37	X	49962241	49962241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	49962241	49962241	C	T	SNP	AKAP4	ENST00000358526	human	ensembl	74_37	-1	known	missense	c.128	p.C43Y	1.000	smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081				24	0	0	4	11	73.3333
DGKK	0	genome.wustl.edu	37	X	50213598	50213598	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	50213598	50213598	G	A	SNP	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466				10	0	0	5	6	54.5455
SHROOM4	0	genome.wustl.edu	37	X	50378665	50378665	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	50378665	50378665	G	A	SNP	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	silent	c.408	p.D136	1.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352				32	0	0	12	12	50
CXorf67	0	genome.wustl.edu	37	X	51150040	51150040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	51150040	51150040	G	A	SNP	CXorf67	ENST00000342995	human	ensembl	74_37	+1	known	missense	c.172	p.A58T	0.000	NULL	NULL	-	no_errors	CXorf67	HGNC	ENSG00000187690				13	0	0	13	10	43.4783
MAGED1	0	genome.wustl.edu	37	X	51638632	51638632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	51638632	51638632	C	T	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	missense	c.697	p.P233S	0.202	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222				28	0	0	15	8	34.7826
MAGED1	0	genome.wustl.edu	37	X	51641391	51641391	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	51641391	51641391	G	A	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	nonsense	c.1917	p.W639*	1.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222				41	0	0	22	31	58.4906
SSX7	0	genome.wustl.edu	37	X	52677445	52677445	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	52677445	52677445	A	C	SNP	SSX7	ENST00000298181	human	ensembl	74_37	-1	known	missense	c.332	p.I111S	0.035	NULL	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX7	HGNC	ENSG00000187754				189	0	0	94	93	49.7326
AMER1	0	genome.wustl.edu	37	X	63411525	63411525	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	63411525	63411525	A	G	SNP	AMER1	ENST00000330258	human	ensembl	74_37	-1	known	missense	c.1642	p.S548P	0.675	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER1	HGNC	ENSG00000184675				44	0	0	46	5	9.80392
ZC3H12B	0	genome.wustl.edu	37	X	64708739	64708739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	64708739	64708739	G	A	SNP	ZC3H12B	ENST00000338957	human	ensembl	74_37	+1	known	missense	c.58	p.E20K	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053				13	0	0	4	7	63.6364
HEPH	0	genome.wustl.edu	37	X	65428058	65428058	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	65428058	65428058	A	G	SNP	HEPH	ENST00000519389	human	ensembl	74_37	+1	known	missense	c.2695	p.T899A	0.089	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472				48	0	0	17	19	52.7778
ATRX	0	genome.wustl.edu	37	X	76855269	76855269	+	Silent	SNP	A	A	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	76855269	76855269	A	G	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	silent	c.5718	p.S1906	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				19	0	0	23	6	20.6897
PGK1	0	genome.wustl.edu	37	X	77359863	77359863	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	77359863	77359863	T	G	SNP	PGK1	ENST00000373316	human	ensembl	74_37	+1	known	missense	c.26	p.L9R	1.000	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK1	HGNC	ENSG00000102144				35	0	0	13	13	50
RPS6KA6	0	genome.wustl.edu	37	X	83359598	83359598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	83359598	83359598	C	T	SNP	RPS6KA6	ENST00000262752	human	ensembl	74_37	-1	known	missense	c.1523	p.R508H	0.935	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133				15	0	0	9	6	40
KLHL4	0	genome.wustl.edu	37	X	86888892	86888892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	86888892	86888892	G	A	SNP	KLHL4	ENST00000373114	human	ensembl	74_37	+1	known	missense	c.1693	p.V565I	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271				32	0	0	17	14	45.1613
PCDH19	0	genome.wustl.edu	37	X	99663287	99663287	+	Silent	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	99663287	99663287	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	silent	c.309	p.L103	0.002	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				86	0	0	84	7	7.69231
TNMD	0	genome.wustl.edu	37	X	99848868	99848868	+	RNA	SNP	G	G	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	99848868	99848868	G	C	SNP	TNMD	ENST00000485971	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	TNMD	HGNC	ENSG00000000005				39	0	0	22	21	48.8372
UTY	0	genome.wustl.edu	37	Y	15591322	15591322	+	RNA	SNP	C	C	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	Y	15591322	15591322	C	T	SNP	UTY	ENST00000474365	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UTY	HGNC	ENSG00000183878				29	0	0	12	9	42.8571
RBMY2EP	0	genome.wustl.edu	37	Y	23557656	23557656	+	RNA	SNP	G	G	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	Y	23557656	23557656	G	A	SNP	RBMY2EP	ENST00000444169	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RBMY2EP	HGNC	ENSG00000223637				15	0	0	3	3	50
WDR47	0	genome.wustl.edu	37	1	109560141	109560141	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	109560141	109560141	T	-	DEL	WDR47	ENST00000400794	human	ensembl	74_37	-1	known	frame_shift_del	c.241	p.R81fs	1.000	smart_CTLH_C,pfscan_CTLH_C	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR47	HGNC	ENSG00000085433				47	0	0	32	5	13.5135
CEPT1	0	genome.wustl.edu	37	1	111703836	111703836	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	111703836	111703836	T	-	DEL	CEPT1	ENST00000357172	human	ensembl	74_37	+1	known	frame_shift_del	c.547	p.C185fs	1.000	pfam_CDP-OH_P_trans,pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CEPT1	HGNC	ENSG00000134255				241	1	0.413223	152	36	19.1489
PHTF1	0	genome.wustl.edu	37	1	114248546	114248546	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	114248546	114248546	A	-	DEL	PHTF1	ENST00000369604	human	ensembl	74_37	-1	known	frame_shift_del	c.1637	p.F546fs	1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF1	HGNC	ENSG00000116793				50	0	0	34	11	24.4444
SYCP1	0	genome.wustl.edu	37	1	115469133	115469134	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	115469133	115469134	-	A	INS	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_ins	c.1875_1876	p.G628fs	0.992:1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				15	0	0	20	2	9.09091
HORMAD1	0	genome.wustl.edu	37	1	150686529	150686529	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	150686529	150686529	A	-	DEL	HORMAD1	ENST00000476530	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	HORMAD1	HGNC	ENSG00000143452				47	0	0	42	7	14.2857
PRUNE	0	genome.wustl.edu	37	1	151006351	151006351	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	151006351	151006351	A	-	DEL	PRUNE	ENST00000271620	human	ensembl	74_37	+1	known	frame_shift_del	c.1003	p.N335fs	0.731	pfam_DHHA2	pfam_DHHA2,pfam_Pesterase_RecJ	-	no_errors	PRUNE	HGNC	ENSG00000143363				271	1	0.367647	170	51	23.0769
ZNF687	0	genome.wustl.edu	37	1	151261079	151261079	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	151261079	151261079	C	-	DEL	ZNF687	ENST00000324048	human	ensembl	74_37	+1	known	frame_shift_del	c.2191	p.H733fs	0.430	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373				147	0	0	114	40	25.974
TCHH	0	genome.wustl.edu	37	1	152086556	152086556	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	152086556	152086556	T	-	DEL	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				45	0	0	26	8	23.5294
LCE1D	0	genome.wustl.edu	37	1	152770558	152770558	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	152770558	152770558	G	-	DEL	LCE1D	ENST00000326233	human	ensembl	74_37	+1	known	frame_shift_del	c.288	p.G98fs	0.000	NULL	NULL	-	no_errors	LCE1D	HGNC	ENSG00000172155				112	0	0	100	23	18.6992
SPRR2D	0	genome.wustl.edu	37	1	153012733	153012734	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	153012733	153012734	-	G	INS	SPRR2D	ENST00000360379	human	ensembl	74_37	-1	known	frame_shift_ins	c.90_89	p.K31fs	0.004:0.004	NULL	NULL	-	no_errors	SPRR2D	HGNC	ENSG00000163216				258	0	0	237	59	19.9324
DENND4B	0	genome.wustl.edu	37	1	153916829	153916829	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	153916829	153916829	G	-	DEL	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	frame_shift_del	c.22	p.R8fs	1.000	pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				26	0	0	19	5	20.8333
C1orf43	0	genome.wustl.edu	37	1	154185146	154185146	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	154185146	154185146	T	-	DEL	C1orf43	ENST00000493814	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	C1orf43	HGNC	ENSG00000143612				38	0	0	20	9	31.0345
SHC1	0	genome.wustl.edu	37	1	154942911	154942911	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	154942911	154942911	G	-	DEL	SHC1	ENST00000368445	human	ensembl	74_37	-1	known	frame_shift_del	c.92	p.P31fs	1.000	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC1	HGNC	ENSG00000160691				95	0	0	58	22	27.5
TRIM46	0	genome.wustl.edu	37	1	155152179	155152179	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	155152179	155152179	C	-	DEL	TRIM46	ENST00000334634	human	ensembl	74_37	+1	known	frame_shift_del	c.1357	p.H455fs	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462				70	0	0	63	16	20.2532
FCRL3	0	genome.wustl.edu	37	1	157666960	157666960	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	157666960	157666960	T	-	DEL	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	frame_shift_del	c.814	p.R272fs	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856				102	0	0	84	8	8.69565
AIM2	0	genome.wustl.edu	37	1	159032487	159032487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	159032487	159032487	T	-	DEL	AIM2	ENST00000368130	human	ensembl	74_37	-1	known	frame_shift_del	c.1027	p.T343fs	0.001	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_NA-bd_OB-fold,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	AIM2	HGNC	ENSG00000163568				44	0	0	42	15	26.3158
CD84	0	genome.wustl.edu	37	1	160520869	160520869	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	160520869	160520869	T	-	DEL	CD84	ENST00000466767	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD84	HGNC	ENSG00000066294				93	0	0	51	17	25
MPC2	0	genome.wustl.edu	37	1	167889284	167889284	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	167889284	167889284	A	-	DEL	MPC2	ENST00000271373	human	ensembl	74_37	-1	known	frame_shift_del	c.280	p.W94fs	1.000	pfam_MPC	pfam_MPC	-	no_errors	MPC2	HGNC	ENSG00000143158				126	0	0	88	26	22.807
DCAF6	0	genome.wustl.edu	37	1	167962611	167962611	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	167962611	167962611	T	-	DEL	DCAF6	ENST00000367840	human	ensembl	74_37	+1	known	frame_shift_del	c.836	p.F280fs	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164				68	0	0	52	15	22.3881
KIFAP3	0	genome.wustl.edu	37	1	170001165	170001165	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	170001165	170001165	A	-	DEL	KIFAP3	ENST00000474292	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.049	-	-	-	no_errors	KIFAP3	HGNC	ENSG00000075945				56	0	0	29	7	19.4444
RCC2	0	genome.wustl.edu	37	1	17735597	17735597	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	17735597	17735597	G	-	DEL	RCC2	ENST00000375433	human	ensembl	74_37	-1	known	frame_shift_del	c.1558	p.R520fs	1.000	NULL	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,prints_Reg_chr_condens,pfscan_Reg_chr_condens	-	no_errors	RCC2	HGNC	ENSG00000179051				180	0	0	143	30	17.341
SOAT1	0	genome.wustl.edu	37	1	179304653	179304653	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	179304653	179304653	T	-	DEL	SOAT1	ENST00000367619	human	ensembl	74_37	+1	known	frame_shift_del	c.190	p.F65fs	0.997	NULL	pfam_MBOAT_fam	-	no_errors	SOAT1	HGNC	ENSG00000057252				52	0	0	29	7	19.4444
SHCBP1L	0	genome.wustl.edu	37	1	182869223	182869223	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	182869223	182869223	T	-	DEL	SHCBP1L	ENST00000367547	human	ensembl	74_37	-1	known	frame_shift_del	c.1857	p.D620fs	1.000	superfamily_Pectin_lyase_fold/virulence	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	-	no_errors	SHCBP1L	HGNC	ENSG00000157060				16	0	0	20	8	28.5714
IVNS1ABP	0	genome.wustl.edu	37	1	185270466	185270466	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	185270466	185270466	T	-	DEL	IVNS1ABP	ENST00000494880	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679				39	0	0	16	6	27.2727
B3GALT2	0	genome.wustl.edu	37	1	193149709	193149709	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	193149709	193149709	A	-	DEL	B3GALT2	ENST00000367434	human	ensembl	74_37	-1	known	frame_shift_del	c.984	p.F328fs	0.966	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT2	HGNC	ENSG00000162630				82	0	0	65	15	18.75
MRTO4	0	genome.wustl.edu	37	1	19583571	19583571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	19583571	19583571	A	-	DEL	MRTO4	ENST00000330263	human	ensembl	74_37	+1	known	frame_shift_del	c.205	p.N70fs	1.000	pfam_Ribosomal_L10/acidic_P0	pfam_Ribosomal_L10/acidic_P0	-	no_errors	MRTO4	HGNC	ENSG00000053372				406	0	0	286	76	20.9945
DDX59	0	genome.wustl.edu	37	1	200594042	200594042	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	200594042	200594042	T	-	DEL	DDX59	ENST00000447706	human	ensembl	74_37	-1	known	frame_shift_del	c.1730	p.N577fs	0.001	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				52	0	0	45	8	15.0943
PPP1R12B	0	genome.wustl.edu	37	1	202407190	202407190	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	202407190	202407190	T	-	DEL	PPP1R12B	ENST00000480184	human	ensembl	74_37	+1	novel	frame_shift_del	c.1496	p.F502fs	0.041	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				54	0	0	34	9	20.9302
ENSG00000226862	0	genome.wustl.edu	37	1	202573399	202573400	+	RNA	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	202573399	202573400	-	C	INS	ENSG00000226862	ENST00000428573	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-569A11.1	Clone_based_vega_gene	ENSG00000226862				24	0	0	19	8	29.6296
MAPKAPK2	0	genome.wustl.edu	37	1	206904644	206904645	+	RNA	INS	-	-	GT			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	206904644	206904645	-	GT	INS	MAPKAPK2	ENST00000479009	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MAPKAPK2	HGNC	ENSG00000162889				36	0	0	24	7	22.5806
RCOR3	0	genome.wustl.edu	37	1	211452638	211452638	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	211452638	211452638	A	-	DEL	RCOR3	ENST00000367005	human	ensembl	74_37	+1	known	frame_shift_del	c.526	p.E178fs	1.000	NULL	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR3	HGNC	ENSG00000117625				68	0	0	51	17	25
EIF4G3	0	genome.wustl.edu	37	1	21226332	21226332	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	21226332	21226332	T	-	DEL	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	frame_shift_del	c.1707	p.V570fs	0.003	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151				279	1	0.357143	156	41	20.8122
USP48	0	genome.wustl.edu	37	1	22033386	22033388	+	In_Frame_Del	DEL	AAA	AAA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	22033386	22033388	AAA	-	DEL	USP48	ENST00000529637	human	ensembl	74_37	-1	novel	in_frame_del	c.1975_1973	p.F658in_frame_del	0.000:0.000:0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				48	0	0	21	14	40
HSPG2	0	genome.wustl.edu	37	1	22199214	22199214	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	22199214	22199214	G	-	DEL	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	frame_shift_del	c.3928	p.H1310fs	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				24	0	0	15	5	25
ADCK3	0	genome.wustl.edu	37	1	227171736	227171736	+	RNA	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	227171736	227171736	G	-	DEL	ADCK3	ENST00000478406	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADCK3	HGNC	ENSG00000163050				20	0	0	4	11	73.3333
TAF5L	0	genome.wustl.edu	37	1	229730519	229730520	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	229730519	229730520	AC	-	DEL	TAF5L	ENST00000258281	human	ensembl	74_37	-1	known	frame_shift_del	c.1295_1294	p.V432fs	1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TFIID-su_WD40-assoc_reg,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TAF5L	HGNC	ENSG00000135801				219	0	0	191	36	15.859
ZNF496	0	genome.wustl.edu	37	1	247492780	247492781	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	247492780	247492781	-	C	INS	ZNF496	ENST00000366498	human	ensembl	74_37	-1	known	frame_shift_ins	c.101_100	p.E34fs	0.161:0.156	superfamily_Retrov_capsid_C	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714				106	0	0	97	23	19.1667
ARID1A	0	genome.wustl.edu	37	1	27107166	27107166	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	27107166	27107166	G	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.6777	p.D2260fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				162	0	0	108	20	15.625
WDTC1	0	genome.wustl.edu	37	1	27621108	27621108	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	27621108	27621108	G	-	DEL	WDTC1	ENST00000319394	human	ensembl	74_37	+1	known	frame_shift_del	c.861	p.E290fs	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDTC1	HGNC	ENSG00000142784				45	0	0	34	7	17.0732
MAP3K6	0	genome.wustl.edu	37	1	27685239	27685239	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	27685239	27685239	G	-	DEL	MAP3K6	ENST00000357582	human	ensembl	74_37	-1	known	frame_shift_del	c.2544	p.F849fs	0.991	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K6	HGNC	ENSG00000142733				99	0	0	75	24	24.2424
GMEB1	0	genome.wustl.edu	37	1	29041386	29041386	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	29041386	29041386	A	-	DEL	GMEB1	ENST00000480454	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.252	-	-	-	no_errors	GMEB1	HGNC	ENSG00000162419				11	0	0	6	5	45.4545
SYNC	0	genome.wustl.edu	37	1	33160673	33160675	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	33160673	33160675	CTC	-	DEL	SYNC	ENST00000409190	human	ensembl	74_37	-1	known	in_frame_del	c.1026_1024	p.E342in_frame_del	0.999:1.000:1.000	pfam_IF	pfam_IF	-	no_errors	SYNC	HGNC	ENSG00000162520				80	0	0	67	10	12.987
ZMYM4	0	genome.wustl.edu	37	1	35825031	35825031	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	35825031	35825031	T	-	DEL	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	frame_shift_del	c.591	p.F199fs	1.000	NULL	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				29	0	0	36	12	25
ENSG00000232335	0	genome.wustl.edu	37	1	36208989	36208989	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	36208989	36208989	A	-	DEL	ENSG00000232335	ENST00000373226	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-435D7.3	Clone_based_vega_gene	ENSG00000232335				62	0	0	35	6	14.6341
AGO1	0	genome.wustl.edu	37	1	36354045	36354045	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	36354045	36354045	C	-	DEL	AGO1	ENST00000373204	human	ensembl	74_37	+1	known	frame_shift_del	c.43	p.L17fs	1.000	NULL	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO1	HGNC	ENSG00000092847				108	0	0	106	29	21.4815
ENSG00000271554	0	genome.wustl.edu	37	1	36475027	36475027	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	36475027	36475027	A	-	DEL	ENSG00000271554	ENST00000479395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RP4-665N4.8	Clone_based_vega_gene	ENSG00000271554				42	0	0	14	13	48.1481
TRIT1	0	genome.wustl.edu	37	1	40312897	40312897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	40312897	40312897	A	-	DEL	TRIT1	ENST00000316891	human	ensembl	74_37	-1	known	frame_shift_del	c.1001	p.L334fs	1.000	NULL	pfam_IPPT,pfam_Isopentenyl_transferase,pfam_Znf_C2H2_jaz,superfamily_P-loop_NTPase,smart_Znf_U1,tigrfam_tRNA_delta_PyrP_Trfase	-	no_errors	TRIT1	HGNC	ENSG00000043514				72	0	0	63	14	18.1818
PIK3R3	0	genome.wustl.edu	37	1	46521525	46521525	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	46521525	46521525	T	-	DEL	PIK3R3	ENST00000540385	human	ensembl	74_37	-1	known	frame_shift_del	c.1021	p.M341fs	1.000	prints_PI3kinase_P85	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R3	HGNC	ENSG00000117461				148	0	0	82	29	26.1261
LURAP1	0	genome.wustl.edu	37	1	46669262	46669263	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	46669262	46669263	-	G	INS	LURAP1	ENST00000371980	human	ensembl	74_37	+1	known	frame_shift_ins	c.164_165	p.D57fs	1.000:0.998	NULL	NULL	-	no_errors	LURAP1	HGNC	ENSG00000171357				41	0	0	48	17	26.1538
PODN	0	genome.wustl.edu	37	1	53543377	53543377	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	53543377	53543377	C	-	DEL	PODN	ENST00000312553	human	ensembl	74_37	+1	known	frame_shift_del	c.903	p.P303fs	0.997	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348				258	0	0	228	56	19.7183
NFIA	0	genome.wustl.edu	37	1	61818150	61818150	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	61818150	61818150	T	-	DEL	NFIA	ENST00000371189	human	ensembl	74_37	+1	known	frame_shift_del	c.864	p.S290fs	1.000	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIA	HGNC	ENSG00000162599				59	0	0	58	19	24.6753
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				54	0	0	21	16	43.2432
EFCAB7	0	genome.wustl.edu	37	1	64036680	64036680	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	64036680	64036680	T	-	DEL	EFCAB7	ENST00000461039	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.768	-	-	-	no_errors	EFCAB7	HGNC	ENSG00000203965				34	0	0	26	13	33.3333
SGIP1	0	genome.wustl.edu	37	1	67099769	67099769	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	67099769	67099769	A	-	DEL	SGIP1	ENST00000237247	human	ensembl	74_37	+1	known	frame_shift_del	c.106	p.K38fs	0.997	NULL	pfam_Muniscin_C-term_mu_dom,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C	-	no_errors	SGIP1	HGNC	ENSG00000118473				22	0	0	13	5	27.7778
TNFRSF9	0	genome.wustl.edu	37	1	7998254	7998254	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	7998254	7998254	T	-	DEL	TNFRSF9	ENST00000377507	human	ensembl	74_37	-1	known	frame_shift_del	c.345	p.G116fs	0.019	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9	-	no_errors	TNFRSF9	HGNC	ENSG00000049249				143	1	0.694444	114	24	17.3913
RERE	0	genome.wustl.edu	37	1	8420317	8420318	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	8420317	8420318	-	C	INS	RERE	ENST00000337907	human	ensembl	74_37	-1	known	frame_shift_ins	c.3250_3249	p.S1083fs	0.000:0.000	pfam_Atrophin-like	pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	RERE	HGNC	ENSG00000142599				14	0	0	10	3	23.0769
PRKACB	0	genome.wustl.edu	37	1	84644897	84644898	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	84644897	84644898	-	A	INS	PRKACB	ENST00000370685	human	ensembl	74_37	+1	known	frame_shift_ins	c.225_226	p.W77fs	1.000:1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACB	HGNC	ENSG00000142875				26	0	0	35	6	14.6341
GBP7	0	genome.wustl.edu	37	1	89613321	89613322	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	89613321	89613322	-	C	INS	GBP7	ENST00000294671	human	ensembl	74_37	-1	known	frame_shift_ins	c.1294_1293	p.H431fs	0.980:0.994	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP7	HGNC	ENSG00000213512				170	0	0	112	36	24.3243
ZNF644	0	genome.wustl.edu	37	1	91382293	91382293	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	1	91382293	91382293	A	-	DEL	ZNF644	ENST00000467231	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF644	HGNC	ENSG00000122482				18	0	0	12	10	45.4545
NOLC1	0	genome.wustl.edu	37	10	103919299	103919299	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	103919299	103919299	A	-	DEL	NOLC1	ENST00000405356	human	ensembl	74_37	+1	known	frame_shift_del	c.863	p.K290fs	0.998	NULL	pfam_SRP40_C,pfscan_LisH_dimerisation	-	no_errors	NOLC1	HGNC	ENSG00000166197				75	0	0	64	15	18.9873
PSD	0	genome.wustl.edu	37	10	104174958	104174959	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	104174958	104174959	-	G	INS	PSD	ENST00000020673	human	ensembl	74_37	-1	known	frame_shift_ins	c.786_785	p.S263fs	0.835:0.922	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915				82	0	0	59	14	19.1781
ADD3	0	genome.wustl.edu	37	10	111893350	111893350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	111893350	111893350	A	-	DEL	ADD3	ENST00000356080	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.K701fs	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700				94	0	0	53	33	38.3721
