Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
LOC101927345	0	genome.wustl.edu	37	1	143391578	143391578	+	RNA	SNP	T	T	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	1	143391578	143391578	T	A	SNP	LOC101927345	ENST00000412492	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.685	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261				8	0	0	5	6	54.5455
HRNR	0	genome.wustl.edu	37	1	152192827	152192827	+	Silent	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	1	152192827	152192827	G	A	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.1278	p.H426	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				102	0	0	44	85	65.8915
RHBG	0	genome.wustl.edu	37	1	156351656	156351656	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	1	156351656	156351656	G	A	SNP	RHBG	ENST00000368246	human	ensembl	74_37	+1	known	missense	c.900	p.M300I	1.000	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677				84	0	0	66	13	16.4557
FCRL6	0	genome.wustl.edu	37	1	159779344	159779344	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	1	159779344	159779344	G	T	SNP	FCRL6	ENST00000368106	human	ensembl	74_37	+1	known	missense	c.757	p.A253S	0.001	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL6	HGNC	ENSG00000181036				68	0	0	55	11	16.6667
BRINP3	0	genome.wustl.edu	37	1	190067205	190067205	+	Silent	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	1	190067205	190067205	C	T	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	silent	c.2244	p.A748	0.999	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				153	0	0	28	27	49.0909
CFHR4	0	genome.wustl.edu	37	1	196876458	196876458	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	1	196876458	196876458	A	G	SNP	CFHR4	ENST00000367416	human	ensembl	74_37	+1	known	missense	c.626	p.N209S	0.010	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365				27	0	0	11	3	21.4286
RAB3GAP2	0	genome.wustl.edu	37	1	220366601	220366601	+	Silent	SNP	A	A	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	1	220366601	220366601	A	G	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	silent	c.1251	p.I417	1.000	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				69	0	0	45	14	23.7288
PRSS38	0	genome.wustl.edu	37	1	228003908	228003908	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	1	228003908	228003908	T	C	SNP	PRSS38	ENST00000366757	human	ensembl	74_37	+1	known	missense	c.266	p.I89T	0.978	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS38	HGNC	ENSG00000185888				129	0	0	113	28	19.8582
EFCAB2	0	genome.wustl.edu	37	1	245246924	245246924	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	1	245246924	245246924	G	T	SNP	EFCAB2	ENST00000366522	human	ensembl	74_37	+1	known	missense	c.715	p.V239F	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB2	HGNC	ENSG00000203666				35	0	0	14	15	51.7241
KIF26B	0	genome.wustl.edu	37	1	245849034	245849034	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	1	245849034	245849034	G	T	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	nonsense	c.2749	p.E917*	0.998	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				35	0	0	10	22	68.75
LGI1	0	genome.wustl.edu	37	10	95557278	95557278	+	Silent	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	10	95557278	95557278	G	A	SNP	LGI1	ENST00000371418	human	ensembl	74_37	+1	known	silent	c.1392	p.S464	0.169	pfam_EPTP,superfamily_WD40_repeat_dom,pfscan_EAR	pfam_EPTP,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI1	HGNC	ENSG00000108231				83	0	0	57	38	40
CTR9	0	genome.wustl.edu	37	11	10785357	10785357	+	Silent	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	10785357	10785357	C	T	SNP	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	silent	c.1125	p.Y375	0.996	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				91	0	0	27	80	74.7664
APOA4	0	genome.wustl.edu	37	11	116691970	116691970	+	Silent	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	116691970	116691970	C	T	SNP	APOA4	ENST00000357780	human	ensembl	74_37	-1	known	silent	c.804	p.A268	0.151	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244				99	0	0	71	19	21.1111
HINFP	0	genome.wustl.edu	37	11	119002253	119002253	+	Silent	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	119002253	119002253	C	T	SNP	HINFP	ENST00000350777	human	ensembl	74_37	+1	known	silent	c.420	p.F140	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HINFP	HGNC	ENSG00000172273				89	0	0	73	9	10.9756
PANX3	0	genome.wustl.edu	37	11	124487353	124487353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	124487353	124487353	G	A	SNP	PANX3	ENST00000284288	human	ensembl	74_37	+1	known	missense	c.508	p.D170N	0.996	pfam_Innexin,pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX3	HGNC	ENSG00000154143				100	0	0	31	50	61.7284
NAV2	0	genome.wustl.edu	37	11	20122686	20122686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	20122686	20122686	G	A	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.6562	p.A2188T	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				106	0	0	82	21	20.3883
PKP3	0	genome.wustl.edu	37	11	397169	397169	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	397169	397169	C	G	SNP	PKP3	ENST00000331563	human	ensembl	74_37	+1	known	missense	c.668	p.S223C	0.059	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP3	HGNC	ENSG00000184363				41	0	0	36	4	10
OR5AS1	0	genome.wustl.edu	37	11	55798075	55798075	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	55798075	55798075	T	G	SNP	OR5AS1	ENST00000313555	human	ensembl	74_37	+1	known	missense	c.181	p.Y61D	0.994	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785				60	0	0	84	10	10.6383
OR8I2	0	genome.wustl.edu	37	11	55861192	55861192	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	55861192	55861192	T	C	SNP	OR8I2	ENST00000302124	human	ensembl	74_37	+1	known	missense	c.409	p.S137P	0.855	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8I2	HGNC	ENSG00000172154				185	0	0	170	21	10.9948
