Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TCHH	0	genome.wustl.edu	37	1	152084187	152084187	+	Silent	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	152084187	152084187	C	T	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	silent	c.1506	p.R502	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450				151	1	0.657895	214	12	5.30973
CRABP2	0	genome.wustl.edu	37	1	156675185	156675185	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	156675185	156675185	T	A	SNP	CRABP2	ENST00000368221	human	ensembl	74_37	-1	known	missense	c.54	p.E18D	0.436	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	CRABP2	HGNC	ENSG00000143320				171	0	0	100	42	29.5775
CROCC	0	genome.wustl.edu	37	1	17250856	17250856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	17250856	17250856	C	T	SNP	CROCC	ENST00000375541	human	ensembl	74_37	+1	known	missense	c.233	p.S78L	0.962	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453				61	0	0	53	13	19.697
SYT14	0	genome.wustl.edu	37	1	210329223	210329223	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	210329223	210329223	A	C	SNP	SYT14	ENST00000422431	human	ensembl	74_37	+1	known	missense	c.1457	p.H486P	1.000	superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT14	HGNC	ENSG00000143469				75	0	0	56	17	23.2877
KCNH1	0	genome.wustl.edu	37	1	211192300	211192300	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	211192300	211192300	A	T	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	missense	c.857	p.L286H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473				119	0	0	94	29	23.5772
ZBTB40	0	genome.wustl.edu	37	1	22828817	22828817	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	22828817	22828817	G	T	SNP	ZBTB40	ENST00000375647	human	ensembl	74_37	+1	known	missense	c.1050	p.L350F	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677				49	0	0	32	15	31.9149
GJC2	0	genome.wustl.edu	37	1	228346653	228346653	+	Silent	SNP	C	C	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	228346653	228346653	C	G	SNP	GJC2	ENST00000366714	human	ensembl	74_37	+1	known	silent	c.1194	p.T398	0.048	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJC2	HGNC	ENSG00000198835				16	0	0	22	5	18.5185
FAM213B	0	genome.wustl.edu	37	1	2520061	2520061	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	2520061	2520061	A	C	SNP	FAM213B	ENST00000419916	human	ensembl	74_37	+1	known	missense	c.547	p.K183Q	1.000	NULL	superfamily_Thioredoxin-like_fold	-	no_errors	FAM213B	HGNC	ENSG00000157870				154	0	0	131	43	24.7126
ZSCAN20	0	genome.wustl.edu	37	1	33960894	33960894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	33960894	33960894	G	A	SNP	ZSCAN20	ENST00000361328	human	ensembl	74_37	+1	known	missense	c.2950	p.E984K	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903				84	0	0	59	11	15.7143
PODN	0	genome.wustl.edu	37	1	53544289	53544289	+	Silent	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	53544289	53544289	C	T	SNP	PODN	ENST00000312553	human	ensembl	74_37	+1	known	silent	c.1251	p.N417	0.924	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348				119	0	0	128	12	8.57143
CHD5	0	genome.wustl.edu	37	1	6202574	6202574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	6202574	6202574	C	T	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	missense	c.2135	p.R712H	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				90	0	0	70	24	25.5319
PDE4B	0	genome.wustl.edu	37	1	66821300	66821300	+	Silent	SNP	T	T	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	66821300	66821300	T	C	SNP	PDE4B	ENST00000329654	human	ensembl	74_37	+1	known	silent	c.838	p.L280	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4B	HGNC	ENSG00000184588				41	0	0	20	5	20
MCOLN3	0	genome.wustl.edu	37	1	85510984	85510984	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	85510984	85510984	G	A	SNP	MCOLN3	ENST00000370589	human	ensembl	74_37	-1	known	silent	c.60	p.C20	0.267	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732				51	0	0	48	20	29.4118
COL17A1	0	genome.wustl.edu	37	10	105794506	105794506	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	10	105794506	105794506	G	A	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	silent	c.3639	p.I1213	0.269	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618				26	0	0	19	6	24
ADD3	0	genome.wustl.edu	37	10	111885521	111885521	+	RNA	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	10	111885521	111885521	C	T	SNP	ADD3	ENST00000488799	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADD3	HGNC	ENSG00000148700				31	0	0	15	8	34.7826
CHST15	0	genome.wustl.edu	37	10	125804385	125804385	+	Silent	SNP	A	A	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	10	125804385	125804385	A	G	SNP	CHST15	ENST00000346248	human	ensembl	74_37	-1	known	silent	c.597	p.C199	0.993	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	CHST15	HGNC	ENSG00000182022				51	0	0	62	7	10.1449
