Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
EXOSC10	0	genome.wustl.edu	37	1	11140947	11140947	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	11140947	11140947	G	A	SNP	EXOSC10	ENST00000376936	human	ensembl	74_37	-1	known	missense	c.1460	p.T487M	0.999	superfamily_RNaseH-like_dom,superfamily_HRDC-like	pfam_3'-5'_exonuclease_dom,pfam_Exosome-assoc_fac_Rrp6_N,pfam_HRDC_dom,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_HRDC_dom,pfscan_HRDC_dom	-	no_errors	EXOSC10	HGNC	ENSG00000171824				153	0	0	68	38	35.8491
AADACL4	0	genome.wustl.edu	37	1	12726597	12726597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	12726597	12726597	C	T	SNP	AADACL4	ENST00000376221	human	ensembl	74_37	+1	known	missense	c.1075	p.R359C	0.009	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL4	HGNC	ENSG00000204518				164	0	0	155	37	19.2708
TCHHL1	0	genome.wustl.edu	37	1	152059398	152059398	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	152059398	152059398	G	A	SNP	TCHHL1	ENST00000368806	human	ensembl	74_37	-1	known	nonsense	c.760	p.Q254*	0.479	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898				184	0	0	96	114	54.2857
MSTO1	0	genome.wustl.edu	37	1	155584443	155584443	+	RNA	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	155584443	155584443	A	G	SNP	MSTO1	ENST00000483734	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MSTO1	HGNC	ENSG00000125459				13	0	0	26	6	18.75
OR6K3	0	genome.wustl.edu	37	1	158687131	158687131	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	158687131	158687131	A	T	SNP	OR6K3	ENST00000368146	human	ensembl	74_37	-1	known	missense	c.823	p.L275M	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757				122	0	0	102	31	23.3083
OR6N2	0	genome.wustl.edu	37	1	158746588	158746588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	158746588	158746588	C	T	SNP	OR6N2	ENST00000339258	human	ensembl	74_37	-1	known	missense	c.838	p.V280I	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N2	HGNC	ENSG00000188340				129	1	0.769231	106	10	8.62069
OR6N2	0	genome.wustl.edu	37	1	158746952	158746952	+	Silent	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	158746952	158746952	A	G	SNP	OR6N2	ENST00000339258	human	ensembl	74_37	-1	known	silent	c.474	p.S158	0.129	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N2	HGNC	ENSG00000188340				77	0	0	102	13	11.3043
OR6N2	0	genome.wustl.edu	37	1	158747263	158747263	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	158747263	158747263	G	A	SNP	OR6N2	ENST00000339258	human	ensembl	74_37	-1	known	silent	c.163	p.L55	0.938	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N2	HGNC	ENSG00000188340				196	0	0	154	27	14.9171
CDK11A	0	genome.wustl.edu	37	1	1635782	1635782	+	Silent	SNP	C	C	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	1635782	1635782	C	A	SNP	CDK11A	ENST00000404249	human	ensembl	74_37	-1	known	silent	c.1566	p.G522	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128				20	0	0	10	5	33.3333
B3GALT2	0	genome.wustl.edu	37	1	193149667	193149667	+	Silent	SNP	T	T	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	193149667	193149667	T	C	SNP	B3GALT2	ENST00000367434	human	ensembl	74_37	-1	known	silent	c.1026	p.V342	0.924	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GALT2	HGNC	ENSG00000162630				80	0	0	83	11	11.7021
CFHR5	0	genome.wustl.edu	37	1	196953137	196953137	+	Silent	SNP	A	A	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	196953137	196953137	A	C	SNP	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	silent	c.372	p.S124	0.001	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389				62	0	0	21	7	25
OTUD3	0	genome.wustl.edu	37	1	20234063	20234063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	20234063	20234063	G	A	SNP	OTUD3	ENST00000375120	human	ensembl	74_37	+1	known	missense	c.1021	p.V341I	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD3	HGNC	ENSG00000169914				54	0	0	33	22	40
ENSG00000228063	0	genome.wustl.edu	37	1	219347171	219347171	+	RNA	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	219347171	219347171	G	A	SNP	ENSG00000228063	ENST00000441331	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.218	-	-	-	no_errors	RP11-135J2.4	Clone_based_vega_gene	ENSG00000228063				19	0	0	47	11	18.9655
FMN2	0	genome.wustl.edu	37	1	240555839	240555839	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	240555839	240555839	T	G	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.4887	p.N1629K	0.628	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				99	0	0	52	7	11.8644
BAI2	0	genome.wustl.edu	37	1	32196483	32196483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	32196483	32196483	C	T	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	missense	c.4298	p.R1433H	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753				85	0	0	55	20	26.6667
ERRFI1	0	genome.wustl.edu	37	1	8074343	8074343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	8074343	8074343	G	A	SNP	ERRFI1	ENST00000377482	human	ensembl	74_37	-1	known	missense	c.316	p.H106Y	0.000	NULL	pfam_Cdc42_binding_dom_like,pfam_Inhibitor_Mig-6	-	no_errors	ERRFI1	HGNC	ENSG00000116285				261	0	0	151	101	40.0794
GBP6	0	genome.wustl.edu	37	1	89845996	89845996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	89845996	89845996	G	A	SNP	GBP6	ENST00000370456	human	ensembl	74_37	+1	known	missense	c.677	p.R226H	0.014	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP6	HGNC	ENSG00000183347				76	0	0	43	18	29.5082
ADARB2	0	genome.wustl.edu	37	10	1405717	1405717	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	10	1405717	1405717	C	T	SNP	ADARB2	ENST00000381312	human	ensembl	74_37	-1	known	missense	c.583	p.A195T	1.000	NULL	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736				22	0	0	15	5	25
CUL2	0	genome.wustl.edu	37	10	35300856	35300856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	10	35300856	35300856	G	A	SNP	CUL2	ENST00000537177	human	ensembl	74_37	-1	known	missense	c.2083	p.R695W	1.000	pfam_Cullin_neddylation_domain,smart_Cullin_neddylation_domain	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL2	HGNC	ENSG00000108094				26	0	0	8	20	71.4286
RBP3	0	genome.wustl.edu	37	10	48390215	48390215	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	10	48390215	48390215	G	A	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	silent	c.663	p.Y221	0.473	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618				91	0	0	51	10	16.3934
GLUD1P2	0	genome.wustl.edu	37	10	48968566	48968566	+	RNA	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	10	48968566	48968566	A	G	SNP	GLUD1P2	ENST00000594520	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	GLUD1P2	HGNC	ENSG00000227781				29	0	0	4	5	55.5556
GDI2	0	genome.wustl.edu	37	10	5808111	5808111	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	10	5808111	5808111	A	C	SNP	GDI2	ENST00000380132	human	ensembl	74_37	-1	known	missense	c.1208	p.F403C	1.000	pfam_GDP_dissociation_inhibitor,prints_RabGDI	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI2	HGNC	ENSG00000057608				96	0	0	89	13	12.7451
CTNNA3	0	genome.wustl.edu	37	10	68138997	68138997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	10	68138997	68138997	G	A	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	missense	c.1645	p.H549Y	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				102	0	0	112	28	20
FRA10AC1	0	genome.wustl.edu	37	10	95441293	95441293	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	10	95441293	95441293	G	C	SNP	FRA10AC1	ENST00000359204	human	ensembl	74_37	-1	known	nonsense	c.731	p.S244*	0.919	NULL	pfam_Folate-sensitive_fs_Fra10Ac1	-	no_errors	FRA10AC1	HGNC	ENSG00000148690				44	0	0	7	17	70.8333
GUCY1A2	0	genome.wustl.edu	37	11	106617342	106617342	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	11	106617342	106617342	A	G	SNP	GUCY1A2	ENST00000282249	human	ensembl	74_37	-1	known	missense	c.1864	p.F622L	0.028	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402				33	0	0	16	11	40.7407