OR5R1	0	genome.wustl.edu	37	11	56185107	56185107	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	56185107	56185107	G	A	SNP	OR5R1	ENST00000312253	human	ensembl	74_37	-1	known	missense	c.602	p.A201V	0.017	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5R1	HGNC	ENSG00000174942				104	0	0	110	9	7.56303
CTNND1	0	genome.wustl.edu	37	11	57581797	57581797	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	57581797	57581797	C	T	SNP	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	missense	c.2653	p.R885W	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561				24	0	0	18	3	14.2857
OR52E4	0	genome.wustl.edu	37	11	5906083	5906083	+	Silent	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	5906083	5906083	C	T	SNP	OR52E4	ENST00000316987	human	ensembl	74_37	+1	known	silent	c.561	p.A187	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR52E4	HGNC	ENSG00000180974				148	0	0	57	145	71.7822
ANO1	0	genome.wustl.edu	37	11	69934066	69934066	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	69934066	69934066	C	T	SNP	ANO1	ENST00000355303	human	ensembl	74_37	+1	known	missense	c.317	p.A106V	0.001	NULL	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620				14	0	0	3	6	66.6667
TENM4	0	genome.wustl.edu	37	11	78380911	78380911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	78380911	78380911	C	T	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.6479	p.R2160H	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				37	0	0	13	21	61.7647
FZD4	0	genome.wustl.edu	37	11	86663299	86663299	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	86663299	86663299	C	A	SNP	FZD4	ENST00000531380	human	ensembl	74_37	-1	known	missense	c.499	p.V167L	1.000	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD4	HGNC	ENSG00000174804				109	0	0	108	24	18.1818
UBE3B	0	genome.wustl.edu	37	12	109921443	109921443	+	Silent	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	12	109921443	109921443	G	A	SNP	UBE3B	ENST00000342494	human	ensembl	74_37	+1	known	silent	c.87	p.R29	1.000	superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148				161	0	0	59	87	59.589
HECTD4	0	genome.wustl.edu	37	12	112667572	112667572	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	12	112667572	112667572	C	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.5933	p.R1978H	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				175	0	0	139	32	18.7135
GOLGA3	0	genome.wustl.edu	37	12	133353343	133353343	+	Splice_Site	SNP	C	C	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	12	133353343	133353343	C	G	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	splice_site	c.3856-1	e20-1	1.000	-	-	-	no_errors	GOLGA3	HGNC	ENSG00000090615				82	0	0	40	59	59.596
CACNA2D4	0	genome.wustl.edu	37	12	1992145	1992145	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	12	1992145	1992145	G	A	SNP	CACNA2D4	ENST00000382722	human	ensembl	74_37	-1	known	missense	c.1373	p.T458M	1.000	smart_VWF_A,pfscan_VWF_A	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D4	HGNC	ENSG00000151062				20	0	0	5	9	64.2857
OVCH1	0	genome.wustl.edu	37	12	29649590	29649590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	12	29649590	29649590	G	A	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	missense	c.82	p.R28C	0.000	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				106	0	0	156	11	6.58683
KCNA6	0	genome.wustl.edu	37	12	4919260	4919260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	12	4919260	4919260	C	T	SNP	KCNA6	ENST00000280684	human	ensembl	74_37	+1	known	missense	c.53	p.P18L	0.037	prints_K_chnl_volt-dep_Kv1.6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.6,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA6	HGNC	ENSG00000151079				46	0	0	19	10	34.4828
TRHDE	0	genome.wustl.edu	37	12	73012712	73012712	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	12	73012712	73012712	G	T	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	missense	c.2228	p.R743I	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				73	0	0	56	12	17.6471
CCDC59	0	genome.wustl.edu	37	12	82746873	82746873	+	RNA	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	12	82746873	82746873	C	T	SNP	CCDC59	ENST00000548126	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC59	HGNC	ENSG00000133773				53	0	0	17	27	61.3636
PZP	0	genome.wustl.edu	37	12	9333627	9333627	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	12	9333627	9333627	G	T	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	missense	c.1791	p.D597E	1.000	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				43	0	0	32	9	21.9512
DCLK1	0	genome.wustl.edu	37	13	36686248	36686248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	13	36686248	36686248	G	A	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.481	p.R161W	1.000	NULL	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				120	1	0.826446	182	24	11.6505
DLEU7	0	genome.wustl.edu	37	13	51417425	51417425	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	13	51417425	51417425	C	T	SNP	DLEU7	ENST00000504404	human	ensembl	74_37	-1	known	missense	c.358	p.A120T	0.995	NULL	NULL	-	no_errors	DLEU7	HGNC	ENSG00000186047				19	0	0	17	5	22.7273
LOC101930578	0	genome.wustl.edu	37	13	52864001	52864001	+	RNA	SNP	A	A	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	13	52864001	52864001	A	G	SNP	LOC101930578	ENST00000451298	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.977	-	-	-	no_errors	RP11-248G5.8	Clone_based_vega_gene	ENSG00000217576				43	0	0	38	3	7.31707