KIAA1217	0	genome.wustl.edu	37	10	24832059	24832059	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	10	24832059	24832059	C	A	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	nonsense	c.3860	p.S1287*	0.003	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				74	0	0	40	19	32.2034
FRMPD2	0	genome.wustl.edu	37	10	49482599	49482599	+	Silent	SNP	T	T	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	10	49482599	49482599	T	C	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	silent	c.12	p.L4	0.007	NULL	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324				123	0	0	102	40	28.169
SAR1A	0	genome.wustl.edu	37	10	71921335	71921335	+	RNA	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	10	71921335	71921335	C	T	SNP	SAR1A	ENST00000477464	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.362	-	-	-	no_errors	SAR1A	HGNC	ENSG00000079332				49	0	0	26	17	39.5349
ADAMTS8	0	genome.wustl.edu	37	11	130289118	130289118	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	11	130289118	130289118	T	C	SNP	ADAMTS8	ENST00000257359	human	ensembl	74_37	-1	known	missense	c.790	p.N264D	0.998	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS8,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS8	HGNC	ENSG00000134917				192	0	0	167	14	7.73481
TUT1	0	genome.wustl.edu	37	11	62342958	62342958	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	11	62342958	62342958	C	T	SNP	TUT1	ENST00000308436	human	ensembl	74_37	-1	known	missense	c.2347	p.A783T	0.000	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016				130	0	0	104	51	32.9032
FAT3	0	genome.wustl.edu	37	11	92088531	92088531	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	11	92088531	92088531	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.3253	p.G1085S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				79	0	0	47	6	11.3208
OVCH1	0	genome.wustl.edu	37	12	29614836	29614836	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	12	29614836	29614836	T	G	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	missense	c.2231	p.K744T	0.080	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				122	0	0	79	5	5.95238
OR11H6	0	genome.wustl.edu	37	14	20692369	20692369	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	14	20692369	20692369	G	A	SNP	OR11H6	ENST00000315519	human	ensembl	74_37	+1	known	nonsense	c.501	p.W167*	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11H6	HGNC	ENSG00000176219				85	0	0	43	18	29.5082
CHD8	0	genome.wustl.edu	37	14	21883749	21883749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	14	21883749	21883749	C	T	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	missense	c.1952	p.R651Q	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				82	0	0	64	4	5.88235
TMEM229B	0	genome.wustl.edu	37	14	67940343	67940343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	14	67940343	67940343	C	T	SNP	TMEM229B	ENST00000357461	human	ensembl	74_37	-1	known	missense	c.298	p.A100T	1.000	pfam_DUF1113_TMEM229	pfam_DUF1113_TMEM229	-	no_errors	TMEM229B	HGNC	ENSG00000198133				9	0	0	10	6	37.5
DIO2	0	genome.wustl.edu	37	14	80677629	80677629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	14	80677629	80677629	C	T	SNP	DIO2	ENST00000422005	human	ensembl	74_37	-1	known	missense	c.187	p.V63I	1.000	pfam_Iodothyronine_deiodinase	pfam_Iodothyronine_deiodinase	-	no_errors	DIO2	HGNC	ENSG00000211448				53	0	0	25	18	41.8605
DNM1P46	0	genome.wustl.edu	37	15	100340097	100340097	+	RNA	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	15	100340097	100340097	C	T	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				22	0	0	25	5	16.6667
TRPM1	0	genome.wustl.edu	37	15	31334372	31334372	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	15	31334372	31334372	G	A	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	silent	c.1920	p.D640	0.903	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				40	0	0	36	3	7.69231
METTL9	0	genome.wustl.edu	37	16	21629391	21629391	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	16	21629391	21629391	T	A	SNP	METTL9	ENST00000358154	human	ensembl	74_37	+1	known	missense	c.562	p.Y188N	1.000	pfam_DREV_MeTrfase,pfam_Methyltransf_12,pfam_Methyltransf_11	pfam_DREV_MeTrfase,pfam_Methyltransf_12,pfam_Methyltransf_11	-	no_errors	METTL9	HGNC	ENSG00000197006				80	0	0	63	4	5.97015
VWA3A	0	genome.wustl.edu	37	16	22155629	22155629	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	16	22155629	22155629	A	G	SNP	VWA3A	ENST00000389398	human	ensembl	74_37	+1	known	missense	c.2654	p.N885S	0.894	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267				51	0	0	34	3	8.10811