C11orf52	0	genome.wustl.edu	37	11	111796415	111796415	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	11	111796415	111796415	C	A	SNP	C11orf52	ENST00000278601	human	ensembl	74_37	+1	known	missense	c.109	p.Q37K	0.081	NULL	NULL	-	no_errors	C11orf52	HGNC	ENSG00000149300				82	0	0	53	3	5.35714
HINFP	0	genome.wustl.edu	37	11	118997700	118997700	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	11	118997700	118997700	C	T	SNP	HINFP	ENST00000350777	human	ensembl	74_37	+1	known	nonsense	c.46	p.Q16*	0.992	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HINFP	HGNC	ENSG00000172273				146	0	0	104	39	27.2727
OR10G9	0	genome.wustl.edu	37	11	123894260	123894260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	11	123894260	123894260	C	T	SNP	OR10G9	ENST00000375024	human	ensembl	74_37	+1	known	missense	c.541	p.P181S	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G9	HGNC	ENSG00000236981				324	0	0	348	73	17.3397
SLC22A11	0	genome.wustl.edu	37	11	64329769	64329769	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	11	64329769	64329769	C	T	SNP	SLC22A11	ENST00000301891	human	ensembl	74_37	+1	known	missense	c.683	p.A228V	0.692	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A11	HGNC	ENSG00000168065				100	0	0	50	111	68.9441
EIF3F	0	genome.wustl.edu	37	11	8009016	8009016	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	11	8009016	8009016	C	T	SNP	EIF3F	ENST00000537635	human	ensembl	74_37	+1	known	silent	c.162	p.P54	0.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	EIF3F	HGNC	ENSG00000175390				67	0	0	70	14	16.6667
FAM181B	0	genome.wustl.edu	37	11	82444684	82444684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	11	82444684	82444684	C	T	SNP	FAM181B	ENST00000329203	human	ensembl	74_37	-1	known	missense	c.88	p.G30R	0.415	NULL	NULL	-	no_errors	FAM181B	HGNC	ENSG00000182103				13	0	0	15	5	25
C12orf49	0	genome.wustl.edu	37	12	117157596	117157596	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	117157596	117157596	C	T	SNP	C12orf49	ENST00000261318	human	ensembl	74_37	-1	known	missense	c.506	p.C169Y	1.000	pfam_UPF0454	pfam_UPF0454	-	no_errors	C12orf49	HGNC	ENSG00000111412				75	0	0	42	22	34.375
TAOK3	0	genome.wustl.edu	37	12	118598020	118598020	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	118598020	118598020	C	T	SNP	TAOK3	ENST00000392533	human	ensembl	74_37	-1	known	silent	c.2283	p.Q761	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK3	HGNC	ENSG00000135090				132	1	0.75188	93	11	10.5769
GCN1L1	0	genome.wustl.edu	37	12	120613607	120613607	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	120613607	120613607	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	silent	c.984	p.Q328	1.000	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				34	0	0	34	8	19.0476
LRRC43	0	genome.wustl.edu	37	12	122684793	122684793	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	122684793	122684793	C	T	SNP	LRRC43	ENST00000339777	human	ensembl	74_37	+1	known	silent	c.1407	p.Y469	0.536	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113				120	0	0	104	24	18.75
ULK1	0	genome.wustl.edu	37	12	132403121	132403121	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	132403121	132403121	C	T	SNP	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	silent	c.2406	p.L802	0.006	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169				22	0	0	20	4	16.6667
KRAS	0	genome.wustl.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	25398285	25398285	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.34	p.G12S	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				35	0	0	281	17	5.7047
ENSG00000256694	0	genome.wustl.edu	37	12	274553	274553	+	RNA	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	274553	274553	G	A	SNP	ENSG00000256694	ENST00000540136	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-598F7.5	Clone_based_vega_gene	ENSG00000256694				66	0	0	70	26	27.0833
PARP11	0	genome.wustl.edu	37	12	3931156	3931156	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	3931156	3931156	T	C	SNP	PARP11	ENST00000228820	human	ensembl	74_37	-1	known	missense	c.431	p.H144R	0.888	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP11	HGNC	ENSG00000111224				111	0	0	44	29	39.726
C12orf40	0	genome.wustl.edu	37	12	40077228	40077228	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	40077228	40077228	A	G	SNP	C12orf40	ENST00000324616	human	ensembl	74_37	+1	known	missense	c.1228	p.N410D	0.006	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116				44	0	0	25	6	19.3548
TESPA1	0	genome.wustl.edu	37	12	55356258	55356258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	55356258	55356258	C	T	SNP	TESPA1	ENST00000316577	human	ensembl	74_37	-1	known	missense	c.1424	p.R475Q	0.000	NULL	NULL	-	no_errors	TESPA1	HGNC	ENSG00000135426				203	0	0	180	47	20.7048
SDR9C7	0	genome.wustl.edu	37	12	57324037	57324037	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	57324037	57324037	C	T	SNP	SDR9C7	ENST00000293502	human	ensembl	74_37	-1	known	missense	c.533	p.G178D	1.000	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	SDR9C7	HGNC	ENSG00000170426				152	0	0	117	25	17.6056
ZFC3H1	0	genome.wustl.edu	37	12	72036243	72036243	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	72036243	72036243	C	T	SNP	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	missense	c.1600	p.D534N	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				81	0	0	66	94	58.75
FGD6	0	genome.wustl.edu	37	12	95502125	95502125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	95502125	95502125	C	T	SNP	FGD6	ENST00000343958	human	ensembl	74_37	-1	known	missense	c.3263	p.R1088Q	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263				48	0	0	27	16	37.2093
SACS	0	genome.wustl.edu	37	13	23905259	23905259	+	Silent	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	13	23905259	23905259	A	G	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	silent	c.12756	p.S4252	0.981	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				66	0	0	48	18	27.2727
MTUS2	0	genome.wustl.edu	37	13	29855958	29855958	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	13	29855958	29855958	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.2792	p.R931H	1.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				86	0	0	101	14	12.1739
TNFSF11	0	genome.wustl.edu	37	13	43175104	43175104	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	13	43175104	43175104	C	T	SNP	TNFSF11	ENST00000239849	human	ensembl	74_37	+1	known	silent	c.519	p.T173	0.099	superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	-	no_errors	TNFSF11	HGNC	ENSG00000120659				94	0	0	58	68	53.9683
ENOX1	0	genome.wustl.edu	37	13	43798201	43798201	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	13	43798201	43798201	C	A	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	missense	c.1788	p.Q596H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658				37	0	0	28	11	28.2051
PPP2R5C	0	genome.wustl.edu	37	14	102349794	102349794	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	14	102349794	102349794	A	T	SNP	PPP2R5C	ENST00000422945	human	ensembl	74_37	+1	known	missense	c.617	p.D206V	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5C	HGNC	ENSG00000078304				141	0	0	85	29	25.4386
DIO2	0	genome.wustl.edu	37	14	80669580	80669580	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	14	80669580	80669580	T	C	SNP	DIO2	ENST00000422005	human	ensembl	74_37	-1	known	missense	c.274	p.T92A	0.000	pfam_Iodothyronine_deiodinase	pfam_Iodothyronine_deiodinase	-	no_errors	DIO2	HGNC	ENSG00000211448				20	0	0	24	3	11.1111