DCLRE1A	0	genome.wustl.edu	37	10	115608957	115608957	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	115608957	115608957	T	-	DEL	DCLRE1A	ENST00000361384	human	ensembl	74_37	-1	known	frame_shift_del	c.1907	p.K636fs	1.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924				198	1	0.502513	138	37	21.1429
INPP5F	0	genome.wustl.edu	37	10	121556338	121556339	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	121556338	121556339	-	C	INS	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	frame_shift_ins	c.781_782	p.Q264fs	1.000:1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				76	0	0	35	20	36.3636
WDR11	0	genome.wustl.edu	37	10	122665505	122665505	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	122665505	122665505	T	-	DEL	WDR11	ENST00000263461	human	ensembl	74_37	+1	known	frame_shift_del	c.3409	p.F1138fs	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008				126	0	0	77	19	19.7917
UROS	0	genome.wustl.edu	37	10	127483521	127483521	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	127483521	127483521	A	-	DEL	UROS	ENST00000368786	human	ensembl	74_37	-1	known	frame_shift_del	c.588	p.F196fs	1.000	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	-	no_errors	UROS	HGNC	ENSG00000188690				103	0	0	55	18	24.6575
FRMD4A	0	genome.wustl.edu	37	10	13696452	13696452	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	13696452	13696452	G	-	DEL	FRMD4A	ENST00000357447	human	ensembl	74_37	-1	known	frame_shift_del	c.3014	p.P1005fs	1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474				131	0	0	117	19	13.9706
DNAJC1	0	genome.wustl.edu	37	10	22208767	22208767	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	22208767	22208767	T	-	DEL	DNAJC1	ENST00000376980	human	ensembl	74_37	-1	known	frame_shift_del	c.629	p.N210fs	1.000	NULL	pfam_DnaJ_domain,pfam_SANT/Myb,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC1	HGNC	ENSG00000136770				96	0	0	71	22	23.6559
MYO3A	0	genome.wustl.edu	37	10	26417377	26417378	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	26417377	26417378	-	A	INS	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	frame_shift_ins	c.2172_2173	p.N726fs	1.000:1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				53	0	0	37	7	15.9091
PFKP	0	genome.wustl.edu	37	10	3172105	3172106	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	3172105	3172106	-	G	INS	PFKP	ENST00000381125	human	ensembl	74_37	+1	known	frame_shift_ins	c.1778_1779	p.L596fs	1.000:1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057				137	0	0	117	22	15.8273
SLC16A9	0	genome.wustl.edu	37	10	61414180	61414180	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	61414180	61414180	T	-	DEL	SLC16A9	ENST00000395347	human	ensembl	74_37	-1	known	frame_shift_del	c.604	p.I202fs	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A9	HGNC	ENSG00000165449				151	0	0	102	29	22.1374
HERC4	0	genome.wustl.edu	37	10	69716603	69716604	+	RNA	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	69716603	69716604	AA	-	DEL	HERC4	ENST00000480158	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HERC4	HGNC	ENSG00000148634				39	0	0	21	13	38.2353
SLC25A16	0	genome.wustl.edu	37	10	70243182	70243182	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	70243182	70243182	T	-	DEL	SLC25A16	ENST00000265870	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.272	-	-	-	no_errors	SLC25A16	HGNC	ENSG00000122912				43	0	0	34	10	22.7273
H2AFY2	0	genome.wustl.edu	37	10	71851664	71851665	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	71851664	71851665	-	G	INS	H2AFY2	ENST00000373255	human	ensembl	74_37	+1	known	frame_shift_ins	c.431_432	p.K147fs	1.000:1.000	pirsf_Core_histone_macro-H2A	pfam_Macro_dom,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_Macro_dom,pirsf_Core_histone_macro-H2A,pfscan_Macro_dom,prints_Histone_H2A	-	no_errors	H2AFY2	HGNC	ENSG00000099284				69	0	0	71	13	15.4762
ZSWIM8	0	genome.wustl.edu	37	10	75558814	75558814	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	75558814	75558814	G	-	DEL	ZSWIM8	ENST00000398706	human	ensembl	74_37	+1	known	frame_shift_del	c.4231	p.G1412fs	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM8	HGNC	ENSG00000214655				46	0	0	30	11	26.8293
SAMD8	0	genome.wustl.edu	37	10	76910361	76910362	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	76910361	76910362	-	T	INS	SAMD8	ENST00000372690	human	ensembl	74_37	+1	known	frame_shift_ins	c.264_265	p.E90fs	0.926:1.000	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD8	HGNC	ENSG00000156671				133	0	0	88	21	19.2661
GATA3	0	genome.wustl.edu	37	10	8100728	8100728	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	8100728	8100728	C	-	DEL	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	frame_shift_del	c.702	p.S237fs	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				108	0	0	83	18	17.8218
PTEN	0	genome.wustl.edu	37	10	89717770	89717770	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	89717770	89717770	A	-	DEL	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	frame_shift_del	c.795	p.K267fs	0.994	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				71	0	0	54	9	14.2857
KIF20B	0	genome.wustl.edu	37	10	91483748	91483748	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	91483748	91483748	A	-	DEL	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	frame_shift_del	c.1750	p.K586fs	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				41	0	0	37	10	21.2766
HECTD2	0	genome.wustl.edu	37	10	93247481	93247481	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	93247481	93247481	A	-	DEL	HECTD2	ENST00000446394	human	ensembl	74_37	+1	known	frame_shift_del	c.1149	p.I386fs	1.000	NULL	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD2	HGNC	ENSG00000165338				99	0	0	72	16	18.1818
TNKS2	0	genome.wustl.edu	37	10	93601946	93601946	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	93601946	93601946	A	-	DEL	TNKS2	ENST00000371627	human	ensembl	74_37	+1	known	frame_shift_del	c.1857	p.N622fs	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854				62	0	0	39	11	22
NOC3L	0	genome.wustl.edu	37	10	96106233	96106233	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	96106233	96106233	T	-	DEL	NOC3L	ENST00000371350	human	ensembl	74_37	-1	known	frame_shift_del	c.1338	p.K446fs	1.000	superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	pfam_CCAAT-binding_factor,pfam_NOC3p,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	-	no_errors	NOC3L	HGNC	ENSG00000173145				30	0	0	37	8	17.7778
HELLS	0	genome.wustl.edu	37	10	96352051	96352051	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	96352051	96352051	A	-	DEL	HELLS	ENST00000371332	human	ensembl	74_37	+1	known	frame_shift_del	c.1971	p.R660fs	0.958	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELLS	HGNC	ENSG00000119969				54	0	0	49	10	16.9492
TM9SF3	0	genome.wustl.edu	37	10	98336474	98336475	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	10	98336474	98336475	-	T	INS	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	frame_shift_ins	c.215_214	p.S72fs	1.000:1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				122	1	0.813008	92	28	23.3333
MUC6	0	genome.wustl.edu	37	11	1016412	1016414	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	1016412	1016414	GAG	-	DEL	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	in_frame_del	c.6389_6387	p.S2130in_frame_del	0.002:0.002:0.018	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				49	0	0	30	15	33.3333
MMP10	0	genome.wustl.edu	37	11	102647034	102647035	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	102647034	102647035	-	C	INS	MMP10	ENST00000279441	human	ensembl	74_37	-1	known	frame_shift_ins	c.909_908	p.E304fs	1.000:1.000	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP10	HGNC	ENSG00000166670				72	0	0	72	16	18.1818
GUCY1A2	0	genome.wustl.edu	37	11	106810877	106810878	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	106810877	106810878	-	T	INS	GUCY1A2	ENST00000282249	human	ensembl	74_37	-1	known	frame_shift_ins	c.515_514	p.R172fs	1.000:1.000	pfam_Heme_NO-bd,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402				89	0	0	32	7	17.9487
RDX	0	genome.wustl.edu	37	11	110104136	110104137	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	110104136	110104137	-	G	INS	RDX	ENST00000530749	human	ensembl	74_37	-1	known	frame_shift_ins	c.1413_1412	p.P472fs	1.000:1.000	pirsf_ERM,pfam_ERM_C_dom,superfamily_Adenylate_cyclase-assoc_CAP_N	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	RDX	HGNC	ENSG00000137710				154	0	0	115	26	18.4397
BACE1	0	genome.wustl.edu	37	11	117186405	117186405	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	117186405	117186405	C	-	DEL	BACE1	ENST00000313005	human	ensembl	74_37	-1	known	frame_shift_del	c.107	p.G36fs	0.622	NULL	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Pept_A1_BACE,prints_Pept_A1_BACE1,prints_Aspartic_peptidase	-	no_errors	BACE1	HGNC	ENSG00000186318				12	0	0	8	3	27.2727
CCDC153	0	genome.wustl.edu	37	11	119061042	119061043	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	119061042	119061043	-	G	INS	CCDC153	ENST00000415318	human	ensembl	74_37	-1	known	frame_shift_ins	c.600_599	p.G201fs	1.000:1.000	NULL	superfamily_t-SNARE	-	no_errors	CCDC153	HGNC	ENSG00000248712				195	0	0	184	27	12.7962
MFRP	0	genome.wustl.edu	37	11	119213688	119213688	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	119213688	119213688	G	-	DEL	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	frame_shift_del	c.1150	p.H384fs	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				29	0	0	22	8	26.6667
C11orf45	0	genome.wustl.edu	37	11	128772419	128772419	+	RNA	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	128772419	128772419	G	-	DEL	C11orf45	ENST00000530168	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C11orf45	HGNC	ENSG00000174370				11	0	0	11	6	35.2941
GLB1L2	0	genome.wustl.edu	37	11	134244962	134244962	+	RNA	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	134244962	134244962	C	-	DEL	GLB1L2	ENST00000529077	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GLB1L2	HGNC	ENSG00000149328				37	0	0	32	11	25.5814
ATHL1	0	genome.wustl.edu	37	11	294680	294680	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	294680	294680	C	-	DEL	ATHL1	ENST00000409548	human	ensembl	74_37	+1	known	frame_shift_del	c.2145	p.L717fs	0.000	NULL	pfam_Glyco_hydro_65_M,superfamily_6-hairpin_glycosidase-like	-	no_errors	ATHL1	HGNC	ENSG00000142102				399	0	0	301	85	22.0207
DCDC1	0	genome.wustl.edu	37	11	31128427	31128427	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	31128427	31128427	A	-	DEL	DCDC1	ENST00000597505	human	ensembl	74_37	-1	putative	frame_shift_del	c.1668	p.F556fs	0.124	NULL	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Doublecortin_dom,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959				57	0	0	41	9	18
ART5	0	genome.wustl.edu	37	11	3660980	3660980	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	3660980	3660980	G	-	DEL	ART5	ENST00000359918	human	ensembl	74_37	-1	known	frame_shift_del	c.679	p.H227fs	0.988	pfam_ART,prints_ART	pfam_ART,prints_ART	-	no_errors	ART5	HGNC	ENSG00000167311				211	0	0	153	11	6.70732
ARHGAP1	0	genome.wustl.edu	37	11	46702224	46702224	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	46702224	46702224	G	-	DEL	ARHGAP1	ENST00000311956	human	ensembl	74_37	-1	known	frame_shift_del	c.709	p.L237fs	0.993	superfamily_Rho_GTPase_activation_prot	pfam_RhoGAP_dom,pfam_CRAL-TRIO_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_RhoGAP_dom,pfscan_CRAL-TRIO_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP1	HGNC	ENSG00000175220				53	0	0	51	12	19.0476
OR51E2	0	genome.wustl.edu	37	11	4703475	4703475	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	4703475	4703475	A	-	DEL	OR51E2	ENST00000396950	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.F156fs	0.027	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332				109	1	0.909091	88	27	23.4783
ACP2	0	genome.wustl.edu	37	11	47266669	47266671	+	RNA	DEL	TAA	TAA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	TAA	TAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	47266669	47266671	TAA	-	DEL	ACP2	ENST00000524769	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	ACP2	HGNC	ENSG00000134575				9	0	0	6	6	50
AGBL2	0	genome.wustl.edu	37	11	47689210	47689211	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	47689210	47689211	-	T	INS	AGBL2	ENST00000357610	human	ensembl	74_37	-1	known	frame_shift_ins	c.2259_2258	p.K754fs	1.000:1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL2	HGNC	ENSG00000165923				62	0	0	49	8	14.0351
OR52J3	0	genome.wustl.edu	37	11	5068683	5068683	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	5068683	5068683	A	-	DEL	OR52J3	ENST00000380370	human	ensembl	74_37	+1	known	frame_shift_del	c.928	p.K311fs	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52J3	HGNC	ENSG00000205495				51	0	0	35	9	20.4545
OR5M8	0	genome.wustl.edu	37	11	56258060	56258061	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	56258060	56258061	-	G	INS	OR5M8	ENST00000327216	human	ensembl	74_37	-1	known	frame_shift_ins	c.787_786	p.S262fs	0.027:0.011	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M8	HGNC	ENSG00000181371				69	0	0	50	6	10.7143
OR56B1	0	genome.wustl.edu	37	11	5758618	5758619	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	5758618	5758619	-	C	INS	OR56B1	ENST00000317121	human	ensembl	74_37	+1	known	frame_shift_ins	c.872_873	p.S294fs	0.986:0.242	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR56B1	HGNC	ENSG00000181023				414	0	0	298	62	17.2222
ZFP91	0	genome.wustl.edu	37	11	58384785	58384787	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	58384785	58384787	AGA	-	DEL	ZFP91	ENST00000316059	human	ensembl	74_37	+1	known	in_frame_del	c.1319_1321	p.K442in_frame_del	1.000:1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660				68	0	0	38	13	25.4902
DTX4	0	genome.wustl.edu	37	11	58949549	58949550	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	58949549	58949550	-	C	INS	DTX4	ENST00000227451	human	ensembl	74_37	+1	known	frame_shift_ins	c.549_550	p.M185fs	0.069:0.270	NULL	pfam_WWE-dom,pfam_Znf_C3HC4_RING-type,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX4	HGNC	ENSG00000110042				79	0	0	57	20	25.974
PRPF19	0	genome.wustl.edu	37	11	60671329	60671330	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	60671329	60671330	AG	-	DEL	PRPF19	ENST00000227524	human	ensembl	74_37	-1	known	frame_shift_del	c.24_23	p.S8fs	1.000:1.000	pfam_Ubox_domain,smart_Ubox_domain	pfam_WD40_repeat,pfam_Pre-mRNA_splic_Prp19,pfam_Ubox_domain,superfamily_WD40_repeat_dom,smart_Ubox_domain,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF19	HGNC	ENSG00000110107				125	0	0	92	16	14.8148
TMEM132A	0	genome.wustl.edu	37	11	60701069	60701069	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	60701069	60701069	G	-	DEL	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	frame_shift_del	c.1415	p.V474fs	0.000	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118				36	0	0	41	9	18
ZBTB3	0	genome.wustl.edu	37	11	62519843	62519845	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	62519843	62519845	AGA	-	DEL	ZBTB3	ENST00000394807	human	ensembl	74_37	-1	known	in_frame_del	c.1444_1442	p.F481in_frame_del	1.000:1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB3	HGNC	ENSG00000185670				97	0	0	73	24	24.7423
VEGFB	0	genome.wustl.edu	37	11	64004663	64004663	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	64004663	64004663	A	-	DEL	VEGFB	ENST00000309422	human	ensembl	74_37	+1	known	frame_shift_del	c.379	p.K129fs	1.000	pfscan_PDGF/VEGF_dom	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	VEGFB	HGNC	ENSG00000173511				134	1	0.740741	97	32	24.8062
SMPD1	0	genome.wustl.edu	37	11	6413286	6413286	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	6413286	6413286	C	-	DEL	SMPD1	ENST00000342245	human	ensembl	74_37	+1	known	frame_shift_del	c.991	p.F333fs	1.000	pfam_PEstase_dom,pirsf_Sphingomy_PDE	pfam_PEstase_dom,superfamily_Saposin-like,smart_SaposinB,pirsf_Sphingomy_PDE,pfscan_SaposinB	-	no_errors	SMPD1	HGNC	ENSG00000166311				91	0	0	68	15	18.0723
SLC22A20	0	genome.wustl.edu	37	11	64981480	64981481	+	RNA	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	64981480	64981481	-	C	INS	SLC22A20	ENST00000525264	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.964:0.963	-	-	-	no_errors	SLC22A20	HGNC	ENSG00000197847				25	0	0	35	5	12.5
MALAT1	0	genome.wustl.edu	37	11	65268696	65268696	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	65268696	65268696	T	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.048	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				45	0	0	20	6	23.0769
MALAT1	0	genome.wustl.edu	37	11	65273569	65273571	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	65273569	65273571	AAA	-	DEL	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.000:0.001	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				53	0	0	26	11	29.7297
YIF1A	0	genome.wustl.edu	37	11	66055105	66055105	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	66055105	66055105	G	-	DEL	YIF1A	ENST00000376901	human	ensembl	74_37	-1	known	frame_shift_del	c.391	p.R131fs	0.484	pfam_Hrf1,pfam_Yip1	pfam_Hrf1,pfam_Yip1	-	no_errors	YIF1A	HGNC	ENSG00000174851				44	0	0	38	14	26.9231
CD248	0	genome.wustl.edu	37	11	66083958	66083958	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	66083958	66083958	T	-	DEL	CD248	ENST00000311330	human	ensembl	74_37	-1	known	frame_shift_del	c.541	p.T181fs	1.000	NULL	pfam_C-type_lectin,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807				50	0	0	33	8	19.5122
C11orf80	0	genome.wustl.edu	37	11	66605851	66605851	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	66605851	66605851	A	-	DEL	C11orf80	ENST00000360962	human	ensembl	74_37	+1	known	frame_shift_del	c.1682	p.K563fs	0.458	NULL	NULL	-	no_errors	C11orf80	HGNC	ENSG00000173715				59	0	0	57	8	12.3077
PPP1CA	0	genome.wustl.edu	37	11	67165933	67165933	+	RNA	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	67165933	67165933	C	-	DEL	PPP1CA	ENST00000532446	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.080	-	-	-	no_errors	PPP1CA	HGNC	ENSG00000172531				32	0	0	17	5	22.7273
TBC1D10C	0	genome.wustl.edu	37	11	67176565	67176565	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	67176565	67176565	C	-	DEL	TBC1D10C	ENST00000312390	human	ensembl	74_37	+1	known	frame_shift_del	c.954	p.A321fs	0.756	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10C	HGNC	ENSG00000175463				24	0	0	13	3	18.75
PDDC1	0	genome.wustl.edu	37	11	770874	770874	+	RNA	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	770874	770874	G	-	DEL	PDDC1	ENST00000529966	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PDDC1	HGNC	ENSG00000177225				144	0	0	115	14	10.8527
NDUFC2	0	genome.wustl.edu	37	11	77784147	77784147	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	77784147	77784147	A	-	DEL	NDUFC2	ENST00000281031	human	ensembl	74_37	-1	known	frame_shift_del	c.207	p.F69fs	0.809	pfam_NADH-UbQ_OxRdtase_b14.5b_su,pirsf_NADH-UbQ_OxRdtase_b14.5b_su	pfam_NADH-UbQ_OxRdtase_b14.5b_su,pirsf_NADH-UbQ_OxRdtase_b14.5b_su	-	no_errors	NDUFC2	HGNC	ENSG00000151366				88	0	0	74	24	24.4898
RAB30	0	genome.wustl.edu	37	11	82705151	82705151	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	82705151	82705151	G	-	DEL	RAB30	ENST00000260056	human	ensembl	74_37	-1	known	frame_shift_del	c.107	p.P36fs	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB30	HGNC	ENSG00000137502				85	0	0	79	12	13.1868
TYR	0	genome.wustl.edu	37	11	88911521	88911521	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	88911521	88911521	T	-	DEL	TYR	ENST00000263321	human	ensembl	74_37	+1	known	frame_shift_del	c.400	p.F135fs	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498				190	0	0	143	38	20.9945
SCUBE2	0	genome.wustl.edu	37	11	9051501	9051502	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	9051501	9051502	-	T	INS	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	frame_shift_ins	c.2433_2432	p.N811fs	0.985:1.000	pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356				157	0	0	94	32	25.3968
KDM4D	0	genome.wustl.edu	37	11	94730807	94730807	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	11	94730807	94730807	A	-	DEL	KDM4D	ENST00000335080	human	ensembl	74_37	+1	known	frame_shift_del	c.271	p.K93fs	0.600	NULL	pfam_JmjC_dom,pfam_TF_JmjN,smart_TF_JmjN,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4D	HGNC	ENSG00000186280				122	1	0.813008	98	31	24.031
UTP20	0	genome.wustl.edu	37	12	101764288	101764290	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	101764288	101764290	GAG	-	DEL	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	in_frame_del	c.6634_6636	p.E2213in_frame_del	1.000:1.000:1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				198	0	0	174	14	7.44681
C12orf42	0	genome.wustl.edu	37	12	103695959	103695960	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	103695959	103695960	-	G	INS	C12orf42	ENST00000378113	human	ensembl	74_37	-1	known	frame_shift_ins	c.1010_1009	p.R337fs	0.034:0.030	NULL	NULL	-	no_errors	C12orf42	HGNC	ENSG00000179088				129	0	0	143	13	8.33333
TAS2R42	0	genome.wustl.edu	37	12	11338799	11338799	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	11338799	11338799	A	-	DEL	TAS2R42	ENST00000334266	human	ensembl	74_37	-1	known	frame_shift_del	c.745	p.S249fs	0.015	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAS2R42	HGNC	ENSG00000186136				84	0	0	44	14	24.1379
DDX54	0	genome.wustl.edu	37	12	113600936	113600936	+	Splice_Site	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	113600936	113600936	C	-	DEL	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	splice_site_del	c.2081+1	e16+1	1.000	-	-	-	no_errors	DDX54	HGNC	ENSG00000123064				70	0	0	57	21	26.9231
FBXO21	0	genome.wustl.edu	37	12	117624320	117624320	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	117624320	117624320	A	-	DEL	FBXO21	ENST00000330622	human	ensembl	74_37	-1	known	frame_shift_del	c.432	p.F144fs	1.000	superfamily_F-box_dom	pfam_Hemimethylated_DNA-bd_dom,superfamily_Hemimethylated_DNA-bd_dom,superfamily_F-box_dom,tigrfam_Hemimethylated_DNA-bd_dom	-	no_errors	FBXO21	HGNC	ENSG00000135108				68	0	0	56	18	24.3243
NOS1	0	genome.wustl.edu	37	12	117703230	117703230	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	117703230	117703230	C	-	DEL	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	frame_shift_del	c.2027	p.G676fs	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				28	0	0	29	2	6.45161
PRKAB1	0	genome.wustl.edu	37	12	120110201	120110201	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	120110201	120110201	G	-	DEL	PRKAB1	ENST00000229328	human	ensembl	74_37	+1	known	frame_shift_del	c.255	p.G87fs	0.166	superfamily_Ig_E-set	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB1	HGNC	ENSG00000111725				267	0	0	191	36	15.859
KNTC1	0	genome.wustl.edu	37	12	123078802	123078802	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	123078802	123078802	T	-	DEL	KNTC1	ENST00000545065	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.044	-	-	-	no_errors	KNTC1	HGNC	ENSG00000184445				26	0	0	19	7	26.9231
RPL22P19	0	genome.wustl.edu	37	12	125420367	125420367	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	125420367	125420367	T	-	DEL	RPL22P19	ENST00000480427	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL22P19	HGNC	ENSG00000241129				10	0	0	7	5	41.6667
DHX37	0	genome.wustl.edu	37	12	125465270	125465272	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	125465270	125465272	CTC	-	DEL	DHX37	ENST00000308736	human	ensembl	74_37	-1	known	in_frame_del	c.504_502	p.E168in_frame_del	0.904:0.904:0.905	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990				10	0	0	8	3	27.2727
GUCY2C	0	genome.wustl.edu	37	12	14796510	14796510	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	14796510	14796510	T	-	DEL	GUCY2C	ENST00000261170	human	ensembl	74_37	-1	known	frame_shift_del	c.1928	p.K643fs	0.998	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_A/G_cyclase,superfamily_Peripla_BP_I,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019				140	0	0	86	23	21.1009
PLEKHA5	0	genome.wustl.edu	37	12	19427544	19427545	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	19427544	19427545	-	A	INS	PLEKHA5	ENST00000317589	human	ensembl	74_37	+1	known	frame_shift_ins	c.922_923	p.N310fs	1.000:1.000	NULL	pfam_Pleckstrin_homology,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				40	0	0	29	11	27.5
PLEKHA5	0	genome.wustl.edu	37	12	19460408	19460408	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	19460408	19460408	A	-	DEL	PLEKHA5	ENST00000510738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.931	-	-	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				28	0	0	19	10	34.4828