TRIM16L	0	genome.wustl.edu	37	17	18638508	18638508	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	17	18638508	18638508	C	A	SNP	TRIM16L	ENST00000395902	human	ensembl	74_37	+1	known	missense	c.944	p.T315K	0.730	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	TRIM16L	HGNC	ENSG00000108448				112	0	0	110	40	26.6667
ALDH3A1	0	genome.wustl.edu	37	17	19643782	19643782	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	17	19643782	19643782	G	A	SNP	ALDH3A1	ENST00000225740	human	ensembl	74_37	-1	known	silent	c.816	p.Y272	0.033	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A1	HGNC	ENSG00000108602				134	0	0	103	33	24.2647
CORO6	0	genome.wustl.edu	37	17	27943176	27943176	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	17	27943176	27943176	G	A	SNP	CORO6	ENST00000345068	human	ensembl	74_37	-1	known	silent	c.1080	p.D360	0.995	pfam_DUF1900	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO6	HGNC	ENSG00000167549				54	0	0	36	5	12.1951
ATAD5	0	genome.wustl.edu	37	17	29219667	29219667	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	17	29219667	29219667	G	C	SNP	ATAD5	ENST00000321990	human	ensembl	74_37	+1	known	missense	c.4301	p.G1434A	0.002	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208				89	0	0	53	31	36.9048
KRT28	0	genome.wustl.edu	37	17	38954584	38954584	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	17	38954584	38954584	C	T	SNP	KRT28	ENST00000306658	human	ensembl	74_37	-1	known	missense	c.593	p.R198Q	0.991	pfam_IF,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT28	HGNC	ENSG00000173908				109	0	0	103	34	24.8175
EZH1	0	genome.wustl.edu	37	17	40870044	40870044	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	17	40870044	40870044	C	T	SNP	EZH1	ENST00000428826	human	ensembl	74_37	-1	known	missense	c.973	p.E325K	1.000	NULL	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH1	HGNC	ENSG00000108799				40	0	0	29	9	23.6842
KIF19	0	genome.wustl.edu	37	17	72346598	72346598	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	17	72346598	72346598	G	T	SNP	KIF19	ENST00000389916	human	ensembl	74_37	+1	known	missense	c.1272	p.E424D	0.999	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169				24	0	0	21	3	12.5
DNAH17-AS1	0	genome.wustl.edu	37	17	76496420	76496420	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	17	76496420	76496420	G	A	SNP	DNAH17-AS1	ENST00000598378	human	ensembl	74_37	+1	known	missense	c.352	p.V118I	0.998	NULL	NULL	-	no_errors	DNAH17-AS1	HGNC	ENSG00000268470				24	0	0	14	8	36.3636
ENGASE	0	genome.wustl.edu	37	17	77082045	77082045	+	Silent	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	17	77082045	77082045	C	T	SNP	ENGASE	ENST00000579016	human	ensembl	74_37	+1	known	silent	c.1846	p.L616	0.022	NULL	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280				62	0	0	57	13	18.5714
STX8	0	genome.wustl.edu	37	17	9471725	9471725	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	17	9471725	9471725	C	T	SNP	STX8	ENST00000306357	human	ensembl	74_37	-1	known	missense	c.80	p.R27Q	0.997	NULL	pfam_T_SNARE_dom,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX8	HGNC	ENSG00000170310				30	0	0	21	13	38.2353
KATNAL2	0	genome.wustl.edu	37	18	44627365	44627365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	18	44627365	44627365	G	A	SNP	KATNAL2	ENST00000245121	human	ensembl	74_37	+1	known	missense	c.1390	p.E464K	1.000	NULL	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	KATNAL2	HGNC	ENSG00000167216				49	0	0	28	13	31.7073
DSEL	0	genome.wustl.edu	37	18	65179255	65179255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	18	65179255	65179255	C	T	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	missense	c.2621	p.G874E	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				248	0	0	170	56	24.7788
ELL	0	genome.wustl.edu	37	19	18561438	18561438	+	Silent	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	18561438	18561438	C	T	SNP	ELL	ENST00000262809	human	ensembl	74_37	-1	known	silent	c.1314	p.R438	0.172	NULL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL	HGNC	ENSG00000105656				16	0	0	12	6	33.3333
ZNF737	0	genome.wustl.edu	37	19	20735356	20735356	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	20735356	20735356	C	A	SNP	ZNF737	ENST00000427401	human	ensembl	74_37	-1	known	missense	c.151	p.D51Y	0.073	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440				81	0	0	45	9	16.6667
DOT1L	0	genome.wustl.edu	37	19	2217887	2217887	+	Silent	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	2217887	2217887	C	T	SNP	DOT1L	ENST00000398665	human	ensembl	74_37	+1	known	silent	c.2661	p.S887	0.997	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885				25	0	0	21	8	27.5862
ZNF729	0	genome.wustl.edu	37	19	22497338	22497338	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	22497338	22497338	G	T	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.1119	p.E373D	0.994	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				67	0	0	29	8	21.6216