SPATA7	0	genome.wustl.edu	37	14	88904415	88904415	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	14	88904415	88904415	G	T	SNP	SPATA7	ENST00000393545	human	ensembl	74_37	+1	known	missense	c.1449	p.E483D	0.011	NULL	NULL	-	no_errors	SPATA7	HGNC	ENSG00000042317				74	0	0	21	37	63.7931
GPR68	0	genome.wustl.edu	37	14	91700984	91700984	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	14	91700984	91700984	C	T	SNP	GPR68	ENST00000238699	human	ensembl	74_37	-1	known	silent	c.441	p.A147	0.954	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_OGR1_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_OGR1_rcpt,prints_GPCR_Rhodpsn,prints_Psych_rcpt	-	no_errors	GPR68	HGNC	ENSG00000119714				29	0	0	11	27	71.0526
SLC24A4	0	genome.wustl.edu	37	14	92949146	92949146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	14	92949146	92949146	G	A	SNP	SLC24A4	ENST00000532405	human	ensembl	74_37	+1	known	missense	c.1378	p.A460T	0.998	tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A4	HGNC	ENSG00000140090				95	0	0	91	20	18.018
ADAMTS17	0	genome.wustl.edu	37	15	100657064	100657064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	15	100657064	100657064	C	T	SNP	ADAMTS17	ENST00000268070	human	ensembl	74_37	-1	known	missense	c.1876	p.V626M	1.000	NULL	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470				83	0	0	62	12	16.2162
ADAMTS17	0	genome.wustl.edu	37	15	100695514	100695514	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	15	100695514	100695514	T	G	SNP	ADAMTS17	ENST00000268070	human	ensembl	74_37	-1	known	missense	c.1193	p.N398T	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470				25	0	0	20	10	33.3333
RYR3	0	genome.wustl.edu	37	15	34072507	34072507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	15	34072507	34072507	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.9233	p.S3078L	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				38	0	0	11	32	74.4186
PML	0	genome.wustl.edu	37	15	74315474	74315474	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	15	74315474	74315474	C	T	SNP	PML	ENST00000268058	human	ensembl	74_37	+1	known	missense	c.908	p.A303V	0.000	pfam_DUF3583	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				45	0	0	19	33	63.4615
SMG1	0	genome.wustl.edu	37	16	18827647	18827647	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	16	18827647	18827647	G	A	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	missense	c.10282	p.H3428Y	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				40	0	0	26	8	23.5294
ACSM2A	0	genome.wustl.edu	37	16	20497994	20497994	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	16	20497994	20497994	G	A	SNP	ACSM2A	ENST00000219054	human	ensembl	74_37	+1	known	silent	c.1728	p.A576	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747				198	0	0	73	107	59.4444
SLC5A11	0	genome.wustl.edu	37	16	24922747	24922747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	16	24922747	24922747	G	A	SNP	SLC5A11	ENST00000347898	human	ensembl	74_37	+1	known	missense	c.1921	p.A641T	0.000	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A11	HGNC	ENSG00000158865				247	0	0	86	150	63.5593
TMEM8A	0	genome.wustl.edu	37	16	426761	426761	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	16	426761	426761	G	A	SNP	TMEM8A	ENST00000431232	human	ensembl	74_37	-1	known	silent	c.687	p.C229	0.682	NULL	pfam_DUF3522,pfscan_EG-like_dom	-	no_errors	TMEM8A	HGNC	ENSG00000129925				41	0	0	35	3	7.89474
NFAT5	0	genome.wustl.edu	37	16	69727007	69727007	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	16	69727007	69727007	A	C	SNP	NFAT5	ENST00000432919	human	ensembl	74_37	+1	known	missense	c.3279	p.Q1093H	0.074	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908				167	0	0	101	43	29.8611
SUPT6H	0	genome.wustl.edu	37	17	27024707	27024707	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	17	27024707	27024707	C	G	SNP	SUPT6H	ENST00000314616	human	ensembl	74_37	+1	known	missense	c.4279	p.L1427V	1.000	pirsf_TF_Spt6,pfscan_SH2	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111				61	0	0	39	23	37.0968
LRRC37BP1	0	genome.wustl.edu	37	17	28964385	28964385	+	RNA	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	17	28964385	28964385	G	T	SNP	LRRC37BP1	ENST00000417404	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	LRRC37BP1	HGNC	ENSG00000250462				21	0	0	11	4	26.6667
PPM1D	0	genome.wustl.edu	37	17	58701061	58701061	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	17	58701061	58701061	A	G	SNP	PPM1D	ENST00000305921	human	ensembl	74_37	+1	known	missense	c.652	p.K218E	1.000	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1D	HGNC	ENSG00000170836				115	0	0	96	19	16.5217
SCN4A	0	genome.wustl.edu	37	17	62018998	62018998	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	17	62018998	62018998	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	silent	c.4644	p.S1548	0.973	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				41	0	0	32	20	38.4615
PTPN2	0	genome.wustl.edu	37	18	12884110	12884110	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	18	12884110	12884110	C	G	SNP	PTPN2	ENST00000309660	human	ensembl	74_37	-1	known	missense	c.31	p.E11Q	0.971	pirsf_Ptpn1/Ptpn2,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Ptpn1/Ptpn2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN2	HGNC	ENSG00000175354				11	0	0	9	2	18.1818
POTEC	0	genome.wustl.edu	37	18	14543140	14543140	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	18	14543140	14543140	C	T	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	silent	c.6	p.V2	0.003	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206				129	0	0	106	13	10.9244
EPB41L3	0	genome.wustl.edu	37	18	5397280	5397280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	18	5397280	5397280	G	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.2618	p.S873L	0.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				130	0	0	84	26	23.6364
RNF152	0	genome.wustl.edu	37	18	59483133	59483133	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	18	59483133	59483133	G	A	SNP	RNF152	ENST00000312828	human	ensembl	74_37	-1	known	silent	c.564	p.H188	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF152	HGNC	ENSG00000176641				129	0	0	98	21	17.6471
TSHZ1	0	genome.wustl.edu	37	18	72997563	72997563	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	18	72997563	72997563	G	A	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	silent	c.201	p.A67	0.989	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981				49	0	0	49	6	10.9091
C19orf26	0	genome.wustl.edu	37	19	1231232	1231232	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	19	1231232	1231232	C	G	SNP	C19orf26	ENST00000382477	human	ensembl	74_37	-1	known	missense	c.1082	p.S361T	1.000	NULL	NULL	-	no_errors	C19orf26	HGNC	ENSG00000099625				89	0	0	88	11	11.1111
CPAMD8	0	genome.wustl.edu	37	19	17068679	17068679	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	19	17068679	17068679	G	A	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.2401	p.H801Y	1.000	pfam_Macroglobln_a2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				303	0	0	195	61	23.8281
NCAN	0	genome.wustl.edu	37	19	19359647	19359647	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	19	19359647	19359647	G	A	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.3776	p.R1259Q	0.897	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				77	0	0	84	10	10.6383
ATP4A	0	genome.wustl.edu	37	19	36051409	36051409	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	19	36051409	36051409	G	A	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	missense	c.643	p.R215C	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				81	0	0	38	55	59.1398
CYP2S1	0	genome.wustl.edu	37	19	41712326	41712326	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	19	41712326	41712326	A	G	SNP	CYP2S1	ENST00000310054	human	ensembl	74_37	+1	known	missense	c.1448	p.N483S	0.999	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600				191	0	0	69	121	63.6842