GOLT1B	0	genome.wustl.edu	37	12	21661406	21661406	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	21661406	21661406	T	-	DEL	GOLT1B	ENST00000229314	human	ensembl	74_37	+1	known	frame_shift_del	c.207	p.L72fs	0.588	pfam_Vesicle_transpt_Got1/SFT2	pfam_Vesicle_transpt_Got1/SFT2	-	no_errors	GOLT1B	HGNC	ENSG00000111711				40	0	0	31	8	20.5128
LINC00477	0	genome.wustl.edu	37	12	24736562	24736562	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	24736562	24736562	A	-	DEL	LINC00477	ENST00000483544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.301	-	-	-	no_errors	LINC00477	HGNC	ENSG00000197503				143	1	0.694444	79	22	21.7822
LRRK2	0	genome.wustl.edu	37	12	40760868	40760868	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	40760868	40760868	A	-	DEL	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	frame_shift_del	c.7451	p.K2485fs	0.013	superfamily_WD40_repeat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				42	0	0	36	6	14.2857
ZCRB1	0	genome.wustl.edu	37	12	42706971	42706971	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	42706971	42706971	T	-	DEL	ZCRB1	ENST00000266529	human	ensembl	74_37	-1	known	frame_shift_del	c.552	p.K184fs	0.732	NULL	pfam_RRM_dom,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_RRM_dom_euk,smart_RRM_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_RRM_dom	-	no_errors	ZCRB1	HGNC	ENSG00000139168				43	0	0	27	6	18.1818
KMT2D	0	genome.wustl.edu	37	12	49438221	49438222	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	49438221	49438222	TC	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.5048_5047	p.E1683fs	1.000:0.999	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				147	0	0	105	31	22.7941
KCNH3	0	genome.wustl.edu	37	12	49948320	49948320	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	49948320	49948320	G	-	DEL	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	frame_shift_del	c.2119	p.G708fs	1.000	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519				86	0	0	88	15	14.5631
ENSG00000257808	0	genome.wustl.edu	37	12	53553882	53553882	+	RNA	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	53553882	53553882	C	-	DEL	ENSG00000257808	ENST00000550908	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-1136G11.8	Clone_based_vega_gene	ENSG00000257808				72	0	0	84	15	15.1515
OR6C75	0	genome.wustl.edu	37	12	55759192	55759192	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	55759192	55759192	T	-	DEL	OR6C75	ENST00000343399	human	ensembl	74_37	+1	known	frame_shift_del	c.298	p.F102fs	0.964	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C75	HGNC	ENSG00000187857				147	0	0	88	26	22.807
ITGA7	0	genome.wustl.edu	37	12	56092301	56092301	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	56092301	56092301	C	-	DEL	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	frame_shift_del	c.1190	p.G397fs	1.000	pfam_FG-GAP,smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424				170	0	0	124	28	18.4211
PA2G4	0	genome.wustl.edu	37	12	56505301	56505302	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	56505301	56505302	-	A	INS	PA2G4	ENST00000303305	human	ensembl	74_37	+1	known	frame_shift_ins	c.1107_1108	p.K372fs	1.000:1.000	tigrfam_Pap_1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	-	no_errors	PA2G4	HGNC	ENSG00000170515				155	0	0	105	29	21.6418
IL23A	0	genome.wustl.edu	37	12	56732898	56732898	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	56732898	56732898	G	-	DEL	IL23A	ENST00000228534	human	ensembl	74_37	+1	known	frame_shift_del	c.70	p.G25fs	0.004	superfamily_4_helix_cytokine-like_core	pfam_IL-6/IL-23/GCSF/MGF,superfamily_4_helix_cytokine-like_core	-	no_errors	IL23A	HGNC	ENSG00000110944				54	0	0	54	18	25
MBD6	0	genome.wustl.edu	37	12	57919556	57919556	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	57919556	57919556	C	-	DEL	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	frame_shift_del	c.805	p.P270fs	0.991	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				318	0	0	287	53	15.5882
AVPR1A	0	genome.wustl.edu	37	12	63541343	63541343	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	63541343	63541343	A	-	DEL	AVPR1A	ENST00000299178	human	ensembl	74_37	-1	known	frame_shift_del	c.1053	p.F351fs	0.998	pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_DUF1856,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vprs_V1A_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR1A	HGNC	ENSG00000166148				132	0	0	88	28	24.1379
TMBIM4	0	genome.wustl.edu	37	12	66547156	66547156	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	66547156	66547156	A	-	DEL	TMBIM4	ENST00000358230	human	ensembl	74_37	-1	known	frame_shift_del	c.170	p.L57fs	0.995	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957				56	0	0	52	16	23.5294
CHD4	0	genome.wustl.edu	37	12	6692339	6692339	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	6692339	6692339	G	-	DEL	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	frame_shift_del	c.4085	p.P1362fs	0.999	NULL	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				183	0	0	143	38	20.9945
CNOT2	0	genome.wustl.edu	37	12	70747694	70747704	+	Frame_Shift_Del	DEL	AAAAAAAAAAA	AAAAAAAAAAA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AAAAAAAAAAA	AAAAAAAAAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	70747694	70747704	AAAAAAAAAAA	-	DEL	CNOT2	ENST00000229195	human	ensembl	74_37	+1	known	frame_shift_del	c.1622_1623	p.*541fs	0.996:0.996	NULL	pfam_NOT	-	no_errors	CNOT2	HGNC	ENSG00000111596				52	0	0	41	10	19.6078
CLEC4A	0	genome.wustl.edu	37	12	8281937	8281937	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	8281937	8281937	A	-	DEL	CLEC4A	ENST00000229332	human	ensembl	74_37	+1	known	frame_shift_del	c.277	p.N95fs	0.289	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4A	HGNC	ENSG00000111729				35	0	0	21	3	12.5
CEP290	0	genome.wustl.edu	37	12	88524079	88524079	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	88524079	88524079	T	-	DEL	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	frame_shift_del	c.635	p.N212fs	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				107	0	0	96	34	26.1538
NR2C1	0	genome.wustl.edu	37	12	95442883	95442883	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	12	95442883	95442883	T	-	DEL	NR2C1	ENST00000333003	human	ensembl	74_37	-1	known	frame_shift_del	c.1092	p.E365fs	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C1	HGNC	ENSG00000120798				135	0	0	91	26	22.2222
MYO16	0	genome.wustl.edu	37	13	109661386	109661386	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	109661386	109661386	T	-	DEL	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	frame_shift_del	c.2518	p.F842fs	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				79	0	0	53	13	19.697
GAS6	0	genome.wustl.edu	37	13	114523858	114523858	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	114523858	114523858	G	-	DEL	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	frame_shift_del	c.2145	p.V716fs	0.008	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				54	0	0	53	12	18.4615
ZMYM2	0	genome.wustl.edu	37	13	20635264	20635264	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	20635264	20635264	A	-	DEL	ZMYM2	ENST00000382869	human	ensembl	74_37	+1	known	frame_shift_del	c.2811	p.S939fs	0.877	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM2	HGNC	ENSG00000121741				23	0	0	12	6	33.3333
SACS	0	genome.wustl.edu	37	13	23915417	23915417	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	23915417	23915417	T	-	DEL	SACS	ENST00000382292	human	ensembl	74_37	-1	known	frame_shift_del	c.2598	p.K866fs	0.967	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				73	0	0	54	22	28.9474
SLC46A3	0	genome.wustl.edu	37	13	29278265	29278265	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	29278265	29278265	A	-	DEL	SLC46A3	ENST00000475385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC46A3	HGNC	ENSG00000139508				34	0	0	18	13	41.9355
MEDAG	0	genome.wustl.edu	37	13	31480852	31480852	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	31480852	31480852	G	-	DEL	MEDAG	ENST00000380482	human	ensembl	74_37	+1	known	frame_shift_del	c.200	p.G69fs	0.590	NULL	NULL	-	no_errors	MEDAG	HGNC	ENSG00000102802				14	0	0	12	10	45.4545
LACC1	0	genome.wustl.edu	37	13	44455171	44455171	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	44455171	44455171	A	-	DEL	LACC1	ENST00000325686	human	ensembl	74_37	+1	known	frame_shift_del	c.50	p.N19fs	0.352	NULL	pfam_Cu_polyphenol_OxRdtase_Laccase,superfamily_Cytotoxic_necrot_fac-like_cat	-	no_errors	LACC1	HGNC	ENSG00000179630				45	0	0	44	9	16.9811
SETDB2	0	genome.wustl.edu	37	13	50026037	50026037	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	50026037	50026037	A	-	DEL	SETDB2	ENST00000317257	human	ensembl	74_37	+1	known	frame_shift_del	c.8	p.N5fs	1.000	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom	-	no_errors	SETDB2	HGNC	ENSG00000136169				28	0	0	16	5	23.8095
SETDB2	0	genome.wustl.edu	37	13	50062719	50062719	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	50062719	50062719	T	-	DEL	SETDB2	ENST00000317257	human	ensembl	74_37	+1	known	frame_shift_del	c.1906	p.L637fs	0.810	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom	-	no_errors	SETDB2	HGNC	ENSG00000136169				71	0	0	78	7	8.23529
EBPL	0	genome.wustl.edu	37	13	50235209	50235209	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	50235209	50235209	A	-	DEL	EBPL	ENST00000242827	human	ensembl	74_37	-1	known	frame_shift_del	c.516	p.F172fs	0.997	pfam_EBP	pfam_EBP	-	no_errors	EBPL	HGNC	ENSG00000123179				72	0	0	46	17	26.9841
VPS36	0	genome.wustl.edu	37	13	53000038	53000038	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	53000038	53000038	A	-	DEL	VPS36	ENST00000492650	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VPS36	HGNC	ENSG00000136100				64	0	0	51	13	20.3125
DIAPH3	0	genome.wustl.edu	37	13	60582719	60582719	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	60582719	60582719	A	-	DEL	DIAPH3	ENST00000400324	human	ensembl	74_37	-1	known	frame_shift_del	c.973	p.C325fs	0.956	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH3	HGNC	ENSG00000139734				101	0	0	75	22	22.6804
PCDH20	0	genome.wustl.edu	37	13	61987885	61987885	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	61987885	61987885	G	-	DEL	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	frame_shift_del	c.347	p.P116fs	0.967	pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991				51	0	0	38	5	11.6279
LMO7	0	genome.wustl.edu	37	13	76432165	76432166	+	RNA	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	13	76432165	76432166	-	T	INS	LMO7	ENST00000605961	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.575:0.573	-	-	-	no_errors	LMO7	HGNC	ENSG00000136153				32	0	0	23	4	14.8148
PLD4	0	genome.wustl.edu	37	14	105397162	105397162	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	105397162	105397162	G	-	DEL	PLD4	ENST00000392593	human	ensembl	74_37	+1	known	frame_shift_del	c.801	p.V269fs	1.000	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD4	HGNC	ENSG00000166428				220	0	0	146	35	19.337
OR4M1	0	genome.wustl.edu	37	14	20248931	20248931	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	20248931	20248931	G	-	DEL	OR4M1	ENST00000315957	human	ensembl	74_37	+1	known	frame_shift_del	c.450	p.G152fs	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M1	HGNC	ENSG00000176299				447	0	0	306	55	15.2355
ARHGEF40	0	genome.wustl.edu	37	14	21546604	21546604	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	21546604	21546604	G	-	DEL	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	frame_shift_del	c.2203	p.A737fs	0.899	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				141	0	0	137	27	16.4634
HOMEZ	0	genome.wustl.edu	37	14	23745310	23745310	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	23745310	23745310	A	-	DEL	HOMEZ	ENST00000431326	human	ensembl	74_37	-1	known	frame_shift_del	c.1133	p.L378fs	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOMEZ	HGNC	ENSG00000215271				60	0	0	43	13	23.2143
MYH7	0	genome.wustl.edu	37	14	23894116	23894118	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	23894116	23894118	CTT	-	DEL	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	in_frame_del	c.2541_2539	p.K847in_frame_del	1.000:1.000:1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				137	0	0	126	34	21.25
RNF31	0	genome.wustl.edu	37	14	24619939	24619940	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	24619939	24619940	-	C	INS	RNF31	ENST00000324103	human	ensembl	74_37	+1	known	frame_shift_ins	c.1330_1331	p.R446fs	0.000:0.002	NULL	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like_dom,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098				209	2	0.947867	157	33	17.3684
FOXG1	0	genome.wustl.edu	37	14	29237890	29237890	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	29237890	29237890	G	-	DEL	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	frame_shift_del	c.1405	p.G470fs	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165				121	0	0	100	15	13.0435
FANCM	0	genome.wustl.edu	37	14	45642287	45642288	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	45642287	45642288	-	CT	INS	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	frame_shift_ins	c.2190_2191	p.S734fs	0.714:0.999	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				71	0	0	59	12	16.9014
FERMT2	0	genome.wustl.edu	37	14	53360082	53360082	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	53360082	53360082	T	-	DEL	FERMT2	ENST00000343279	human	ensembl	74_37	-1	known	frame_shift_del	c.455	p.K152fs	1.000	pfam_FERM_N,smart_Band_41_domain	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712				118	0	0	64	13	16.8831
ARID4A	0	genome.wustl.edu	37	14	58814451	58814451	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	58814451	58814451	A	-	DEL	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	frame_shift_del	c.1259	p.D423fs	0.935	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219				68	0	0	48	10	17.2414
SRSF5	0	genome.wustl.edu	37	14	70238205	70238205	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	70238205	70238205	T	-	DEL	SRSF5	ENST00000556587	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SRSF5	HGNC	ENSG00000100650				109	1	0.909091	91	21	18.75
MLH3	0	genome.wustl.edu	37	14	75514604	75514604	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	75514604	75514604	T	-	DEL	MLH3	ENST00000355774	human	ensembl	74_37	-1	known	frame_shift_del	c.1755	p.E586fs	0.092	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_dom,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684				98	0	0	37	32	46.3768
EML5	0	genome.wustl.edu	37	14	89154769	89154769	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	89154769	89154769	T	-	DEL	EML5	ENST00000554922	human	ensembl	74_37	-1	known	frame_shift_del	c.2588	p.N863fs	0.034	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				268	0	0	182	48	20.8696
KCNK13	0	genome.wustl.edu	37	14	90651284	90651285	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	90651284	90651285	-	G	INS	KCNK13	ENST00000282146	human	ensembl	74_37	+1	known	frame_shift_ins	c.1164_1165	p.V390fs	0.587:1.000	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK13	HGNC	ENSG00000152315				55	0	0	46	10	17.8571
COX8C	0	genome.wustl.edu	37	14	93814398	93814398	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	14	93814398	93814398	T	-	DEL	COX8C	ENST00000342144	human	ensembl	74_37	+1	known	frame_shift_del	c.151	p.F52fs	0.000	pfam_Cyt_c_oxidase_su8,superfamily_Cyt_c_oxidase_su8	pfam_Cyt_c_oxidase_su8,superfamily_Cyt_c_oxidase_su8	-	no_errors	COX8C	HGNC	ENSG00000187581				70	0	0	53	14	20.8955
ADAMTS17	0	genome.wustl.edu	37	15	100794386	100794387	+	Splice_Site	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	100794386	100794387	-	A	INS	ADAMTS17	ENST00000268070	human	ensembl	74_37	-1	known	splice_site_ins	c.1032-3_1032-2	e7-2	1.000:0.971	-	-	-	no_errors	ADAMTS17	HGNC	ENSG00000140470				47	0	0	30	4	11.7647
OR4M2	0	genome.wustl.edu	37	15	22369024	22369024	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	22369024	22369024	G	-	DEL	OR4M2	ENST00000332663	human	ensembl	74_37	+1	putative	frame_shift_del	c.449	p.G152fs	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974				363	0	0	273	48	14.9533
HERC2	0	genome.wustl.edu	37	15	28483908	28483908	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	28483908	28483908	A	-	DEL	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	frame_shift_del	c.3588	p.F1196fs	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				59	0	0	42	9	17.6471
RYR3	0	genome.wustl.edu	37	15	33872197	33872197	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	33872197	33872197	C	-	DEL	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	frame_shift_del	c.1289	p.I432fs	0.989	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				72	0	0	52	18	25.7143
SLC12A6	0	genome.wustl.edu	37	15	34544456	34544457	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	34544456	34544457	-	A	INS	SLC12A6	ENST00000558589	human	ensembl	74_37	-1	known	frame_shift_ins	c.1221_1220	p.N408fs	1.000:1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199				61	0	0	35	8	18.6047
C15orf52	0	genome.wustl.edu	37	15	40631781	40631782	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	40631781	40631782	-	C	INS	C15orf52	ENST00000559313	human	ensembl	74_37	-1	known	frame_shift_ins	c.295_294	p.M98fs	0.992:0.991	NULL	NULL	-	no_errors	C15orf52	HGNC	ENSG00000188549				159	0	0	109	33	23.2394
ADAL	0	genome.wustl.edu	37	15	43641114	43641115	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	43641114	43641115	-	A	INS	ADAL	ENST00000422466	human	ensembl	74_37	+1	known	frame_shift_ins	c.643_644	p.E218fs	0.942:0.853	pfam_A/AMP_deaminase_dom	pfam_A/AMP_deaminase_dom	-	no_errors	ADAL	HGNC	ENSG00000168803				99	0	0	58	17	22.6667
B2M	0	genome.wustl.edu	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	45003781	45003782	CT	-	DEL	B2M	ENST00000544417	human	ensembl	74_37	+1	known	frame_shift_del	c.37_38	p.L15fs	0.000:0.000	NULL	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	B2M	HGNC	ENSG00000166710				141	0	0	89	26	22.6087
ZNF280D	0	genome.wustl.edu	37	15	56927459	56927461	+	RNA	DEL	TAA	TAA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	TAA	TAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	56927459	56927461	TAA	-	DEL	ZNF280D	ENST00000559446	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.996:0.993:0.963	-	-	-	no_errors	ZNF280D	HGNC	ENSG00000137871				19	0	0	34	11	24.4444
TCF12	0	genome.wustl.edu	37	15	57489984	57489984	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	57489984	57489984	A	-	DEL	TCF12	ENST00000438423	human	ensembl	74_37	+1	known	frame_shift_del	c.540	p.V183fs	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF12	HGNC	ENSG00000140262				85	0	0	48	17	26.1538
NARG2	0	genome.wustl.edu	37	15	60745938	60745939	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	60745938	60745939	-	G	INS	NARG2	ENST00000261520	human	ensembl	74_37	-1	known	frame_shift_ins	c.989_988	p.Q330fs	0.001:0.104	NULL	pfam_NARG2_C	-	no_errors	NARG2	HGNC	ENSG00000128915				61	0	0	58	13	18.3099
CD276	0	genome.wustl.edu	37	15	74000799	74000801	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	74000799	74000801	GAG	-	DEL	CD276	ENST00000318443	human	ensembl	74_37	+1	known	in_frame_del	c.1489_1491	p.E499in_frame_del	1.000:1.000:1.000	NULL	pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD276	HGNC	ENSG00000103855				43	0	0	26	10	27.7778
KIAA1024	0	genome.wustl.edu	37	15	79749636	79749636	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	79749636	79749636	T	-	DEL	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	frame_shift_del	c.1147	p.F384fs	1.000	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				133	0	0	86	27	23.8938
KIAA1024	0	genome.wustl.edu	37	15	79750586	79750586	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	79750586	79750586	A	-	DEL	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	frame_shift_del	c.2097	p.S702fs	0.527	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				224	0	0	160	47	22.7053
MESDC2	0	genome.wustl.edu	37	15	81271633	81271633	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	81271633	81271633	T	-	DEL	MESDC2	ENST00000261758	human	ensembl	74_37	-1	known	frame_shift_del	c.632	p.K211fs	1.000	pfam_Mesoderm_development_cand-2	pfam_Mesoderm_development_cand-2	-	no_errors	MESDC2	HGNC	ENSG00000117899				91	0	0	67	14	17.284
PDE8A	0	genome.wustl.edu	37	15	85669470	85669471	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	85669470	85669471	TA	-	DEL	PDE8A	ENST00000310298	human	ensembl	74_37	+1	known	frame_shift_del	c.2118_2119	p.M707fs	0.032:0.288	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,superfamily_PAS,superfamily_CheY-like_superfamily,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8A	HGNC	ENSG00000073417				76	0	0	74	22	22.9167
AKAP13	0	genome.wustl.edu	37	15	86227941	86227941	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	86227941	86227941	A	-	DEL	AKAP13	ENST00000558092	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.013	-	-	-	no_errors	AKAP13	HGNC	ENSG00000170776				57	0	0	22	13	37.1429
ENSG00000228998	0	genome.wustl.edu	37	15	90818527	90818529	+	RNA	DEL	GGC	GGC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	90818527	90818529	GGC	-	DEL	ENSG00000228998	ENST00000411845	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.004:0.001	-	-	-	no_errors	RP11-697E2.7	Clone_based_vega_gene	ENSG00000228998				29	0	0	10	4	28.5714
CHD2	0	genome.wustl.edu	37	15	93480819	93480819	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	93480819	93480819	A	-	DEL	CHD2	ENST00000420239	human	ensembl	74_37	+1	known	frame_shift_del	c.515	p.V175fs	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575				46	0	0	26	15	36.5854
PGPEP1L	0	genome.wustl.edu	37	15	99514376	99514377	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	99514376	99514377	-	T	INS	PGPEP1L	ENST00000378919	human	ensembl	74_37	-1	known	frame_shift_ins	c.33_32	p.L12fs	0.992:0.999	superfamily_Peptidase_C15-like	pfam_Peptidase_C15,superfamily_Peptidase_C15-like	-	no_errors	PGPEP1L	HGNC	ENSG00000183571				36	0	0	29	4	12.1212
SYNM	0	genome.wustl.edu	37	15	99673231	99673233	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	15	99673231	99673233	GAG	-	DEL	SYNM	ENST00000336292	human	ensembl	74_37	+1	known	in_frame_del	c.4663_4665	p.E1558in_frame_del	1.000:1.000:1.000	NULL	pfam_IF	-	no_errors	SYNM	HGNC	ENSG00000182253				50	0	0	35	8	18.6047
TVP23A	0	genome.wustl.edu	37	16	10867203	10867203	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	10867203	10867203	A	-	DEL	TVP23A	ENST00000299866	human	ensembl	74_37	-1	known	frame_shift_del	c.420	p.F140fs	1.000	pfam_DUF846_euk	pfam_DUF846_euk	-	no_errors	TVP23A	HGNC	ENSG00000166676				61	0	0	51	26	33.7662
ENSG00000266163	0	genome.wustl.edu	37	16	12009582	12009582	+	RNA	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	12009582	12009582	G	-	DEL	ENSG00000266163	ENST00000583357	human	ensembl	74_37	-1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors	AC007216.1	Clone_based_ensembl_gene	ENSG00000266163				15	0	0	8	3	27.2727
SNX29	0	genome.wustl.edu	37	16	12492337	12492338	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	12492337	12492338	AG	-	DEL	SNX29	ENST00000306030	human	ensembl	74_37	+1	known	frame_shift_del	c.779_780	p.S261fs	1.000:1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471				113	0	0	112	26	18.8406
PTX4	0	genome.wustl.edu	37	16	1536185	1536186	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	1536185	1536186	-	G	INS	PTX4	ENST00000447419	human	ensembl	74_37	-1	known	frame_shift_ins	c.1192_1191	p.G397fs	0.992:0.011	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	PTX4	HGNC	ENSG00000251692				67	0	0	60	12	16.6667
PALB2	0	genome.wustl.edu	37	16	23632770	23632770	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	23632770	23632770	G	-	DEL	PALB2	ENST00000261584	human	ensembl	74_37	-1	known	frame_shift_del	c.3026	p.P1009fs	1.000	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093				88	0	0	51	15	22.7273
ERN2	0	genome.wustl.edu	37	16	23718095	23718096	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	23718095	23718096	-	G	INS	ERN2	ENST00000256797	human	ensembl	74_37	-1	known	frame_shift_ins	c.611_610	p.R204fs	0.829:0.894	superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat	pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN2	HGNC	ENSG00000134398				122	0	0	104	20	16.129
