Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PAPPA2	0	genome.wustl.edu	37	1	176769239	176769239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	1	176769239	176769239	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.5173	p.V1725I	0.015	superfamily_Notch_dom,smart_Notch_dom	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				42	0	0	53	5	8.62069
CR1	0	genome.wustl.edu	37	1	207753744	207753744	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	1	207753744	207753744	A	C	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	missense	c.5096	p.E1699A	0.001	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				55	0	0	70	6	7.89474
LBR	0	genome.wustl.edu	37	1	225605728	225605728	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	1	225605728	225605728	C	T	SNP	LBR	ENST00000272163	human	ensembl	74_37	-1	known	nonsense	c.795	p.W265*	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815				23	0	0	27	2	6.89655
RPL22	0	genome.wustl.edu	37	1	6253081	6253081	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	1	6253081	6253081	C	T	SNP	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	missense	c.151	p.G51R	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				67	0	0	58	12	17.1429
C1orf173	0	genome.wustl.edu	37	1	75072545	75072545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	1	75072545	75072545	G	A	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.1229	p.P410L	0.146	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				47	0	0	42	6	12.5
PAPSS2	0	genome.wustl.edu	37	10	89504933	89504933	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	10	89504933	89504933	C	T	SNP	PAPSS2	ENST00000456849	human	ensembl	74_37	+1	known	nonsense	c.1666	p.R556*	1.000	pfam_Sulfurylase_cat_dom,tigrfam_Sulphate_adenylyltransferase	pfam_Sulfurylase_cat_dom,pfam_APS_kinase,superfamily_PUA-like_domain,superfamily_P-loop_NTPase,tigrfam_Sulphate_adenylyltransferase,tigrfam_APS_kinase	-	no_errors	PAPSS2	HGNC	ENSG00000198682				17	0	0	26	3	10.3448
ZP1	0	genome.wustl.edu	37	11	60640735	60640735	+	Silent	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	11	60640735	60640735	C	T	SNP	ZP1	ENST00000278853	human	ensembl	74_37	+1	known	silent	c.1213	p.L405	1.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP1	HGNC	ENSG00000149506				73	0	0	90	9	9.09091
KRT86	0	genome.wustl.edu	37	12	52695729	52695729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	12	52695729	52695729	G	A	SNP	KRT86	ENST00000293525	human	ensembl	74_37	+1	known	missense	c.29	p.R10H	0.048	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT86	HGNC	ENSG00000170442				79	0	0	81	6	6.89655
PLXNC1	0	genome.wustl.edu	37	12	94642052	94642052	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	12	94642052	94642052	T	C	SNP	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	missense	c.2642	p.L881P	1.000	superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				17	0	0	23	4	14.8148
TPTE2	0	genome.wustl.edu	37	13	20006620	20006620	+	Silent	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	13	20006620	20006620	C	T	SNP	TPTE2	ENST00000382977	human	ensembl	74_37	-1	known	silent	c.1215	p.S405	0.023	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958				9	0	0	7	4	36.3636
ATP12A	0	genome.wustl.edu	37	13	25274960	25274960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	13	25274960	25274960	C	T	SNP	ATP12A	ENST00000218548	human	ensembl	74_37	+1	known	missense	c.1799	p.P600L	1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP12A	HGNC	ENSG00000075673				22	0	0	41	3	6.81818
OR4M1	0	genome.wustl.edu	37	14	20248864	20248864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	14	20248864	20248864	G	A	SNP	OR4M1	ENST00000315957	human	ensembl	74_37	+1	known	missense	c.383	p.R128Q	0.299	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M1	HGNC	ENSG00000176299				71	0	0	91	18	16.5138
SNORD116-20	0	genome.wustl.edu	37	15	25334031	25334031	+	RNA	SNP	G	G	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	15	25334031	25334031	G	T	SNP	SNORD116-20	ENST00000384507	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.930	-	-	-	no_errors	SNORD116-20	HGNC	ENSG00000261069				56	0	0	83	10	10.7527
FMN1	0	genome.wustl.edu	37	15	33360043	33360043	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	15	33360043	33360043	C	A	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	nonsense	c.43	p.E15*	0.002	NULL	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				17	0	0	28	2	6.66667