PSG3	0	genome.wustl.edu	37	19	43233295	43233295	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	19	43233295	43233295	G	T	SNP	PSG3	ENST00000327495	human	ensembl	74_37	-1	known	missense	c.1223	p.S408Y	0.001	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG3	HGNC	ENSG00000221826				267	0	0	260	41	13.6213
SLC8A2	0	genome.wustl.edu	37	19	47933453	47933453	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	19	47933453	47933453	C	T	SNP	SLC8A2	ENST00000236877	human	ensembl	74_37	-1	known	missense	c.2659	p.G887S	1.000	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160				22	0	0	24	3	11.1111
THSD7B	0	genome.wustl.edu	37	2	137928482	137928482	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	137928482	137928482	T	C	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	missense	c.1697	p.L566P	0.975	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				50	0	0	39	23	37.0968
GALNT13	0	genome.wustl.edu	37	2	155295200	155295200	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	155295200	155295200	C	A	SNP	GALNT13	ENST00000409237	human	ensembl	74_37	+1	known	missense	c.1492	p.H498N	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278				88	0	0	55	4	6.77966
XIRP2	0	genome.wustl.edu	37	2	167760210	167760210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	167760210	167760210	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.218	p.S73L	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				63	0	0	80	21	20.7921
OSBPL6	0	genome.wustl.edu	37	2	179247234	179247234	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	179247234	179247234	A	C	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	missense	c.1633	p.I545L	1.000	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				42	0	0	24	3	11.1111
TTN	0	genome.wustl.edu	37	2	179585348	179585348	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	179585348	179585348	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.19409	p.L6470P	1.000	pfam_Ig_I-set,pfam_Ig_V-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				30	0	0	14	7	33.3333
NT5C1B	0	genome.wustl.edu	37	2	18766140	18766140	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	18766140	18766140	C	T	SNP	NT5C1B	ENST00000406971	human	ensembl	74_37	-1	known	missense	c.296	p.R99H	0.000	NULL	NULL	-	no_errors	NT5C1B	HGNC	ENSG00000185013				17	0	0	24	5	17.2414
ERBB4	0	genome.wustl.edu	37	2	212522548	212522548	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	212522548	212522548	T	G	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.1877	p.N626T	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				81	0	0	86	17	16.5049
PECR	0	genome.wustl.edu	37	2	216946474	216946474	+	RNA	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	216946474	216946474	G	T	SNP	PECR	ENST00000487318	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PECR	HGNC	ENSG00000115425				28	0	0	29	3	9.375
PID1	0	genome.wustl.edu	37	2	229890648	229890648	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	229890648	229890648	T	A	SNP	PID1	ENST00000354069	human	ensembl	74_37	-1	known	missense	c.453	p.K151N	1.000	smart_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	PID1	HGNC	ENSG00000153823				101	0	0	94	20	17.5439
SLC5A6	0	genome.wustl.edu	37	2	27427688	27427688	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	27427688	27427688	G	A	SNP	SLC5A6	ENST00000310574	human	ensembl	74_37	-1	known	silent	c.846	p.L282	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074				65	0	0	80	16	16.6667
BIRC6	0	genome.wustl.edu	37	2	32670603	32670603	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	32670603	32670603	T	C	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.4351	p.Y1451H	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				50	0	0	26	28	51.8519
FAM98A	0	genome.wustl.edu	37	2	33810313	33810313	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	33810313	33810313	G	A	SNP	FAM98A	ENST00000238823	human	ensembl	74_37	-1	known	missense	c.1087	p.R363C	0.997	NULL	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812				149	0	0	110	66	37.5
SLC4A5	0	genome.wustl.edu	37	2	74460534	74460534	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	74460534	74460534	G	T	SNP	SLC4A5	ENST00000357822	human	ensembl	74_37	-1	known	missense	c.2590	p.L864M	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687				101	0	0	82	13	13.6842
SMYD1	0	genome.wustl.edu	37	2	88405935	88405935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	2	88405935	88405935	C	T	SNP	SMYD1	ENST00000419482	human	ensembl	74_37	+1	known	missense	c.1073	p.S358L	0.511	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593				80	0	0	76	13	14.6067
SNPH	0	genome.wustl.edu	37	20	1277819	1277819	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	20	1277819	1277819	T	A	SNP	SNPH	ENST00000381867	human	ensembl	74_37	+1	known	missense	c.213	p.D71E	0.996	NULL	NULL	-	no_errors	SNPH	HGNC	ENSG00000101298				44	0	0	58	22	27.5
KIF16B	0	genome.wustl.edu	37	20	16359862	16359862	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	20	16359862	16359862	C	T	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	missense	c.2785	p.E929K	0.941	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				121	0	0	184	36	16.3636
C20orf194	0	genome.wustl.edu	37	20	3262288	3262288	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	20	3262288	3262288	T	A	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	nonsense	c.2611	p.R871*	1.000	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				89	0	0	143	20	12.2699
TGIF2	0	genome.wustl.edu	37	20	35207182	35207182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	20	35207182	35207182	C	T	SNP	TGIF2	ENST00000373872	human	ensembl	74_37	+1	known	missense	c.5	p.S2L	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF2	HGNC	ENSG00000118707				110	0	0	191	43	18.3761
SLC32A1	0	genome.wustl.edu	37	20	37357184	37357184	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	20	37357184	37357184	G	A	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	missense	c.1480	p.V494I	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438				37	0	0	81	12	12.9032
MAVS	0	genome.wustl.edu	37	20	3846340	3846340	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	20	3846340	3846340	C	G	SNP	MAVS	ENST00000428216	human	ensembl	74_37	+1	known	missense	c.1169	p.A390G	0.000	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888				18	0	0	39	7	15.2174
RBM38	0	genome.wustl.edu	37	20	55982810	55982810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	20	55982810	55982810	G	A	SNP	RBM38	ENST00000356208	human	ensembl	74_37	+1	known	missense	c.628	p.A210T	0.045	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM38	HGNC	ENSG00000132819				24	0	0	45	7	13.4615
COL9A3	0	genome.wustl.edu	37	20	61468510	61468510	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	20	61468510	61468510	G	C	SNP	COL9A3	ENST00000343916	human	ensembl	74_37	+1	known	missense	c.1679	p.G560A	0.999	pfam_Collagen	pfam_Collagen	-	no_errors	COL9A3	HGNC	ENSG00000092758				212	0	0	330	140	29.7872
SERHL2	0	genome.wustl.edu	37	22	42970032	42970032	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	22	42970032	42970032	T	C	SNP	SERHL2	ENST00000327678	human	ensembl	74_37	+1	known	missense	c.916	p.C306R	0.001	NULL	pfam_AB_hydrolase_1,prints_AB_hydrolase_1	-	no_errors	SERHL2	HGNC	ENSG00000183569				69	0	0	33	4	10.8108
FBLN1	0	genome.wustl.edu	37	22	45937242	45937242	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	22	45937242	45937242	G	A	SNP	FBLN1	ENST00000327858	human	ensembl	74_37	+1	known	silent	c.1056	p.T352	0.004	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_Fibulin-1	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,smart_Anaphylatoxin/fibulin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_Fibulin-1,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN1	HGNC	ENSG00000077942				65	0	0	43	8	15.6863