ATP4A	0	genome.wustl.edu	37	19	36050082	36050082	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	36050082	36050082	G	A	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	silent	c.1068	p.S356	0.959	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				207	0	0	116	59	33.7143
ZNF382	0	genome.wustl.edu	37	19	37117675	37117675	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	37117675	37117675	A	C	SNP	ZNF382	ENST00000292928	human	ensembl	74_37	+1	known	missense	c.876	p.E292D	0.996	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF382	HGNC	ENSG00000161298				163	0	0	123	22	15.1724
ZNF383	0	genome.wustl.edu	37	19	37734283	37734283	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	37734283	37734283	G	A	SNP	ZNF383	ENST00000352998	human	ensembl	74_37	+1	known	missense	c.1145	p.R382H	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF383	HGNC	ENSG00000188283				99	0	0	49	18	26.8657
LIG1	0	genome.wustl.edu	37	19	48624487	48624487	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	48624487	48624487	G	A	SNP	LIG1	ENST00000263274	human	ensembl	74_37	-1	known	silent	c.2325	p.Y775	0.953	pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_ATP-dep_C,superfamily_DNA_ligase_ATP-dep_N,superfamily_NA-bd_OB-fold,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG1	HGNC	ENSG00000105486				145	0	0	123	47	27.6471
ALDH16A1	0	genome.wustl.edu	37	19	49967996	49967996	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	49967996	49967996	G	A	SNP	ALDH16A1	ENST00000293350	human	ensembl	74_37	+1	known	silent	c.1545	p.P515	0.000	superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	-	no_errors	ALDH16A1	HGNC	ENSG00000161618				277	0	0	198	69	25.8427
KLK1	0	genome.wustl.edu	37	19	51322476	51322476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	51322476	51322476	C	T	SNP	KLK1	ENST00000301420	human	ensembl	74_37	-1	known	missense	c.763	p.E255K	0.001	superfamily_Trypsin-like_Pept_dom,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	KLK1	HGNC	ENSG00000167748				99	0	0	78	26	25
NLRP4	0	genome.wustl.edu	37	19	56369527	56369527	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	56369527	56369527	G	A	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	silent	c.768	p.P256	0.000	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				142	1	0.699301	108	31	22.3022
ZNF416	0	genome.wustl.edu	37	19	58084322	58084322	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	58084322	58084322	T	C	SNP	ZNF416	ENST00000196489	human	ensembl	74_37	-1	known	missense	c.950	p.H317R	0.564	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF416	HGNC	ENSG00000083817				84	0	0	43	20	31.746
A1BG-AS1	0	genome.wustl.edu	37	19	58864711	58864711	+	RNA	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	58864711	58864711	G	A	SNP	A1BG-AS1	ENST00000593374	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	A1BG-AS1	HGNC	ENSG00000268895				26	0	0	27	9	25
LRP1B	0	genome.wustl.edu	37	2	141272252	141272252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	2	141272252	141272252	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.8239	p.D2747N	0.577	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				114	0	0	66	15	18.5185
CPS1	0	genome.wustl.edu	37	2	211540487	211540487	+	Silent	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	2	211540487	211540487	C	T	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	silent	c.4215	p.N1405	0.993	pfam_MGS-like_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				88	0	0	45	22	32.8358
TNS1	0	genome.wustl.edu	37	2	218712774	218712774	+	Silent	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	2	218712774	218712774	C	T	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	silent	c.2091	p.P697	0.037	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				76	0	0	52	11	17.4603
SLC4A1AP	0	genome.wustl.edu	37	2	27887266	27887266	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	2	27887266	27887266	G	C	SNP	SLC4A1AP	ENST00000326019	human	ensembl	74_37	+1	known	missense	c.647	p.R216T	1.000	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_FHA_dom,pfam_dsRNA-bd_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLC4A1AP	HGNC	ENSG00000163798				66	0	0	69	26	27.3684
SIRPB1	0	genome.wustl.edu	37	20	1552595	1552595	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	20	1552595	1552595	G	T	SNP	SIRPB1	ENST00000381605	human	ensembl	74_37	-1	known	missense	c.522	p.F174L	0.996	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPB1	HGNC	ENSG00000101307				128	0	0	142	43	23.2432
OVOL2	0	genome.wustl.edu	37	20	18005465	18005465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	20	18005465	18005465	C	T	SNP	OVOL2	ENST00000278780	human	ensembl	74_37	-1	known	missense	c.643	p.V215I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OVOL2	HGNC	ENSG00000125850				52	0	0	64	22	25.5814