CTCF	0	genome.wustl.edu	37	16	67650711	67650711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	16	67650711	67650711	G	A	SNP	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	missense	c.1016	p.R339Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				79	0	0	84	15	15.1515
CDH1	0	genome.wustl.edu	37	16	68842633	68842633	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	16	68842633	68842633	A	G	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.569	p.Y190C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				14	0	0	18	3	14.2857
DDX52	0	genome.wustl.edu	37	17	35993390	35993390	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	17	35993390	35993390	C	A	SNP	DDX52	ENST00000349699	human	ensembl	74_37	-1	known	missense	c.345	p.K115N	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX52	HGNC	ENSG00000141141				24	0	0	21	2	8.69565
GPR179	0	genome.wustl.edu	37	17	36499035	36499035	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	17	36499035	36499035	T	C	SNP	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	missense	c.638	p.K213R	1.000	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888				62	0	0	65	13	16.6667
MYH10	0	genome.wustl.edu	37	17	8424505	8424505	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	17	8424505	8424505	G	T	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.2026	p.Q676K	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				64	0	0	78	12	13.3333
ZNF536	0	genome.wustl.edu	37	19	30935607	30935607	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	19	30935607	30935607	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.1138	p.R380W	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				56	0	0	95	10	9.52381
NLRP5	0	genome.wustl.edu	37	19	56565060	56565060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	19	56565060	56565060	C	T	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	+1	known	missense	c.3185	p.S1062L	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487				29	0	0	26	5	16.129
FBN3	0	genome.wustl.edu	37	19	8176641	8176641	+	Silent	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	19	8176641	8176641	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	silent	c.3975	p.C1325	0.043	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				37	0	0	48	3	5.88235
POTEE	0	genome.wustl.edu	37	2	132021446	132021446	+	Silent	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	2	132021446	132021446	C	T	SNP	POTEE	ENST00000356920	human	ensembl	74_37	+1	known	silent	c.2418	p.T806	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEE	HGNC	ENSG00000188219				92	0	0	117	13	10
TTN	0	genome.wustl.edu	37	2	179640850	179640850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	2	179640850	179640850	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.5741	p.A1914V	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				65	0	0	84	5	5.61798
DNAH7	0	genome.wustl.edu	37	2	196689076	196689076	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	2	196689076	196689076	C	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.9194	p.R3065Q	0.832	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				39	0	0	48	4	7.69231
C2orf44	0	genome.wustl.edu	37	2	24253988	24253988	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	2	24253988	24253988	G	A	SNP	C2orf44	ENST00000295148	human	ensembl	74_37	-1	known	missense	c.1981	p.P661S	1.000	NULL	NULL	-	no_errors	C2orf44	HGNC	ENSG00000163026				29	0	0	22	2	8.33333
XKR7	0	genome.wustl.edu	37	20	30585193	30585193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	20	30585193	30585193	C	T	SNP	XKR7	ENST00000562532	human	ensembl	74_37	+1	known	missense	c.1673	p.T558M	0.428	NULL	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000260903				46	0	0	58	6	9.375
SLC32A1	0	genome.wustl.edu	37	20	37356775	37356775	+	Silent	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	20	37356775	37356775	C	T	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	silent	c.1071	p.V357	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				24	0	0	34	5	12.8205