MIOX	0	genome.wustl.edu	37	22	50927478	50927478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	22	50927478	50927478	G	A	SNP	MIOX	ENST00000216075	human	ensembl	74_37	+1	known	missense	c.418	p.V140I	0.992	pfam_Inositol_oxygenase	pfam_Inositol_oxygenase	-	no_errors	MIOX	HGNC	ENSG00000100253				38	0	0	15	22	59.4595
UROC1	0	genome.wustl.edu	37	3	126224579	126224579	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	3	126224579	126224579	C	T	SNP	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	missense	c.778	p.A260T	0.835	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				62	0	0	57	13	18.5714
TMEM40	0	genome.wustl.edu	37	3	12778267	12778267	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	3	12778267	12778267	G	A	SNP	TMEM40	ENST00000431022	human	ensembl	74_37	-1	known	silent	c.588	p.Y196	0.005	NULL	NULL	-	no_errors	TMEM40	HGNC	ENSG00000088726				174	0	0	94	31	24.8
C3orf20	0	genome.wustl.edu	37	3	14770029	14770029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	3	14770029	14770029	C	T	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	missense	c.1774	p.R592W	0.000	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379				74	0	0	45	21	31.8182
DHX36	0	genome.wustl.edu	37	3	154013119	154013119	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	3	154013119	154013119	A	T	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	nonsense	c.1559	p.L520*	0.999	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				28	0	0	6	3	33.3333
LRRC31	0	genome.wustl.edu	37	3	169565929	169565929	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	3	169565929	169565929	T	G	SNP	LRRC31	ENST00000316428	human	ensembl	74_37	-1	known	missense	c.1306	p.T436P	0.939	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC31	HGNC	ENSG00000114248				90	0	0	105	6	5.40541
KCNMB2	0	genome.wustl.edu	37	3	178560469	178560469	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	3	178560469	178560469	A	T	SNP	KCNMB2	ENST00000358316	human	ensembl	74_37	+1	known	missense	c.452	p.N151I	1.000	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu,pfam_KCNMB2_ball_chain_dom,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB2	HGNC	ENSG00000197584				99	0	0	71	12	14.4578
MUC4	0	genome.wustl.edu	37	3	195505836	195505836	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	3	195505836	195505836	G	C	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.12615	p.H4205Q	0.981	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113				9	0	0	9	3	25
WDR48	0	genome.wustl.edu	37	3	39136357	39136357	+	RNA	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	3	39136357	39136357	G	A	SNP	WDR48	ENST00000466405	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	WDR48	HGNC	ENSG00000114742				36	0	0	22	7	24.1379
ANO10	0	genome.wustl.edu	37	3	43408442	43408442	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	3	43408442	43408442	G	C	SNP	ANO10	ENST00000292246	human	ensembl	74_37	-1	known	missense	c.1939	p.L647V	0.996	NULL	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746				18	0	0	9	4	30.7692
ROBO2	0	genome.wustl.edu	37	3	77657047	77657047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	3	77657047	77657047	G	A	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.3235	p.V1079I	0.984	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				43	0	0	36	28	43.75
TRAM1L1	0	genome.wustl.edu	37	4	118005573	118005573	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	4	118005573	118005573	T	C	SNP	TRAM1L1	ENST00000310754	human	ensembl	74_37	-1	known	missense	c.977	p.D326G	0.101	smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1L1	HGNC	ENSG00000174599				161	0	0	121	23	15.9722
FAT4	0	genome.wustl.edu	37	4	126240675	126240675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	4	126240675	126240675	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.3109	p.E1037K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				155	0	0	94	18	16.0714
MAP9	0	genome.wustl.edu	37	4	156277001	156277001	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	4	156277001	156277001	G	A	SNP	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	missense	c.1157	p.S386F	0.036	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114				31	0	0	10	19	65.5172
HSP90AA4P	0	genome.wustl.edu	37	4	190394342	190394342	+	RNA	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	4	190394342	190394342	A	G	SNP	HSP90AA4P	ENST00000378770	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSP90AA4P	HGNC	ENSG00000205100				44	0	0	14	22	61.1111
GNPDA2	0	genome.wustl.edu	37	4	44720403	44720403	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	4	44720403	44720403	T	C	SNP	GNPDA2	ENST00000295448	human	ensembl	74_37	-1	known	missense	c.149	p.K50R	1.000	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	-	no_errors	GNPDA2	HGNC	ENSG00000163281				63	0	0	13	14	51.8519
DRD5	0	genome.wustl.edu	37	4	9783718	9783718	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	4	9783718	9783718	C	T	SNP	DRD5	ENST00000304374	human	ensembl	74_37	+1	known	missense	c.65	p.A22V	0.261	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Dopamine_D5_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676				15	0	0	12	3	20
SLCO4C1	0	genome.wustl.edu	37	5	101597686	101597686	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	101597686	101597686	C	T	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	silent	c.951	p.G317	0.996	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930				65	0	0	36	7	16.2791
SPOCK1	0	genome.wustl.edu	37	5	136324212	136324212	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	136324212	136324212	T	A	SNP	SPOCK1	ENST00000282223	human	ensembl	74_37	-1	known	missense	c.827	p.K276M	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK1	HGNC	ENSG00000152377				113	0	0	68	39	36.4486
PCDHB3	0	genome.wustl.edu	37	5	140481830	140481830	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	140481830	140481830	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1597	p.A533T	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				152	0	0	128	29	18.4713
PCDHB8	0	genome.wustl.edu	37	5	140558215	140558215	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	140558215	140558215	G	A	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	silent	c.600	p.A200	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				178	0	0	126	12	8.69565
PCDHGA8	0	genome.wustl.edu	37	5	140774731	140774731	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	140774731	140774731	G	T	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	missense	c.2351	p.G784V	0.998	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767				108	0	0	59	18	23.3766
ADRB2	0	genome.wustl.edu	37	5	148206648	148206648	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	148206648	148206648	C	A	SNP	ADRB2	ENST00000305988	human	ensembl	74_37	+1	known	missense	c.254	p.A85E	0.839	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB2_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRB2	HGNC	ENSG00000169252				75	0	0	47	13	21.6667
ARSI	0	genome.wustl.edu	37	5	149677830	149677830	+	Silent	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	149677830	149677830	G	T	SNP	ARSI	ENST00000328668	human	ensembl	74_37	-1	known	silent	c.657	p.I219	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSI	HGNC	ENSG00000183876				40	0	0	26	16	38.0952
SOX30	0	genome.wustl.edu	37	5	157073789	157073789	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	157073789	157073789	G	A	SNP	SOX30	ENST00000265007	human	ensembl	74_37	-1	known	nonsense	c.1243	p.R415*	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX30	HGNC	ENSG00000039600				108	0	0	55	17	23.6111