E2F1	0	genome.wustl.edu	37	20	32265097	32265097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	20	32265097	32265097	C	T	SNP	E2F1	ENST00000343380	human	ensembl	74_37	-1	known	missense	c.880	p.D294N	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F1	HGNC	ENSG00000101412				64	0	0	61	15	19.7368
KCNB1	0	genome.wustl.edu	37	20	47991181	47991181	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	20	47991181	47991181	G	A	SNP	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	missense	c.916	p.R306C	1.000	pfam_Ion_trans_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445				81	0	0	83	23	21.6981
ARFRP1	0	genome.wustl.edu	37	20	62331989	62331989	+	Silent	SNP	T	T	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	20	62331989	62331989	T	G	SNP	ARFRP1	ENST00000324228	human	ensembl	74_37	-1	known	silent	c.483	p.R161	0.151	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_Gprotein_alpha_su,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARFRP1	HGNC	ENSG00000101246				32	0	0	58	6	9.375
SCAF4	0	genome.wustl.edu	37	21	33065757	33065757	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	21	33065757	33065757	G	A	SNP	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	nonsense	c.1363	p.R455*	0.991	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF4	HGNC	ENSG00000156304				63	0	0	31	13	29.5455
SUSD2	0	genome.wustl.edu	37	22	24581841	24581841	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	22	24581841	24581841	G	T	SNP	SUSD2	ENST00000358321	human	ensembl	74_37	+1	known	missense	c.1283	p.R428L	1.000	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Sushi_SCR_CCP,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994				23	0	0	13	5	27.7778
SERHL2	0	genome.wustl.edu	37	22	42951058	42951058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	22	42951058	42951058	G	A	SNP	SERHL2	ENST00000327678	human	ensembl	74_37	+1	known	missense	c.137	p.S46N	1.000	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	-	no_errors	SERHL2	HGNC	ENSG00000183569				16	0	0	12	4	25
ARHGAP31	0	genome.wustl.edu	37	3	119087339	119087339	+	Silent	SNP	T	T	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	3	119087339	119087339	T	G	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	silent	c.324	p.T108	0.892	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				70	0	0	46	17	26.9841
CP	0	genome.wustl.edu	37	3	148897410	148897410	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	3	148897410	148897410	G	A	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	missense	c.2594	p.S865F	1.000	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457				42	0	0	43	22	33.8462
CP	0	genome.wustl.edu	37	3	148897421	148897421	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	3	148897421	148897421	G	C	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	missense	c.2583	p.I861M	1.000	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457				41	0	0	40	20	33.3333
GHSR	0	genome.wustl.edu	37	3	172165518	172165518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	3	172165518	172165518	G	A	SNP	GHSR	ENST00000241256	human	ensembl	74_37	-1	known	missense	c.686	p.T229M	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R,prints_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853				79	0	0	82	54	39.7059
PIK3CA	0	genome.wustl.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	3	178928079	178928079	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1357	p.E453K	1.000	pfam_PI3K_C2_dom,superfamily_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				92	0	0	61	72	54.1353
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				51	0	0	32	39	54.9296
CDCP1	0	genome.wustl.edu	37	3	45152099	45152099	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	3	45152099	45152099	A	G	SNP	CDCP1	ENST00000296129	human	ensembl	74_37	-1	known	missense	c.890	p.L297P	0.842	NULL	superfamily_CUB_dom	-	no_errors	CDCP1	HGNC	ENSG00000163814				184	0	0	120	46	27.7108
CELSR3	0	genome.wustl.edu	37	3	48696662	48696662	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	3	48696662	48696662	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	nonsense	c.3406	p.Q1136*	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				96	0	0	97	28	22.4
PRDM5	0	genome.wustl.edu	37	4	121702362	121702362	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	4	121702362	121702362	T	G	SNP	PRDM5	ENST00000264808	human	ensembl	74_37	-1	known	missense	c.1379	p.K460T	1.000	pirsf_Znf_PRDM5,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738				89	0	0	52	20	27.7778