PCDH9	0	genome.wustl.edu	37	13	67799641	67799641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	13	67799641	67799641	C	T	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	missense	c.2932	p.D978N	1.000	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				112	1	0.884956	69	120	63.4921
RPL10L	0	genome.wustl.edu	37	14	47120719	47120719	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	14	47120719	47120719	T	A	SNP	RPL10L	ENST00000298283	human	ensembl	74_37	-1	known	missense	c.221	p.K74I	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10L	HGNC	ENSG00000165496				103	0	0	51	16	23.8806
ZFYVE26	0	genome.wustl.edu	37	14	68238846	68238846	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	14	68238846	68238846	G	T	SNP	ZFYVE26	ENST00000347230	human	ensembl	74_37	-1	known	missense	c.5402	p.A1801E	0.841	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121				22	0	0	4	10	71.4286
ADAM21	0	genome.wustl.edu	37	14	70925359	70925359	+	Silent	SNP	T	T	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	14	70925359	70925359	T	A	SNP	ADAM21	ENST00000267499	human	ensembl	74_37	+1	known	silent	c.1143	p.A381	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985				138	0	0	76	4	5
SPRED1	0	genome.wustl.edu	37	15	38632001	38632001	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	15	38632001	38632001	G	A	SNP	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	missense	c.487	p.V163I	0.997	NULL	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				79	0	0	29	39	57.3529
SPTBN5	0	genome.wustl.edu	37	15	42154034	42154034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	15	42154034	42154034	C	T	SNP	SPTBN5	ENST00000320955	human	ensembl	74_37	-1	known	missense	c.7636	p.D2546N	0.002	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN5	HGNC	ENSG00000137877				20	0	0	10	9	47.3684
ERCC4	0	genome.wustl.edu	37	16	14042001	14042001	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	16	14042001	14042001	G	C	SNP	ERCC4	ENST00000311895	human	ensembl	74_37	+1	known	missense	c.2548	p.D850H	1.000	superfamily_RuvA_2-like,tigrfam_Rad1	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_ERCC4_domain,tigrfam_Rad1	-	no_errors	ERCC4	HGNC	ENSG00000175595				70	0	0	32	28	46.6667
COG7	0	genome.wustl.edu	37	16	23415150	23415150	+	Silent	SNP	T	T	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	16	23415150	23415150	T	C	SNP	COG7	ENST00000307149	human	ensembl	74_37	-1	known	silent	c.1668	p.K556	1.000	pfam_COG7	pfam_COG7	-	no_errors	COG7	HGNC	ENSG00000168434				51	0	0	41	3	6.81818
TAOK2	0	genome.wustl.edu	37	16	29997928	29997928	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	16	29997928	29997928	G	T	SNP	TAOK2	ENST00000308893	human	ensembl	74_37	+1	known	missense	c.2335	p.G779C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				107	0	0	54	47	46.5347
GLG1	0	genome.wustl.edu	37	16	74530507	74530507	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	16	74530507	74530507	C	A	SNP	GLG1	ENST00000205061	human	ensembl	74_37	-1	known	missense	c.810	p.L270F	1.000	pfam_Cys-rich_GLG1_repeat	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863				233	0	0	181	17	8.58586
FAM92B	0	genome.wustl.edu	37	16	85141652	85141652	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	16	85141652	85141652	C	A	SNP	FAM92B	ENST00000539556	human	ensembl	74_37	-1	known	missense	c.309	p.Q103H	0.808	pfam_FAM92	pfam_FAM92	-	no_errors	FAM92B	HGNC	ENSG00000153789				129	0	0	45	59	56.7308
ENSG00000231645	0	genome.wustl.edu	37	17	20418736	20418736	+	RNA	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	17	20418736	20418736	G	A	SNP	ENSG00000231645	ENST00000581013	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC025627.9	Clone_based_vega_gene	ENSG00000231645				64	0	0	11	40	78.4314
TP53	0	genome.wustl.edu	37	17	7579406	7579406	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	17	7579406	7579406	G	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.281	p.S94*	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				114	0	0	25	47	65.2778
ENSG00000256616	0	genome.wustl.edu	37	18	12076483	12076483	+	RNA	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	18	12076483	12076483	C	T	SNP	ENSG00000256616	ENST00000591780	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.330	-	-	-	no_errors	RP11-815J4.6	Clone_based_vega_gene	ENSG00000256616				18	0	0	2	6	75
POTEC	0	genome.wustl.edu	37	18	14542978	14542978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	18	14542978	14542978	C	T	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	missense	c.168	p.M56I	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206				874	0	0	650	80	10.9589
SMCHD1	0	genome.wustl.edu	37	18	2760681	2760681	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	18	2760681	2760681	T	C	SNP	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	missense	c.4378	p.Y1460H	0.913	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596				59	0	0	29	11	27.5
NETO1	0	genome.wustl.edu	37	18	70526277	70526277	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	18	70526277	70526277	C	G	SNP	NETO1	ENST00000327305	human	ensembl	74_37	-1	known	missense	c.253	p.D85H	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342				95	0	0	47	39	45.3488
ZFP82	0	genome.wustl.edu	37	19	36885068	36885068	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	19	36885068	36885068	C	G	SNP	ZFP82	ENST00000392171	human	ensembl	74_37	-1	known	missense	c.174	p.M58I	0.001	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP82	HGNC	ENSG00000181007				36	0	0	30	6	16.6667
SCAF1	0	genome.wustl.edu	37	19	50156862	50156862	+	Silent	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	19	50156862	50156862	C	T	SNP	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	silent	c.3216	p.D1072	0.003	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				13	0	0	1	7	87.5