MC3R	0	genome.wustl.edu	37	20	54824440	54824440	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	20	54824440	54824440	G	A	SNP	MC3R	ENST00000243911	human	ensembl	74_37	+1	known	missense	c.541	p.V181I	0.836	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_3_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC3R	HGNC	ENSG00000124089				54	0	0	67	7	9.45946
GRIK1	0	genome.wustl.edu	37	21	30949440	30949440	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	21	30949440	30949440	G	T	SNP	GRIK1	ENST00000535441	human	ensembl	74_37	-1	known	missense	c.1980	p.F660L	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189				37	0	0	57	6	9.52381
KY	0	genome.wustl.edu	37	3	134322629	134322629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	3	134322629	134322629	C	T	SNP	KY	ENST00000423778	human	ensembl	74_37	-1	known	missense	c.1778	p.R593Q	0.997	NULL	pfam_Transglutaminase-like,smart_Transglutaminase-like	-	no_errors	KY	HGNC	ENSG00000174611				20	0	0	38	2	5
C3orf20	0	genome.wustl.edu	37	3	14744671	14744671	+	Silent	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	3	14744671	14744671	G	A	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	silent	c.780	p.P260	0.000	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				67	0	0	140	13	8.49673
SLIT2	0	genome.wustl.edu	37	4	20619221	20619221	+	Silent	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	4	20619221	20619221	G	A	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	silent	c.4296	p.G1432	0.633	smart_Fol_N,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				12	0	0	22	2	8.33333
PCDHA2	0	genome.wustl.edu	37	5	140174652	140174652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	5	140174652	140174652	G	A	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	missense	c.103	p.V35I	0.235	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969				31	0	0	53	7	11.6667
MTMR12	0	genome.wustl.edu	37	5	32239240	32239240	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	5	32239240	32239240	A	C	SNP	MTMR12	ENST00000382142	human	ensembl	74_37	-1	known	missense	c.1211	p.L404R	1.000	NULL	pfam_Myotubularin_assoc	-	no_errors	MTMR12	HGNC	ENSG00000150712				17	0	0	21	6	22.2222
CMYA5	0	genome.wustl.edu	37	5	79025999	79025999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	5	79025999	79025999	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.1411	p.A471T	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				60	0	0	70	5	6.66667
TNXB	0	genome.wustl.edu	37	6	32052314	32052314	+	Silent	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	6	32052314	32052314	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.3321	p.P1107	0.016	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				11	0	0	19	3	13.6364
COL22A1	0	genome.wustl.edu	37	8	139737660	139737660	+	Silent	SNP	G	G	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	8	139737660	139737660	G	T	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	silent	c.2163	p.V721	0.271	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				46	0	0	51	7	12.069
ADRA1A	0	genome.wustl.edu	37	8	26722428	26722428	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	8	26722428	26722428	G	A	SNP	ADRA1A	ENST00000380586	human	ensembl	74_37	-1	known	missense	c.59	p.P20L	0.091	prints_ADRA1A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1A	HGNC	ENSG00000120907				155	1	0.641026	221	21	8.67769
POTEA	0	genome.wustl.edu	37	8	43197470	43197470	+	RNA	SNP	C	C	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	8	43197470	43197470	C	A	SNP	POTEA	ENST00000522175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.787	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877				27	0	0	30	4	11.7647
PCMTD1	0	genome.wustl.edu	37	8	52733242	52733242	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	8	52733242	52733242	C	T	SNP	PCMTD1	ENST00000360540	human	ensembl	74_37	-1	known	missense	c.743	p.R248H	1.000	NULL	pfam_PCMT	-	no_errors	PCMTD1	HGNC	ENSG00000168300				20	0	0	32	9	21.9512
PLAG1	0	genome.wustl.edu	37	8	57079229	57079229	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	8	57079229	57079229	T	C	SNP	PLAG1	ENST00000316981	human	ensembl	74_37	-1	known	missense	c.1076	p.Y359C	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAG1	HGNC	ENSG00000181690				44	0	0	71	5	6.57895
CHD7	0	genome.wustl.edu	37	8	61654739	61654739	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	8	61654739	61654739	C	T	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.748	p.R250C	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				81	0	0	112	11	8.94309