GTF3C1	0	genome.wustl.edu	37	16	27509009	27509009	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	27509009	27509009	T	-	DEL	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	frame_shift_del	c.2299	p.S767fs	0.542	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				106	0	0	59	22	27.1605
KIF22	0	genome.wustl.edu	37	16	29814177	29814177	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	29814177	29814177	G	-	DEL	KIF22	ENST00000160827	human	ensembl	74_37	+1	known	frame_shift_del	c.1368	p.A458fs	0.748	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_DNA-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616				142	0	0	132	24	15.3846
BCL7C	0	genome.wustl.edu	37	16	30903991	30903991	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	30903991	30903991	G	-	DEL	BCL7C	ENST00000380317	human	ensembl	74_37	-1	known	frame_shift_del	c.358	p.Q120fs	1.000	NULL	pfam_BCL7	-	no_errors	BCL7C	HGNC	ENSG00000099385				101	0	0	77	34	30.6306
UBALD1	0	genome.wustl.edu	37	16	4660537	4660537	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	4660537	4660537	A	-	DEL	UBALD1	ENST00000283474	human	ensembl	74_37	-1	known	frame_shift_del	c.140	p.F47fs	1.000	superfamily_UBA-like	superfamily_UBA-like	-	no_errors	UBALD1	HGNC	ENSG00000153443				35	0	0	22	6	21.4286
ABCC11	0	genome.wustl.edu	37	16	48201048	48201048	+	RNA	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	48201048	48201048	C	-	DEL	ABCC11	ENST00000565329	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ABCC11	HGNC	ENSG00000121270				20	0	0	17	9	34.6154
GLYR1	0	genome.wustl.edu	37	16	4864621	4864621	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	4864621	4864621	G	-	DEL	GLYR1	ENST00000321919	human	ensembl	74_37	-1	known	frame_shift_del	c.934	p.R312fs	1.000	pfam_6PGDH_NADP-bd	pfam_6PGDH_NADP-bd,pfam_PWWP_dom,superfamily_6-PGluconate_DH_C-like,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	GLYR1	HGNC	ENSG00000140632				58	0	0	52	14	21.2121
ZNF423	0	genome.wustl.edu	37	16	49671937	49671937	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	49671937	49671937	C	-	DEL	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	frame_shift_del	c.1126	p.A376fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				67	0	0	58	14	19.4444
CKLF	0	genome.wustl.edu	37	16	66599895	66599895	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	66599895	66599895	A	-	DEL	CKLF	ENST00000264001	human	ensembl	74_37	+1	known	frame_shift_del	c.440	p.E150fs	0.164	NULL	NULL	-	no_errors	CKLF	HGNC	ENSG00000217555				125	0	0	84	30	26.3158
C16orf70	0	genome.wustl.edu	37	16	67180989	67180989	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	67180989	67180989	C	-	DEL	C16orf70	ENST00000219139	human	ensembl	74_37	+1	known	frame_shift_del	c.1224	p.R411fs	0.994	NULL	pfam_UPF0183	-	no_errors	C16orf70	HGNC	ENSG00000125149				217	0	0	152	36	19.1489
RHOT2	0	genome.wustl.edu	37	16	720909	720909	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	720909	720909	C	-	DEL	RHOT2	ENST00000315082	human	ensembl	74_37	+1	known	frame_shift_del	c.657	p.L221fs	0.996	pirsf_Rho_GTPase_Mt,pfam_EF_hand_assoc_2	pirsf_Rho_GTPase_Mt,pfam_EF_hand_assoc_2,pfam_MIRO-like,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,pfscan_EF_hand_dom	-	no_errors	RHOT2	HGNC	ENSG00000140983				46	0	0	35	5	12.5
ZFHX3	0	genome.wustl.edu	37	16	72991713	72991715	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	72991713	72991715	CCA	-	DEL	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	in_frame_del	c.2332_2330	p.V777in_frame_del	0.943:0.039:0.779	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				110	1	0.900901	110	16	12.6984
RNU6-237P	0	genome.wustl.edu	37	16	74490505	74490505	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	74490505	74490505	T	-	DEL	RNU6-237P	ENST00000515985	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RNU6-237P	HGNC	ENSG00000251794				55	0	0	25	12	32.4324
NUDT7	0	genome.wustl.edu	37	16	77775744	77775744	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	77775744	77775744	A	-	DEL	NUDT7	ENST00000268533	human	ensembl	74_37	+1	known	frame_shift_del	c.614	p.K207fs	0.000	NULL	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT7	HGNC	ENSG00000140876				126	0	0	77	16	17.2043
SDR42E1	0	genome.wustl.edu	37	16	82034454	82034455	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	82034454	82034455	-	G	INS	SDR42E1	ENST00000328945	human	ensembl	74_37	-1	known	frame_shift_ins	c.10_9	p.K3fs	0.000:0.000	NULL	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like	-	no_errors	SDR42E1	HGNC	ENSG00000184860				58	0	0	41	4	8.88889
OSGIN1	0	genome.wustl.edu	37	16	83991264	83991264	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	83991264	83991264	C	-	DEL	OSGIN1	ENST00000343939	human	ensembl	74_37	+1	putative	frame_shift_del	c.237	p.P81fs	0.001	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	OSGIN1	HGNC	ENSG00000140961				20	0	0	10	4	28.5714
ZDHHC7	0	genome.wustl.edu	37	16	85010039	85010039	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	85010039	85010039	G	-	DEL	ZDHHC7	ENST00000344861	human	ensembl	74_37	-1	known	frame_shift_del	c.948	p.S317fs	0.902	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC7	HGNC	ENSG00000153786				95	0	0	66	25	27.4725
ZC3H18	0	genome.wustl.edu	37	16	88694459	88694459	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	88694459	88694459	C	-	DEL	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	frame_shift_del	c.2401	p.Q804fs	0.269	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				166	0	0	145	35	19.4444
CPNE7	0	genome.wustl.edu	37	16	89644102	89644102	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	89644102	89644102	G	-	DEL	CPNE7	ENST00000268720	human	ensembl	74_37	+1	known	frame_shift_del	c.330	p.G112fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE7	HGNC	ENSG00000178773				17	0	0	15	5	25
TCF25	0	genome.wustl.edu	37	16	89951020	89951020	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	16	89951020	89951020	A	-	DEL	TCF25	ENST00000263346	human	ensembl	74_37	+1	known	frame_shift_del	c.385	p.K131fs	1.000	NULL	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002				44	0	0	35	8	18.6047
LOC100128006	0	genome.wustl.edu	37	17	12663850	12663850	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	12663850	12663850	A	-	DEL	LOC100128006	ENST00000584772	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-1090M7.1	Clone_based_vega_gene	ENSG00000265489				11	0	0	6	5	45.4545
ULK2	0	genome.wustl.edu	37	17	19729453	19729453	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	19729453	19729453	T	-	DEL	ULK2	ENST00000361658	human	ensembl	74_37	-1	known	frame_shift_del	c.834	p.K278fs	1.000	superfamily_Kinase-like_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290				69	0	0	63	15	19.2308
ULK2	0	genome.wustl.edu	37	17	19744819	19744820	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	19744819	19744820	-	T	INS	ULK2	ENST00000361658	human	ensembl	74_37	-1	known	frame_shift_ins	c.687_686	p.N229fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290				60	0	0	38	10	20.8333
SPECC1	0	genome.wustl.edu	37	17	20108263	20108263	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	20108263	20108263	A	-	DEL	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	frame_shift_del	c.901	p.N303fs	0.000	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				156	0	0	122	32	20.7792
MAP2K3	0	genome.wustl.edu	37	17	21202190	21202191	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	21202190	21202191	-	C	INS	MAP2K3	ENST00000342679	human	ensembl	74_37	+1	known	frame_shift_ins	c.117_118	p.R41fs	1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152				117	0	0	94	14	12.963
LHX1	0	genome.wustl.edu	37	17	35300394	35300395	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	35300394	35300395	-	C	INS	LHX1	ENST00000254457	human	ensembl	74_37	+1	known	frame_shift_ins	c.1187_1188	p.E399fs	1.000:1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX1	HGNC	ENSG00000132130				39	0	0	26	9	25.7143
PCGF2	0	genome.wustl.edu	37	17	36896587	36896587	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	36896587	36896587	C	-	DEL	PCGF2	ENST00000360797	human	ensembl	74_37	-1	known	frame_shift_del	c.69	p.Y24fs	0.003	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF2	HGNC	ENSG00000056661				143	0	0	91	21	18.75
AOC3	0	genome.wustl.edu	37	17	41008501	41008502	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	41008501	41008502	-	C	INS	AOC3	ENST00000308423	human	ensembl	74_37	+1	known	frame_shift_ins	c.2226_2227	p.Q743fs	0.000:0.000	superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471				94	0	0	68	11	13.9241
HDAC5	0	genome.wustl.edu	37	17	42160038	42160038	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	42160038	42160038	C	-	DEL	HDAC5	ENST00000225983	human	ensembl	74_37	-1	known	frame_shift_del	c.2525	p.G842fs	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840				46	0	0	34	13	27.6596
SLC25A39	0	genome.wustl.edu	37	17	42397453	42397453	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	42397453	42397453	G	-	DEL	SLC25A39	ENST00000377095	human	ensembl	74_37	-1	known	frame_shift_del	c.996	p.S333fs	0.070	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A39	HGNC	ENSG00000013306				136	0	0	102	24	19.0476
XYLT2	0	genome.wustl.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	48433967	48433967	C	-	DEL	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	frame_shift_del	c.1578	p.G529fs	1.000	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				118	0	0	100	31	23.6641
CAMTA2	0	genome.wustl.edu	37	17	4884998	4885000	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	4884998	4885000	CTC	-	DEL	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	in_frame_del	c.609_607	p.E203in_frame_del	1.000:1.000:1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				103	0	0	74	19	20.4301
ENSG00000267207	0	genome.wustl.edu	37	17	59112018	59112018	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	59112018	59112018	T	-	DEL	ENSG00000267207	ENST00000588604	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.110	-	-	-	no_errors	RP11-264B14.1	Clone_based_vega_gene	ENSG00000267207				59	0	0	33	8	19.5122
TBX4	0	genome.wustl.edu	37	17	59560345	59560345	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	59560345	59560345	C	-	DEL	TBX4	ENST00000393853	human	ensembl	74_37	+1	known	frame_shift_del	c.1109	p.P372fs	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075				62	0	0	63	20	24.0964
TBC1D3P2	0	genome.wustl.edu	37	17	60351194	60351194	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	60351194	60351194	T	-	DEL	TBC1D3P2	ENST00000339120	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.048	-	-	-	no_errors	TBC1D3P2	HGNC	ENSG00000188755				337	0	0	255	82	24.3323
STRADA	0	genome.wustl.edu	37	17	61781058	61781058	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	61781058	61781058	G	-	DEL	STRADA	ENST00000336174	human	ensembl	74_37	-1	known	frame_shift_del	c.1197	p.I400fs	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STRADA	HGNC	ENSG00000266173				112	0	0	75	21	21.875
TEX2	0	genome.wustl.edu	37	17	62265577	62265578	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	62265577	62265578	-	G	INS	TEX2	ENST00000258991	human	ensembl	74_37	-1	known	frame_shift_ins	c.2396_2395	p.Q799fs	0.250:0.355	NULL	pfam_DUF2404	-	no_errors	TEX2	HGNC	ENSG00000136478				159	0	0	127	28	18.0645
ABCA10	0	genome.wustl.edu	37	17	67218780	67218780	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	67218780	67218780	T	-	DEL	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	frame_shift_del	c.93	p.K31fs	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				83	0	0	72	17	19.1011
CASKIN2	0	genome.wustl.edu	37	17	73498972	73498973	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	73498972	73498973	-	G	INS	CASKIN2	ENST00000321617	human	ensembl	74_37	-1	known	frame_shift_ins	c.2183_2182	p.Q728fs	0.990:0.992	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN2	HGNC	ENSG00000177303				96	0	0	77	14	15.3846
UBE2O	0	genome.wustl.edu	37	17	74388088	74388089	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	74388088	74388089	-	G	INS	UBE2O	ENST00000319380	human	ensembl	74_37	-1	known	frame_shift_ins	c.3053_3052	p.H1018fs	1.000:1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931				34	0	0	25	8	24.2424
RHBDF2	0	genome.wustl.edu	37	17	74473337	74473337	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	74473337	74473337	G	-	DEL	RHBDF2	ENST00000313080	human	ensembl	74_37	-1	known	frame_shift_del	c.932	p.P311fs	1.000	pfam_Rhomboid_SP	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667				24	0	0	30	8	21.0526
DNAH17	0	genome.wustl.edu	37	17	76471926	76471926	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	76471926	76471926	A	-	DEL	DNAH17	ENST00000586052	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNAH17	HGNC	ENSG00000187775				29	0	0	27	4	12.9032
NOTUM	0	genome.wustl.edu	37	17	79911029	79911029	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	17	79911029	79911029	G	-	DEL	NOTUM	ENST00000409678	human	ensembl	74_37	-1	known	frame_shift_del	c.1299	p.V434fs	0.385	NULL	pfam_NOTUM	-	no_errors	NOTUM	HGNC	ENSG00000185269				51	0	0	38	16	29.6296
PIEZO2	0	genome.wustl.edu	37	18	10680211	10680212	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	10680211	10680212	-	A	INS	PIEZO2	ENST00000538948	human	ensembl	74_37	-1	known	frame_shift_ins	c.1469_1468	p.S490fs	1.000:1.000	pfam_Piezo	pfam_Piezo	-	no_errors	PIEZO2	HGNC	ENSG00000154864				95	0	0	52	16	23.5294
ENSG00000252258	0	genome.wustl.edu	37	18	3025533	3025533	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	3025533	3025533	A	-	DEL	ENSG00000252258	ENST00000516449	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA70	RFAM	ENSG00000252258				29	0	0	26	17	39.5349
ASXL3	0	genome.wustl.edu	37	18	31319986	31319986	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	31319986	31319986	A	-	DEL	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	frame_shift_del	c.2618	p.V876fs	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				59	0	0	38	13	25.4902
MYOM1	0	genome.wustl.edu	37	18	3151848	3151849	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	3151848	3151849	GT	-	DEL	MYOM1	ENST00000356443	human	ensembl	74_37	-1	known	frame_shift_del	c.1687_1686	p.P563fs	1.000:0.989	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM1	HGNC	ENSG00000101605				79	0	0	60	19	24.0506
SERPINB10	0	genome.wustl.edu	37	18	61584739	61584739	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	61584739	61584739	A	-	DEL	SERPINB10	ENST00000238508	human	ensembl	74_37	+1	known	frame_shift_del	c.218	p.R76fs	0.998	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550				10	0	0	13	4	23.5294
NFATC1	0	genome.wustl.edu	37	18	77246607	77246607	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	77246607	77246607	C	-	DEL	NFATC1	ENST00000427363	human	ensembl	74_37	+1	known	frame_shift_del	c.2452	p.P819fs	0.150	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC1	HGNC	ENSG00000131196				25	0	0	19	3	13.6364
PARD6G	0	genome.wustl.edu	37	18	77917844	77917845	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	18	77917844	77917845	-	G	INS	PARD6G	ENST00000353265	human	ensembl	74_37	-1	known	frame_shift_ins	c.941_940	p.Q314fs	0.169:0.162	NULL	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6G	HGNC	ENSG00000178184				8	0	0	5	4	44.4444
KRI1	0	genome.wustl.edu	37	19	10676488	10676488	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	10676488	10676488	C	-	DEL	KRI1	ENST00000361821	human	ensembl	74_37	-1	putative	frame_shift_del	c.79	p.A27fs	0.000	NULL	pfam_KRR1-interact_protein_1	-	no_errors	KRI1	HGNC	ENSG00000129347				16	0	0	5	6	54.5455
ELAVL3	0	genome.wustl.edu	37	19	11577605	11577605	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	11577605	11577605	C	-	DEL	ELAVL3	ENST00000359227	human	ensembl	74_37	-1	known	frame_shift_del	c.47	p.G16fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361				40	0	0	31	10	24.3902
PCSK4	0	genome.wustl.edu	37	19	1487089	1487089	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	1487089	1487089	G	-	DEL	PCSK4	ENST00000588195	human	ensembl	74_37	-1	known	frame_shift_del	c.817	p.L273fs	0.000	NULL	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept	-	no_errors	PCSK4	HGNC	ENSG00000115257				50	0	0	56	13	18.8406
MAP1S	0	genome.wustl.edu	37	19	17837574	17837574	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	17837574	17837574	C	-	DEL	MAP1S	ENST00000324096	human	ensembl	74_37	+1	known	frame_shift_del	c.1381	p.Q462fs	0.631	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479				8	0	0	10	3	23.0769
RPL18A	0	genome.wustl.edu	37	19	17974063	17974065	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	17974063	17974065	CTT	-	DEL	RPL18A	ENST00000222247	human	ensembl	74_37	+1	known	in_frame_del	c.522_524	p.F176in_frame_del	1.000:1.000:1.000	NULL	pfam_Ribosomal_L18a/LX	-	no_errors	RPL18A	HGNC	ENSG00000105640				42	0	0	30	7	18.9189
MAST3	0	genome.wustl.edu	37	19	18255931	18255932	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	18255931	18255932	-	C	INS	MAST3	ENST00000262811	human	ensembl	74_37	+1	known	frame_shift_ins	c.2844_2845	p.I950fs	1.000:1.000	superfamily_PDZ,pfscan_PDZ	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST3	HGNC	ENSG00000099308				236	0	0	189	50	20.9205
GDF15	0	genome.wustl.edu	37	19	18499387	18499387	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	18499387	18499387	G	-	DEL	GDF15	ENST00000252809	human	ensembl	74_37	+1	known	frame_shift_del	c.569	p.R192fs	0.953	NULL	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF15	HGNC	ENSG00000130513				35	0	0	21	10	32.2581
ZNF253	0	genome.wustl.edu	37	19	20002392	20002392	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	20002392	20002392	A	-	DEL	ZNF253	ENST00000589717	human	ensembl	74_37	+1	known	frame_shift_del	c.336	p.G115fs	0.023	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF253	HGNC	ENSG00000256771				49	0	0	35	9	20.4545
ZNF486	0	genome.wustl.edu	37	19	20307886	20307886	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	20307886	20307886	A	-	DEL	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	frame_shift_del	c.367	p.G125fs	0.994	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229				80	0	0	52	15	22.3881
ZNF486	0	genome.wustl.edu	37	19	20308120	20308120	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	20308120	20308120	A	-	DEL	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	frame_shift_del	c.601	p.I203fs	0.668	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229				50	0	0	35	7	16.6667
C19orf12	0	genome.wustl.edu	37	19	30193868	30193868	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	30193868	30193868	C	-	DEL	C19orf12	ENST00000392278	human	ensembl	74_37	-1	known	frame_shift_del	c.210	p.L71fs	0.004	NULL	NULL	-	no_errors	C19orf12	HGNC	ENSG00000131943				172	0	0	149	37	19.8925
KIAA0355	0	genome.wustl.edu	37	19	34838876	34838876	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	34838876	34838876	C	-	DEL	KIAA0355	ENST00000299505	human	ensembl	74_37	+1	known	frame_shift_del	c.2616	p.R874fs	1.000	NULL	NULL	-	no_errors	KIAA0355	HGNC	ENSG00000166398				85	0	0	85	27	24.1071
MAG	0	genome.wustl.edu	37	19	35791135	35791135	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	35791135	35791135	C	-	DEL	MAG	ENST00000392213	human	ensembl	74_37	+1	known	frame_shift_del	c.798	p.P268fs	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MAG	HGNC	ENSG00000105695				16	0	0	23	4	14.8148
KMT2B	0	genome.wustl.edu	37	19	36210764	36210764	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	36210764	36210764	C	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_del	c.515	p.P174fs	0.976	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				190	0	0	117	43	26.875
KMT2B	0	genome.wustl.edu	37	19	36223175	36223175	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	36223175	36223175	C	-	DEL	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	frame_shift_del	c.5725	p.R1911fs	0.999	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				25	0	0	23	7	23.3333
ZNF540	0	genome.wustl.edu	37	19	38102620	38102620	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	38102620	38102620	A	-	DEL	ZNF540	ENST00000316433	human	ensembl	74_37	+1	known	frame_shift_del	c.439	p.M149fs	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817				108	0	0	68	21	23.5955
ZNF540	0	genome.wustl.edu	37	19	38102983	38102983	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	38102983	38102983	A	-	DEL	ZNF540	ENST00000316433	human	ensembl	74_37	+1	known	frame_shift_del	c.802	p.K269fs	0.024	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF540	HGNC	ENSG00000171817				29	0	0	33	7	17.5
ZNF180	0	genome.wustl.edu	37	19	44982338	44982338	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	44982338	44982338	T	-	DEL	ZNF180	ENST00000221327	human	ensembl	74_37	-1	known	frame_shift_del	c.360	p.D121fs	0.021	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384				51	0	0	32	10	23.8095
MYPOP	0	genome.wustl.edu	37	19	46393971	46393972	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	46393971	46393972	-	G	INS	MYPOP	ENST00000322217	human	ensembl	74_37	-1	known	frame_shift_ins	c.1110_1109	p.A371fs	0.082:0.086	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYPOP	HGNC	ENSG00000176182				32	0	0	28	2	6.66667
HIF3A	0	genome.wustl.edu	37	19	46811551	46811551	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	46811551	46811551	C	-	DEL	HIF3A	ENST00000377670	human	ensembl	74_37	+1	known	frame_shift_del	c.437	p.Q148fs	0.761	smart_PAS,pfscan_PAS	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HIF_alpha_subunit,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,tigrfam_PAS	-	no_errors	HIF3A	HGNC	ENSG00000124440				152	0	0	128	32	20
RASIP1	0	genome.wustl.edu	37	19	49232772	49232773	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	49232772	49232773	-	C	INS	RASIP1	ENST00000222145	human	ensembl	74_37	-1	known	frame_shift_ins	c.1255_1254	p.S418fs	0.999:0.983	superfamily_SMAD_FHA_domain	pfam_Dil_domain,pfam_Ras-assoc,superfamily_SMAD_FHA_domain,smart_Ras-assoc,pfscan_Dilute,pfscan_Ras-assoc	-	no_errors	RASIP1	HGNC	ENSG00000105538				14	0	0	13	5	27.7778
PLEKHA4	0	genome.wustl.edu	37	19	49344468	49344468	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	49344468	49344468	G	-	DEL	PLEKHA4	ENST00000263265	human	ensembl	74_37	-1	known	frame_shift_del	c.1843	p.R615fs	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559				28	0	0	23	3	11.5385
TEAD2	0	genome.wustl.edu	37	19	49850472	49850473	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	49850472	49850473	-	G	INS	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	frame_shift_ins	c.884_883	p.H295fs	0.971:0.961	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				328	1	0.303951	271	59	17.8788
SLC17A7	0	genome.wustl.edu	37	19	49937127	49937128	+	Splice_Site	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	49937127	49937128	-	G	INS	SLC17A7	ENST00000221485	human	ensembl	74_37	-1	known	splice_site_ins	c.725-3_725-2	e7-2	1.000:0.992	-	-	-	no_errors	SLC17A7	HGNC	ENSG00000104888				51	0	0	48	11	18.6441
TSKS	0	genome.wustl.edu	37	19	50243064	50243064	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	50243064	50243064	G	-	DEL	TSKS	ENST00000246801	human	ensembl	74_37	-1	known	frame_shift_del	c.1748	p.P583fs	1.000	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467				183	0	0	177	14	7.32984
SPIB	0	genome.wustl.edu	37	19	50926122	50926122	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	50926122	50926122	C	-	DEL	SPIB	ENST00000595883	human	ensembl	74_37	+1	known	frame_shift_del	c.167	p.Y58fs	0.027	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPIB	HGNC	ENSG00000269404				181	0	0	140	38	21.3483
SHANK1	0	genome.wustl.edu	37	19	51170817	51170817	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	51170817	51170817	G	-	DEL	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	frame_shift_del	c.4424	p.P1475fs	0.839	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				10	0	0	10	3	23.0769
ZNF83	0	genome.wustl.edu	37	19	53117419	53117419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	53117419	53117419	T	-	DEL	ZNF83	ENST00000301096	human	ensembl	74_37	-1	known	frame_shift_del	c.399	p.K133fs	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF83	HGNC	ENSG00000167766				55	0	0	40	12	23.0769