IRX2	0	genome.wustl.edu	37	5	2748985	2748985	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	2748985	2748985	C	T	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	silent	c.837	p.P279	0.142	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561				17	0	0	10	7	41.1765
NNT	0	genome.wustl.edu	37	5	43609403	43609403	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	43609403	43609403	T	G	SNP	NNT	ENST00000264663	human	ensembl	74_37	+1	known	missense	c.106	p.F36V	0.998	NULL	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992				55	0	0	52	4	7.14286
ITGA1	0	genome.wustl.edu	37	5	52145263	52145263	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	52145263	52145263	G	A	SNP	ITGA1	ENST00000282588	human	ensembl	74_37	+1	known	silent	c.126	p.P42	0.794	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949				79	0	0	30	14	31.8182
ADAMTS16	0	genome.wustl.edu	37	5	5237162	5237162	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	5237162	5237162	A	C	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.2104	p.T702P	1.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				77	0	0	40	11	21.5686
PDE8B	0	genome.wustl.edu	37	5	76717658	76717658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	76717658	76717658	G	A	SNP	PDE8B	ENST00000264917	human	ensembl	74_37	+1	known	missense	c.2263	p.D755N	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_PDEase_PDE8,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,pfam_PAS_fold_3,superfamily_PAS,superfamily_CheY-like_superfamily,smart_PAS,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8B	HGNC	ENSG00000113231				32	0	0	23	11	32.3529
ROS1	0	genome.wustl.edu	37	6	117632202	117632202	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	117632202	117632202	G	A	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	missense	c.6214	p.R2072W	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				91	0	0	34	6	15
IFNGR1	0	genome.wustl.edu	37	6	137525611	137525611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	137525611	137525611	C	T	SNP	IFNGR1	ENST00000367739	human	ensembl	74_37	-1	known	missense	c.404	p.R135K	0.000	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	pfam_Interferon_gamma_pox/mammal,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,prints_Interferon_gamma_rcpt_asu	-	no_errors	IFNGR1	HGNC	ENSG00000027697				74	0	0	34	8	19.0476
HIST1H3A	0	genome.wustl.edu	37	6	26021060	26021060	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	26021060	26021060	G	T	SNP	HIST1H3A	ENST00000357647	human	ensembl	74_37	+1	known	missense	c.343	p.A115S	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3A	HGNC	ENSG00000198366				68	0	0	34	38	52.7778
BTN2A2	0	genome.wustl.edu	37	6	26388520	26388520	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	26388520	26388520	C	T	SNP	BTN2A2	ENST00000356709	human	ensembl	74_37	+1	known	missense	c.722	p.P241L	0.999	NULL	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN2A2	HGNC	ENSG00000124508				198	0	0	260	37	12.4579
BTN3A1	0	genome.wustl.edu	37	6	26413839	26413839	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	26413839	26413839	C	T	SNP	BTN3A1	ENST00000289361	human	ensembl	74_37	+1	known	silent	c.1461	p.D487	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTN3A1	HGNC	ENSG00000026950				117	0	0	171	22	11.399
HIST1H2BJ	0	genome.wustl.edu	37	6	27100278	27100278	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	27100278	27100278	G	A	SNP	HIST1H2BJ	ENST00000339812	human	ensembl	74_37	-1	known	silent	c.252	p.Y84	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BJ	HGNC	ENSG00000124635				172	0	0	187	42	18.3406
HIST1H2AL	0	genome.wustl.edu	37	6	27833333	27833333	+	Silent	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	27833333	27833333	G	T	SNP	HIST1H2AL	ENST00000357320	human	ensembl	74_37	+1	known	silent	c.201	p.A67	0.989	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AL	HGNC	ENSG00000198374				170	0	0	220	32	12.6984
HLA-G	0	genome.wustl.edu	37	6	29795926	29795926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	29795926	29795926	G	A	SNP	HLA-G	ENST00000376828	human	ensembl	74_37	+1	known	missense	c.191	p.R64Q	0.997	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-G	HGNC	ENSG00000204632				39	0	0	40	15	27.2727
CFB	0	genome.wustl.edu	37	6	31914819	31914819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	31914819	31914819	G	A	SNP	CFB	ENST00000556679	human	ensembl	74_37	+1	known	missense	c.1840	p.G614R	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CFB	HGNC	ENSG00000243649				81	0	0	113	8	6.61157
TNXB	0	genome.wustl.edu	37	6	32065659	32065659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	32065659	32065659	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.317	p.R106H	0.987	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				28	0	0	44	7	13.7255
DNAH8	0	genome.wustl.edu	37	6	38816548	38816548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	38816548	38816548	G	A	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.4519	p.G1507S	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				112	0	0	57	41	41.8367
FHL5	0	genome.wustl.edu	37	6	97052643	97052643	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	97052643	97052643	C	T	SNP	FHL5	ENST00000326771	human	ensembl	74_37	+1	known	silent	c.177	p.D59	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL5	HGNC	ENSG00000112214				67	0	0	56	9	13.8462
PPP1R3A	0	genome.wustl.edu	37	7	113522369	113522369	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	113522369	113522369	T	G	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.789	p.E263D	1.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				34	0	0	13	6	31.5789
MIR490	0	genome.wustl.edu	37	7	136587945	136587945	+	RNA	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	136587945	136587945	T	G	SNP	MIR490	ENST00000384865	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR490	HGNC	ENSG00000207597				138	0	0	118	31	20.8054
PTN	0	genome.wustl.edu	37	7	136938369	136938369	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	136938369	136938369	T	G	SNP	PTN	ENST00000348225	human	ensembl	74_37	-1	known	missense	c.131	p.K44T	1.000	pfam_PTN/MK_N_dom,superfamily_PTN/MK_diS	pfam_PTN/MK_C_dom,pfam_PTN/MK_N_dom,superfamily_PTN/MK_diS,smart_Midkine_heparin-bd_GF,prints_Midkine_heparin-bd_GF	-	no_errors	PTN	HGNC	ENSG00000105894				32	0	0	40	12	23.0769
TAS2R4	0	genome.wustl.edu	37	7	141478666	141478666	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	141478666	141478666	C	T	SNP	TAS2R4	ENST00000247881	human	ensembl	74_37	+1	known	silent	c.378	p.S126	0.019	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R4	HGNC	ENSG00000127364				204	0	0	232	25	9.72763
DGKB	0	genome.wustl.edu	37	7	14378334	14378334	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	14378334	14378334	C	T	SNP	DGKB	ENST00000258767	human	ensembl	74_37	-1	known	missense	c.1931	p.C644Y	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267				42	0	0	31	7	18.4211
SSPO	0	genome.wustl.edu	37	7	149485454	149485454	+	RNA	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	149485454	149485454	C	T	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.392	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				60	0	0	48	18	27.2727
DPP6	0	genome.wustl.edu	37	7	154585896	154585896	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	154585896	154585896	C	T	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	missense	c.1244	p.T415M	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				21	0	0	26	11	29.7297
RNF32	0	genome.wustl.edu	37	7	156468398	156468398	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	156468398	156468398	A	C	SNP	RNF32	ENST00000317955	human	ensembl	74_37	+1	known	missense	c.693	p.E231D	0.880	NULL	pfam_Znf_C3HC4_RING-type,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_IQ_motif_EF-hand-BS,pfscan_Znf_RING	-	no_errors	RNF32	HGNC	ENSG00000105982				79	0	0	72	31	30.0971