BCL2L12	0	genome.wustl.edu	37	19	50172124	50172124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	19	50172124	50172124	C	T	SNP	BCL2L12	ENST00000246784	human	ensembl	74_37	+1	known	missense	c.376	p.L126F	0.938	NULL	NULL	-	no_errors	BCL2L12	HGNC	ENSG00000126453				114	0	0	82	14	14.5833
DUXA	0	genome.wustl.edu	37	19	57666682	57666682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	19	57666682	57666682	G	A	SNP	DUXA	ENST00000554048	human	ensembl	74_37	-1	known	missense	c.497	p.A166V	0.001	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	DUXA	HGNC	ENSG00000258873				64	0	0	56	36	39.1304
AFF3	0	genome.wustl.edu	37	2	100210469	100210469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	100210469	100210469	C	T	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	missense	c.1729	p.A577T	0.747	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				112	0	0	59	51	46.3636
EDAR	0	genome.wustl.edu	37	2	109513576	109513576	+	Silent	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	109513576	109513576	G	A	SNP	EDAR	ENST00000376651	human	ensembl	74_37	-1	known	silent	c.1230	p.A410	0.006	pfam_Death_domain,superfamily_DEATH-like_dom	pfam_Death_domain,superfamily_DEATH-like_dom	-	no_errors	EDAR	HGNC	ENSG00000135960				71	0	0	48	14	22.5806
FBLN7	0	genome.wustl.edu	37	2	112942907	112942907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	112942907	112942907	C	T	SNP	FBLN7	ENST00000331203	human	ensembl	74_37	+1	known	missense	c.938	p.T313M	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	FBLN7	HGNC	ENSG00000144152				96	0	0	47	27	36.4865
LRP1B	0	genome.wustl.edu	37	2	141031994	141031994	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	141031994	141031994	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.13141	p.N4381D	1.000	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				64	0	0	36	28	43.75
LRP1B	0	genome.wustl.edu	37	2	141072650	141072650	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	141072650	141072650	G	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.12659	p.T4220S	0.997	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				58	0	0	36	18	33.3333
LRP1B	0	genome.wustl.edu	37	2	141473650	141473650	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	141473650	141473650	T	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.5915	p.H1972L	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				133	0	0	99	10	9.17431
NEB	0	genome.wustl.edu	37	2	152425193	152425193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	152425193	152425193	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.17573	p.T5858M	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				9	0	0	18	3	14.2857
EVX2	0	genome.wustl.edu	37	2	176946938	176946938	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	176946938	176946938	C	T	SNP	EVX2	ENST00000308618	human	ensembl	74_37	-1	known	missense	c.667	p.A223T	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1,prints_Homeobox_metazoa	-	no_errors	EVX2	HGNC	ENSG00000174279				25	0	0	34	7	17.0732
SMC6	0	genome.wustl.edu	37	2	17847705	17847705	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	17847705	17847705	A	C	SNP	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	missense	c.3221	p.L1074R	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				32	0	0	16	10	38.4615
TTN	0	genome.wustl.edu	37	2	179464329	179464329	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	179464329	179464329	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.48595	p.V16199L	0.999	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				283	0	0	157	115	42.2794
TTN	0	genome.wustl.edu	37	2	179647717	179647717	+	Silent	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	179647717	179647717	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.2916	p.P972	0.038	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				100	0	0	43	37	46.25
SF3B1	0	genome.wustl.edu	37	2	198257729	198257729	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	198257729	198257729	A	C	SNP	SF3B1	ENST00000335508	human	ensembl	74_37	-1	known	missense	c.3723	p.I1241M	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524				86	0	0	66	15	18.5185
CYP20A1	0	genome.wustl.edu	37	2	204111644	204111644	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	204111644	204111644	T	G	SNP	CYP20A1	ENST00000356079	human	ensembl	74_37	+1	known	missense	c.289	p.S97A	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP20A1	HGNC	ENSG00000119004				172	0	0	120	60	33.3333
FASTKD2	0	genome.wustl.edu	37	2	207655332	207655332	+	Silent	SNP	T	T	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	207655332	207655332	T	C	SNP	FASTKD2	ENST00000236980	human	ensembl	74_37	+1	known	silent	c.1935	p.C645	0.993	pfam_RAP,smart_RAP	pfam_FAST_Leu-rich,pfam_FAST_2,pfam_RAP,smart_RAP	-	no_errors	FASTKD2	HGNC	ENSG00000118246				194	0	0	108	59	35.3293
SPP2	0	genome.wustl.edu	37	2	234959729	234959729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	234959729	234959729	C	T	SNP	SPP2	ENST00000168148	human	ensembl	74_37	+1	known	missense	c.200	p.S67L	0.912	pfam_Prot_inh_cystat	pfam_Spp-24,pfam_Prot_inh_cystat	-	no_errors	SPP2	HGNC	ENSG00000072080				62	0	0	35	28	44.4444
TTC27	0	genome.wustl.edu	37	2	33007732	33007732	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	33007732	33007732	C	T	SNP	TTC27	ENST00000317907	human	ensembl	74_37	+1	known	nonsense	c.1819	p.R607*	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699				44	0	0	46	6	11.5385
SLC8A1	0	genome.wustl.edu	37	2	40366566	40366566	+	Silent	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	40366566	40366566	G	A	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	silent	c.2520	p.F840	0.999	pfam_NaCa_Exmemb,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				61	0	0	28	17	37.7778