ENSG00000267865	0	genome.wustl.edu	37	19	56220431	56220431	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	56220431	56220431	T	-	DEL	ENSG00000267865	ENST00000596293	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2611O12.8	Clone_based_vega_gene	ENSG00000267865				56	0	0	22	14	38.8889
NLRP9	0	genome.wustl.edu	37	19	56244406	56244406	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	56244406	56244406	T	-	DEL	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	frame_shift_del	c.791	p.K264fs	0.000	pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				72	0	0	66	13	16.4557
ZNF549	0	genome.wustl.edu	37	19	58049657	58049657	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	58049657	58049657	A	-	DEL	ZNF549	ENST00000376233	human	ensembl	74_37	+1	known	frame_shift_del	c.1285	p.R431fs	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF549	HGNC	ENSG00000121406				80	0	0	48	11	18.6441
ZNF530	0	genome.wustl.edu	37	19	58115649	58115649	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	58115649	58115649	T	-	DEL	ZNF530	ENST00000332854	human	ensembl	74_37	+1	known	frame_shift_del	c.35	p.F13fs	0.039	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF530	HGNC	ENSG00000183647				174	0	0	144	46	24.2105
DENND1C	0	genome.wustl.edu	37	19	6467757	6467758	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	6467757	6467758	-	G	INS	DENND1C	ENST00000381480	human	ensembl	74_37	-1	known	frame_shift_ins	c.2164_2163	p.T721fs	0.001:0.007	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744				27	0	0	21	6	22.2222
DENND1C	0	genome.wustl.edu	37	19	6477251	6477251	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	6477251	6477251	G	-	DEL	DENND1C	ENST00000381480	human	ensembl	74_37	-1	known	frame_shift_del	c.491	p.P164fs	0.983	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND1C	HGNC	ENSG00000205744				57	0	0	44	12	21.4286
MAP2K7	0	genome.wustl.edu	37	19	7976044	7976047	+	Frame_Shift_Del	DEL	AGTG	AGTG	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AGTG	AGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	7976044	7976047	AGTG	-	DEL	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	frame_shift_del	c.981	p.E329fs	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				51	0	0	58	10	14.7059
MAP2K7	0	genome.wustl.edu	37	19	7976149	7976149	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	19	7976149	7976149	C	-	DEL	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	frame_shift_del	c.996	p.P334fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				129	0	0	103	30	22.5564
CCDC138	0	genome.wustl.edu	37	2	109421455	109421455	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	109421455	109421455	A	-	DEL	CCDC138	ENST00000295124	human	ensembl	74_37	+1	known	frame_shift_del	c.846	p.K284fs	0.996	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006				34	0	0	24	6	20
PSD4	0	genome.wustl.edu	37	2	113942980	113942980	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	113942980	113942980	T	-	DEL	PSD4	ENST00000245796	human	ensembl	74_37	+1	known	frame_shift_del	c.1212	p.W406fs	0.582	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD4	HGNC	ENSG00000125637				240	0	0	190	52	21.4876
SLC35F5	0	genome.wustl.edu	37	2	114500277	114500278	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	114500277	114500278	AA	-	DEL	SLC35F5	ENST00000245680	human	ensembl	74_37	-1	known	frame_shift_del	c.742_741	p.F247fs	1.000:1.000	pfam_DMT	pfam_DMT	-	no_errors	SLC35F5	HGNC	ENSG00000115084				89	0	0	83	35	29.661
C2orf76	0	genome.wustl.edu	37	2	120069281	120069282	+	Splice_Site	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	120069281	120069282	-	A	INS	C2orf76	ENST00000334816	human	ensembl	74_37	-1	known	splice_site_ins	c.223-3_223-2	e4-2	0.984:0.405	-	-	-	no_errors	C2orf76	HGNC	ENSG00000186132				32	0	0	26	7	21.2121
EPB41L5	0	genome.wustl.edu	37	2	120836150	120836150	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	120836150	120836150	T	-	DEL	EPB41L5	ENST00000263713	human	ensembl	74_37	+1	known	frame_shift_del	c.796	p.W268fs	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L5	HGNC	ENSG00000115109				36	0	0	36	7	16.2791
ENSG00000224789	0	genome.wustl.edu	37	2	120932582	120932583	+	RNA	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	120932582	120932583	-	A	INS	ENSG00000224789	ENST00000455707	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007:0.008	-	-	-	no_errors	AC012363.4	Clone_based_vega_gene	ENSG00000224789				56	0	0	38	10	20.8333
ENSG00000231731	0	genome.wustl.edu	37	2	128263364	128263367	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	128263364	128263367	AAAA	-	DEL	ENSG00000231731	ENST00000599001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.233:0.319:0.309:0.217	-	-	-	no_errors	AC010976.2	Clone_based_vega_gene	ENSG00000231731				54	0	0	41	14	25.4545
POTEE	0	genome.wustl.edu	37	2	132021259	132021260	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	132021259	132021260	-	G	INS	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	frame_shift_ins	c.2231_2232	p.M747fs	1.000:1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219				173	0	0	204	15	6.84932
ZRANB3	0	genome.wustl.edu	37	2	136033260	136033260	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	136033260	136033260	A	-	DEL	ZRANB3	ENST00000264159	human	ensembl	74_37	-1	known	frame_shift_del	c.1032	p.F344fs	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_HNH,pfam_Znf_RanBP2,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Znf_RanBP2,smart_HNH_nuc,pfscan_Znf_RanBP2,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ZRANB3	HGNC	ENSG00000121988				32	0	0	26	10	27.7778
ACVR2A	0	genome.wustl.edu	37	2	148657041	148657041	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	148657041	148657041	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.278	p.D96fs	1.000	pfam_Activin_rcpt,prints_TGFB_receptor	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				83	0	0	68	15	18.0723
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				93	0	0	78	23	22.7723
LY75	0	genome.wustl.edu	37	2	160676356	160676356	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	160676356	160676356	T	-	DEL	LY75	ENST00000554112	human	ensembl	74_37	-1	known	frame_shift_del	c.4034	p.N1345fs	0.139	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219				80	0	0	65	20	23.5294
SLC4A10	0	genome.wustl.edu	37	2	162719484	162719485	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	162719484	162719485	-	A	INS	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	frame_shift_ins	c.678_679	p.L228fs	1.000:1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290				28	0	0	16	8	33.3333
PXDN	0	genome.wustl.edu	37	2	1652984	1652984	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	1652984	1652984	G	-	DEL	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	frame_shift_del	c.2568	p.C857fs	0.996	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				53	0	0	37	8	17.7778
COBLL1	0	genome.wustl.edu	37	2	165551296	165551297	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	165551296	165551297	AA	-	DEL	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_del	c.2921_2920	p.L974fs	0.972:0.886	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				48	0	0	47	8	14.5455
DHRS9	0	genome.wustl.edu	37	2	169938083	169938083	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	169938083	169938083	G	-	DEL	DHRS9	ENST00000432060	human	ensembl	74_37	+1	known	frame_shift_del	c.172	p.G59fs	0.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS9	HGNC	ENSG00000073737				81	0	0	40	9	18.3673
LRP2	0	genome.wustl.edu	37	2	170042319	170042319	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	170042319	170042319	G	-	DEL	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	frame_shift_del	c.9539	p.P3180fs	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				256	0	0	161	30	15.7068
DYNC1I2	0	genome.wustl.edu	37	2	172549339	172549339	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	172549339	172549339	A	-	DEL	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	frame_shift_del	c.161	p.R57fs	1.000	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				20	0	0	12	4	25
METAP1D	0	genome.wustl.edu	37	2	172928644	172928644	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	172928644	172928644	T	-	DEL	METAP1D	ENST00000493035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	METAP1D	HGNC	ENSG00000172878				42	0	0	27	8	22.8571
MTX2	0	genome.wustl.edu	37	2	177194090	177194090	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	177194090	177194090	A	-	DEL	MTX2	ENST00000249442	human	ensembl	74_37	+1	known	frame_shift_del	c.479	p.K161fs	1.000	superfamily_Glutathione-S-Trfase_C-like	pfam_Sam37/metaxin,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	MTX2	HGNC	ENSG00000128654				82	0	0	46	18	28.125
TTN	0	genome.wustl.edu	37	2	179659863	179659863	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	179659863	179659863	G	-	DEL	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_del	c.1031	p.P344fs	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				91	0	0	71	16	18.3908
FSIP2	0	genome.wustl.edu	37	2	186678471	186678473	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	186678471	186678473	AAG	-	DEL	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	in_frame_del	c.20294_20296	p.E6767in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				36	0	0	21	6	22.2222
DNAH7	0	genome.wustl.edu	37	2	196866535	196866535	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	196866535	196866535	T	-	DEL	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	frame_shift_del	c.1037	p.K346fs	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				60	0	0	47	10	17.5439
SGOL2	0	genome.wustl.edu	37	2	201437004	201437004	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	201437004	201437004	T	-	DEL	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	frame_shift_del	c.1935	p.F648fs	0.016	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535				104	0	0	77	15	16.3043
ALS2CR11	0	genome.wustl.edu	37	2	202352352	202352352	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	202352352	202352352	T	-	DEL	ALS2CR11	ENST00000286195	human	ensembl	74_37	-1	known	frame_shift_del	c.1855	p.I619fs	0.576	NULL	superfamily_C2_dom	-	no_errors	ALS2CR11	HGNC	ENSG00000155754				89	0	0	77	26	25.2427
BMPR2	0	genome.wustl.edu	37	2	203420130	203420130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	203420130	203420130	A	-	DEL	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	frame_shift_del	c.1742	p.N583fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				92	0	0	70	20	22.2222
CARF	0	genome.wustl.edu	37	2	203839141	203839141	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	203839141	203839141	A	-	DEL	CARF	ENST00000320443	human	ensembl	74_37	+1	known	frame_shift_del	c.1416	p.N474fs	0.998	NULL	NULL	-	no_errors	CARF	HGNC	ENSG00000138380				43	0	0	40	8	16.6667
SDC1	0	genome.wustl.edu	37	2	20402090	20402090	+	RNA	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	20402090	20402090	C	-	DEL	SDC1	ENST00000482879	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SDC1	HGNC	ENSG00000115884				42	0	0	39	9	18.75
CYP20A1	0	genome.wustl.edu	37	2	204150354	204150354	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	204150354	204150354	T	-	DEL	CYP20A1	ENST00000356079	human	ensembl	74_37	+1	known	frame_shift_del	c.870	p.L292fs	0.995	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP20A1	HGNC	ENSG00000119004				63	0	0	57	11	16.1765
ZDBF2	0	genome.wustl.edu	37	2	207174869	207174869	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	207174869	207174869	A	-	DEL	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	frame_shift_del	c.5617	p.K1875fs	0.000	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186				60	0	0	21	8	27.5862
ADAM23	0	genome.wustl.edu	37	2	207460860	207460861	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	207460860	207460861	-	C	INS	ADAM23	ENST00000264377	human	ensembl	74_37	+1	known	frame_shift_ins	c.2333_2334	p.K781fs	0.005:0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948				62	0	0	56	12	17.6471
IDH1	0	genome.wustl.edu	37	2	209116262	209116263	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	209116262	209116263	-	T	INS	IDH1	ENST00000345146	human	ensembl	74_37	-1	known	frame_shift_ins	c.14_13	p.I5fs	1.000:1.000	pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	-	no_errors	IDH1	HGNC	ENSG00000138413				72	0	0	64	5	7.24638
UNC80	0	genome.wustl.edu	37	2	210642050	210642051	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	210642050	210642051	-	C	INS	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	frame_shift_ins	c.367_368	p.Q125fs	1.000:1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406				104	0	0	97	22	18.4874
KANSL1L	0	genome.wustl.edu	37	2	210887827	210887827	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	210887827	210887827	T	-	DEL	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	frame_shift_del	c.2810	p.K937fs	0.004	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				69	0	0	42	17	28.8136
USP37	0	genome.wustl.edu	37	2	219346910	219346911	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	219346910	219346911	GA	-	DEL	USP37	ENST00000258399	human	ensembl	74_37	-1	known	frame_shift_del	c.1718_1717	p.S573fs	1.000:1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP37	HGNC	ENSG00000135913				158	0	0	99	32	24.4275
SPEG	0	genome.wustl.edu	37	2	220330807	220330808	+	RNA	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	220330807	220330808	-	C	INS	SPEG	ENST00000462545	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	SPEG	HGNC	ENSG00000072195				13	0	0	19	9	32.1429
SPEG	0	genome.wustl.edu	37	2	220349122	220349122	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	220349122	220349122	C	-	DEL	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	frame_shift_del	c.6937	p.R2315fs	0.003	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				42	0	0	46	17	26.9841
SLC4A3	0	genome.wustl.edu	37	2	220494110	220494111	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	220494110	220494111	-	C	INS	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	frame_shift_ins	c.462_463	p.H156fs	0.015:0.049	prints_Anion_exchange_3	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				32	0	0	25	6	19.3548
DOCK10	0	genome.wustl.edu	37	2	225729789	225729790	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	225729789	225729790	-	A	INS	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	frame_shift_ins	c.1273_1272	p.V424fs	1.000:1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905				119	1	0.833333	80	28	25.9259
SPHKAP	0	genome.wustl.edu	37	2	228882616	228882617	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	228882616	228882617	CT	-	DEL	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	frame_shift_del	c.2954_2953	p.S985fs	0.973:0.968	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				124	0	0	110	36	24.6575
UGT1A3	0	genome.wustl.edu	37	2	234638283	234638283	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	234638283	234638283	T	-	DEL	UGT1A3	ENST00000482026	human	ensembl	74_37	+1	known	frame_shift_del	c.511	p.L173fs	0.996	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A3	HGNC	ENSG00000243135				279	0	0	200	58	22.4806
NDUFA10	0	genome.wustl.edu	37	2	240954220	240954221	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	240954220	240954221	-	G	INS	NDUFA10	ENST00000252711	human	ensembl	74_37	-1	known	frame_shift_ins	c.605_604	p.H202fs	1.000:0.999	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase,pirsf_NADH_UbQ_OxRdtase_42KD_su	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase,pirsf_NADH_UbQ_OxRdtase_42KD_su	-	no_errors	NDUFA10	HGNC	ENSG00000130414				143	0	0	102	29	22.1374
HEATR5B	0	genome.wustl.edu	37	2	37208635	37208635	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	37208635	37208635	A	-	DEL	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	frame_shift_del	c.6214	p.*2072fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				57	0	0	23	10	30.303
CEBPZ	0	genome.wustl.edu	37	2	37454908	37454908	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	37454908	37454908	T	-	DEL	CEBPZ	ENST00000234170	human	ensembl	74_37	-1	known	frame_shift_del	c.1428	p.D477fs	1.000	superfamily_ARM-type_fold	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold	-	no_errors	CEBPZ	HGNC	ENSG00000115816				48	0	0	34	10	22.7273
PPM1B	0	genome.wustl.edu	37	2	44471475	44471475	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	44471475	44471475	T	-	DEL	PPM1B	ENST00000378540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PPM1B	HGNC	ENSG00000138032				22	0	0	14	5	26.3158
PAPOLG	0	genome.wustl.edu	37	2	61006708	61006708	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	61006708	61006708	A	-	DEL	PAPOLG	ENST00000483370	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.048	-	-	-	no_errors	PAPOLG	HGNC	ENSG00000115421				33	0	0	21	6	22.2222
USP34	0	genome.wustl.edu	37	2	61571087	61571087	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	61571087	61571087	T	-	DEL	USP34	ENST00000398571	human	ensembl	74_37	-1	known	frame_shift_del	c.2363	p.N788fs	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				73	0	0	60	11	15.493
ETAA1	0	genome.wustl.edu	37	2	67629927	67629928	+	RNA	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	67629927	67629928	-	T	INS	ETAA1	ENST00000462772	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.156	-	-	-	no_errors	ETAA1	HGNC	ENSG00000143971				26	0	0	16	13	44.8276
TET3	0	genome.wustl.edu	37	2	74274036	74274037	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	74274036	74274037	TC	-	DEL	TET3	ENST00000409262	human	ensembl	74_37	+1	known	frame_shift_del	c.587_588	p.Q199fs	0.001:0.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605				72	0	0	51	23	31.0811
CCDC142	0	genome.wustl.edu	37	2	74701701	74701702	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	74701701	74701702	-	A	INS	CCDC142	ENST00000393965	human	ensembl	74_37	-1	known	frame_shift_ins	c.2225_2224	p.S742fs	0.979:0.984	NULL	NULL	-	no_errors	CCDC142	HGNC	ENSG00000135637				82	0	0	70	14	16.6667
FAHD2CP	0	genome.wustl.edu	37	2	96687157	96687157	+	RNA	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	96687157	96687157	C	-	DEL	FAHD2CP	ENST00000443258	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FAHD2CP	HGNC	ENSG00000231584				32	0	0	24	7	22.5806
LIPT1	0	genome.wustl.edu	37	2	99778504	99778504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	99778504	99778504	A	-	DEL	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	frame_shift_del	c.84	p.N30fs	0.031	NULL	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182				112	0	0	75	24	24.2424
LIPT1	0	genome.wustl.edu	37	2	99778781	99778781	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	2	99778781	99778781	A	-	DEL	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	frame_shift_del	c.361	p.K123fs	0.994	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182				100	0	0	38	18	32.1429
NDUFAF5	0	genome.wustl.edu	37	20	13797842	13797842	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	13797842	13797842	A	-	DEL	NDUFAF5	ENST00000378106	human	ensembl	74_37	+1	known	frame_shift_del	c.1024	p.K343fs	0.026	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Put_SAM_MeTrfase	-	no_errors	NDUFAF5	HGNC	ENSG00000101247				158	0	0	138	8	5.47945
PYGB	0	genome.wustl.edu	37	20	25262727	25262727	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	25262727	25262727	A	-	DEL	PYGB	ENST00000216962	human	ensembl	74_37	+1	known	frame_shift_del	c.1462	p.T488fs	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994				83	0	0	72	5	6.49351
PYGB	0	genome.wustl.edu	37	20	25262728	25262728	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	25262728	25262728	C	-	DEL	PYGB	ENST00000216962	human	ensembl	74_37	+1	known	frame_shift_del	c.1463	p.R490fs	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994				83	0	0	70	10	12.5
HM13	0	genome.wustl.edu	37	20	30142485	30142487	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	30142485	30142487	AAA	-	DEL	HM13	ENST00000474466	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.172:0.159:0.155	-	-	-	no_errors	HM13	HGNC	ENSG00000101294				25	0	0	12	11	47.8261
SLC4A11	0	genome.wustl.edu	37	20	3210958	3210958	+	RNA	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	3210958	3210958	G	-	DEL	SLC4A11	ENST00000470631	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC4A11	HGNC	ENSG00000088836				54	0	0	40	11	21.5686
MIR644A	0	genome.wustl.edu	37	20	33054130	33054130	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	33054130	33054130	T	-	DEL	MIR644A	ENST00000385262	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	MIR644A	HGNC	ENSG00000207997				23	0	0	15	5	25
CEP250	0	genome.wustl.edu	37	20	34078523	34078524	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	34078523	34078524	-	A	INS	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	frame_shift_ins	c.2647_2648	p.M885fs	0.960:0.967	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				74	0	0	41	23	35.9375
PIGT	0	genome.wustl.edu	37	20	44050025	44050026	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	44050025	44050026	-	C	INS	PIGT	ENST00000279036	human	ensembl	74_37	+1	known	frame_shift_ins	c.1036_1037	p.V349fs	0.980:0.666	pfam_PIG-T	pfam_PIG-T	-	no_errors	PIGT	HGNC	ENSG00000124155				45	0	0	47	10	17.5439
DDX27	0	genome.wustl.edu	37	20	47858504	47858504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	47858504	47858504	A	-	DEL	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	frame_shift_del	c.2065	p.K691fs	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				126	1	0.787402	99	22	18.1818
NFATC2	0	genome.wustl.edu	37	20	50159027	50159027	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	50159027	50159027	G	-	DEL	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	frame_shift_del	c.12	p.E5fs	0.970	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096				17	0	0	16	7	30.4348
SYCP2	0	genome.wustl.edu	37	20	58452519	58452519	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	58452519	58452519	T	-	DEL	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	frame_shift_del	c.3071	p.N1024fs	1.000	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				37	0	0	20	7	25.9259
CDH26	0	genome.wustl.edu	37	20	58587784	58587784	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	58587784	58587784	A	-	DEL	CDH26	ENST00000348616	human	ensembl	74_37	+1	known	frame_shift_del	c.2498	p.*833fs	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				56	0	0	33	11	25
PRPF6	0	genome.wustl.edu	37	20	62654186	62654187	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	62654186	62654187	GT	-	DEL	PRPF6	ENST00000266079	human	ensembl	74_37	+1	known	frame_shift_del	c.1724_1725	p.W577fs	1.000:0.459	smart_HAT	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161				103	0	0	98	29	22.8346
PAK7	0	genome.wustl.edu	37	20	9561247	9561247	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	20	9561247	9561247	C	-	DEL	PAK7	ENST00000353224	human	ensembl	74_37	-1	known	frame_shift_del	c.535	p.E179fs	0.692	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK7	HGNC	ENSG00000101349				200	0	0	149	49	24.7475
LTN1	0	genome.wustl.edu	37	21	30316753	30316753	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	30316753	30316753	A	-	DEL	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	frame_shift_del	c.4072	p.S1358fs	0.986	NULL	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				82	0	0	63	10	13.6986
RWDD2B	0	genome.wustl.edu	37	21	30378685	30378685	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	30378685	30378685	A	-	DEL	RWDD2B	ENST00000286777	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RWDD2B	HGNC	ENSG00000156253				14	0	0	11	4	26.6667
TTC3	0	genome.wustl.edu	37	21	38512962	38512963	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	38512962	38512963	-	A	INS	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	frame_shift_ins	c.1761_1762	p.N589fs	0.998:1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				101	1	0.980392	80	23	22.3301
ERG	0	genome.wustl.edu	37	21	39755554	39755554	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	39755554	39755554	G	-	DEL	ERG	ENST00000398919	human	ensembl	74_37	-1	known	frame_shift_del	c.1232	p.P411fs	0.987	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERG	HGNC	ENSG00000157554				145	1	0.684932	102	21	17.0732