CARD11	0	genome.wustl.edu	37	7	2962952	2962952	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	2962952	2962952	C	T	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	silent	c.1956	p.S652	0.886	superfamily_PDZ	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				70	0	0	62	25	28.7356
AVL9	0	genome.wustl.edu	37	7	32598846	32598846	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	32598846	32598846	A	C	SNP	AVL9	ENST00000404479	human	ensembl	74_37	+1	known	missense	c.985	p.S329R	1.000	pfam_ABL9/DENND6_dom	pfam_ABL9/DENND6_dom,pfam_DUF2347	-	no_errors	AVL9	HGNC	ENSG00000105778				82	0	0	63	38	37.6238
BBS9	0	genome.wustl.edu	37	7	33376157	33376157	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	33376157	33376157	G	T	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	missense	c.1121	p.R374L	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507				36	0	0	23	4	14.8148
URGCP	0	genome.wustl.edu	37	7	43918102	43918102	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	43918102	43918102	G	A	SNP	URGCP	ENST00000453200	human	ensembl	74_37	-1	known	silent	c.960	p.S320	0.992	NULL	superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608				89	0	0	74	41	35.6522
C7orf57	0	genome.wustl.edu	37	7	48081095	48081095	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	48081095	48081095	G	T	SNP	C7orf57	ENST00000348904	human	ensembl	74_37	+1	known	missense	c.220	p.A74S	0.880	NULL	NULL	-	no_errors	C7orf57	HGNC	ENSG00000164746				22	0	0	35	3	7.89474
CLIP2	0	genome.wustl.edu	37	7	73753054	73753054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	73753054	73753054	C	T	SNP	CLIP2	ENST00000223398	human	ensembl	74_37	+1	known	missense	c.398	p.P133L	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_t-SNARE,pfscan_CAP-Gly_domain	-	no_errors	CLIP2	HGNC	ENSG00000106665				16	0	0	20	4	16.6667
GNAT3	0	genome.wustl.edu	37	7	80108223	80108223	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	80108223	80108223	C	T	SNP	GNAT3	ENST00000398291	human	ensembl	74_37	-1	known	missense	c.395	p.R132K	0.160	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT3	HGNC	ENSG00000214415				123	0	0	126	8	5.97015
HGF	0	genome.wustl.edu	37	7	81346652	81346652	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	81346652	81346652	T	A	SNP	HGF	ENST00000222390	human	ensembl	74_37	-1	known	missense	c.1301	p.K434M	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991				113	0	0	89	20	18.3486
RUNDC3B	0	genome.wustl.edu	37	7	87329803	87329803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	87329803	87329803	G	A	SNP	RUNDC3B	ENST00000338056	human	ensembl	74_37	+1	known	missense	c.356	p.R119Q	1.000	pfam_Run,pfscan_Run	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784				73	0	0	33	18	35.2941
SAMD9L	0	genome.wustl.edu	37	7	92760776	92760776	+	Silent	SNP	T	T	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	92760776	92760776	T	A	SNP	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	silent	c.4509	p.T1503	0.006	NULL	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				143	0	0	80	44	35.4839
SPDYE3	0	genome.wustl.edu	37	7	99909534	99909534	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	7	99909534	99909534	C	T	SNP	SPDYE3	ENST00000332397	human	ensembl	74_37	+1	known	nonsense	c.706	p.R236*	0.003	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE3	HGNC	ENSG00000214300				46	0	0	37	18	32.7273
SPAG1	0	genome.wustl.edu	37	8	101195650	101195650	+	Silent	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	101195650	101195650	C	T	SNP	SPAG1	ENST00000251809	human	ensembl	74_37	+1	known	silent	c.474	p.Y158	0.998	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450				53	0	0	32	6	15.7895
CSMD3	0	genome.wustl.edu	37	8	113353899	113353899	+	Silent	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	113353899	113353899	A	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.6459	p.F2153	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				41	0	0	39	8	17.0213
XPO7	0	genome.wustl.edu	37	8	21837641	21837641	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	21837641	21837641	T	G	SNP	XPO7	ENST00000434536	human	ensembl	74_37	+1	known	missense	c.911	p.F304C	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227				9	0	0	9	8	47.0588
NUDT18	0	genome.wustl.edu	37	8	21965689	21965689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	21965689	21965689	G	A	SNP	NUDT18	ENST00000309188	human	ensembl	74_37	-1	known	missense	c.331	p.R111W	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase	-	no_errors	NUDT18	HGNC	ENSG00000173566				16	0	0	10	9	47.3684
POLR3D	0	genome.wustl.edu	37	8	22105684	22105684	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	22105684	22105684	G	A	SNP	POLR3D	ENST00000397802	human	ensembl	74_37	+1	known	missense	c.379	p.V127M	0.989	NULL	pfam_RPC4	-	no_errors	POLR3D	HGNC	ENSG00000168495				93	0	0	74	57	43.5115
NEFM	0	genome.wustl.edu	37	8	24772237	24772237	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	24772237	24772237	C	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.931	p.R311C	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				34	0	0	51	6	10.5263
GGH	0	genome.wustl.edu	37	8	63942754	63942754	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	63942754	63942754	A	T	SNP	GGH	ENST00000260118	human	ensembl	74_37	-1	known	missense	c.247	p.Y83N	0.994	pfam_Peptidase_C26,pfam_GATASE	pfam_Peptidase_C26,pfam_GATASE	-	no_errors	GGH	HGNC	ENSG00000137563				74	0	0	66	8	10.8108
TTPA	0	genome.wustl.edu	37	8	63978606	63978606	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	63978606	63978606	G	A	SNP	TTPA	ENST00000260116	human	ensembl	74_37	-1	known	silent	c.409	p.L137	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPA	HGNC	ENSG00000137561				47	0	0	51	16	23.8806
C8orf34	0	genome.wustl.edu	37	8	69728144	69728144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	69728144	69728144	G	A	SNP	C8orf34	ENST00000518698	human	ensembl	74_37	+1	known	missense	c.1573	p.V525I	1.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084				107	0	0	102	43	29.6552
GDAP1	0	genome.wustl.edu	37	8	75263617	75263617	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	75263617	75263617	G	T	SNP	GDAP1	ENST00000220822	human	ensembl	74_37	+1	known	nonsense	c.226	p.E76*	1.000	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GDAP1	HGNC	ENSG00000104381				279	0	0	312	61	16.3539
ZFHX4	0	genome.wustl.edu	37	8	77763887	77763887	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	77763887	77763887	C	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.4730	p.S1577Y	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				31	0	0	42	5	10.6383
GDF6	0	genome.wustl.edu	37	8	97156922	97156922	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	8	97156922	97156922	C	T	SNP	GDF6	ENST00000287020	human	ensembl	74_37	-1	known	missense	c.1237	p.G413S	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466				35	0	0	49	15	23.4375
FOXE1	0	genome.wustl.edu	37	9	100616626	100616626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	9	100616626	100616626	C	T	SNP	FOXE1	ENST00000375123	human	ensembl	74_37	+1	known	missense	c.430	p.R144C	1.000	pfam_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXE1	HGNC	ENSG00000178919				35	0	0	38	11	22.449
TGFBR1	0	genome.wustl.edu	37	9	101907101	101907101	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	9	101907101	101907101	T	C	SNP	TGFBR1	ENST00000374994	human	ensembl	74_37	+1	known	missense	c.1061	p.L354P	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TGFBR1	HGNC	ENSG00000106799				88	0	0	38	6	13.6364