FAT4	0	genome.wustl.edu	37	4	126389829	126389829	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	4	126389829	126389829	A	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.12062	p.D4021G	0.999	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				101	0	0	62	32	34.0426
PCDH10	0	genome.wustl.edu	37	4	134072673	134072673	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	4	134072673	134072673	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.1378	p.A460T	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				174	0	0	177	77	30.315
DCHS2	0	genome.wustl.edu	37	4	155254497	155254497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	4	155254497	155254497	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.1366	p.G456S	0.513	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				103	0	0	111	33	22.9167
FGA	0	genome.wustl.edu	37	4	155507816	155507816	+	Silent	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	4	155507816	155507816	C	T	SNP	FGA	ENST00000302053	human	ensembl	74_37	-1	known	silent	c.765	p.P255	0.658	NULL	pfam_Fibrinogen_a/b/g_C_dom,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGA	HGNC	ENSG00000171560				162	1	0.613497	140	40	22.2222
MAP9	0	genome.wustl.edu	37	4	156294393	156294393	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	4	156294393	156294393	C	A	SNP	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	missense	c.376	p.V126L	0.000	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114				71	0	0	46	25	35.2113
MIR218-1	0	genome.wustl.edu	37	4	20529995	20529995	+	RNA	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	4	20529995	20529995	G	A	SNP	MIR218-1	ENST00000384999	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR218-1	HGNC	ENSG00000207732				50	0	0	38	15	28.3019
PDGFRA	0	genome.wustl.edu	37	4	55161419	55161419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	4	55161419	55161419	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	74_37	+1	known	missense	c.3250	p.V1084M	1.000	NULL	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRA	HGNC	ENSG00000134853				150	0	0	133	9	6.33803
EVC	0	genome.wustl.edu	37	4	5798905	5798905	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	4	5798905	5798905	G	T	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	missense	c.2043	p.E681D	1.000	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				37	0	0	36	14	28
PCDHB6	0	genome.wustl.edu	37	5	140530585	140530585	+	Silent	SNP	A	A	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	5	140530585	140530585	A	G	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	silent	c.747	p.Q249	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				69	0	0	71	4	5.33333
GABRA6	0	genome.wustl.edu	37	5	161128646	161128646	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	5	161128646	161128646	C	A	SNP	GABRA6	ENST00000274545	human	ensembl	74_37	+1	known	missense	c.1229	p.A410D	0.692	superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863				103	0	0	76	33	30.2752
NSD1	0	genome.wustl.edu	37	5	176719013	176719013	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	5	176719013	176719013	A	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.6317	p.K2106M	1.000	superfamily_Znf_FYVE_PHD	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				44	0	0	23	3	11.5385
HNRNPAB	0	genome.wustl.edu	37	5	177637620	177637620	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	5	177637620	177637620	A	C	SNP	HNRNPAB	ENST00000358344	human	ensembl	74_37	+1	known	missense	c.995	p.Y332S	1.000	NULL	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPAB	HGNC	ENSG00000197451				69	0	0	38	18	32.1429
CDH18	0	genome.wustl.edu	37	5	19473796	19473796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	5	19473796	19473796	G	A	SNP	CDH18	ENST00000274170	human	ensembl	74_37	-1	known	missense	c.1912	p.R638C	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH18	HGNC	ENSG00000145526				262	0	0	181	65	26.4228
RXFP3	0	genome.wustl.edu	37	5	33936946	33936946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	5	33936946	33936946	C	T	SNP	RXFP3	ENST00000330120	human	ensembl	74_37	+1	known	missense	c.101	p.A34V	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt	-	no_errors	RXFP3	HGNC	ENSG00000182631				138	0	0	108	56	34.1463
IRX1	0	genome.wustl.edu	37	5	3599908	3599908	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	5	3599908	3599908	G	T	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.846	p.L282F	0.228	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				12	0	0	17	7	29.1667
HCN1	0	genome.wustl.edu	37	5	45396783	45396783	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	5	45396783	45396783	G	T	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	nonsense	c.1041	p.Y347*	0.734	pfam_Ion_trans_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				99	0	0	66	21	24.1379