KRTAP10-9	0	genome.wustl.edu	37	21	46047366	46047366	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	21	46047366	46047366	C	-	DEL	KRTAP10-9	ENST00000397911	human	ensembl	74_37	+1	known	frame_shift_del	c.278	p.C95fs	0.984	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837				327	0	0	249	63	20.1923
CCT8L2	0	genome.wustl.edu	37	22	17071787	17071787	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	17071787	17071787	T	-	DEL	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	frame_shift_del	c.1654	p.I552fs	0.000	NULL	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				132	1	0.75188	74	26	26
ANKRD62P1-PARP4P3	0	genome.wustl.edu	37	22	17140438	17140438	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	17140438	17140438	T	-	DEL	ANKRD62P1-PARP4P3	ENST00000456726	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.042	-	-	-	no_errors	ANKRD62P1-PARP4P3	HGNC	ENSG00000189295				52	0	0	27	8	22.8571
EIF4ENIF1	0	genome.wustl.edu	37	22	31884676	31884677	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	31884676	31884677	TC	-	DEL	EIF4ENIF1	ENST00000330125	human	ensembl	74_37	-1	known	frame_shift_del	c.29_28	p.E10fs	1.000:1.000	NULL	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708				97	0	0	41	12	22.6415
ARFGAP3	0	genome.wustl.edu	37	22	43213780	43213780	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	22	43213780	43213780	T	-	DEL	ARFGAP3	ENST00000263245	human	ensembl	74_37	-1	known	frame_shift_del	c.896	p.N299fs	0.002	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP3	HGNC	ENSG00000242247				191	0	0	134	33	19.7605
TBC1D23	0	genome.wustl.edu	37	3	100039736	100039736	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	100039736	100039736	A	-	DEL	TBC1D23	ENST00000394144	human	ensembl	74_37	+1	known	frame_shift_del	c.1939	p.K649fs	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054				41	0	0	22	19	46.3415
ZBTB20	0	genome.wustl.edu	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	114058003	114058003	G	-	DEL	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	frame_shift_del	c.2075	p.P692fs	0.678	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				100	0	0	87	30	25.641
ARHGAP31	0	genome.wustl.edu	37	3	119133295	119133295	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	119133295	119133295	C	-	DEL	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	frame_shift_del	c.2519	p.P841fs	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				115	0	0	86	8	8.51064
EAF2	0	genome.wustl.edu	37	3	121573659	121573659	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	121573659	121573659	A	-	DEL	EAF2	ENST00000273668	human	ensembl	74_37	+1	known	frame_shift_del	c.327	p.T112fs	0.970	pfam_Tscrpt_elong_fac_Eaf_N	pfam_Tscrpt_elong_fac_Eaf_N	-	no_errors	EAF2	HGNC	ENSG00000145088				54	0	0	46	14	23.3333
HEG1	0	genome.wustl.edu	37	3	124731960	124731961	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	124731960	124731961	CT	-	DEL	HEG1	ENST00000311127	human	ensembl	74_37	-1	known	frame_shift_del	c.2463_2462	p.E821fs	0.009:0.875	NULL	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706				188	0	0	136	40	22.7273
PLXNA1	0	genome.wustl.edu	37	3	126735391	126735391	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	126735391	126735391	C	-	DEL	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	frame_shift_del	c.3046	p.Q1019fs	0.981	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				125	0	0	71	49	40.8333
PODXL2	0	genome.wustl.edu	37	3	127379415	127379417	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	127379415	127379417	GAG	-	DEL	PODXL2	ENST00000342480	human	ensembl	74_37	+1	known	in_frame_del	c.544_546	p.E185in_frame_del	0.230:0.241:0.216	NULL	pfam_CD34/Podocalyxin	-	no_errors	PODXL2	HGNC	ENSG00000114631				113	0	0	92	31	25.2033
PLXND1	0	genome.wustl.edu	37	3	129303234	129303235	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	129303234	129303235	-	G	INS	PLXND1	ENST00000324093	human	ensembl	74_37	-1	known	frame_shift_ins	c.2023_2022	p.N674fs	0.000:0.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXND1	HGNC	ENSG00000004399				133	1	0.746269	101	35	25.7353
IQSEC1	0	genome.wustl.edu	37	3	12977614	12977614	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	12977614	12977614	G	-	DEL	IQSEC1	ENST00000273221	human	ensembl	74_37	-1	known	frame_shift_del	c.944	p.P315fs	0.987	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC1	HGNC	ENSG00000144711				141	0	0	98	32	24.6154
ACPP	0	genome.wustl.edu	37	3	132036365	132036365	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	132036365	132036365	T	-	DEL	ACPP	ENST00000351273	human	ensembl	74_37	+1	known	frame_shift_del	c.65	p.F24fs	0.943	NULL	pfam_His_Pase_superF_clade-2	-	no_errors	ACPP	HGNC	ENSG00000014257				65	0	0	52	14	21.2121
AMOTL2	0	genome.wustl.edu	37	3	134079020	134079021	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	134079020	134079021	-	G	INS	AMOTL2	ENST00000249883	human	ensembl	74_37	-1	known	frame_shift_ins	c.1811_1810	p.Q604fs	1.000:0.997	pfam_Angiomotin_C	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL2	HGNC	ENSG00000114019				37	0	0	37	8	17.7778
EPHB1	0	genome.wustl.edu	37	3	134670328	134670328	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	134670328	134670328	G	-	DEL	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	frame_shift_del	c.239	p.A82fs	0.965	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				43	0	0	29	6	17.1429
GK5	0	genome.wustl.edu	37	3	141923492	141923492	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	141923492	141923492	A	-	DEL	GK5	ENST00000487672	human	ensembl	74_37	-1	known	frame_shift_del	c.456	p.L153fs	0.000	NULL	pfam_Carb_kinase_FGGY_N	-	no_errors	GK5	HGNC	ENSG00000175066				31	0	0	16	15	48.3871
PLSCR1	0	genome.wustl.edu	37	3	146234963	146234964	+	RNA	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	146234963	146234964	AA	-	DEL	PLSCR1	ENST00000484560	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.163:0.236	-	-	-	no_errors	PLSCR1	HGNC	ENSG00000188313				43	0	0	22	15	40.5405
DHX36	0	genome.wustl.edu	37	3	154032978	154032978	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	154032978	154032978	T	-	DEL	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	frame_shift_del	c.460	p.M154fs	0.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				27	0	0	23	6	20.6897
IFT80	0	genome.wustl.edu	37	3	160156368	160156368	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	160156368	160156368	T	-	DEL	IFT80	ENST00000483754	human	ensembl	74_37	-1	known	frame_shift_del	c.604	p.S202fs	0.000	NULL	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_WD40_repeat_dom,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RP11-432B6.3	Clone_based_vega_gene	ENSG00000248710				63	0	0	43	26	37.6812
SI	0	genome.wustl.edu	37	3	164781250	164781250	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	164781250	164781250	A	-	DEL	SI	ENST00000264382	human	ensembl	74_37	-1	known	frame_shift_del	c.887	p.L296fs	1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				76	0	0	75	17	18.4783
BCHE	0	genome.wustl.edu	37	3	165547558	165547560	+	In_Frame_Del	DEL	CAA	CAA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CAA	CAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	165547558	165547560	CAA	-	DEL	BCHE	ENST00000264381	human	ensembl	74_37	-1	known	in_frame_del	c.1264_1262	p.V421in_frame_del	0.940:0.689:0.705	pfam_CarbesteraseB,prints_Cholinesterase	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200				112	0	0	78	23	22.7723
LRRC31	0	genome.wustl.edu	37	3	169579523	169579523	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	169579523	169579523	T	-	DEL	LRRC31	ENST00000316428	human	ensembl	74_37	-1	known	frame_shift_del	c.254	p.K85fs	0.003	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC31	HGNC	ENSG00000114248				204	0	0	117	47	28.6585
PHC3	0	genome.wustl.edu	37	3	169889138	169889138	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	169889138	169889138	A	-	DEL	PHC3	ENST00000497658	human	ensembl	74_37	-1	known	frame_shift_del	c.437	p.F146fs	0.001	NULL	NULL	-	no_errors	PHC3	HGNC	ENSG00000173889				16	0	0	3	8	72.7273
USP13	0	genome.wustl.edu	37	3	179408081	179408081	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	179408081	179408081	T	-	DEL	USP13	ENST00000263966	human	ensembl	74_37	+1	known	frame_shift_del	c.347	p.L118fs	1.000	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19/C67,pfam_UBA/Ts_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP13	HGNC	ENSG00000058056				62	0	0	29	13	30.9524
MASP1	0	genome.wustl.edu	37	3	186953595	186953596	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	186953595	186953596	-	C	INS	MASP1	ENST00000296280	human	ensembl	74_37	-1	known	frame_shift_ins	c.2064_2063	p.P689fs	0.859:1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	MASP1	HGNC	ENSG00000127241				100	0	0	77	19	19.7917
KCNH8	0	genome.wustl.edu	37	3	19554727	19554728	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	19554727	19554728	-	C	INS	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	frame_shift_ins	c.2345_2346	p.N785fs	0.511:0.020	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				151	1	0.657895	97	28	22.4
NCBP2	0	genome.wustl.edu	37	3	196664216	196664216	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	196664216	196664216	A	-	DEL	NCBP2	ENST00000467803	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	NCBP2	HGNC	ENSG00000114503				16	0	0	8	7	46.6667
ENSG00000232783	0	genome.wustl.edu	37	3	197838274	197838277	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	197838274	197838277	AAAA	-	DEL	ENSG00000232783	ENST00000411596	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001:0.001:0.001	-	-	-	no_errors	AC073135.3	Clone_based_vega_gene	ENSG00000232783				18	0	0	23	6	20.6897
SGOL1	0	genome.wustl.edu	37	3	20212755	20212756	+	RNA	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	20212755	20212756	AA	-	DEL	SGOL1	ENST00000460637	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SGOL1	HGNC	ENSG00000129810				33	0	0	14	4	22.2222
ZNF385D	0	genome.wustl.edu	37	3	21552445	21552445	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	21552445	21552445	T	-	DEL	ZNF385D	ENST00000281523	human	ensembl	74_37	-1	known	frame_shift_del	c.347	p.N116fs	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385D	HGNC	ENSG00000151789				116	0	0	70	26	27.0833
CLASP2	0	genome.wustl.edu	37	3	33602360	33602361	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	33602360	33602361	-	T	INS	CLASP2	ENST00000399362	human	ensembl	74_37	-1	known	frame_shift_ins	c.2891_2890	p.M964fs	1.000:1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP2	HGNC	ENSG00000163539				146	1	0.680272	83	25	23.1481
EPM2AIP1	0	genome.wustl.edu	37	3	37034280	37034281	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	37034280	37034281	CT	-	DEL	EPM2AIP1	ENST00000322716	human	ensembl	74_37	-1	known	frame_shift_del	c.289_288	p.R96fs	0.020:0.014	NULL	NULL	-	no_errors	EPM2AIP1	HGNC	ENSG00000178567				151	0	0	160	24	13.0435
GOLGA4	0	genome.wustl.edu	37	3	37323751	37323751	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	37323751	37323751	A	-	DEL	GOLGA4	ENST00000361924	human	ensembl	74_37	+1	known	frame_shift_del	c.465	p.K156fs	0.979	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674				91	0	0	57	21	26.9231
ZKSCAN7	0	genome.wustl.edu	37	3	44611909	44611909	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	44611909	44611909	A	-	DEL	ZKSCAN7	ENST00000273320	human	ensembl	74_37	+1	known	frame_shift_del	c.1307	p.K437fs	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN7	HGNC	ENSG00000196345				62	0	0	39	15	27.7778
CELSR3	0	genome.wustl.edu	37	3	48684307	48684307	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	48684307	48684307	G	-	DEL	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	frame_shift_del	c.7199	p.P2400fs	0.003	pfam_DUF3497	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				20	0	0	15	4	21.0526
BSN	0	genome.wustl.edu	37	3	49688111	49688112	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	49688111	49688112	-	C	INS	BSN	ENST00000296452	human	ensembl	74_37	+1	known	frame_shift_ins	c.1585_1586	p.L531fs	0.068:0.096	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				246	0	0	207	45	17.8571
MST1	0	genome.wustl.edu	37	3	49722906	49722906	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	49722906	49722906	G	-	DEL	MST1	ENST00000449682	human	ensembl	74_37	-1	known	frame_shift_del	c.1421	p.P474fs	0.969	superfamily_Kringle-like	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531				67	0	0	72	13	15.2941
DOCK3	0	genome.wustl.edu	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	51417604	51417604	C	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549	p.P1852fs	0.115	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				54	0	0	59	8	11.9403
FLNB	0	genome.wustl.edu	37	3	58089788	58089788	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	58089788	58089788	G	-	DEL	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	frame_shift_del	c.1586	p.G531fs	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				97	0	0	84	25	22.9358
ATXN7	0	genome.wustl.edu	37	3	63981832	63981832	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	63981832	63981832	C	-	DEL	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	frame_shift_del	c.2334	p.T781fs	0.705	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				120	0	0	62	11	15.0685
ADAMTS9	0	genome.wustl.edu	37	3	64527284	64527285	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	64527284	64527285	-	G	INS	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	frame_shift_ins	c.5210_5209	p.Q1737fs	1.000:1.000	pfam_Pept_M12B_GON-ADAMTSs,pfscan_Pept_M12B_GON-ADAMTSs	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				126	0	0	97	18	15.6522
EPHA3	0	genome.wustl.edu	37	3	89259454	89259454	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	89259454	89259454	A	-	DEL	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	frame_shift_del	c.598	p.K201fs	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				198	0	0	123	33	21.1538
CRYBG3	0	genome.wustl.edu	37	3	97661233	97661233	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	3	97661233	97661233	A	-	DEL	CRYBG3	ENST00000182096	human	ensembl	74_37	+1	known	frame_shift_del	c.2926	p.N977fs	0.943	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200				123	0	0	97	30	23.622
SCLT1	0	genome.wustl.edu	37	4	129864163	129864163	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	129864163	129864163	T	-	DEL	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	frame_shift_del	c.1620	p.A541fs	1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				95	0	0	64	15	18.9873
CPEB2	0	genome.wustl.edu	37	4	15067858	15067858	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	15067858	15067858	T	-	DEL	CPEB2	ENST00000538197	human	ensembl	74_37	+1	known	frame_shift_del	c.2959	p.C989fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449				120	0	0	109	32	22.695
FHDC1	0	genome.wustl.edu	37	4	153864507	153864507	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	153864507	153864507	T	-	DEL	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	frame_shift_del	c.298	p.W102fs	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				250	0	0	175	55	23.913
KIAA0922	0	genome.wustl.edu	37	4	154525352	154525353	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	154525352	154525353	AC	-	DEL	KIAA0922	ENST00000409959	human	ensembl	74_37	+1	known	frame_shift_del	c.3188_3189	p.T1064fs	0.016:0.002	NULL	pfam_DUF3651_TMEM131	-	no_errors	KIAA0922	HGNC	ENSG00000121210				85	0	0	59	23	28.0488
FGG	0	genome.wustl.edu	37	4	155526202	155526202	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	155526202	155526202	T	-	DEL	FGG	ENST00000336098	human	ensembl	74_37	-1	known	frame_shift_del	c.1146	p.A383fs	0.737	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Fibrinogen_a/b/g_coil_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGG	HGNC	ENSG00000171557				87	0	0	65	17	20.7317
MAP9	0	genome.wustl.edu	37	4	156273869	156273869	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	156273869	156273869	T	-	DEL	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	frame_shift_del	c.1700	p.K567fs	1.000	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114				16	0	0	22	7	24.1379
FAM198B	0	genome.wustl.edu	37	4	159091486	159091487	+	In_Frame_Ins	INS	-	-	GCT			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	159091486	159091487	-	GCT	INS	FAM198B	ENST00000393807	human	ensembl	74_37	-1	known	in_frame_ins	c.924_923	p.309in_frame_insA	0.001:0.033	NULL	NULL	-	no_errors	FAM198B	HGNC	ENSG00000164125				54	0	0	51	10	16.3934
TAPT1-AS1	0	genome.wustl.edu	37	4	16258121	16258121	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	16258121	16258121	T	-	DEL	TAPT1-AS1	ENST00000570786	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.968	-	-	-	no_errors	TAPT1-AS1	HGNC	ENSG00000263327				48	0	0	26	7	21.2121
DDX60	0	genome.wustl.edu	37	4	169173785	169173785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	169173785	169173785	T	-	DEL	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	frame_shift_del	c.3580	p.T1194fs	0.000	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628				162	0	0	108	23	17.5573
DDX60	0	genome.wustl.edu	37	4	169182016	169182016	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	169182016	169182016	A	-	DEL	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	frame_shift_del	c.3398	p.L1133fs	0.961	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628				67	0	0	54	14	20.5882
NEK1	0	genome.wustl.edu	37	4	170428203	170428203	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	170428203	170428203	T	-	DEL	NEK1	ENST00000507142	human	ensembl	74_37	-1	known	frame_shift_del	c.1992	p.V665fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601				14	0	0	17	7	29.1667
CLCN3	0	genome.wustl.edu	37	4	170618379	170618379	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	170618379	170618379	T	-	DEL	CLCN3	ENST00000347613	human	ensembl	74_37	+1	known	frame_shift_del	c.1057	p.F354fs	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-3	-	no_errors	CLCN3	HGNC	ENSG00000109572				98	0	0	75	7	8.53659
HAND2	0	genome.wustl.edu	37	4	174450159	174450159	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	174450159	174450159	C	-	DEL	HAND2	ENST00000359562	human	ensembl	74_37	-1	known	frame_shift_del	c.282	p.P95fs	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	HAND2	HGNC	ENSG00000164107				43	0	0	28	8	22.2222
QDPR	0	genome.wustl.edu	37	4	17492351	17492351	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	17492351	17492351	G	-	DEL	QDPR	ENST00000281243	human	ensembl	74_37	-1	known	frame_shift_del	c.563	p.P188fs	0.982	NULL	pfam_DH_sc/Rdtase_SDR	-	no_errors	QDPR	HGNC	ENSG00000151552				43	0	0	28	7	20
ENSG00000253917	0	genome.wustl.edu	37	4	3923361	3923361	+	RNA	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	3923361	3923361	G	-	DEL	ENSG00000253917	ENST00000514073	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.471	-	-	-	no_errors	AC226119.5	Clone_based_vega_gene	ENSG00000253917				15	0	0	22	5	18.5185
TECRL	0	genome.wustl.edu	37	4	65180474	65180474	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	65180474	65180474	A	-	DEL	TECRL	ENST00000381210	human	ensembl	74_37	-1	known	frame_shift_del	c.443	p.L148fs	1.000	NULL	pfam_3-oxo-5_a-steroid_4-DH_C,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	TECRL	HGNC	ENSG00000205678				22	0	0	27	8	22.8571
NPFFR2	0	genome.wustl.edu	37	4	73013327	73013327	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	73013327	73013327	A	-	DEL	NPFFR2	ENST00000308744	human	ensembl	74_37	+1	known	frame_shift_del	c.1367	p.R458fs	0.492	prints_NPFF_rcpt_2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291				101	0	0	85	27	24.1071
CCDC158	0	genome.wustl.edu	37	4	77274363	77274364	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	77274363	77274364	-	T	INS	CCDC158	ENST00000388914	human	ensembl	74_37	-1	known	frame_shift_ins	c.2358_2357	p.N786fs	1.000:1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749				61	0	0	40	4	9.09091
AFAP1-AS1	0	genome.wustl.edu	37	4	7776640	7776640	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	7776640	7776640	A	-	DEL	AFAP1-AS1	ENST00000608442	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AFAP1-AS1	HGNC	ENSG00000272620				104	1	0.952381	85	30	26.087
THAP9	0	genome.wustl.edu	37	4	83838382	83838382	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	83838382	83838382	T	-	DEL	THAP9	ENST00000302236	human	ensembl	74_37	+1	known	frame_shift_del	c.1017	p.F341fs	0.996	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152				172	0	0	109	37	25.3425
GAK	0	genome.wustl.edu	37	4	884355	884355	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	4	884355	884355	G	-	DEL	GAK	ENST00000314167	human	ensembl	74_37	-1	known	frame_shift_del	c.1046	p.P349fs	0.018	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_Kinase-like_dom,superfamily_DnaJ_domain,superfamily_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_DnaJ_domain,pfscan_Prot_kinase_dom,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	GAK	HGNC	ENSG00000178950				24	0	0	26	7	21.2121
SLC12A7	0	genome.wustl.edu	37	5	1085355	1085356	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	1085355	1085356	-	G	INS	SLC12A7	ENST00000264930	human	ensembl	74_37	-1	known	frame_shift_ins	c.909_908	p.D304fs	0.018:0.983	prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504				41	0	0	33	8	19.5122
SRFBP1	0	genome.wustl.edu	37	5	121356130	121356130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	121356130	121356130	A	-	DEL	SRFBP1	ENST00000339397	human	ensembl	74_37	+1	known	frame_shift_del	c.700	p.N236fs	0.000	NULL	pfam_Bud-site_select_BUD22	-	no_errors	SRFBP1	HGNC	ENSG00000151304				102	0	0	82	18	18
LMNB1	0	genome.wustl.edu	37	5	126168434	126168436	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	126168434	126168436	GAG	-	DEL	LMNB1	ENST00000261366	human	ensembl	74_37	+1	known	in_frame_del	c.1660_1662	p.E557in_frame_del	1.000:0.962:0.038	NULL	pfam_IF,pfam_Lamin_tail_dom	-	no_errors	LMNB1	HGNC	ENSG00000113368				118	0	0	75	10	11.7647
TXNDC15	0	genome.wustl.edu	37	5	134231959	134231960	+	RNA	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	134231959	134231960	-	T	INS	TXNDC15	ENST00000506350	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors	TXNDC15	HGNC	ENSG00000113621				66	0	0	51	13	20.3125
DNAH5	0	genome.wustl.edu	37	5	13701408	13701409	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	13701408	13701409	-	A	INS	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	frame_shift_ins	c.13476_13475	p.L4492fs	1.000:1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				128	0	0	97	28	22.4
WDR55	0	genome.wustl.edu	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	140049102	140049102	A	-	DEL	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	1.000	pirsf_WD_repeat_p55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314				52	0	0	34	10	22.7273
FCHSD1	0	genome.wustl.edu	37	5	141026156	141026156	+	RNA	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	141026156	141026156	C	-	DEL	FCHSD1	ENST00000523856	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.535	-	-	-	no_errors	FCHSD1	HGNC	ENSG00000197948				27	0	0	17	5	22.7273
ARAP3	0	genome.wustl.edu	37	5	141052870	141052870	+	RNA	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	141052870	141052870	G	-	DEL	ARAP3	ENST00000524066	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ARAP3	HGNC	ENSG00000120318				31	0	0	23	5	17.8571
SPRY4	0	genome.wustl.edu	37	5	141694154	141694154	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	141694154	141694154	G	-	DEL	SPRY4	ENST00000344120	human	ensembl	74_37	-1	known	frame_shift_del	c.589	p.R197fs	1.000	pfam_Sprouty	pfam_Sprouty	-	no_errors	SPRY4	HGNC	ENSG00000187678				184	0	0	128	28	17.9487
YIPF5	0	genome.wustl.edu	37	5	143543785	143543785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	143543785	143543785	T	-	DEL	YIPF5	ENST00000274496	human	ensembl	74_37	-1	known	frame_shift_del	c.319	p.T107fs	1.000	pfam_Yip1	pfam_Yip1	-	no_errors	YIPF5	HGNC	ENSG00000145817				71	0	0	57	8	12.3077