ALMS1	0	genome.wustl.edu	37	2	73677419	73677419	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	73677419	73677419	T	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.3762	p.D1254E	0.003	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				136	0	0	155	20	11.4286
C20orf26	0	genome.wustl.edu	37	20	20243679	20243679	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	20	20243679	20243679	C	A	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	missense	c.2408	p.T803K	0.989	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				98	0	0	141	35	19.8864
CD93	0	genome.wustl.edu	37	20	23064978	23064978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	20	23064978	23064978	C	T	SNP	CD93	ENST00000246006	human	ensembl	74_37	-1	known	missense	c.1852	p.E618K	0.204	superfamily_MFS_dom_general_subst_transpt	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				202	0	0	172	87	33.5907
TP53TG5	0	genome.wustl.edu	37	20	44003774	44003774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	20	44003774	44003774	C	T	SNP	TP53TG5	ENST00000372726	human	ensembl	74_37	-1	known	missense	c.673	p.V225M	0.993	NULL	NULL	-	no_errors	TP53TG5	HGNC	ENSG00000124251				90	0	0	113	9	7.37705
PARD6B	0	genome.wustl.edu	37	20	49366625	49366625	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	20	49366625	49366625	G	A	SNP	PARD6B	ENST00000371610	human	ensembl	74_37	+1	known	missense	c.719	p.R240H	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6B	HGNC	ENSG00000124171				141	0	0	152	48	24
RAE1	0	genome.wustl.edu	37	20	55942112	55942112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	20	55942112	55942112	G	A	SNP	RAE1	ENST00000371242	human	ensembl	74_37	+1	known	missense	c.511	p.E171K	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RAE1	HGNC	ENSG00000101146				109	0	0	156	34	17.8947
NCAM2	0	genome.wustl.edu	37	21	22881188	22881188	+	Silent	SNP	T	T	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	21	22881188	22881188	T	A	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	silent	c.2094	p.G698	0.932	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				33	0	0	15	7	31.8182
LTN1	0	genome.wustl.edu	37	21	30357128	30357128	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	21	30357128	30357128	G	C	SNP	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	missense	c.599	p.A200G	1.000	superfamily_ARM-type_fold	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862				85	0	0	46	25	35.2113
CCT8L2	0	genome.wustl.edu	37	22	17073169	17073169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	22	17073169	17073169	C	T	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	missense	c.272	p.R91Q	0.823	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				62	0	0	38	14	26.9231
GSTT2	0	genome.wustl.edu	37	22	24323151	24323151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	22	24323151	24323151	G	A	SNP	GSTT2	ENST00000215780	human	ensembl	74_37	+1	known	missense	c.125	p.S42N	0.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	GSTT2	HGNC	ENSG00000099984				145	0	0	104	13	11.1111
CHKB	0	genome.wustl.edu	37	22	51020991	51020991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	22	51020991	51020991	C	T	SNP	CHKB	ENST00000406938	human	ensembl	74_37	-1	known	missense	c.220	p.V74M	0.974	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_DUF227,superfamily_Kinase-like_dom	-	no_errors	CHKB	HGNC	ENSG00000100288				13	0	0	8	3	27.2727
GOLGB1	0	genome.wustl.edu	37	3	121388080	121388080	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	3	121388080	121388080	C	A	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	missense	c.9285	p.K3095N	0.677	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				94	0	0	101	20	16.5289
GOLGB1	0	genome.wustl.edu	37	3	121413488	121413488	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	3	121413488	121413488	G	C	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	missense	c.5867	p.S1956C	1.000	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				211	0	0	132	79	37.4408
DNAJB8	0	genome.wustl.edu	37	3	128181963	128181963	+	Silent	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	3	128181963	128181963	C	T	SNP	DNAJB8	ENST00000319153	human	ensembl	74_37	-1	known	silent	c.126	p.A42	0.001	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB8	HGNC	ENSG00000179407				235	0	0	99	72	42.1053
NPHP3	0	genome.wustl.edu	37	3	132416142	132416142	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	3	132416142	132416142	C	A	SNP	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	nonsense	c.2050	p.E684*	1.000	superfamily_P-loop_NTPase	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				148	0	0	116	13	10.0775
MUC4	0	genome.wustl.edu	37	3	195477791	195477791	+	Silent	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	3	195477791	195477791	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.15840	p.I5280	0.591	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				74	0	0	46	4	8
SCN5A	0	genome.wustl.edu	37	3	38618180	38618180	+	Silent	SNP	G	G	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	3	38618180	38618180	G	C	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	silent	c.3483	p.V1161	1.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				13	0	0	14	5	26.3158
SCN10A	0	genome.wustl.edu	37	3	38748813	38748813	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	3	38748813	38748813	T	G	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.4343	p.K1448T	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				108	0	0	58	24	29.2683
ULK4	0	genome.wustl.edu	37	3	41954327	41954327	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	3	41954327	41954327	C	A	SNP	ULK4	ENST00000301831	human	ensembl	74_37	-1	known	nonsense	c.868	p.E290*	0.004	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ULK4	HGNC	ENSG00000168038				71	0	0	37	38	50.6667