SEMA5A	0	genome.wustl.edu	37	5	9380056	9380056	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	5	9380056	9380056	C	T	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	1.000	NULL	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				100	0	0	83	32	27.8261
NUP43	0	genome.wustl.edu	37	6	150067675	150067675	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	6	150067675	150067675	A	G	SNP	NUP43	ENST00000367403	human	ensembl	74_37	-1	known	missense	c.140	p.V47A	0.675	NULL	superfamily_WD40_repeat_dom	-	no_errors	NUP43	HGNC	ENSG00000120253				101	0	0	85	7	7.6087
GABBR1	0	genome.wustl.edu	37	6	29591798	29591798	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	6	29591798	29591798	C	A	SNP	GABBR1	ENST00000377034	human	ensembl	74_37	-1	known	missense	c.661	p.D221Y	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Peripla_BP_I,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681				60	0	0	37	14	27.451
RREB1	0	genome.wustl.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	6	7230680	7230680	G	T	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	missense	c.2348	p.G783V	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				21	0	0	34	5	12.8205
SPAM1	0	genome.wustl.edu	37	7	123594445	123594445	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	7	123594445	123594445	C	T	SNP	SPAM1	ENST00000340011	human	ensembl	74_37	+1	known	missense	c.821	p.A274V	0.038	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304				106	0	0	81	25	23.5849
SSPO	0	genome.wustl.edu	37	7	149489292	149489292	+	RNA	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	7	149489292	149489292	C	T	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				32	0	0	30	7	18.9189
KMT2C	0	genome.wustl.edu	37	7	151878863	151878863	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	7	151878863	151878863	G	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	nonsense	c.6082	p.R2028*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				156	0	0	92	35	27.5591
KMT2C	0	genome.wustl.edu	37	7	151970925	151970925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	7	151970925	151970925	C	T	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.877	p.A293T	1.000	smart_Znf_PHD	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				111	0	0	91	10	9.90099
ZNF716	0	genome.wustl.edu	37	7	57528997	57528997	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	7	57528997	57528997	T	C	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	missense	c.830	p.V277A	0.876	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				21	0	0	24	4	14.2857
COL1A2	0	genome.wustl.edu	37	7	94056548	94056548	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	7	94056548	94056548	C	A	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.3208	p.H1070N	0.931	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				37	0	0	33	6	15.3846
DPYS	0	genome.wustl.edu	37	8	105405182	105405182	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	8	105405182	105405182	A	C	SNP	DPYS	ENST00000351513	human	ensembl	74_37	-1	known	missense	c.1273	p.F425V	1.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYS	HGNC	ENSG00000147647				122	0	0	116	28	19.4444
ZFP41	0	genome.wustl.edu	37	8	144332286	144332286	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	8	144332286	144332286	G	A	SNP	ZFP41	ENST00000330701	human	ensembl	74_37	+1	known	silent	c.273	p.E91	0.064	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP41	HGNC	ENSG00000181638				134	0	0	118	34	22.3684
ADAM18	0	genome.wustl.edu	37	8	39550198	39550198	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	8	39550198	39550198	G	T	SNP	ADAM18	ENST00000265707	human	ensembl	74_37	+1	known	missense	c.1901	p.G634V	1.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM18	HGNC	ENSG00000168619				70	0	0	40	6	13.0435
PRKDC	0	genome.wustl.edu	37	8	48743232	48743232	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	8	48743232	48743232	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	silent	c.8328	p.H2776	0.000	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				79	0	0	71	51	41.8033
FCN1	0	genome.wustl.edu	37	9	137804877	137804877	+	Silent	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	9	137804877	137804877	G	A	SNP	FCN1	ENST00000371806	human	ensembl	74_37	-1	known	silent	c.453	p.D151	0.987	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FCN1	HGNC	ENSG00000085265				30	0	0	17	6	26.087
KIAA1984	0	genome.wustl.edu	37	9	139699029	139699029	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	9	139699029	139699029	A	C	SNP	KIAA1984	ENST00000338005	human	ensembl	74_37	+1	known	missense	c.742	p.K248Q	0.985	NULL	NULL	-	no_errors	KIAA1984	HGNC	ENSG00000213213				75	0	0	44	27	38.0282