PPARGC1B	0	genome.wustl.edu	37	5	149210339	149210341	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	149210339	149210341	CTC	-	DEL	PPARGC1B	ENST00000309241	human	ensembl	74_37	+1	known	in_frame_del	c.475_477	p.L161in_frame_del	1.000:1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846				244	0	0	188	41	17.9039
TIMD4	0	genome.wustl.edu	37	5	156349159	156349159	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	156349159	156349159	G	-	DEL	TIMD4	ENST00000274532	human	ensembl	74_37	-1	known	frame_shift_del	c.963	p.S322fs	0.003	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	TIMD4	HGNC	ENSG00000145850				64	0	0	43	9	17.3077
SPDL1	0	genome.wustl.edu	37	5	169015404	169015404	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	169015404	169015404	A	-	DEL	SPDL1	ENST00000510751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SPDL1	HGNC	ENSG00000040275				34	0	0	24	5	17.2414
ADAMTS2	0	genome.wustl.edu	37	5	178559313	178559313	+	Splice_Site	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	178559313	178559313	T	-	DEL	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	splice_site_del	c.2210-2	e15-2	0.999	-	-	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				46	0	0	38	11	22.449
CDH10	0	genome.wustl.edu	37	5	24509853	24509853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	24509853	24509853	A	-	DEL	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	frame_shift_del	c.1078	p.Y360fs	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				73	0	0	49	8	14.0351
CDH6	0	genome.wustl.edu	37	5	31317806	31317806	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	31317806	31317806	A	-	DEL	CDH6	ENST00000265071	human	ensembl	74_37	+1	known	frame_shift_del	c.1657	p.N554fs	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361				125	0	0	115	21	15.4412
IL7R	0	genome.wustl.edu	37	5	35874637	35874637	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	35874637	35874637	A	-	DEL	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	frame_shift_del	c.793	p.R267fs	0.967	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685				89	0	0	84	6	6.66667
SKP2	0	genome.wustl.edu	37	5	36170454	36170455	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	36170454	36170455	-	A	INS	SKP2	ENST00000274255	human	ensembl	74_37	+1	known	frame_shift_ins	c.680_681	p.N229fs	0.944:0.010	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	SKP2	HGNC	ENSG00000145604				70	0	0	60	4	6.25
NNT	0	genome.wustl.edu	37	5	43619173	43619173	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	43619173	43619173	T	-	DEL	NNT	ENST00000264663	human	ensembl	74_37	+1	known	frame_shift_del	c.639	p.F215fs	0.010	pfam_AlaDH/PNT_NAD(H)-bd,tigrfam_NADP_transhyd_a	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992				65	0	0	35	8	18.6047
ITGA2	0	genome.wustl.edu	37	5	52358665	52358666	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	52358665	52358666	AC	-	DEL	ITGA2	ENST00000296585	human	ensembl	74_37	+1	known	frame_shift_del	c.1508_1509	p.T504fs	0.999:0.175	smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA2	HGNC	ENSG00000164171				172	0	0	119	26	17.931
FLJ33360	0	genome.wustl.edu	37	5	6312457	6312457	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	6312457	6312457	A	-	DEL	FLJ33360	ENST00000507444	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTD-2324F15.2	Clone_based_vega_gene	ENSG00000250490				9	0	0	5	5	50
ERBB2IP	0	genome.wustl.edu	37	5	65344603	65344603	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	65344603	65344603	A	-	DEL	ERBB2IP	ENST00000284037	human	ensembl	74_37	+1	known	frame_shift_del	c.1897	p.D635fs	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851				43	0	0	17	4	19.0476
BDP1	0	genome.wustl.edu	37	5	70805906	70805906	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	70805906	70805906	A	-	DEL	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	frame_shift_del	c.2987	p.N997fs	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				120	0	0	64	27	29.6703
MSH3	0	genome.wustl.edu	37	5	79970915	79970915	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	5	79970915	79970915	A	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.1141	p.K383fs	0.982	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				122	0	0	77	45	36.8852
CCNC	0	genome.wustl.edu	37	6	100006296	100006297	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	100006296	100006297	AA	-	DEL	CCNC	ENST00000482541	human	ensembl	74_37	-1	putative	frame_shift_del	c.423_422	p.F141fs	0.007:0.028	superfamily_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNC	HGNC	ENSG00000112237				23	0	0	15	15	50
ASCC3	0	genome.wustl.edu	37	6	101296505	101296506	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	101296505	101296506	AC	-	DEL	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	frame_shift_del	c.320_319	p.V107fs	1.000:0.936	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				75	0	0	44	10	18.5185
GRIK2	0	genome.wustl.edu	37	6	102503432	102503432	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	102503432	102503432	A	-	DEL	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	frame_shift_del	c.2539	p.N849fs	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				123	0	0	72	47	39.4958
TMEM14B	0	genome.wustl.edu	37	6	10756864	10756865	+	RNA	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	10756864	10756865	AA	-	DEL	TMEM14B	ENST00000486421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.015	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210				16	0	0	4	4	50
AK9	0	genome.wustl.edu	37	6	109850222	109850222	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	109850222	109850222	T	-	DEL	AK9	ENST00000424296	human	ensembl	74_37	-1	known	frame_shift_del	c.3625	p.R1209fs	0.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085				42	0	0	54	5	8.47458
REV3L	0	genome.wustl.edu	37	6	111696939	111696940	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	111696939	111696940	-	A	INS	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	frame_shift_ins	c.2619_2618	p.L873fs	0.048:0.065	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				71	0	0	62	20	24.3902
TUBE1	0	genome.wustl.edu	37	6	112393106	112393106	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	112393106	112393106	T	-	DEL	TUBE1	ENST00000368662	human	ensembl	74_37	-1	known	frame_shift_del	c.1268	p.K423fs	1.000	superfamily_Tub_FtsZ_C,prints_Epsilon_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935				59	0	0	49	18	26.8657
HIVEP1	0	genome.wustl.edu	37	6	12122471	12122472	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	12122471	12122472	-	C	INS	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	frame_shift_ins	c.2443_2444	p.T817fs	1.000:1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				179	0	0	115	36	23.8411
TBC1D32	0	genome.wustl.edu	37	6	121563431	121563431	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	121563431	121563431	G	-	DEL	TBC1D32	ENST00000275159	human	ensembl	74_37	-1	putative	frame_shift_del	c.2073	p.G693fs	0.998	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	TBC1D32	HGNC	ENSG00000146350				65	0	0	54	9	14.2857
TBC1D32	0	genome.wustl.edu	37	6	121629187	121629188	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	121629187	121629188	CA	-	DEL	TBC1D32	ENST00000275159	human	ensembl	74_37	-1	putative	frame_shift_del	c.625_624	p.C208fs	1.000:1.000	NULL	superfamily_Rab-GTPase-TBC_dom	-	no_errors	TBC1D32	HGNC	ENSG00000146350				65	0	0	30	9	23.0769
RNF217	0	genome.wustl.edu	37	6	125284072	125284072	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	125284072	125284072	C	-	DEL	RNF217	ENST00000521654	human	ensembl	74_37	+1	novel	frame_shift_del	c.382	p.G130fs	0.992	NULL	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373				52	0	0	36	11	23.4043
RNF146	0	genome.wustl.edu	37	6	127608767	127608767	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	127608767	127608767	G	-	DEL	RNF146	ENST00000368314	human	ensembl	74_37	+1	known	frame_shift_del	c.1009	p.G338fs	1.000	NULL	pfam_WWE-dom,smart_Znf_RING,smart_WWE-dom_subgr,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	RNF146	HGNC	ENSG00000118518				124	0	0	79	26	24.7619
MED23	0	genome.wustl.edu	37	6	131921295	131921295	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	131921295	131921295	A	-	DEL	MED23	ENST00000368058	human	ensembl	74_37	-1	known	frame_shift_del	c.2121	p.F707fs	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282				41	0	0	30	9	23.0769
MED23	0	genome.wustl.edu	37	6	131948470	131948472	+	RNA	DEL	AAA	AAA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	131948470	131948472	AAA	-	DEL	MED23	ENST00000489888	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.004:0.006	-	-	-	no_errors	MED23	HGNC	ENSG00000112282				44	0	0	20	14	41.1765
PHACTR1	0	genome.wustl.edu	37	6	13206134	13206135	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	13206134	13206135	-	G	INS	PHACTR1	ENST00000379350	human	ensembl	74_37	+1	known	frame_shift_ins	c.752_753	p.P254fs	0.246:0.087	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137				125	0	0	88	37	29.6
IFNGR1	0	genome.wustl.edu	37	6	137519505	137519506	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	137519505	137519506	CT	-	DEL	IFNGR1	ENST00000367739	human	ensembl	74_37	-1	known	frame_shift_del	c.1133_1132	p.S378fs	0.000:0.000	NULL	pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu	-	no_errors	IFNGR1	HGNC	ENSG00000027697				148	0	0	92	20	17.8571
SHPRH	0	genome.wustl.edu	37	6	146275964	146275964	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	146275964	146275964	T	-	DEL	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	frame_shift_del	c.495	p.E166fs	0.391	NULL	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				72	0	0	59	14	19.1781
ARID1B	0	genome.wustl.edu	37	6	157511329	157511329	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	157511329	157511329	G	-	DEL	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	frame_shift_del	c.3967	p.G1324fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				112	0	0	78	21	21.2121
SYNJ2	0	genome.wustl.edu	37	6	158508009	158508009	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	158508009	158508009	C	-	DEL	SYNJ2	ENST00000355585	human	ensembl	74_37	+1	known	frame_shift_del	c.3331	p.P1113fs	1.000	NULL	pfam_Syja_N,pfam_DUF1866,pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ2	HGNC	ENSG00000078269				98	0	0	64	10	13.5135
WTAP	0	genome.wustl.edu	37	6	160157395	160157395	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	160157395	160157395	A	-	DEL	WTAP	ENST00000494513	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WTAP	HGNC	ENSG00000146457				34	0	0	24	9	27.2727
WTAP	0	genome.wustl.edu	37	6	160163106	160163106	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	160163106	160163106	T	-	DEL	WTAP	ENST00000462110	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	WTAP	HGNC	ENSG00000146457				20	0	0	29	6	17.1429
IGF2R	0	genome.wustl.edu	37	6	160485488	160485488	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	160485488	160485488	G	-	DEL	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	frame_shift_del	c.3942	p.D1317fs	0.125	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				211	0	0	190	55	22.449
LPAL2	0	genome.wustl.edu	37	6	160906850	160906850	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	160906850	160906850	T	-	DEL	LPAL2	ENST00000335388	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.272	-	-	-	no_errors	LPAL2	HGNC	ENSG00000213071				450	0	0	309	77	19.9482
QKI	0	genome.wustl.edu	37	6	163899920	163899920	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	163899920	163899920	A	-	DEL	QKI	ENST00000361752	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.K134fs	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				84	0	0	61	17	21.7949
RBM24	0	genome.wustl.edu	37	6	17292449	17292450	+	RNA	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	17292449	17292450	AA	-	DEL	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.915:0.719	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				49	0	0	21	12	36.3636
HIST1H1A	0	genome.wustl.edu	37	6	26017548	26017548	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	26017548	26017548	T	-	DEL	HIST1H1A	ENST00000244573	human	ensembl	74_37	-1	known	frame_shift_del	c.413	p.K138fs	1.000	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1A	HGNC	ENSG00000124610				182	0	0	121	26	17.6871
MAS1L	0	genome.wustl.edu	37	6	29455155	29455156	+	Frame_Shift_Ins	INS	-	-	AC			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	29455155	29455156	-	AC	INS	MAS1L	ENST00000377127	human	ensembl	74_37	-1	known	frame_shift_ins	c.525_524	p.L176fs	0.049:0.055	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	MAS1L	HGNC	ENSG00000204687				99	0	0	89	19	17.5926
HLA-J	0	genome.wustl.edu	37	6	29975966	29975967	+	RNA	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	29975966	29975967	-	C	INS	HLA-J	ENST00000462773	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.073:0.011	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622				73	0	0	33	9	21.4286
HLA-B	0	genome.wustl.edu	37	6	31323363	31323363	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	31323363	31323363	G	-	DEL	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	frame_shift_del	c.626	p.P209fs	0.142	pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-B	HGNC	ENSG00000234745				252	0	0	230	64	21.7687
DDX39B	0	genome.wustl.edu	37	6	31504446	31504446	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	31504446	31504446	A	-	DEL	DDX39B	ENST00000417556	human	ensembl	74_37	-1	known	frame_shift_del	c.492	p.F164fs	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX39B	HGNC	ENSG00000198563				78	0	0	71	11	13.4146
SAPCD1	0	genome.wustl.edu	37	6	31731875	31731876	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	31731875	31731876	-	C	INS	SAPCD1	ENST00000415669	human	ensembl	74_37	+1	known	frame_shift_ins	c.290_291	p.L100fs	0.000:0.002	pfam_APC_dom	pfam_APC_dom	-	no_errors	SAPCD1	HGNC	ENSG00000228727				105	0	0	85	24	22.0183
LSM2	0	genome.wustl.edu	37	6	31765402	31765402	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	31765402	31765402	A	-	DEL	LSM2	ENST00000470083	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LSM2	HGNC	ENSG00000204392				51	0	0	30	6	16.6667
NELFE	0	genome.wustl.edu	37	6	31926206	31926206	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	31926206	31926206	G	-	DEL	NELFE	ENST00000375429	human	ensembl	74_37	-1	known	frame_shift_del	c.18	p.G7fs	0.996	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NELFE	HGNC	ENSG00000204356				158	0	0	121	21	14.7887
BTNL2	0	genome.wustl.edu	37	6	32364081	32364081	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	32364081	32364081	G	-	DEL	BTNL2	ENST00000454136	human	ensembl	74_37	-1	known	frame_shift_del	c.813	p.K272fs	0.002	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	BTNL2	HGNC	ENSG00000204290				61	0	0	51	14	21.5385
HLA-DOA	0	genome.wustl.edu	37	6	32976072	32976072	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	32976072	32976072	A	-	DEL	HLA-DOA	ENST00000467465	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	HLA-DOA	HGNC	ENSG00000204252				68	0	0	47	12	20.339
COL11A2	0	genome.wustl.edu	37	6	33152074	33152075	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	33152074	33152075	-	G	INS	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	frame_shift_ins	c.967_966	p.T322fs	0.999:0.989	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				104	0	0	66	18	21.4286
C6orf89	0	genome.wustl.edu	37	6	36867370	36867371	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	36867370	36867371	-	C	INS	C6orf89	ENST00000355190	human	ensembl	74_37	+1	known	frame_shift_ins	c.171_172	p.Q60fs	0.997:0.991	NULL	NULL	-	no_errors	C6orf89	HGNC	ENSG00000198663				99	0	0	74	13	14.9425
CUL9	0	genome.wustl.edu	37	6	43191022	43191023	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	43191022	43191023	AG	-	DEL	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	frame_shift_del	c.7171_7172	p.D2392fs	0.619:0.637	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				16	0	0	12	7	36.8421
GPR110	0	genome.wustl.edu	37	6	46977604	46977604	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	46977604	46977604	A	-	DEL	GPR110	ENST00000371253	human	ensembl	74_37	-1	known	frame_shift_del	c.1567	p.S523fs	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292				55	0	0	32	12	27.2727
DST	0	genome.wustl.edu	37	6	56716254	56716255	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	56716254	56716255	-	T	INS	DST	ENST00000370754	human	ensembl	74_37	-1	known	frame_shift_ins	c.566_565	p.R189fs	1.000:1.000	superfamily_CH-domain,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				65	0	0	51	18	26.087
SMAP1	0	genome.wustl.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	71508370	71508370	A	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.506	p.K172fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				9	0	0	6	6	50
COL12A1	0	genome.wustl.edu	37	6	75797397	75797397	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	75797397	75797397	G	-	DEL	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	frame_shift_del	c.9077	p.P3026fs	1.000	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				119	0	0	88	19	17.757
DOPEY1	0	genome.wustl.edu	37	6	83838979	83838980	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	83838979	83838980	-	T	INS	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	frame_shift_ins	c.2093_2094	p.S700fs	0.020:0.002	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				102	0	0	73	20	21.5054
ORC3	0	genome.wustl.edu	37	6	88318838	88318838	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	88318838	88318838	A	-	DEL	ORC3	ENST00000257789	human	ensembl	74_37	+1	known	frame_shift_del	c.604	p.R204fs	1.000	pfam_ORC3	pfam_ORC3	-	no_errors	ORC3	HGNC	ENSG00000135336				92	0	0	70	16	18.6047
MDN1	0	genome.wustl.edu	37	6	90432675	90432675	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	90432675	90432675	T	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.5966	p.K1989fs	1.000	superfamily_P-loop_NTPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				203	2	0.97561	204	56	21.5385
MAP3K7	0	genome.wustl.edu	37	6	91226170	91226170	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	6	91226170	91226170	A	-	DEL	MAP3K7	ENST00000479630	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.947	-	-	-	no_errors	MAP3K7	HGNC	ENSG00000135341				55	0	0	27	6	18.1818
SRRT	0	genome.wustl.edu	37	7	100479331	100479332	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	100479331	100479332	-	G	INS	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	frame_shift_ins	c.303_304	p.G104fs	0.996:1.000	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087				101	0	0	76	20	20.8333
AP1S1	0	genome.wustl.edu	37	7	100802405	100802405	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	100802405	100802405	G	-	DEL	AP1S1	ENST00000337619	human	ensembl	74_37	+1	known	frame_shift_del	c.357	p.D122fs	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP1S1	HGNC	ENSG00000106367				47	0	0	47	11	18.9655
CUX1	0	genome.wustl.edu	37	7	101870783	101870784	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	101870783	101870784	-	C	INS	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	frame_shift_ins	c.3300_3301	p.E1101fs	0.000:0.950	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				131	0	0	118	36	23.3766
BCAP29	0	genome.wustl.edu	37	7	107234540	107234540	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	107234540	107234540	T	-	DEL	BCAP29	ENST00000379119	human	ensembl	74_37	+1	known	frame_shift_del	c.334	p.W114fs	1.000	pfam_Bap31	pfam_Bap31	-	no_errors	BCAP29	HGNC	ENSG00000075790				41	0	0	44	9	16.9811
SCIN	0	genome.wustl.edu	37	7	12680083	12680083	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	12680083	12680083	C	-	DEL	SCIN	ENST00000297029	human	ensembl	74_37	+1	known	frame_shift_del	c.1522	p.P509fs	0.046	NULL	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747				40	0	0	14	26	65
SND1	0	genome.wustl.edu	37	7	127724828	127724828	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	127724828	127724828	C	-	DEL	SND1	ENST00000354725	human	ensembl	74_37	+1	known	frame_shift_del	c.2163	p.P723fs	1.000	pfam_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				101	0	0	43	17	28.3333
C7orf49	0	genome.wustl.edu	37	7	134851448	134851448	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	134851448	134851448	C	-	DEL	C7orf49	ENST00000393114	human	ensembl	74_37	-1	known	frame_shift_del	c.389	p.G130fs	0.000	NULL	NULL	-	no_errors	C7orf49	HGNC	ENSG00000122783				141	0	0	120	40	25
KIAA1549	0	genome.wustl.edu	37	7	138601643	138601643	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	138601643	138601643	G	-	DEL	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	frame_shift_del	c.2729	p.P910fs	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				40	0	0	25	13	34.2105
EPHB6	0	genome.wustl.edu	37	7	142561448	142561448	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	142561448	142561448	G	-	DEL	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	frame_shift_del	c.160	p.W56fs	0.984	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				102	0	0	74	15	16.8539
KMT2C	0	genome.wustl.edu	37	7	151842327	151842328	+	Frame_Shift_Ins	INS	-	-	GGATTTC			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	151842327	151842328	-	GGATTTC	INS	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_ins	c.14256_14255	p.L4753fs	0.974:1.000	smart_FYrich_C	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				105	0	0	105	8	7.07965
HOXA2	0	genome.wustl.edu	37	7	27140493	27140493	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	27140493	27140493	A	-	DEL	HOXA2	ENST00000222718	human	ensembl	74_37	-1	known	frame_shift_del	c.983	p.F328fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA2	HGNC	ENSG00000105996				125	0	0	92	32	25.8065
AEBP1	0	genome.wustl.edu	37	7	44146447	44146447	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	44146447	44146447	C	-	DEL	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	frame_shift_del	c.556	p.S188fs	0.004	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				34	0	0	21	4	16
DAGLB	0	genome.wustl.edu	37	7	6474591	6474591	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	6474591	6474591	C	-	DEL	DAGLB	ENST00000297056	human	ensembl	74_37	-1	known	frame_shift_del	c.480	p.M162fs	0.981	NULL	pfam_Lipase_3	-	no_errors	DAGLB	HGNC	ENSG00000164535				152	1	0.653595	79	60	43.1655
MAGI2	0	genome.wustl.edu	37	7	77998478	77998480	+	In_Frame_Del	DEL	ATA	ATA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	ATA	ATA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	77998478	77998480	ATA	-	DEL	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	in_frame_del	c.1098_1096	p.Y366in_frame_del	1.000:1.000:1.000	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				47	0	0	47	8	14.5455
AKAP9	0	genome.wustl.edu	37	7	91732039	91732039	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	91732039	91732039	G	-	DEL	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	frame_shift_del	c.11241	p.Q3750fs	1.000	pfam_PACT_domain	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				281	1	0.35461	233	40	14.652
ANKIB1	0	genome.wustl.edu	37	7	91936914	91936914	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	91936914	91936914	A	-	DEL	ANKIB1	ENST00000265742	human	ensembl	74_37	+1	known	frame_shift_del	c.430	p.N146fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629				45	0	0	41	17	29.3103
LOC101927550	0	genome.wustl.edu	37	7	98630575	98630575	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	7	98630575	98630575	A	-	DEL	LOC101927550	ENST00000360902	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC004893.11	Clone_based_vega_gene	ENSG00000242687				37	0	0	17	8	32
VPS13B	0	genome.wustl.edu	37	8	100050671	100050671	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	100050671	100050671	T	-	DEL	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	frame_shift_del	c.168	p.L58fs	0.024	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				24	0	0	21	6	22.2222
POLR2K	0	genome.wustl.edu	37	8	101164033	101164033	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	101164033	101164033	T	-	DEL	POLR2K	ENST00000519765	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	POLR2K	HGNC	ENSG00000147669				21	0	0	23	4	14.8148
NACAP1	0	genome.wustl.edu	37	8	102381883	102381883	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	102381883	102381883	A	-	DEL	NACAP1	ENST00000419462	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.879	-	-	-	no_errors	NACAP1	HGNC	ENSG00000228224				20	0	0	11	12	52.1739