RAD18	0	genome.wustl.edu	37	3	8932127	8932127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	3	8932127	8932127	G	A	SNP	RAD18	ENST00000264926	human	ensembl	74_37	-1	known	missense	c.1331	p.S444L	1.000	NULL	pfam_SAP_dom,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_dom,pfscan_Znf_RING,pfscan_SAP_dom	-	no_errors	RAD18	HGNC	ENSG00000070950				110	0	0	17	32	65.3061
FBXW7	0	genome.wustl.edu	37	4	153250850	153250850	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	4	153250850	153250850	T	C	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	missense	c.1210	p.K404E	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				116	0	0	16	72	81.8182
ENSG00000253917	0	genome.wustl.edu	37	4	3949933	3949933	+	RNA	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	4	3949933	3949933	C	T	SNP	ENSG00000253917	ENST00000281228	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.397	-	-	-	no_errors	AC226119.5	Clone_based_vega_gene	ENSG00000253917				47	0	0	38	3	7.31707
UBA6-AS1	0	genome.wustl.edu	37	4	68928785	68928785	+	RNA	SNP	T	T	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	4	68928785	68928785	T	A	SNP	UBA6-AS1	ENST00000499180	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.416	-	-	-	no_errors	UBA6-AS1	HGNC	ENSG00000248049				90	0	0	25	52	67.5325
ADAMTS3	0	genome.wustl.edu	37	4	73177911	73177911	+	RNA	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	4	73177911	73177911	C	T	SNP	ADAMTS3	ENST00000511274	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ADAMTS3	HGNC	ENSG00000156140				19	0	0	5	19	79.1667
CHSY3	0	genome.wustl.edu	37	5	129520330	129520330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	5	129520330	129520330	G	A	SNP	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	missense	c.1495	p.V499I	0.963	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108				64	0	0	13	39	75
PCDHB7	0	genome.wustl.edu	37	5	140554431	140554431	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	5	140554431	140554431	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.2015	p.R672Q	0.009	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				393	0	0	142	73	33.9535
NMUR2	0	genome.wustl.edu	37	5	151775064	151775064	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	5	151775064	151775064	C	G	SNP	NMUR2	ENST00000255262	human	ensembl	74_37	-1	known	missense	c.893	p.S298T	0.914	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NeuromedU_rcpt_2	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NeuromedU_rcpt_2,prints_NeuromedU_rcpt,prints_GPCR_Rhodpsn	-	no_errors	NMUR2	HGNC	ENSG00000132911				92	0	0	41	4	8.88889
ADRA1B	0	genome.wustl.edu	37	5	159344848	159344848	+	Silent	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	5	159344848	159344848	C	A	SNP	ADRA1B	ENST00000306675	human	ensembl	74_37	+1	known	silent	c.936	p.I312	0.974	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA1B_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA1B	HGNC	ENSG00000170214				145	0	0	19	55	74.3243
ZNF622	0	genome.wustl.edu	37	5	16465699	16465699	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	5	16465699	16465699	C	G	SNP	ZNF622	ENST00000308683	human	ensembl	74_37	-1	known	missense	c.76	p.D26H	1.000	smart_Znf_U1,smart_Znf_C2H2-like	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF622	HGNC	ENSG00000173545				79	0	0	67	37	35.5769
AHI1	0	genome.wustl.edu	37	6	135784313	135784313	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	6	135784313	135784313	T	C	SNP	AHI1	ENST00000265602	human	ensembl	74_37	-1	known	missense	c.881	p.Q294R	0.919	NULL	pfam_WD40_repeat,pfam_SH3_domain,pfam_SH3_2,superfamily_WD40_repeat_dom,superfamily_SH3_domain,smart_WD40_repeat,smart_SH3_domain,pfscan_SH3_domain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_SH3_domain	-	no_errors	AHI1	HGNC	ENSG00000135541				69	0	0	67	4	5.6338
HIST1H2AB	0	genome.wustl.edu	37	6	26033708	26033708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	6	26033708	26033708	C	T	SNP	HIST1H2AB	ENST00000259791	human	ensembl	74_37	-1	known	missense	c.89	p.R30Q	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AB	HGNC	ENSG00000137259				88	0	0	56	56	50
RGL2	0	genome.wustl.edu	37	6	33260908	33260908	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	6	33260908	33260908	G	T	SNP	RGL2	ENST00000497454	human	ensembl	74_37	-1	known	missense	c.1892	p.A631D	0.588	NULL	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441				200	0	0	258	31	10.7266
KCTD20	0	genome.wustl.edu	37	6	36454780	36454780	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	6	36454780	36454780	G	A	SNP	KCTD20	ENST00000373731	human	ensembl	74_37	+1	known	missense	c.1088	p.R363H	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD20	HGNC	ENSG00000112078				177	0	0	122	104	46.0177
PRPF4B	0	genome.wustl.edu	37	6	4032190	4032190	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	6	4032190	4032190	G	T	SNP	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	nonsense	c.439	p.E147*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				104	0	0	75	92	55.0898
UNC5CL	0	genome.wustl.edu	37	6	40998414	40998414	+	Silent	SNP	G	G	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	6	40998414	40998414	G	T	SNP	UNC5CL	ENST00000244565	human	ensembl	74_37	-1	known	silent	c.1200	p.S400	0.984	NULL	pfam_ZU5,pfam_Death_domain,superfamily_DEATH-like_dom,smart_ZU5,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	UNC5CL	HGNC	ENSG00000124602				82	0	0	77	7	8.33333
USP49	0	genome.wustl.edu	37	6	41774587	41774587	+	Silent	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	6	41774587	41774587	G	A	SNP	USP49	ENST00000373009	human	ensembl	74_37	-1	known	silent	c.135	p.A45	1.000	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP49	HGNC	ENSG00000164663				138	0	0	147	18	10.9091