FRMD3	0	genome.wustl.edu	37	9	86004624	86004624	+	Splice_Site	SNP	C	C	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	9	86004624	86004624	C	G	SNP	FRMD3	ENST00000304195	human	ensembl	74_37	-1	known	splice_site	c.148-1	e2-1	1.000	-	-	-	no_errors	FRMD3	HGNC	ENSG00000172159				53	0	0	30	15	33.3333
POTEB	0	genome.wustl.edu	37	GL000213.1	108181	108181	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	GL000213.1	108181	108181	C	A	SNP	POTEB	ENST00000327822	human	ensembl	74_37	-1	known	missense	c.1600	p.A534S	NULL	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	BX072566.1	Clone_based_ensembl_gene	ENSG00000237375				42	0	0	18	18	50
IGSF1	0	genome.wustl.edu	37	X	130408109	130408109	+	Silent	SNP	A	A	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	X	130408109	130408109	A	G	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	silent	c.3838	p.L1280	0.996	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				137	0	0	57	62	52.1008
IGBP1	0	genome.wustl.edu	37	X	69366563	69366563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	X	69366563	69366563	G	A	SNP	IGBP1	ENST00000342206	human	ensembl	74_37	+1	known	missense	c.563	p.R188H	0.000	pfam_TAP42-like	pfam_TAP42-like	-	no_errors	IGBP1	HGNC	ENSG00000089289				62	0	0	36	4	10
ATP7A	0	genome.wustl.edu	37	X	77245091	77245091	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	X	77245091	77245091	T	A	SNP	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	missense	c.973	p.S325T	0.000	pfam_HeavyMe-assoc_HMA,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,tigrfam_HMA_Cu_ion-bd	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				172	0	0	123	11	8.20896
GPR174	0	genome.wustl.edu	37	X	78426685	78426685	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	X	78426685	78426685	T	A	SNP	GPR174	ENST00000276077	human	ensembl	74_37	+1	known	missense	c.181	p.L61I	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR174	HGNC	ENSG00000147138				16	0	0	5	10	66.6667
LGR6	0	genome.wustl.edu	37	1	202183358	202183358	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	1	202183358	202183358	G	-	DEL	LGR6	ENST00000439764	human	ensembl	74_37	+1	known	frame_shift_del	c.76	p.A26fs	0.004	NULL	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR6	HGNC	ENSG00000133067				12	0	0	10	12	54.5455
KMT2D	0	genome.wustl.edu	37	12	49431910	49431911	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	12	49431910	49431911	-	A	INS	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_ins	c.9229_9228	p.N3076fs	1.000:0.996	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				58	0	0	42	16	27.5862
DNM1P46	0	genome.wustl.edu	37	15	100340123	100340125	+	RNA	DEL	AGA	AGA	-			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	15	100340123	100340125	AGA	-	DEL	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.899:0.883:0.880	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				25	0	0	30	6	16.6667
ANKFY1	0	genome.wustl.edu	37	17	4086813	4086832	+	Frame_Shift_Del	DEL	GAGCCCAGCAGCTGGGCTGC	GAGCCCAGCAGCTGGGCTGC	-			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	GAGCCCAGCAGCTGGGCTGC	GAGCCCAGCAGCTGGGCTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	17	4086813	4086832	GAGCCCAGCAGCTGGGCTGC	-	DEL	ANKFY1	ENST00000570535	human	ensembl	74_37	-1	known	frame_shift_del	c.1958_1939	p.A647fs	0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.991:1.000:1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722				82	0	0	67	10	12.987
ME2	0	genome.wustl.edu	37	18	48422198	48422198	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	18	48422198	48422198	C	-	DEL	ME2	ENST00000321341	human	ensembl	74_37	+1	known	frame_shift_del	c.8	p.R4fs	0.999	NULL	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME2	HGNC	ENSG00000082212				57	0	0	37	7	15.9091
MYBPC2	0	genome.wustl.edu	37	19	50963366	50963367	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	19	50963366	50963367	-	G	INS	MYBPC2	ENST00000357701	human	ensembl	74_37	+1	known	frame_shift_ins	c.2861_2862	p.A955fs	1.000:1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC2	HGNC	ENSG00000086967				10	0	0	6	4	40
IGSF10	0	genome.wustl.edu	37	3	151164364	151164364	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	3	151164364	151164364	T	-	DEL	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	frame_shift_del	c.3405	p.V1136fs	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				298	0	0	180	221	55.1122
SEC24A	0	genome.wustl.edu	37	5	134060780	134060783	+	Frame_Shift_Del	DEL	AATG	AATG	-			TCGA-BR-8676-01A-11D-2394-08	TCGA-BR-8676-10A-01D-2394-08	AATG	AATG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8bb64cc8-686e-4772-a260-9c927470a90a	bd265d39-285a-4bbb-9f49-08e1c80878d2	5	134060780	134060783	AATG	-	DEL	SEC24A	ENST00000398844	human	ensembl	74_37	+1	known	frame_shift_del	c.3278_3281	p.K1093fs	1.000:1.000:1.000:1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615				38	0	0	28	4	12.5