TLR4	0	genome.wustl.edu	37	9	120475713	120475713	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	9	120475713	120475713	A	G	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.1307	p.Q436R	0.000	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				116	0	0	21	40	65.5738
MPDZ	0	genome.wustl.edu	37	9	13119520	13119520	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	9	13119520	13119520	G	A	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.5360	p.A1787V	0.995	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				110	0	0	113	8	6.61157
SPATA31A6	0	genome.wustl.edu	37	9	43629308	43629308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	9	43629308	43629308	G	A	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.202	p.R68W	0.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				229	0	0	192	14	6.79612
CEP78	0	genome.wustl.edu	37	9	80851395	80851395	+	Silent	SNP	G	G	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	9	80851395	80851395	G	A	SNP	CEP78	ENST00000376597	human	ensembl	74_37	+1	known	silent	c.129	p.L43	0.999	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	CEP78	HGNC	ENSG00000148019				15	0	0	12	4	25
NXF4	0	genome.wustl.edu	37	X	101823347	101823347	+	RNA	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	X	101823347	101823347	C	T	SNP	NXF4	ENST00000360035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.910	-	-	-	no_errors	NXF4	HGNC	ENSG00000196970				15	0	0	13	3	18.75
DCX	0	genome.wustl.edu	37	X	110574005	110574005	+	RNA	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	X	110574005	110574005	C	T	SNP	DCX	ENST00000496551	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DCX	HGNC	ENSG00000077279				71	0	0	35	32	47.7612
FGF13	0	genome.wustl.edu	37	X	137717619	137717619	+	Silent	SNP	T	T	C			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	X	137717619	137717619	T	C	SNP	FGF13	ENST00000370603	human	ensembl	74_37	-1	known	silent	c.630	p.K210	1.000	superfamily_Cytokine_IL1-like	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF13	HGNC	ENSG00000129682				157	0	0	53	65	55.0847
FMR1	0	genome.wustl.edu	37	X	147011748	147011748	+	Silent	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	X	147011748	147011748	T	G	SNP	FMR1	ENST00000370475	human	ensembl	74_37	+1	known	silent	c.615	p.A205	0.998	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081				129	0	0	62	22	26.1905
MXRA5	0	genome.wustl.edu	37	X	3235214	3235214	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	X	3235214	3235214	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.6508	p.A2170T	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				29	0	0	11	6	35.2941
CXorf22	0	genome.wustl.edu	37	X	36007614	36007614	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	X	36007614	36007614	T	G	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	+1	known	missense	c.2892	p.F964L	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164				77	0	0	33	3	8.33333
WNK3	0	genome.wustl.edu	37	X	54328235	54328235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	X	54328235	54328235	C	T	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	missense	c.1147	p.E383K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632				60	0	0	21	5	19.2308
NLGN4X	0	genome.wustl.edu	37	X	5821835	5821835	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	X	5821835	5821835	T	G	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	missense	c.944	p.K315T	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				115	0	0	47	26	35.6164
PHKA1	0	genome.wustl.edu	37	X	71864212	71864212	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	X	71864212	71864212	C	T	SNP	PHKA1	ENST00000373539	human	ensembl	74_37	-1	known	missense	c.1459	p.G487R	0.999	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177				36	0	0	28	3	9.67742
TXNIP	0	genome.wustl.edu	37	1	145438717	145438718	+	RNA	INS	-	-	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	145438717	145438718	-	G	INS	TXNIP	ENST00000475171	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	TXNIP	HGNC	ENSG00000117289				37	0	0	28	15	34.8837
PIK3R3	0	genome.wustl.edu	37	1	46509408	46509410	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	1	46509408	46509410	GTT	-	DEL	PIK3R3	ENST00000540385	human	ensembl	74_37	-1	known	in_frame_del	c.1461_1459	p.N487in_frame_del	1.000:1.000:1.000	pfscan_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R3	HGNC	ENSG00000117461				91	0	0	42	13	23.6364
ENSG00000257434	0	genome.wustl.edu	37	12	75435987	75435987	+	RNA	DEL	T	T	-			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	12	75435987	75435987	T	-	DEL	ENSG00000257434	ENST00000547040	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-81K13.1	Clone_based_vega_gene	ENSG00000257434				12	0	0	4	3	42.8571
ARHGAP5	0	genome.wustl.edu	37	14	32561145	32561149	+	Frame_Shift_Del	DEL	GAGAA	GAGAA	-			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	GAGAA	GAGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	14	32561145	32561149	GAGAA	-	DEL	ARHGAP5	ENST00000345122	human	ensembl	74_37	+1	known	frame_shift_del	c.1270_1274	p.K425fs	1.000:1.000:1.000:1.000:1.000	superfamily_FF_domain	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	-	no_errors	ARHGAP5	HGNC	ENSG00000100852				128	0	0	41	36	46.7532
FAM177A1	0	genome.wustl.edu	37	14	35550228	35550230	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	14	35550228	35550230	GAA	-	DEL	FAM177A1	ENST00000280987	human	ensembl	74_37	+1	known	in_frame_del	c.505_507	p.E172in_frame_del	1.000:0.996:0.975	NULL	NULL	-	no_errors	FAM177A1	HGNC	ENSG00000151327				22	0	0	16	3	15.7895
TP53	0	genome.wustl.edu	37	17	7579381	7579381	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	17	7579381	7579381	G	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.306	p.Y103fs	0.304	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				97	0	0	48	50	51.0204
DZANK1	0	genome.wustl.edu	37	20	18414185	18414186	+	RNA	INS	-	-	A			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	20	18414185	18414186	-	A	INS	DZANK1	ENST00000460891	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008:0.014	-	-	-	no_errors	DZANK1	HGNC	ENSG00000089091				8	0	0	17	3	15
PTGER4	0	genome.wustl.edu	37	5	40692448	40692465	+	In_Frame_Del	DEL	GAAACACTGAACTTATCA	GAAACACTGAACTTATCA	-			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	GAAACACTGAACTTATCA	GAAACACTGAACTTATCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	5	40692448	40692465	GAAACACTGAACTTATCA	-	DEL	PTGER4	ENST00000302472	human	ensembl	74_37	+1	known	in_frame_del	c.1435_1452	p.TLNLSE480in_frame_del	1.000:1.000:1.000:0.999:0.993:0.322:0.935:0.997:1.000:1.000:1.000:1.000:1.000:1.000:0.974:1.000:1.000:0.995	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC	ENSG00000171522				98	0	0	58	5	7.93651
REV3L	0	genome.wustl.edu	37	6	111693903	111693904	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	6	111693903	111693904	-	G	INS	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	frame_shift_ins	c.5655_5654	p.S1886fs	1.000:1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				218	0	0	144	31	17.7143
SVEP1	0	genome.wustl.edu	37	9	113194198	113194199	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	9	113194198	113194199	CA	-	DEL	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	frame_shift_del	c.5350_5349	p.A1784fs	1.000:1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				55	0	0	23	37	61.6667
IL9R	0	genome.wustl.edu	37	X	155239799	155239801	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-BR-8679-01A-11D-2394-08	TCGA-BR-8679-10A-01D-2394-08	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe1ffdcc-e1d7-4573-a7ac-d6f6923324cc	2505360b-a523-4f55-adc3-50439aec8beb	X	155239799	155239801	AGC	-	DEL	IL9R	ENST00000244174	human	ensembl	74_37	+1	known	in_frame_del	c.1291_1293	p.S434in_frame_del	0.000:0.001:0.001	NULL	superfamily_Fibronectin_type3	-	no_errors	IL9R	HGNC	ENSG00000124334				34	0	0	23	3	11.5385