TFAP2D	0	genome.wustl.edu	37	6	50740473	50740473	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	6	50740473	50740473	G	A	SNP	TFAP2D	ENST00000008391	human	ensembl	74_37	+1	known	missense	c.1255	p.G419R	0.998	NULL	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2D	HGNC	ENSG00000008197				65	0	0	75	14	15.7303
DSP	0	genome.wustl.edu	37	6	7565711	7565711	+	Silent	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	6	7565711	7565711	C	T	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	silent	c.897	p.S299	0.777	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				55	0	0	75	20	21.0526
GJB7	0	genome.wustl.edu	37	6	87994325	87994325	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	6	87994325	87994325	C	A	SNP	GJB7	ENST00000296882	human	ensembl	74_37	-1	known	missense	c.306	p.E102D	0.919	pfam_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB7	HGNC	ENSG00000164411				114	0	0	105	20	16
MUC17	0	genome.wustl.edu	37	7	100680453	100680453	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	7	100680453	100680453	C	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.5756	p.S1919L	0.003	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				448	0	0	239	69	22.4026
PPP1R3A	0	genome.wustl.edu	37	7	113519744	113519744	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	7	113519744	113519744	T	G	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.1403	p.K468T	0.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				59	0	0	61	21	25.6098
NUP205	0	genome.wustl.edu	37	7	135291543	135291543	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	7	135291543	135291543	A	G	SNP	NUP205	ENST00000285968	human	ensembl	74_37	+1	known	missense	c.2950	p.R984G	0.999	pfam_Nup186/Nup192/Nup205	pfam_Nup186/Nup192/Nup205	-	no_errors	NUP205	HGNC	ENSG00000155561				121	0	0	45	52	53.6082
TTC26	0	genome.wustl.edu	37	7	138824648	138824648	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	7	138824648	138824648	G	T	SNP	TTC26	ENST00000464848	human	ensembl	74_37	+1	known	missense	c.247	p.A83S	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC26	HGNC	ENSG00000105948				59	0	0	54	10	15.625
KRBA1	0	genome.wustl.edu	37	7	149418620	149418620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	7	149418620	149418620	C	T	SNP	KRBA1	ENST00000255992	human	ensembl	74_37	+1	known	missense	c.460	p.P154S	0.223	NULL	NULL	-	no_errors	KRBA1	HGNC	ENSG00000133619				22	0	0	7	7	50
DNAH11	0	genome.wustl.edu	37	7	21621622	21621622	+	Silent	SNP	T	T	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	7	21621622	21621622	T	C	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	silent	c.1693	p.L565	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				91	0	0	55	29	34.5238
DNAH11	0	genome.wustl.edu	37	7	21654888	21654888	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	7	21654888	21654888	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	nonsense	c.4009	p.R1337*	0.603	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				65	0	0	33	7	17.5
NCF1	0	genome.wustl.edu	37	7	74193734	74193734	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	7	74193734	74193734	C	T	SNP	NCF1	ENST00000289473	human	ensembl	74_37	+1	known	missense	c.361	p.R121C	1.000	superfamily_Phox,smart_Phox,pfscan_Phox,prints_P47PHOX	pfam_SH3_domain,pfam_NADPH_oxidase_p47Phox_C,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain,prints_P47PHOX	-	no_errors	NCF1	HGNC	ENSG00000158517				52	0	0	32	12	27.2727
CSGALNACT1	0	genome.wustl.edu	37	8	19277976	19277976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	8	19277976	19277976	C	T	SNP	CSGALNACT1	ENST00000311540	human	ensembl	74_37	-1	known	missense	c.1007	p.R336Q	0.996	pfam_Chond_GalNAc	pfam_Chond_GalNAc	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				196	0	0	255	27	9.57447
AGPAT6	0	genome.wustl.edu	37	8	41467367	41467367	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	8	41467367	41467367	G	A	SNP	AGPAT6	ENST00000396987	human	ensembl	74_37	+1	known	nonsense	c.429	p.W143*	1.000	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	AGPAT6	HGNC	ENSG00000158669				118	0	0	75	35	31.8182
PPP1R42	0	genome.wustl.edu	37	8	67929969	67929969	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	8	67929969	67929969	G	A	SNP	PPP1R42	ENST00000522909	human	ensembl	74_37	-1	known	missense	c.14	p.T5I	0.996	NULL	pfam_Leu-rich_rpt	-	no_errors	PPP1R42	HGNC	ENSG00000178125				48	0	0	23	31	57.4074
CA2	0	genome.wustl.edu	37	8	86386597	86386597	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	8	86386597	86386597	A	G	SNP	CA2	ENST00000520127	human	ensembl	74_37	+1	known	missense	c.277	p.S93G	0.998	pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA2	HGNC	ENSG00000104267				191	0	0	58	77	57.037
ZNF462	0	genome.wustl.edu	37	9	109689674	109689674	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	9	109689674	109689674	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.3481	p.E1161K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				207	0	0	124	31	20
NSMF	0	genome.wustl.edu	37	9	140347581	140347581	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	9	140347581	140347581	A	G	SNP	NSMF	ENST00000371475	human	ensembl	74_37	-1	known	missense	c.974	p.L325P	0.997	NULL	superfamily_P-loop_NTPase	-	no_errors	NSMF	HGNC	ENSG00000165802				47	0	0	39	5	11.3636
NPR2	0	genome.wustl.edu	37	9	35805937	35805937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	9	35805937	35805937	C	T	SNP	NPR2	ENST00000342694	human	ensembl	74_37	+1	known	missense	c.2158	p.R720C	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR2	HGNC	ENSG00000159899				100	0	0	78	32	29.0909