ABO	0	genome.wustl.edu	37	9	136131415	136131415	+	RNA	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	9	136131415	136131415	C	T	SNP	ABO	ENST00000453660	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.053	-	-	-	no_errors	ABO	HGNC	ENSG00000175164				10	0	0	5	6	54.5455
PAK3	0	genome.wustl.edu	37	X	110406248	110406248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	X	110406248	110406248	G	A	SNP	PAK3	ENST00000360648	human	ensembl	74_37	+1	known	missense	c.682	p.A228T	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK3	HGNC	ENSG00000077264				29	0	0	57	7	10.9375
NKAP	0	genome.wustl.edu	37	X	119077495	119077495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	X	119077495	119077495	G	A	SNP	NKAP	ENST00000371410	human	ensembl	74_37	-1	known	missense	c.74	p.S25L	0.004	NULL	pfam_DUF926	-	no_errors	NKAP	HGNC	ENSG00000101882				39	0	0	37	6	13.9535
TENM1	0	genome.wustl.edu	37	X	123525997	123525997	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	X	123525997	123525997	T	C	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.5593	p.T1865A	0.377	tigrfam_YD	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				27	0	0	30	5	14.2857
MAGEA6	0	genome.wustl.edu	37	X	151869826	151869826	+	Silent	SNP	C	C	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	X	151869826	151869826	C	A	SNP	MAGEA6	ENST00000329342	human	ensembl	74_37	+1	known	silent	c.516	p.I172	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA6	HGNC	ENSG00000197172				63	0	0	98	12	10.9091
REPS2	0	genome.wustl.edu	37	X	17153511	17153511	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	X	17153511	17153511	C	T	SNP	REPS2	ENST00000357277	human	ensembl	74_37	+1	known	missense	c.1790	p.P597L	0.679	NULL	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS2	HGNC	ENSG00000169891				104	0	0	111	10	8.26446
TSPAN7	0	genome.wustl.edu	37	X	38420808	38420808	+	Silent	SNP	G	G	A			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	X	38420808	38420808	G	A	SNP	TSPAN7	ENST00000378482	human	ensembl	74_37	+1	known	silent	c.9	p.S3	1.000	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN7	HGNC	ENSG00000156298				28	0	0	32	5	13.5135
TPM3	0	genome.wustl.edu	37	1	154144674	154144674	+	RNA	DEL	A	A	-			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	1	154144674	154144674	A	-	DEL	TPM3	ENST00000469717	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TPM3	HGNC	ENSG00000143549				24	0	0	22	4	15.3846
PIGR	0	genome.wustl.edu	37	1	207110476	207110477	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	1	207110476	207110477	-	G	INS	PIGR	ENST00000356495	human	ensembl	74_37	-1	known	frame_shift_ins	c.1009_1008	p.S336fs	0.000:0.001	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PIGR	HGNC	ENSG00000162896				21	0	0	29	3	9.375
NDUFC2	0	genome.wustl.edu	37	11	77784147	77784147	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	11	77784147	77784147	A	-	DEL	NDUFC2	ENST00000281031	human	ensembl	74_37	-1	known	frame_shift_del	c.207	p.F69fs	0.809	pfam_NADH-UbQ_OxRdtase_b14.5b_su,pirsf_NADH-UbQ_OxRdtase_b14.5b_su	pfam_NADH-UbQ_OxRdtase_b14.5b_su,pirsf_NADH-UbQ_OxRdtase_b14.5b_su	-	no_errors	NDUFC2	HGNC	ENSG00000151366				43	0	0	70	4	5.40541
DLGAP1-AS1	0	genome.wustl.edu	37	18	3597090	3597090	+	RNA	DEL	T	T	-			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	18	3597090	3597090	T	-	DEL	DLGAP1-AS1	ENST00000317114	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DLGAP1-AS1	HGNC	ENSG00000177337				19	0	0	20	3	13.0435
ARL13B	0	genome.wustl.edu	37	3	93754287	93754287	+	Splice_Site	DEL	T	T	-			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	3	93754287	93754287	T	-	DEL	ARL13B	ENST00000539730	human	ensembl	74_37	+1	known	splice_site_del	c.1+2	e0+2	0.000	-	-	-	no_errors	ARL13B	HGNC	ENSG00000169379				20	0	0	23	3	11.5385
ABCF1	0	genome.wustl.edu	37	6	30545854	30545854	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8592-01A-11D-2394-08	TCGA-BR-8592-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	58bdfe8b-b1ef-4d25-b404-c3211aa52c43	eb178e61-6b4e-4662-be78-c8a53a87abe4	6	30545854	30545854	A	-	DEL	ABCF1	ENST00000326195	human	ensembl	74_37	+1	known	frame_shift_del	c.218	p.K76fs	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCF1	HGNC	ENSG00000204574				35	0	0	51	8	13.5593