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				123	1	0.806452	98	52	34.6667
DCAF13	0	genome.wustl.edu	37	8	104439487	104439487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	104439487	104439487	T	-	DEL	DCAF13	ENST00000519682	human	ensembl	74_37	+1	putative	frame_shift_del	c.619	p.F209fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				32	0	0	36	4	10
RIMS2	0	genome.wustl.edu	37	8	104933920	104933921	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	104933920	104933921	-	A	INS	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	frame_shift_ins	c.2104_2105	p.M704fs	1.000:1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				64	0	0	77	10	11.4943
XKR6	0	genome.wustl.edu	37	8	11058234	11058234	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	11058234	11058234	G	-	DEL	XKR6	ENST00000416569	human	ensembl	74_37	-1	known	frame_shift_del	c.615	p.M206fs	0.993	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR6	HGNC	ENSG00000171044				34	0	0	48	7	12.7273
FER1L6	0	genome.wustl.edu	37	8	125080031	125080031	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	125080031	125080031	A	-	DEL	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	frame_shift_del	c.3702	p.G1237fs	0.152	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				33	0	0	58	6	9.375
AGO2	0	genome.wustl.edu	37	8	141554345	141554345	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	141554345	141554345	G	-	DEL	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	frame_shift_del	c.1806	p.A603fs	0.203	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				281	1	0.35461	321	50	13.4771
ZC3H3	0	genome.wustl.edu	37	8	144620415	144620415	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	144620415	144620415	G	-	DEL	ZC3H3	ENST00000262577	human	ensembl	74_37	-1	known	frame_shift_del	c.1122	p.S375fs	0.515	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H3	HGNC	ENSG00000014164				149	0	0	167	39	18.932
GRINA	0	genome.wustl.edu	37	8	145065718	145065718	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	145065718	145065718	C	-	DEL	GRINA	ENST00000313269	human	ensembl	74_37	+1	known	frame_shift_del	c.327	p.N112fs	0.916	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	GRINA	HGNC	ENSG00000178719				26	0	0	23	19	45.2381
HSF1	0	genome.wustl.edu	37	8	145537589	145537589	+	RNA	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	145537589	145537589	G	-	DEL	HSF1	ENST00000528842	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.010	-	-	-	no_errors	HSF1	HGNC	ENSG00000185122				77	0	0	87	18	17.1429
DGAT1	0	genome.wustl.edu	37	8	145541487	145541488	+	Splice_Site	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	145541487	145541488	-	G	INS	DGAT1	ENST00000332324	human	ensembl	74_37	-1	known	splice_site_ins	c.856-3_856-2	e10-2	0.999:0.543	-	-	-	no_errors	DGAT1	HGNC	ENSG00000185000				31	0	0	33	9	21.4286
MSR1	0	genome.wustl.edu	37	8	16012627	16012628	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	16012627	16012628	-	T	INS	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	frame_shift_ins	c.844_843	p.G281fs	1.000:1.000	pfam_Collagen	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				65	0	0	62	14	18.4211
SLC7A2	0	genome.wustl.edu	37	8	17406329	17406330	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	17406329	17406330	-	A	INS	SLC7A2	ENST00000004531	human	ensembl	74_37	+1	known	frame_shift_ins	c.795_796	p.N266fs	0.997:1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989				78	0	0	111	13	10.4839
MTUS1	0	genome.wustl.edu	37	8	17504627	17504628	+	RNA	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	17504627	17504628	AA	-	DEL	MTUS1	ENST00000518889	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MTUS1	HGNC	ENSG00000129422				33	0	0	42	19	31.1475
PSD3	0	genome.wustl.edu	37	8	18413785	18413785	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	18413785	18413785	G	-	DEL	PSD3	ENST00000440756	human	ensembl	74_37	-1	known	frame_shift_del	c.2868	p.D957fs	0.000	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	PSD3	HGNC	ENSG00000156011				210	0	0	222	51	18.6813
LOXL2	0	genome.wustl.edu	37	8	23155605	23155605	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	23155605	23155605	T	-	DEL	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	frame_shift_del	c.2276	p.K759fs	0.994	NULL	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				59	0	0	36	7	16.2791
ENTPD4	0	genome.wustl.edu	37	8	23292044	23292045	+	RNA	INS	-	-	CA			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	23292044	23292045	-	CA	INS	ENTPD4	ENST00000522913	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ENTPD4	HGNC	ENSG00000197217				27	0	0	34	11	24.4444
DOCK5	0	genome.wustl.edu	37	8	25240190	25240190	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	25240190	25240190	A	-	DEL	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	frame_shift_del	c.4027	p.R1345fs	1.000	NULL	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				19	0	0	7	4	36.3636
TUBBP1	0	genome.wustl.edu	37	8	30209456	30209456	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	30209456	30209456	A	-	DEL	TUBBP1	ENST00000518096	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP1	HGNC	ENSG00000127589				27	0	0	21	6	22.2222
KCNU1	0	genome.wustl.edu	37	8	36768517	36768518	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	36768517	36768518	-	C	INS	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	frame_shift_ins	c.2401_2402	p.P804fs	0.083:0.116	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				115	0	0	132	20	13.1579
GINS4	0	genome.wustl.edu	37	8	41397247	41397247	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	41397247	41397247	G	-	DEL	GINS4	ENST00000276533	human	ensembl	74_37	+1	known	frame_shift_del	c.348	p.E118fs	0.251	pfam_GINS_complex,pirsf_GINS_Sld5	pfam_GINS_complex,pirsf_GINS_Sld5	-	no_errors	GINS4	HGNC	ENSG00000147536				105	0	0	118	21	15.1079
ENSG00000253389	0	genome.wustl.edu	37	8	41519208	41519209	+	RNA	DEL	GA	GA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	41519208	41519209	GA	-	DEL	ENSG00000253389	ENST00000520418	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	RP11-930P14.1	Clone_based_vega_gene	ENSG00000253389				99	0	0	71	18	20.2247
IKBKB	0	genome.wustl.edu	37	8	42176208	42176208	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	42176208	42176208	T	-	DEL	IKBKB	ENST00000522785	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.111	-	-	-	no_errors	IKBKB	HGNC	ENSG00000104365				44	0	0	45	13	22.4138
RB1CC1	0	genome.wustl.edu	37	8	53569839	53569839	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	53569839	53569839	T	-	DEL	RB1CC1	ENST00000025008	human	ensembl	74_37	-1	known	frame_shift_del	c.2550	p.V851fs	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287				49	0	0	33	9	21.4286
RP1	0	genome.wustl.edu	37	8	55533979	55533979	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	55533979	55533979	C	-	DEL	RP1	ENST00000220676	human	ensembl	74_37	+1	known	frame_shift_del	c.453	p.P153fs	0.069	smart_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				121	0	0	155	30	16.2162
MCPH1	0	genome.wustl.edu	37	8	6479066	6479067	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	6479066	6479067	-	C	INS	MCPH1	ENST00000344683	human	ensembl	74_37	+1	known	frame_shift_ins	c.2306_2307	p.V772fs	0.874:0.878	superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	pfam_Microcephalin,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom,prints_BRCA1	-	no_errors	MCPH1	HGNC	ENSG00000147316				87	0	0	117	18	13.3333
CYP7B1	0	genome.wustl.edu	37	8	65509466	65509466	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	65509466	65509466	A	-	DEL	CYP7B1	ENST00000310193	human	ensembl	74_37	-1	known	frame_shift_del	c.1254	p.F418fs	0.701	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817				35	0	0	32	9	21.9512
SGK3	0	genome.wustl.edu	37	8	67716612	67716612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	67716612	67716612	A	-	DEL	SGK3	ENST00000345714	human	ensembl	74_37	+1	known	frame_shift_del	c.183	p.K63fs	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Phox,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	SGK3	HGNC	ENSG00000104205				53	0	0	44	8	15.3846
ARFGEF1	0	genome.wustl.edu	37	8	68128855	68128856	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	68128855	68128856	-	G	INS	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	frame_shift_ins	c.4656_4655	p.P1553fs	0.000:0.000	NULL	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				91	0	0	75	8	9.63855
TRPA1	0	genome.wustl.edu	37	8	72958791	72958792	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	72958791	72958792	-	T	INS	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	frame_shift_ins	c.2018_2017	p.T673fs	0.000:0.001	NULL	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				48	0	0	94	15	13.7615
TRPA1	0	genome.wustl.edu	37	8	72958792	72958792	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	72958792	72958792	T	-	DEL	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	frame_shift_del	c.2017	p.T673fs	0.001	NULL	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				48	0	0	93	16	14.6789
E2F5	0	genome.wustl.edu	37	8	86127123	86127123	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	86127123	86127123	A	-	DEL	E2F5	ENST00000519128	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	E2F5	HGNC	ENSG00000133740				8	0	0	5	3	37.5
CNGB3	0	genome.wustl.edu	37	8	87645015	87645015	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	87645015	87645015	A	-	DEL	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	frame_shift_del	c.1285	p.S429fs	0.003	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289				32	0	0	31	6	16.2162
ESRP1	0	genome.wustl.edu	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	95686611	95686611	A	-	DEL	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	frame_shift_del	c.1528	p.N512fs	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413				77	0	0	79	7	8.13953
SNORA72	0	genome.wustl.edu	37	8	99054504	99054504	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	99054504	99054504	T	-	DEL	SNORA72	ENST00000501016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	KB-1208A12.3	Clone_based_vega_gene	ENSG00000245970				18	0	0	13	6	31.5789
SNORA72	0	genome.wustl.edu	37	8	99054837	99054838	+	RNA	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	8	99054837	99054838	AA	-	DEL	SNORA72	ENST00000501016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.049:0.047	-	-	-	no_errors	KB-1208A12.3	Clone_based_vega_gene	ENSG00000245970				45	0	0	35	19	35.1852
SMC2	0	genome.wustl.edu	37	9	106885501	106885501	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	106885501	106885501	A	-	DEL	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	frame_shift_del	c.2245	p.T751fs	0.998	superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				45	0	0	47	20	29.8507
FKBP15	0	genome.wustl.edu	37	9	115941002	115941002	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	115941002	115941002	T	-	DEL	FKBP15	ENST00000238256	human	ensembl	74_37	-1	known	frame_shift_del	c.1994	p.K665fs	1.000	superfamily_Regulat_G_prot_signal_superfam	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321				22	0	0	14	8	36.3636
PRPF4	0	genome.wustl.edu	37	9	116045260	116045261	+	RNA	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	116045260	116045261	-	A	INS	PRPF4	ENST00000488937	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PRPF4	HGNC	ENSG00000136875				22	0	0	11	4	26.6667
POLE3	0	genome.wustl.edu	37	9	116172488	116172489	+	RNA	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	116172488	116172489	-	C	INS	POLE3	ENST00000475080	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996:0.127	-	-	-	no_errors	POLE3	HGNC	ENSG00000148229				40	0	0	28	9	24.3243
ZNF618	0	genome.wustl.edu	37	9	116812464	116812464	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	116812464	116812464	A	-	DEL	ZNF618	ENST00000470105	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZNF618	HGNC	ENSG00000157657				83	0	0	53	41	43.617
MVB12B	0	genome.wustl.edu	37	9	129243627	129243627	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	129243627	129243627	T	-	DEL	MVB12B	ENST00000485886	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MVB12B	HGNC	ENSG00000196814				176	0	0	133	41	23.5632
GOLGA2	0	genome.wustl.edu	37	9	131019390	131019390	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	131019390	131019390	A	-	DEL	GOLGA2	ENST00000421699	human	ensembl	74_37	-1	known	frame_shift_del	c.2965	p.Y989fs	1.000	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110				197	0	0	178	53	22.9437
ASB6	0	genome.wustl.edu	37	9	132400192	132400193	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	132400192	132400193	CA	-	DEL	ASB6	ENST00000277458	human	ensembl	74_37	-1	known	frame_shift_del	c.1143_1142	p.V381fs	0.125:0.615	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB6	HGNC	ENSG00000148331				98	0	0	78	13	14.2857
FNBP1	0	genome.wustl.edu	37	9	132678317	132678318	+	RNA	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	132678317	132678318	-	A	INS	FNBP1	ENST00000462766	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	FNBP1	HGNC	ENSG00000187239				23	0	0	13	3	18.75
NUP214	0	genome.wustl.edu	37	9	134003995	134003996	+	RNA	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	134003995	134003996	AA	-	DEL	NUP214	ENST00000526412	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	NUP214	HGNC	ENSG00000126883				18	0	0	7	4	36.3636
ENSG00000236986	0	genome.wustl.edu	37	9	134008392	134008392	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	134008392	134008392	T	-	DEL	ENSG00000236986	ENST00000587264	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-544A12.4	Clone_based_vega_gene	ENSG00000236986				38	0	0	20	7	25.9259
SETX	0	genome.wustl.edu	37	9	135158548	135158549	+	RNA	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	135158548	135158549	AA	-	DEL	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.003	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				16	0	0	8	15	65.2174
SLC2A6	0	genome.wustl.edu	37	9	136341418	136341419	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	136341418	136341419	-	C	INS	SLC2A6	ENST00000371899	human	ensembl	74_37	-1	known	frame_shift_ins	c.503_502	p.A168fs	0.978:0.972	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A6	HGNC	ENSG00000160326				76	0	0	75	18	19.3548
LINC00094	0	genome.wustl.edu	37	9	136899776	136899776	+	RNA	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	136899776	136899776	C	-	DEL	LINC00094	ENST00000605164	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00094	HGNC	ENSG00000235106				65	0	0	45	21	31.8182
CAMSAP1	0	genome.wustl.edu	37	9	138713232	138713233	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	138713232	138713233	-	G	INS	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	frame_shift_ins	c.3308_3307	p.R1103fs	0.819:0.823	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				97	0	0	57	15	20.8333
DPP7	0	genome.wustl.edu	37	9	140006327	140006327	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	140006327	140006327	C	-	DEL	DPP7	ENST00000371579	human	ensembl	74_37	-1	known	frame_shift_del	c.1205	p.G402fs	0.000	pfam_Peptidase_S28	pfam_Peptidase_S28,pfam_AB_hydrolase_1	-	no_errors	DPP7	HGNC	ENSG00000176978				40	0	0	27	9	25
PSIP1	0	genome.wustl.edu	37	9	15472612	15472613	+	RNA	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	15472612	15472613	AA	-	DEL	PSIP1	ENST00000495873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985				56	0	0	51	13	20.3125
MLLT3	0	genome.wustl.edu	37	9	20363376	20363376	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	20363376	20363376	T	-	DEL	MLLT3	ENST00000475957	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MLLT3	HGNC	ENSG00000171843				51	0	0	39	12	23.5294
IFT74	0	genome.wustl.edu	37	9	27036478	27036479	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	27036478	27036479	AA	-	DEL	IFT74	ENST00000429045	human	ensembl	74_37	+1	known	frame_shift_del	c.1085_1086	p.N364fs	0.010:0.008	NULL	NULL	-	no_errors	IFT74	HGNC	ENSG00000096872				55	0	0	26	8	23.5294
TAF1L	0	genome.wustl.edu	37	9	32633025	32633025	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	32633025	32633025	T	-	DEL	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	frame_shift_del	c.2553	p.A852fs	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				190	0	0	125	38	23.3129
DNAJA1	0	genome.wustl.edu	37	9	33026949	33026949	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	33026949	33026949	T	-	DEL	DNAJA1	ENST00000330899	human	ensembl	74_37	+1	known	frame_shift_del	c.271	p.F92fs	1.000	superfamily_DnaJ_domain	pfam_DnaJ_C,pfam_DnaJ_domain,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA1	HGNC	ENSG00000086061				80	0	0	49	17	25.7576
DNAJB5	0	genome.wustl.edu	37	9	34996554	34996554	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	34996554	34996554	C	-	DEL	DNAJB5	ENST00000454002	human	ensembl	74_37	+1	known	frame_shift_del	c.720	p.P242fs	1.000	superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB5	HGNC	ENSG00000137094				63	0	0	54	14	20.5882
FAM214B	0	genome.wustl.edu	37	9	35108148	35108148	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	35108148	35108148	C	-	DEL	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	frame_shift_del	c.124	p.A42fs	0.584	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238				33	0	0	34	14	29.1667
JAK2	0	genome.wustl.edu	37	9	5126824	5126825	+	RNA	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	5126824	5126825	-	T	INS	JAK2	ENST00000487310	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015:0.014	-	-	-	no_errors	JAK2	HGNC	ENSG00000096968				39	0	0	17	9	34.6154
VPS13A	0	genome.wustl.edu	37	9	79999547	79999548	+	In_Frame_Ins	INS	-	-	TGA			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	79999547	79999548	-	TGA	INS	VPS13A	ENST00000357409	human	ensembl	74_37	+1	known	in_frame_ins	c.9236_9237	p.3083in_frame_insD	1.000:0.999	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				49	0	0	40	11	21.5686
ENSG00000230303	0	genome.wustl.edu	37	9	88400990	88400990	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	88400990	88400990	T	-	DEL	ENSG00000230303	ENST00000439544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	RP11-213G2.2	Clone_based_vega_gene	ENSG00000230303				54	0	0	52	15	22.3881
NAA35	0	genome.wustl.edu	37	9	88631565	88631566	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	88631565	88631566	-	A	INS	NAA35	ENST00000361671	human	ensembl	74_37	+1	known	frame_shift_ins	c.1680_1681	p.T562fs	1.000:1.000	NULL	pfam_NatC_AcTrfase_Mak10	-	no_errors	NAA35	HGNC	ENSG00000135040				52	0	0	33	9	21.4286
CDK20	0	genome.wustl.edu	37	9	90582462	90582463	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	90582462	90582463	-	G	INS	CDK20	ENST00000325303	human	ensembl	74_37	-1	known	frame_shift_ins	c.956_955	p.H319fs	0.094:0.178	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK20	HGNC	ENSG00000156345				8	0	0	3	3	50
ECM2	0	genome.wustl.edu	37	9	95285118	95285119	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	95285118	95285119	-	A	INS	ECM2	ENST00000344604	human	ensembl	74_37	-1	known	frame_shift_ins	c.31_30	p.L10fs	0.980:0.490	NULL	pfam_Leu-rich_rpt,pfam_VWF_C,smart_VWF_C,smart_Leu-rich_rpt_typical-subtyp,pfscan_VWF_C	-	no_errors	ECM2	HGNC	ENSG00000106823				66	0	0	45	8	15.0943
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				34	0	0	19	8	29.6296
ATG4A	0	genome.wustl.edu	37	X	107395166	107395166	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	107395166	107395166	A	-	DEL	ATG4A	ENST00000474825	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG4A	HGNC	ENSG00000101844				28	0	0	19	4	17.3913
SLC25A14	0	genome.wustl.edu	37	X	129498774	129498774	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	129498774	129498774	A	-	DEL	SLC25A14	ENST00000471795	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC25A14	HGNC	ENSG00000102078				15	0	0	12	7	36.8421
RBMX2	0	genome.wustl.edu	37	X	129536209	129536209	+	RNA	DEL	C	C	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	129536209	129536209	C	-	DEL	RBMX2	ENST00000469953	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RBMX2	HGNC	ENSG00000134597				17	0	0	9	10	52.6316
USP26	0	genome.wustl.edu	37	X	132161205	132161205	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	132161205	132161205	A	-	DEL	USP26	ENST00000370832	human	ensembl	74_37	-1	known	frame_shift_del	c.1044	p.F348fs	0.541	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				38	0	0	27	16	37.2093
MAP7D3	0	genome.wustl.edu	37	X	135314194	135314194	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	135314194	135314194	G	-	DEL	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	frame_shift_del	c.868	p.Q290fs	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				224	0	0	119	71	37.3684
OFD1	0	genome.wustl.edu	37	X	13787350	13787350	+	RNA	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	13787350	13787350	T	-	DEL	OFD1	ENST00000490265	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	OFD1	HGNC	ENSG00000046651				20	0	0	14	7	33.3333
MAGEC3	0	genome.wustl.edu	37	X	140953263	140953263	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	140953263	140953263	A	-	DEL	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	frame_shift_del	c.130	p.K45fs	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509				44	0	0	43	6	12.2449
CTPS2	0	genome.wustl.edu	37	X	16609020	16609020	+	RNA	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	16609020	16609020	A	-	DEL	CTPS2	ENST00000483053	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTPS2	HGNC	ENSG00000047230				31	0	0	19	13	40.625
CHDC2	0	genome.wustl.edu	37	X	36162895	36162896	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	36162895	36162896	-	T	INS	CHDC2	ENST00000313548	human	ensembl	74_37	+1	known	frame_shift_ins	c.1478_1479	p.L496fs	0.001:0.004	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain	-	no_errors	CHDC2	HGNC	ENSG00000176034				21	0	0	6	2	25
RPGR	0	genome.wustl.edu	37	X	38144935	38144935	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	38144935	38144935	T	-	DEL	RPGR	ENST00000378505	human	ensembl	74_37	-1	known	frame_shift_del	c.3317	p.K1106fs	0.000	NULL	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313				145	0	0	71	59	45.3846
MED14	0	genome.wustl.edu	37	X	40588606	40588607	+	RNA	DEL	AA	AA	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	40588606	40588607	AA	-	DEL	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MED14	HGNC	ENSG00000180182				9	0	0	14	5	26.3158
KDM5C	0	genome.wustl.edu	37	X	53222308	53222309	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	53222308	53222309	-	G	INS	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	frame_shift_ins	c.4524_4523	p.A1509fs	0.000:0.002	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				39	0	0	12	17	58.6207
KLF8	0	genome.wustl.edu	37	X	56291858	56291859	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	56291858	56291859	-	C	INS	KLF8	ENST00000468660	human	ensembl	74_37	+1	known	frame_shift_ins	c.327_328	p.K111fs	0.000:0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF8	HGNC	ENSG00000102349				54	0	0	25	16	39.0244
FAAH2	0	genome.wustl.edu	37	X	57515386	57515387	+	RNA	INS	-	-	TG			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	57515386	57515387	-	TG	INS	FAAH2	ENST00000491179	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	FAAH2	HGNC	ENSG00000165591				28	0	0	18	7	28
FAM155B	0	genome.wustl.edu	37	X	68725672	68725672	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	X	68725672	68725672	A	-	DEL	FAM155B	ENST00000252338	human	ensembl	74_37	+1	known	frame_shift_del	c.547	p.N185fs	0.996	NULL	NULL	-	no_errors	FAM155B	HGNC	ENSG00000130054				42	0	0	24	24	50
USP9Y	0	genome.wustl.edu	37	Y	14847611	14847611	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8591-01A-11D-2394-08	TCGA-BR-8591-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2d807764-06c1-4711-b3ba-939e11723d45	bd35fe5b-c91a-4e25-b964-9c173673af02	Y	14847611	14847611	T	-	DEL	USP9Y	ENST00000338981	human	ensembl	74_37	+1	known	frame_shift_del	c.723	p.F243fs	0.997	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,superfamily_Glycoside_hydrolase_SF,pfscan_Peptidase_C19/C67	-	no_errors	USP9Y	HGNC	ENSG00000114374				13	0	0	7	9	56.25