KDM4C	0	genome.wustl.edu	37	9	7128217	7128217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	9	7128217	7128217	C	T	SNP	KDM4C	ENST00000381309	human	ensembl	74_37	+1	known	missense	c.2762	p.T921I	1.000	smart_Tudor	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077				66	0	0	46	33	41.7722
SPATA31D1	0	genome.wustl.edu	37	9	84606105	84606105	+	Silent	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	9	84606105	84606105	C	A	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	silent	c.720	p.P240	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				313	0	0	275	26	8.63787
ERCC6L2	0	genome.wustl.edu	37	9	98691121	98691121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	9	98691121	98691121	G	A	SNP	ERCC6L2	ENST00000437817	human	ensembl	74_37	+1	known	missense	c.1192	p.V398I	1.000	pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L2	HGNC	ENSG00000182150				97	0	0	85	17	16.6667
ZNF645	0	genome.wustl.edu	37	X	22291239	22291239	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	X	22291239	22291239	A	C	SNP	ZNF645	ENST00000323684	human	ensembl	74_37	+1	known	missense	c.131	p.N44T	0.481	NULL	pfscan_Znf_RING,pfscan_Znf_C2H2	-	no_errors	ZNF645	HGNC	ENSG00000175809				62	0	0	86	8	8.51064
ARSD	0	genome.wustl.edu	37	X	2832782	2832782	+	RNA	SNP	C	C	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	X	2832782	2832782	C	T	SNP	ARSD	ENST00000217890	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ARSD	HGNC	ENSG00000006756				162	0	0	143	22	13.3333
USP9X	0	genome.wustl.edu	37	X	41069826	41069826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	X	41069826	41069826	G	A	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	missense	c.5080	p.V1694M	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				55	0	0	5	82	94.2529
RPS4X	0	genome.wustl.edu	37	X	71492543	71492543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	X	71492543	71492543	G	A	SNP	RPS4X	ENST00000316084	human	ensembl	74_37	-1	known	missense	c.770	p.A257V	0.996	NULL	pfam_Ribosomal_S4e_central_region,pfam_Ribosomal_S4e_N,pfam_S4_RNA-bd,pfam_KOW,smart_S4_RNA-bd,pirsf_Ribosomal_S4e,pfscan_S4_RNA-bd	-	no_errors	RPS4X	HGNC	ENSG00000198034				30	0	0	28	2	6.66667
TBX22	0	genome.wustl.edu	37	X	79286562	79286562	+	Silent	SNP	C	C	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	X	79286562	79286562	C	A	SNP	TBX22	ENST00000373294	human	ensembl	74_37	+1	known	silent	c.1515	p.G505	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX22	HGNC	ENSG00000122145				40	0	0	22	11	33.3333
PABPC5	0	genome.wustl.edu	37	X	90691445	90691445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	X	90691445	90691445	G	A	SNP	PABPC5	ENST00000312600	human	ensembl	74_37	+1	known	missense	c.869	p.R290Q	0.996	tigrfam_PABP_1234	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC5	HGNC	ENSG00000174740				46	0	0	30	6	16.6667
LOC101930657	0	genome.wustl.edu	37	1	745371	745371	+	RNA	DEL	A	A	-			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	1	745371	745371	A	-	DEL	LOC101930657	ENST00000412115	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-206L10.9	Clone_based_vega_gene	ENSG00000237491				22	0	0	10	4	28.5714
PRR5L	0	genome.wustl.edu	37	11	36467865	36467865	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	36467865	36467865	A	-	DEL	PRR5L	ENST00000378867	human	ensembl	74_37	+1	known	frame_shift_del	c.460	p.I154fs	1.000	pfam_HbrB	pfam_HbrB	-	no_errors	PRR5L	HGNC	ENSG00000135362				82	0	0	16	35	68.6275
TMEM132A	0	genome.wustl.edu	37	11	60703766	60703768	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	11	60703766	60703768	AGG	-	DEL	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	in_frame_del	c.2462_2464	p.E823in_frame_del	0.052:0.297:0.411	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118				96	0	0	36	55	60.4396
AKAP11	0	genome.wustl.edu	37	13	42873858	42873859	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	13	42873858	42873859	-	A	INS	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	frame_shift_ins	c.976_977	p.S328fs	1.000:1.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516				106	0	0	133	16	10.7383
LRP1B	0	genome.wustl.edu	37	2	141819648	141819648	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	141819648	141819648	T	-	DEL	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	frame_shift_del	c.1208	p.N403fs	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				163	0	0	85	46	35.1145
BBS5	0	genome.wustl.edu	37	2	170338792	170338792	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	2	170338792	170338792	A	-	DEL	BBS5	ENST00000554017	human	ensembl	74_37	+1	known	frame_shift_del	c.91	p.I31fs	1.000	pfam_BBL5,smart_DM16_repeat	pfam_BBL5,pfam_Kelch_1,smart_DM16_repeat,smart_Kelch_1	-	no_errors	BBS5	HGNC	ENSG00000163093				222	0	0	186	29	13.4884
SATB1	0	genome.wustl.edu	37	3	18456611	18456611	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	3	18456611	18456611	G	-	DEL	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	frame_shift_del	c.631	p.L211fs	1.000	superfamily_Lambda_DNA-bd_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568				96	0	0	90	15	14.2857
AFF1	0	genome.wustl.edu	37	4	88011158	88011169	+	In_Frame_Del	DEL	CTCCTTTGACAG	CTCCTTTGACAG	-			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	CTCCTTTGACAG	CTCCTTTGACAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	4	88011158	88011169	CTCCTTTGACAG	-	DEL	AFF1	ENST00000395146	human	ensembl	74_37	+1	known	in_frame_del	c.1127_1138	p.PLTA377in_frame_del	0.998:0.995:1.000:0.998:0.946:0.796:0.996:1.000:1.000:1.000:1.000:1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493				94	0	0	70	6	7.89474
P4HA2	0	genome.wustl.edu	37	5	131528850	131528850	+	RNA	DEL	C	C	-			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	5	131528850	131528850	C	-	DEL	P4HA2	ENST00000506807	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	P4HA2	HGNC	ENSG00000072682				35	0	0	20	8	28.5714
